Citrus Sinensis ID: 026945
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 230 | 2.2.26 [Sep-21-2011] | |||||||
| Q8K582 | 438 | tRNA-dihydrouridine(16/17 | yes | no | 0.665 | 0.349 | 0.443 | 5e-37 | |
| Q8C2P3 | 475 | tRNA-dihydrouridine(16/17 | yes | no | 0.665 | 0.322 | 0.437 | 1e-36 | |
| Q6P1R4 | 473 | tRNA-dihydrouridine(16/17 | yes | no | 0.669 | 0.325 | 0.441 | 2e-36 | |
| Q9HGN6 | 399 | tRNA-dihydrouridine(16/17 | yes | no | 0.765 | 0.441 | 0.348 | 2e-24 | |
| P53759 | 423 | tRNA-dihydrouridine(16/17 | yes | no | 0.786 | 0.427 | 0.321 | 5e-23 | |
| Q09504 | 284 | Uncharacterized tRNA-dihy | no | no | 0.695 | 0.563 | 0.306 | 2e-16 | |
| O74553 | 326 | tRNA-dihydrouridine(20a/2 | no | no | 0.495 | 0.349 | 0.362 | 2e-15 | |
| O95620 | 317 | tRNA-dihydrouridine(20a/2 | no | no | 0.5 | 0.362 | 0.355 | 2e-15 | |
| Q32M08 | 324 | tRNA-dihydrouridine(20a/2 | no | no | 0.5 | 0.354 | 0.363 | 4e-15 | |
| Q55724 | 355 | Probable tRNA-dihydrourid | N/A | no | 0.521 | 0.338 | 0.367 | 4e-15 |
| >sp|Q8K582|DUS1L_RAT tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Rattus norvegicus GN=Dus1l PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 154 bits (389), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/169 (44%), Positives = 107/169 (63%), Gaps = 16/169 (9%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELADEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Rattus norvegicus (taxid: 10116) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: - |
| >sp|Q8C2P3|DUS1L_MOUSE tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Mus musculus GN=Dus1l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 107/169 (63%), Gaps = 16/169 (9%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q6P1R4|DUS1L_HUMAN tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 106/170 (62%), Gaps = 16/170 (9%)
Query: 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVR 198
Query: 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEIS 136
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 199 KAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW-------- 250
Query: 137 KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 --------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q9HGN6|DUS1_SCHPO tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (280), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 106/192 (55%), Gaps = 16/192 (8%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
+N L++S++ KL L++PV+ KIR+FP+ Q T+ YAKM+ AG S+LAVHGR R++K
Sbjct: 125 ENWNLIESIITKLHTELSIPVTAKIRIFPDPQKTLDYAKMILKAGASILAVHGRLREQKG 184
Query: 62 GKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
ADW I+ ++ L + ANGN+ H +D+ +C++ TG +GVLSAE L NP +
Sbjct: 185 HFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYTGVDGVLSAEGSLYNPRI 244
Query: 120 FAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV-----PWRMIRSHVHKLLGE 174
F S ++ +D D+ EYL + ++ + I+ H+ KL+
Sbjct: 245 FLP-------PSSPLMTLYPRID--DMCEEYLNIIREFKLESDYSSLSAIKGHLFKLMRP 295
Query: 175 WFRIQPGVREDL 186
I +R L
Sbjct: 296 LLSIHTDIRSKL 307
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|P53759|DUS1_YEAST tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DUS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 103/196 (52%), Gaps = 15/196 (7%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
M+ L+ +L+ L NL VPV+ KIR+F + + ++ YAKM+ DAG L VHGR R++K
Sbjct: 136 MEEWDLIHNLINTLHKNLKVPVTAKIRIFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQK 195
Query: 61 DGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118
K A+W IK +++ L ANGN+ + ED+ +C+E G + V+SAE L NP
Sbjct: 196 GQKTGLANWETIKYLRDNLPKETVFFANGNILYPEDISRCMEHIGADAVMSAEGNLYNPG 255
Query: 119 LFAGFRTAEWIVGSEEISKDGNLDQADLLV-EYLKL---CEKYPVPWRMIRSHVHKLLGE 174
+F +T +K+ + D ++ EY ++ C++ ++SH K+L
Sbjct: 256 VFNVGQTK---------NKEKIFPRVDKIIREYFQIVKECQESKASKTAMKSHFFKILRP 306
Query: 175 WFRIQPGVREDLNAQN 190
+ +R L N
Sbjct: 307 FLPHHTDIRSTLATMN 322
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Specifically modifies U16 and U17 in cytoplasmic tRNAs. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 8 EC: 8 |
| >sp|Q09504|YQI2_CAEEL Uncharacterized tRNA-dihydrouridine synthase-like protein C45G9.2 OS=Caenorhabditis elegans GN=C45G9.2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81
VS KIR+ +++ T+ + E AG + L VHGRT ++ D A++ VK+++ +
Sbjct: 122 VSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQRAEP---IDIQALRIVKDSVSV 178
Query: 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNL 141
P++ANG + E+ E+TG +G+++A LL+NPALFAG
Sbjct: 179 PIIANGGITTREEALFLAEQTGVDGIMAANGLLDNPALFAGHEHTP-------------- 224
Query: 142 DQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFE-FLYN 199
+D + +++L +Y + W + H+ +L F Q R N N RL + FL N
Sbjct: 225 --SDCVENFMRLSREYGLDWLLYHQHLQYMLRPVFSAQQ--RRVFNELNGRLAIDHFLNN 280
Query: 200 LVD 202
L+D
Sbjct: 281 LLD 283
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|O74553|DUS4_SCHPO tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dus4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 68/116 (58%), Gaps = 2/116 (1%)
Query: 13 KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72
K L + KIR+ +L T +++E +G ++ VHGRTR +D F + +AI
Sbjct: 137 KSTLGESFCTEVKIRIAKDLNKTRHLMQVIEKSGADIITVHGRTR--QDRSSFPVNLDAI 194
Query: 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEW 128
+ V+ ++IPV+ANG+V+ + + + T +G++SA LLENPALFAG+ W
Sbjct: 195 REVRPCVQIPVVANGDVKSLRKGLEIAKYTETQGIMSARGLLENPALFAGYEETPW 250
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 9 EC: 0 |
| >sp|O95620|DUS4L_HUMAN tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS4L PE=2 SV=2 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 6 LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
LV+ +V+++ + P VS KIR+ +L+ T+ + E G S + VHGRT +E+
Sbjct: 136 LVQDMVKQVRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERHQ 195
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
+++IK +K + IPV+ANG++R +++ + TG +GV+ A LL NPA+FAG
Sbjct: 196 P---VHYDSIKIIKENMSIPVIANGDIRSLKEAENVWRITGTDGVMVARGLLANPAMFAG 252
Query: 123 F 123
+
Sbjct: 253 Y 253
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q32M08|DUS4L_MOUSE tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus4l PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 71/121 (58%), Gaps = 6/121 (4%)
Query: 6 LVKSLVEKLALNLNVP---VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG 62
LV +V ++ + P VS KIR+ +L TI + E G S + VHGRT +E+
Sbjct: 136 LVHDMVRQVRNRVESPRFSVSIKIRIHDDLARTIDLCRKAEATGVSWITVHGRTVEERHQ 195
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122
++AIK +K + IP++ANG++R +++ + + TG +GV+ A LL NPA+FAG
Sbjct: 196 P---VHYDAIKMIKENVSIPIVANGDIRSLKEAENVWQMTGTDGVMVARGLLANPAMFAG 252
Query: 123 F 123
+
Sbjct: 253 Y 253
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: - |
| >sp|Q55724|DUS1_SYNY3 Probable tRNA-dihydrouridine synthase 1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dus1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
+ +++V+ + ++VPV+ K R+ + +++A+ L+DAG +L +HGRTR + G
Sbjct: 152 VAEAIVKTVVAAVDVPVTVKTRLGWDDGEINIVEFAQRLQDAGAQMLTLHGRTRAQ--GY 209
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG- 122
RA W I VK AL IPV+ANG++ +E CLEETG +GV+ + L P L
Sbjct: 210 NGRARWQWIAKVKQALTIPVIANGDIFSVEAAIACLEETGADGVMCSRGSLGYPFLVGEI 269
Query: 123 ---FRTAE 127
F+T E
Sbjct: 270 EHFFKTGE 277
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Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 230 | ||||||
| TAIR|locus:2155528 | 423 | AT5G67220 [Arabidopsis thalian | 0.939 | 0.510 | 0.829 | 1.4e-94 | |
| ZFIN|ZDB-GENE-030131-1435 | 511 | dus1l "dihydrouridine synthase | 0.752 | 0.338 | 0.439 | 1.3e-36 | |
| RGD|708389 | 438 | Pp3111 "PP3111 protein" [Rattu | 0.665 | 0.349 | 0.449 | 2.8e-34 | |
| UNIPROTKB|J3QLE4 | 309 | DUS1L "tRNA-dihydrouridine(16/ | 0.734 | 0.546 | 0.416 | 3.6e-34 | |
| UNIPROTKB|Q6P1R4 | 473 | DUS1L "tRNA-dihydrouridine(16/ | 0.734 | 0.357 | 0.416 | 3.6e-34 | |
| UNIPROTKB|E2R9L8 | 475 | DUS1L "Uncharacterized protein | 0.665 | 0.322 | 0.443 | 4.6e-34 | |
| UNIPROTKB|H0YGW8 | 298 | DUS1L "tRNA-dihydrouridine(16/ | 0.665 | 0.513 | 0.443 | 5.8e-34 | |
| MGI|MGI:1915980 | 475 | Dus1l "dihydrouridine synthase | 0.665 | 0.322 | 0.437 | 7.4e-34 | |
| UNIPROTKB|J9NYR0 | 584 | DUS1L "Uncharacterized protein | 0.665 | 0.261 | 0.443 | 1.1e-33 | |
| FB|FBgn0031238 | 505 | CG3645 [Drosophila melanogaste | 0.760 | 0.346 | 0.424 | 2.5e-33 |
| TAIR|locus:2155528 AT5G67220 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 180/217 (82%), Positives = 195/217 (89%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
MDNLPLVKSLVEKLA NLNVPVSCKIR+FPNL+DT+KYAKMLEDAGCSLLAVHGRTRDEK
Sbjct: 192 MDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLEDAGCSLLAVHGRTRDEK 251
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
DGKKFRADW+AIK VKNA+RIPVLANGNVR +EDV C++ETG EGVLSAE+LLENPA F
Sbjct: 252 DGKKFRADWSAIKEVKNAMRIPVLANGNVRCIEDVDNCIKETGVEGVLSAETLLENPAAF 311
Query: 121 AGFRTAEWIVGSEEIS-KDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQ 179
AGFRTAEW +EE DG LDQ DL+VEYLKLCEK+PVPWRMIRSHVHK+LGEWFRI
Sbjct: 312 AGFRTAEWAKDNEEEGFVDGGLDQGDLVVEYLKLCEKHPVPWRMIRSHVHKMLGEWFRIH 371
Query: 180 PGVREDLNAQNRLTFEFLYNLVDRLRELGVRIPLYKK 216
P VRE LNAQN LTFEFLY LVD+LRELG R+PLYKK
Sbjct: 372 PQVREQLNAQNILTFEFLYGLVDQLRELGGRVPLYKK 408
|
|
| ZFIN|ZDB-GENE-030131-1435 dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 84/191 (43%), Positives = 115/191 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ +++ L+VP++CKIRVFP ++ T+KYAKMLE AGC LL VHGRT+D+K
Sbjct: 156 DEWDLLEKMIKLANEKLSVPITCKIRVFPEIEKTVKYAKMLEKAGCQLLTVHGRTKDQKG 215
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++H+ DV C+EETG +GV+SAE L NPALF
Sbjct: 216 ALTGIASWKHIKAVREAVNIPVFANGNIQHLSDVHHCMEETGVQGVMSAEGNLHNPALFE 275
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY-PVPWRMIRSHVHKLLGEWFRIQP 180
G W ++ EYL + EK+ P +R+H+ KL +I
Sbjct: 276 GRSPPVW----------------EMAEEYLDIVEKHSPCSLSFVRAHIFKLWHHTLQIHQ 319
Query: 181 GVREDL-NAQN 190
+REDL A+N
Sbjct: 320 DLREDLAKAKN 330
|
|
| RGD|708389 Pp3111 "PP3111 protein" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
Identities = 76/169 (44%), Positives = 108/169 (63%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN+R ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIRCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+ AD EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 ----ELAD---EYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
|
|
| UNIPROTKB|J3QLE4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/185 (41%), Positives = 112/185 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G A W +L EYL + ++P P +R+H+ KL ++
Sbjct: 244 GRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQE 287
Query: 182 VREDL 186
+RE+L
Sbjct: 288 LREEL 292
|
|
| UNIPROTKB|Q6P1R4 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
Identities = 77/185 (41%), Positives = 112/185 (60%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L++ ++ L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K
Sbjct: 124 DEWDLLQRMILLAHEKLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKG 183
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A W IKAV+ A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF
Sbjct: 184 PLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFE 243
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G A W +L EYL + ++P P +R+H+ KL ++
Sbjct: 244 GRSPAVW----------------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQE 287
Query: 182 VREDL 186
+RE+L
Sbjct: 288 LREEL 292
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| UNIPROTKB|E2R9L8 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
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| UNIPROTKB|H0YGW8 DUS1L "tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 8 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRK 67
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++CL +TG +GV+SAE L NPALF G A W
Sbjct: 68 AVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 118
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 119 -------ELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREEL 160
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| MGI|MGI:1915980 Dus1l "dihydrouridine synthase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 74/169 (43%), Positives = 107/169 (63%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T++YA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ ++DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVGIPVFANGNIQCLQDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQQLREEL 292
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| UNIPROTKB|J9NYR0 DUS1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 75/169 (44%), Positives = 106/169 (62%)
Query: 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77
L+VPV+CKIRVFP + T+KYA+MLE AGC LL VHGRT+++K A W IKAV+
Sbjct: 140 LSVPVTCKIRVFPEIDKTVKYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWEHIKAVRK 199
Query: 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISK 137
A+ IPV ANGN++ + DV++C+++TG +GV+SAE L NPALF G A W
Sbjct: 200 AVAIPVFANGNIQCLRDVERCIQDTGVQGVMSAEGNLHNPALFEGRSPAVW--------- 250
Query: 138 DGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDL 186
+L EYL + ++P P +R+H+ KL ++ +RE+L
Sbjct: 251 -------ELAEEYLDIVRQHPCPLSYVRAHLFKLWHHTLQVHQELREEL 292
|
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| FB|FBgn0031238 CG3645 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 82/193 (42%), Positives = 112/193 (58%)
Query: 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD 61
D L+ +V L L VPV+CKIR+F +L+ TI+YAKMLE AGC LL VHGRTR++K
Sbjct: 133 DEWELLTEIVSTLHAKLAVPVTCKIRIFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKG 192
Query: 62 GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121
A+WN IK V+ ++IP+LANGN+ ++DV +CL ETG +GV+SAE L NPA+F
Sbjct: 193 PLTGVANWNYIKNVRQHIKIPMLANGNILALDDVHRCLTETGVDGVMSAEGNLHNPAIFK 252
Query: 122 GFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPG 181
G W + EYL+L + +P P IR H+ KL I+
Sbjct: 253 GVSPPVW----------------QMAHEYLELVQLHPCPSSFIRGHLFKLFHHIMNIRQN 296
Query: 182 --VREDLNAQNRL 192
+R+ L N+L
Sbjct: 297 SELRQYLATANQL 309
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00019548001 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (413 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00032354001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (252 aa) | • | • | • | 0.810 | |||||
 | GSVIVG00018638001 | SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa) | • | 0.619 | |||||||
 | GSVIVG00038090001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa) | • | 0.607 | |||||||
 | GSVIVG00034559001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa) | • | 0.597 | |||||||
 | GSVIVG00021478001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (316 aa) | • | • | 0.577 | ||||||
 | GSVIVG00000661001 | SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (701 aa) | • | • | 0.570 | ||||||
 | GSVIVG00026600001 | SubName- Full=Chromosome chr12 scaffold_38, whole genome shotgun sequence; (229 aa) | • | 0.555 | |||||||
 | GSVIVG00005498001 | SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa) | • | 0.533 | |||||||
 | GSVIVG00028735001 | SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (477 aa) | • | 0.528 | |||||||
 | GSVIVG00020673001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa) | • | 0.525 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 230 | |||
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 5e-47 | |
| pfam01207 | 309 | pfam01207, Dus, Dihydrouridine synthase (Dus) | 7e-36 | |
| COG0042 | 323 | COG0042, COG0042, tRNA-dihydrouridine synthase [Tr | 1e-35 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 3e-25 | |
| PRK10550 | 312 | PRK10550, PRK10550, tRNA-dihydrouridine synthase C | 5e-14 | |
| PRK10415 | 321 | PRK10415, PRK10415, tRNA-dihydrouridine synthase B | 4e-12 | |
| cd02803 | 327 | cd02803, OYE_like_FMN_family, Old yellow enzyme (O | 6e-11 | |
| pfam00977 | 230 | pfam00977, His_biosynth, Histidine biosynthesis pr | 2e-05 | |
| COG0107 | 256 | COG0107, HisF, Imidazoleglycerol-phosphate synthas | 7e-05 | |
| cd04732 | 234 | cd04732, HisA, HisA | 8e-05 | |
| COG0106 | 241 | COG0106, HisA, Phosphoribosylformimino-5-aminoimid | 1e-04 | |
| cd04731 | 243 | cd04731, HisF, The cyclase subunit of imidazolegly | 3e-04 | |
| cd02932 | 336 | cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) Yqj | 0.002 | |
| PRK13475 | 443 | PRK13475, PRK13475, ribulose bisphosphate carboxyl | 0.003 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 154 bits (393), Expect = 5e-47
Identities = 50/129 (38%), Positives = 77/129 (59%), Gaps = 3/129 (2%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDE 59
+ + LV +V + + +PV+ KIR+ + ++ T++ AK LEDAG S L VHGRTR++
Sbjct: 105 LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ 164
Query: 60 KDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
ADW+ I +K A+ IPV+ANG++ +ED +CLE+TG +GV+ L NP L
Sbjct: 165 --RYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWL 222
Query: 120 FAGFRTAEW 128
F +
Sbjct: 223 FREIKELLE 231
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus) | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 7e-36
Identities = 71/213 (33%), Positives = 101/213 (47%), Gaps = 26/213 (12%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
LV +V+ + +++PV+ KIR+ + ++ ++ A+ +EDAG L VHGRTR
Sbjct: 109 LVAQIVKAVVKAVDIPVTVKIRIGWDESHENAVEIARRVEDAGAQALTVHGRTR--AQNY 166
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
+ ADW+AIK VK A+ IPV+ANG++ ED Q+CL TG +GV+ L NP LFA
Sbjct: 167 EGPADWDAIKQVKQAVSIPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQ 226
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEYL-KLCEKYP---------VPWRMIRSHVHKLLG 173
T + G D L E + E R R H+ L
Sbjct: 227 HTVKT----------GEFDPRPPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYL- 275
Query: 174 EWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206
+ F +R +LN T E L NL LR
Sbjct: 276 KGFPGAAELRRELNDVFDPT-EALINLDAALRA 307
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309 |
| >gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 1e-35
Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 16/199 (8%)
Query: 1 MDNLPLVKSLVEKL-ALNLNVPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTR 57
+ N L+ +V+ + ++PV+ KIR+ + D ++ A++LEDAG L VHGRTR
Sbjct: 117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTR 176
Query: 58 DEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116
G ADW+ IK +K A+ IPV+ANG+++ +ED ++ LE TG +GV+ L N
Sbjct: 177 --AQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGN 234
Query: 117 PALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP--VPWRMIRSHVHKLLGE 174
P LF E + E+ + D+L E+L+L +Y R +R H+ L
Sbjct: 235 PWLFRQIDYLE----TGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKG 290
Query: 175 WFRIQPGVREDLNAQNRLT 193
PG RE A N+
Sbjct: 291 L----PGARELRRALNKAE 305
|
Length = 323 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK 63
L+ +V+ + +++PV+ KIR+ + ++ A++ EDAG + +HGRTR + G
Sbjct: 118 LIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GY 175
Query: 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123
A+W+ I VK A+RIPV+ NG++ ED + LE TGC+GV+ L NP LF
Sbjct: 176 SGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFR-- 233
Query: 124 RTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKY---PVPWRMIRSHV-HKLLGEWFRIQ 179
+ +++ + ++ D ++ +L+L Y R+ R H+ L G
Sbjct: 234 QIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGF----- 288
Query: 180 PGV---REDLNAQNRLTFEFLYNLVDRL 204
PG R+ LN + +F+ + L+D
Sbjct: 289 PGNAALRQTLNHAS--SFQEVKQLLDDF 314
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 5e-14
Identities = 35/107 (32%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
Query: 15 ALNLNVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG-KKFRADWNAI 72
A+ ++PV+ K+R+ + + + + A ++ AG + L VHGRT++ DG + +W AI
Sbjct: 129 AVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE--DGYRAEHINWQAI 186
Query: 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
++ L IPV+ANG + + Q+C+ TGC+ V+ L P L
Sbjct: 187 GEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNL 233
|
Length = 312 |
| >gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 4e-12
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 6/118 (5%)
Query: 6 LVKSLVEKLALNLNVPVSCKIRV--FPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG 62
LVKS++ ++ ++VPV+ KIR P ++ ++ A++ ED G L +HGRTR +G
Sbjct: 120 LVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179
Query: 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
+ A++++I+AVK + IPV+ANG++ + L+ TG + ++ + P +F
Sbjct: 180 E---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIF 234
|
Length = 321 |
| >gnl|CDD|239201 cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-11
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 12/113 (10%)
Query: 19 NVPVSCKI---RVFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRAD 68
+ PV ++ P L++ I+ AK LE+AG L V G + +
Sbjct: 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEG 267
Query: 69 WNA--IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ + +K A++IPV+A G +R E ++ L E + V +LL +P L
Sbjct: 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDL 320
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. Length = 327 |
| >gnl|CDD|216225 pfam00977, His_biosynth, Histidine biosynthesis protein | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 10/86 (11%)
Query: 34 DTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVR 90
D +++AK LE+ G L + +DG D + + A+ IPV+A+G V
Sbjct: 149 DAVEWAKKLEELGAGEILLTDID------RDGTLSGPDLELTRELAEAVNIPVIASGGVG 202
Query: 91 HMEDVQKCLEETGCEGVLSAESLLEN 116
+ED+++ L G +GV++ +L E
Sbjct: 203 SLEDLKE-LFSEGVDGVIAGSALHEG 227
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalyzed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel . This family belong to the common phosphate binding site TIM barrel family. Length = 230 |
| >gnl|CDD|223185 COG0107, HisF, Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 7e-05
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 34 DTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91
D +++AK +E+ AG LL T ++DG K D +AV+ A+ IPV+A+G
Sbjct: 156 DAVEWAKEVEELGAGEILL-----TSMDRDGTKAGYDLELTRAVREAVNIPVIASGGAGK 210
Query: 92 MEDVQKCLEETGCEGVLSA 110
E + E + L+A
Sbjct: 211 PEHFVEAFTEGKADAALAA 229
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Length = 256 |
| >gnl|CDD|240083 cd04732, HisA, HisA | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-05
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 95
+ AK E+ G + T +DG ++ K + A IPV+A+G V ++D+
Sbjct: 149 EELAKRFEELGVKAIIY---TDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDI 205
Query: 96 QKCLEETGCEGVLSAESLLEN 116
+ L+E G GV+ ++L E
Sbjct: 206 KA-LKELGVAGVIVGKALYEG 225
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Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''- phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. Length = 234 |
| >gnl|CDD|223184 COG0106, HisA, Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 39 AKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 97
AK LE+ G + + D +DG + + +K + A+ IPV+A+G V ++D++
Sbjct: 153 AKRLEEVGLAHILYT----DISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKA 208
Query: 98 CLEETGCEGVLSAESLLEN 116
E +G EGV+ +L E
Sbjct: 209 LKELSGVEGVIVGRALYEG 227
|
Length = 241 |
| >gnl|CDD|240082 cd04731, HisF, The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-04
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 34 DTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91
D +++AK +E+ G LL T ++DG K D I+AV +A+ IPV+A+G
Sbjct: 150 DAVEWAKEVEELGAGEILL-----TSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGK 204
Query: 92 MEDVQKCLEETGCEGVLSA 110
E + EE G + L+A
Sbjct: 205 PEHFVEAFEEGGADAALAA 223
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4- carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. Length = 243 |
| >gnl|CDD|239242 cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.002
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 8/91 (8%)
Query: 32 LQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86
L+D+++ AK L++ G L+ V + G ++ + A + ++ IPV+A
Sbjct: 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPV-GPGYQVPF-A-ERIRQEAGIPVIAV 296
Query: 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENP 117
G + E + LE + V LL NP
Sbjct: 297 GLITDPEQAEAILESGRADLVALGRELLRNP 327
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. Length = 336 |
| >gnl|CDD|184072 PRK13475, PRK13475, ribulose bisphosphate carboxylase; Provisional | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.003
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-------NALRIP----V 83
T+ Y KM E + + RD G + +W +K NALR+P
Sbjct: 324 TMGYGKM-EGEADDRVIAYMIERDSAQGPFYHQEWYGMKPTTPIISGGMNALRLPGFFDN 382
Query: 84 LANGNV 89
L +GNV
Sbjct: 383 LGHGNV 388
|
Length = 443 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 100.0 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 100.0 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 100.0 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 100.0 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 100.0 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 100.0 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 100.0 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 100.0 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 99.94 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.91 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.91 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.91 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 99.88 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.85 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.83 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.81 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 99.81 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 99.81 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.8 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 99.8 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.79 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 99.79 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.79 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 99.78 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 99.78 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.77 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 99.75 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.74 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 99.74 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 99.73 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 99.71 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 99.69 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.68 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.67 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 99.66 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 99.66 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 99.64 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.59 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.59 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.58 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.57 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.55 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.54 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.53 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.51 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.51 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 99.5 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.47 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.47 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 99.46 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.46 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.46 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 99.4 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 99.4 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.38 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.36 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.36 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 99.36 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.35 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.35 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 99.32 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.3 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 99.29 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 99.25 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.25 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.25 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.23 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.23 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.23 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 99.18 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 99.18 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.11 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.11 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.07 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 99.07 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.06 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.05 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.97 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.97 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 98.96 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.95 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 98.92 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.91 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.91 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.91 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.91 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 98.9 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.89 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 98.89 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 98.88 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.87 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.84 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.83 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 98.83 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.82 | |
| PLN02535 | 364 | glycolate oxidase | 98.81 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.77 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.77 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.77 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 98.77 | |
| PLN02979 | 366 | glycolate oxidase | 98.75 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.72 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.72 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.72 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.69 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.69 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.68 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 98.68 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 98.68 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 98.67 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 98.65 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.65 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.62 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.61 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.6 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.59 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.57 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.54 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 98.53 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.53 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.5 | |
| cd03319 | 316 | L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat | 98.47 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.47 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.46 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.44 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.44 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 98.44 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 98.43 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.4 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 98.38 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.37 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 98.37 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.37 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 98.37 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 98.33 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.33 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 98.32 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.32 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 98.3 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 98.28 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.28 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.26 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.25 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 98.25 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 98.25 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 98.23 | |
| cd03315 | 265 | MLE_like Muconate lactonizing enzyme (MLE) like su | 98.22 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.22 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 98.22 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.19 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 98.17 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 98.17 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.17 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.16 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.15 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 98.15 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.14 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.14 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 98.12 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.12 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.11 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.08 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 98.08 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 98.07 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 98.06 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 98.06 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 98.04 | |
| PLN02591 | 250 | tryptophan synthase | 98.01 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 98.0 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 97.99 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 97.97 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 97.97 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 97.96 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 97.96 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.94 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 97.94 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 97.91 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 97.91 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 97.89 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.88 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 97.88 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 97.83 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 97.79 | |
| KOG0134 | 400 | consensus NADH:flavin oxidoreductase/12-oxophytodi | 97.75 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 97.73 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 97.71 | |
| PLN02979 | 366 | glycolate oxidase | 97.67 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 97.65 | |
| PLN02535 | 364 | glycolate oxidase | 97.65 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 97.64 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 97.6 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 97.58 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 97.57 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 97.57 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 97.56 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 97.53 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 97.52 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 97.49 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 97.49 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 97.49 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 97.48 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 97.47 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.47 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.46 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 97.45 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 97.44 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 97.44 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.43 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 97.4 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.4 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 97.4 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 97.39 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 97.39 | |
| cd03321 | 355 | mandelate_racemase Mandelate racemase (MR) catalyz | 97.39 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 97.39 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.36 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.36 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 97.36 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 97.35 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.34 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.33 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 97.3 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 97.3 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 97.29 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 97.29 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 97.29 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 97.28 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 97.27 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 97.27 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 97.26 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.25 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 97.25 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 97.24 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 97.23 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 97.23 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 97.21 | |
| PRK08005 | 210 | epimerase; Validated | 97.21 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 97.2 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 97.2 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 97.2 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 97.2 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 97.17 | |
| cd03329 | 368 | MR_like_4 Mandelate racemase (MR)-like subfamily o | 97.17 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 97.15 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 97.14 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 97.14 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.11 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 97.1 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 97.09 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 97.05 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.04 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 97.03 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 97.02 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 97.02 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 97.0 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 96.97 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.95 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 96.94 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 96.94 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 96.91 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.89 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.88 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 96.86 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 96.86 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 96.85 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.85 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.83 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 96.81 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 96.81 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.8 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 96.79 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.77 | |
| cd03328 | 352 | MR_like_3 Mandelate racemase (MR)-like subfamily o | 96.77 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 96.76 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.75 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 96.74 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 96.72 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.69 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 96.68 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 96.66 | |
| cd03325 | 352 | D-galactonate_dehydratase D-galactonate dehydratas | 96.66 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 96.64 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.64 | |
| TIGR02534 | 368 | mucon_cyclo muconate and chloromuconate cycloisome | 96.62 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 96.6 | |
| cd03326 | 385 | MR_like_1 Mandelate racemase (MR)-like subfamily o | 96.6 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.58 | |
| PRK14017 | 382 | galactonate dehydratase; Provisional | 96.58 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 96.57 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 96.57 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 96.55 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 96.54 | |
| cd03327 | 341 | MR_like_2 Mandelate racemase (MR)-like subfamily o | 96.49 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 96.48 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 96.46 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 96.44 | |
| PRK06852 | 304 | aldolase; Validated | 96.43 | |
| cd03324 | 415 | rTSbeta_L-fuconate_dehydratase Human rTS beta is e | 96.42 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 96.36 | |
| PRK15072 | 404 | bifunctional D-altronate/D-mannonate dehydratase; | 96.34 | |
| cd03318 | 365 | MLE Muconate Lactonizing Enzyme (MLE), an homoocta | 96.33 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 96.31 | |
| cd03323 | 395 | D-glucarate_dehydratase D-Glucarate dehydratase (G | 96.31 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 96.29 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 96.27 | |
| cd03322 | 361 | rpsA The starvation sensing protein RpsA from E.co | 96.26 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 96.22 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 96.2 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.16 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 96.14 | |
| PRK02901 | 327 | O-succinylbenzoate synthase; Provisional | 96.12 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 96.1 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.08 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 96.07 | |
| PRK02714 | 320 | O-succinylbenzoate synthase; Provisional | 96.06 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 96.05 | |
| cd00308 | 229 | enolase_like Enolase-superfamily, characterized by | 96.04 | |
| PRK15440 | 394 | L-rhamnonate dehydratase; Provisional | 96.04 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.03 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 96.02 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.0 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.99 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.98 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 95.97 | |
| TIGR01927 | 307 | menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe | 95.96 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 95.95 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 95.95 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 95.9 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 95.9 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 95.86 | |
| TIGR03247 | 441 | glucar-dehydr glucarate dehydratase. Glucarate deh | 95.83 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 95.83 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 95.8 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 95.79 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.78 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.78 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 95.71 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 95.68 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.68 | |
| cd03320 | 263 | OSBS o-Succinylbenzoate synthase (OSBS) catalyzes | 95.63 | |
| COG4948 | 372 | L-alanine-DL-glutamate epimerase and related enzym | 95.61 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 95.59 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.58 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 95.56 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.47 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 95.46 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 95.41 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 95.37 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 95.36 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 95.36 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 95.33 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 95.26 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.25 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 95.25 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.21 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 95.2 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.19 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.18 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 95.13 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 95.11 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 95.08 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.08 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 95.06 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 95.03 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.03 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 95.02 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 94.99 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 94.98 | |
| cd03317 | 354 | NAAAR N-acylamino acid racemase (NAAAR), an octame | 94.95 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 94.8 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 94.77 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.75 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 94.75 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 94.74 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 94.74 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 94.73 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 94.72 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 94.71 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.69 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 94.69 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 94.65 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 94.62 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 94.57 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 94.55 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 94.48 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.47 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 94.47 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 94.43 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 94.43 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 94.43 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 94.42 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 94.41 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 94.39 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 94.37 | |
| PLN03033 | 290 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.33 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 94.33 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 94.32 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 94.32 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.28 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 94.23 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 94.19 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 94.16 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.15 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 94.13 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 94.13 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 94.12 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.08 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 94.08 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 94.07 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 94.07 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 94.06 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 94.01 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 93.98 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 93.98 | |
| PRK05105 | 322 | O-succinylbenzoate synthase; Provisional | 93.93 | |
| PLN02591 | 250 | tryptophan synthase | 93.92 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 93.91 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.91 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 93.86 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.8 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.78 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 93.78 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 93.71 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.71 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 93.64 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 93.63 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 93.53 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 93.51 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 93.5 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 93.49 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 93.47 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 93.42 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 93.42 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 93.4 | |
| PF00793 | 270 | DAHP_synth_1: DAHP synthetase I family; InterPro: | 93.35 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 93.35 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 93.31 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 93.31 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 93.26 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 93.26 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 93.26 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 93.15 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 93.1 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 93.03 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 93.02 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 92.99 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 92.88 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 92.86 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 92.81 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.79 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 92.77 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 92.75 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 92.74 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 92.71 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.7 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 92.69 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.64 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 92.61 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 92.58 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 92.47 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.42 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.42 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 92.35 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 92.33 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 92.31 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 92.28 | |
| PRK14057 | 254 | epimerase; Provisional | 92.26 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 92.24 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 92.22 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 92.12 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 92.11 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 92.06 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.02 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 91.96 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 91.92 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 91.92 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 91.88 | |
| TIGR01502 | 408 | B_methylAsp_ase methylaspartate ammonia-lyase. Thi | 91.74 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 91.73 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 91.73 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 91.7 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 91.7 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 91.68 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 91.62 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 91.61 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 91.52 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 91.51 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 91.41 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 91.28 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.28 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 91.25 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 91.23 | |
| PF01188 | 67 | MR_MLE: Mandelate racemase / muconate lactonizing | 91.19 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 91.18 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 91.13 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 91.11 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 91.04 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 90.96 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 90.91 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 90.77 |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=305.84 Aligned_cols=198 Identities=32% Similarity=0.469 Sum_probs=178.9
Q ss_pred CCChHHHHHHHHHHhhcCC-ceEEEEECCCCChHH--HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 1 MDNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~--~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
|++|+++.+||++++++++ +|||||||+||+..+ +.++++.++++|+++|+||+||+.|+ |.+++||++|+++++
T Consensus 117 l~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~--y~~~ad~~~I~~vk~ 194 (323)
T COG0042 117 LKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG--YLGPADWDYIKELKE 194 (323)
T ss_pred cCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc--CCCccCHHHHHHHHH
Confidence 7899999999999999995 999999999997665 88999999999999999999999985 567899999999999
Q ss_pred hCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 78 ALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 78 ~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
.++ +|||+||||+|++|+.++|+.+||||||+|||+++|||+|+++ ++..+|+..+ ++..+..+++.+|++...+
T Consensus 195 ~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i---~~~~~g~~~~-~~~~e~~~~~~~~~~~~~~ 270 (323)
T COG0042 195 AVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI---DYLETGELLP-PTLAEVLDILREHLELLLE 270 (323)
T ss_pred hCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH---HHhhcCCCCC-CCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999987 5555666544 7788999999999997765
Q ss_pred CC--ChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHHh
Q 026945 157 YP--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 207 (230)
Q Consensus 157 ~~--~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 207 (230)
+. ..++.+|+|+.+|+++ +++...+|+.+++.. +..++.++++.+...
T Consensus 271 ~~~~~~~~~~r~h~~~~~~~-~~~a~~~r~~~~~~~--~~~~~~~~l~~~~~~ 320 (323)
T COG0042 271 YYGKKGLRRLRKHLGYYLKG-LPGARELRRALNKAE--DGAEVRRALEAVFEE 320 (323)
T ss_pred hccccHHHHHHHHHHHHhhc-CccHHHHHHHHhccC--cHHHHHHHHHHHHhh
Confidence 54 5689999999999998 789999999999987 899888888877654
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=290.08 Aligned_cols=199 Identities=25% Similarity=0.361 Sum_probs=177.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChH--HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~--~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|+||+++.+|++++++++++||++|+|+||+.+ ++.++++.++++|+++|+||+||+.+. +.|+++|+.++++++.
T Consensus 115 l~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~--~~G~a~~~~i~~ik~~ 192 (321)
T PRK10415 115 LQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL--FNGEAEYDSIRAVKQK 192 (321)
T ss_pred hcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccc--cCCCcChHHHHHHHHh
Confidence 579999999999999999999999999998643 688999999999999999999998764 5678999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh-C
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-Y 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~-~ 157 (230)
+++|||+||||.|++|+.++++.+|||+||||||+++|||+|++++ .+...|+..+++++.++.+++.+|++.+.+ |
T Consensus 193 ~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (321)
T PRK10415 193 VSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQ--HYLDTGELLPPLPLAEVKRLLCAHVRELHDFY 270 (321)
T ss_pred cCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHH--HHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998899999999999999999999886 345556665566778899999999996654 4
Q ss_pred CC--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 158 PV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 158 ~~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+. ++..+|+|+.||+++ +++...+|+.+++++ +++++.++++++..
T Consensus 271 ~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 318 (321)
T PRK10415 271 GPAKGYRIARKHVSWYLQE-HAPNDQFRRTFNAIE--DASEQLEALEAYFE 318 (321)
T ss_pred ChHHHHHHHHHHHHHHHhc-CCchHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 54 478999999999998 799999999999998 99999999998764
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=286.17 Aligned_cols=191 Identities=23% Similarity=0.391 Sum_probs=168.9
Q ss_pred CCChHHHHHHHHHHhhcC--CceEEEEECCCCCh-HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNL--NVPVSCKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVK 76 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~-~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~ 76 (230)
|++|+++.+|++++++++ ++|||||+|+||+. +++.++++.++++|+++|+||+||+.| +|+++ ++|+.+++++
T Consensus 113 l~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~y~g~~~~~~~i~~ik 190 (312)
T PRK10550 113 LKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--GYRAEHINWQAIGEIR 190 (312)
T ss_pred hcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--CCCCCcccHHHHHHHH
Confidence 579999999999999988 49999999999853 458899999999999999999999986 46676 4999999999
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
+.+++||++||||+|++|+.++++.+|||+||||||+++|||+|++++. |+ ++++..++++++.+|+++...
T Consensus 191 ~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~------g~--~~~~~~e~~~~~~~~~~~~~~ 262 (312)
T PRK10550 191 QRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKY------NE--PRMPWPEVVALLQKYTRLEKQ 262 (312)
T ss_pred hhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhc------CC--CCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998999999999999999999998864 22 235677888999999987554
Q ss_pred CC-C--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHH
Q 026945 157 YP-V--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRL 204 (230)
Q Consensus 157 ~~-~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~ 204 (230)
+. . .+..||+|+.||+++ +++..++|+.+++++ +.+++.++++++
T Consensus 263 ~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~i~~~~--~~~e~~~~~~~~ 310 (312)
T PRK10550 263 GDTGLYHVARIKQWLGYLRKE-YDEATELFQEIRALN--NSPDIARAIQAI 310 (312)
T ss_pred cCcchhHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHhh
Confidence 43 2 377899999999998 799999999999998 999999998865
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=284.40 Aligned_cols=204 Identities=44% Similarity=0.620 Sum_probs=176.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|.+|+++.++|++++..+++|||||||++.|.+++++++++++++|++.++|||||+.|+....+++||+.|+.|++.++
T Consensus 123 ~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~ 202 (358)
T KOG2335|consen 123 MDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVP 202 (358)
T ss_pred ccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCc
Confidence 67999999999999999999999999999999999999999999999999999999999866688999999999999998
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhhCCC
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 159 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~~~~ 159 (230)
+||++||||.+++|+..++++||+||||+|||+|.|||+|.... + . ....+++.+|++++.+++.
T Consensus 203 ~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~---~-----~------~~~~~~~~~~l~~~~e~~g 268 (358)
T KOG2335|consen 203 DIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAG---Y-----G------PTPWGCVEEYLDIAREFGG 268 (358)
T ss_pred CCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCC---C-----C------CCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999996511 1 0 1235789999999988874
Q ss_pred h--hHHHHHHHHHHHhhhcCCCHHHHHHHHhcC-ccCHHHHHH-HHHHHHHhCCCCCCccCcc
Q 026945 160 P--WRMIRSHVHKLLGEWFRIQPGVREDLNAQN-RLTFEFLYN-LVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 160 ~--~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 218 (230)
. +..+|.|+++|++.++.-++.+|..++..+ ..++.++.+ ++..+...+.+.+......
T Consensus 269 ~~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~~~~~~l~~~~~~v~~~~~d~~~~~~~~ 331 (358)
T KOG2335|consen 269 LSSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCESVIDFLEELVLMVRKRVEDGFGRGVEE 331 (358)
T ss_pred CchhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchhhHHHHHHHHHHHHHhhhccccccCccc
Confidence 4 899999999999999998888999998876 224555444 6666777777776655544
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=290.53 Aligned_cols=194 Identities=34% Similarity=0.521 Sum_probs=153.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|+||+++.+|++++++++++|||||+|+|++ .+++.++++.++++|+++|+||+||+.|+ +.+++||+.++++++.
T Consensus 104 l~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~--~~~~a~w~~i~~i~~~ 181 (309)
T PF01207_consen 104 LKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR--YKGPADWEAIAEIKEA 181 (309)
T ss_dssp GC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC--CTS---HHHHHHCHHC
T ss_pred hcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc--CCcccchHHHHHHhhc
Confidence 6899999999999999999999999999987 67899999999999999999999999986 5679999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHh-hC
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCE-KY 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~-~~ 157 (230)
+++||++||||+|++|+.++++++||||||||||++.|||+|++..... .+...+.++..+..+++.+|++... .|
T Consensus 182 ~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (309)
T PF01207_consen 182 LPIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIK---EGEPEPFPPIAERLDIILRHYDYMEEFY 258 (309)
T ss_dssp -TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHH---HHTT--S--HHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhc---cCCCCCCCchhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999522111 1222223335678999999999654 34
Q ss_pred C--ChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHH
Q 026945 158 P--VPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVD 202 (230)
Q Consensus 158 ~--~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~ 202 (230)
+ ..+..+++|+.+|+++ +++...+|+.++++. +.+++.+.++
T Consensus 259 ~~~~~~~~~~k~~~~y~~~-~~~~~~~r~~l~~~~--~~~e~~~~l~ 302 (309)
T PF01207_consen 259 GEEKALRQMRKHLKWYFKG-FPGARKFRRELNKCK--TLEEFLELLE 302 (309)
T ss_dssp HCCHHHHHHHTTCCCCTTT-STTHHHHHHHHCCH---SHHHHHHHH-
T ss_pred ccCchHHHHHHHHHHHHcc-CCcHHHHHHHHHhhC--CHHHHhhhhc
Confidence 3 3588999999999987 788899999999998 9999988888
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=272.97 Aligned_cols=198 Identities=18% Similarity=0.254 Sum_probs=163.4
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh----HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-------CcccH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-------FRADW 69 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~----~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-------~~~~~ 69 (230)
|++|+++.+|++++++++++|||||+|+|++. +++.++++.++++|+++|+||+||+.. .+++ ++++|
T Consensus 105 l~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~-qg~sg~~~~~~~~~~~ 183 (318)
T TIGR00742 105 MGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWL-SGLSPKENREIPPLRY 183 (318)
T ss_pred hcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhh-cCCCccccccCCchhH
Confidence 68999999999999999999999999999853 567899999999999999999999732 1233 34699
Q ss_pred HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHH
Q 026945 70 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLV 148 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (230)
+.++++++.+ ++|||+||||+|++|+.+++. ||||||||||++.|||+|.++... +..+ ..++++..+..+.++
T Consensus 184 ~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~~--l~~~-~~~~~~~~e~~~~~~ 258 (318)
T TIGR00742 184 ERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDRE--IFNE-TDEILTRKEIVEQML 258 (318)
T ss_pred HHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHHH--hcCC-CCCCCCHHHHHHHHH
Confidence 9999999988 799999999999999999995 899999999999999999998643 3333 333456678888889
Q ss_pred HHHHHHhhCCChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 149 EYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 149 ~yl~~~~~~~~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+|++....++..++.+|+|+.||+++ +++...||+++++..... ....++++....
T Consensus 259 ~~~~~~~~~~~~~~~~rk~~~~y~~g-~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~ 314 (318)
T TIGR00742 259 PYIEEYLSQGLSLNHITRHLLGLFQG-KPGAKQWRRYLSENAPKA-GAGIEVLETALE 314 (318)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHcc-CCCHHHHHHHHHhcccCC-CCcHHHHHHHHH
Confidence 99886655555689999999999997 799999999999865211 245566666553
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=262.80 Aligned_cols=199 Identities=30% Similarity=0.509 Sum_probs=174.4
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++|+++.+|++++++.+++||+||+|+|++. .++.++++.++++|+++|+||+|+..+ ++.++++|+.++++++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~--~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--GYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc--cCCCchhHHHHHHHHHc
Confidence 46899999999999999999999999998753 357899999999999999999998875 46678999999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH-hhC
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKY 157 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~-~~~ 157 (230)
+++||++||||.|++|+.++++.+|||+||+|||++.|||+|.+++. +...+...++++..++++++.+|++.+ +.|
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~--~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 268 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ--YLTTGKYKPPPTFAEKLDAILRHLQLLADYY 268 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH--HHhCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988999999999999999999998863 333344444567778999999999975 445
Q ss_pred CC--hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHH
Q 026945 158 PV--PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLRE 206 (230)
Q Consensus 158 ~~--~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~ 206 (230)
+. .+..+|+|+.+|+++ +++.+.+|+.|++++ +++++.++++++..
T Consensus 269 ~~~~~~~~~r~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 269 GESKGLRIARKHIAWYLKG-FPGNAALRQTLNHAS--SFQEVKQLLDDFFE 316 (319)
T ss_pred CcchHHHHHHHHHHHHHhc-CCcHHHHHHHHHcCC--CHHHHHHHHHHHHh
Confidence 53 488999999999986 799999999999998 99999999998765
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=249.25 Aligned_cols=184 Identities=18% Similarity=0.268 Sum_probs=155.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh----HHHHHHHHHHHHcCCCEEEEecCCCC-CcC-----CCCCcccHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRD-EKD-----GKKFRADWN 70 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~----~~~~~~a~~l~~~G~~~i~vh~rt~~-~~~-----~~~~~~~~~ 70 (230)
|++|+++.+|++++++++++||+||+|++++. .++.++++.++++|+++|+||+|+.. +.+ ...++++|+
T Consensus 115 ~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~ 194 (333)
T PRK11815 115 MAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYD 194 (333)
T ss_pred hcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHH
Confidence 57999999999999999999999999998642 46789999999999999999999863 211 122568999
Q ss_pred HHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 71 AIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 71 ~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
.++++++.+ ++|||+||||+|++|+.++++ ||||||||||++.|||+|+++....+ |...++++..+.++.+.+
T Consensus 195 ~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 269 (333)
T PRK11815 195 RVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELF---GEPAPPLSRSEVLEAMLP 269 (333)
T ss_pred HHHHHHHhCCCCeEEEECCcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhc---CCCCCCCCHHHHHHHHHH
Confidence 999999986 899999999999999999997 69999999999999999999864322 333334567788888888
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 026945 150 YLKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQN 190 (230)
Q Consensus 150 yl~~~~~~~~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~ 190 (230)
|++....++..+..+|+|+.+|+++ +++...||+.+++..
T Consensus 270 ~~~~~~~~~~~~~~~rk~~~~y~~~-~~~~~~~r~~~~~~~ 309 (333)
T PRK11815 270 YIERHLAQGGRLNHITRHMLGLFQG-LPGARAWRRYLSENA 309 (333)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHcC-CCCHHHHHHHHHhhc
Confidence 8886655666689999999999998 799999999998874
|
|
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-26 Score=205.45 Aligned_cols=162 Identities=17% Similarity=0.337 Sum_probs=134.7
Q ss_pred CCChHHHHHHHHHHhhcCC-ceEEEEECCCC--ChHHHHHHHHHHH-HcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLE-DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~--~~~~~~~~a~~l~-~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
|.+|..+.++++++...++ +|||||||.|. +..-+.+++..+. +.|++++|+|||++.|+ |+..+||++|.++.
T Consensus 371 l~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~savTlHGRSRqQR--YTK~AnWdYi~e~a 448 (614)
T KOG2333|consen 371 LNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQQR--YTKSANWDYIEECA 448 (614)
T ss_pred hcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceEEecCchhhhh--hhcccChHHHHHHH
Confidence 5789999999999988774 69999999985 3345667777777 99999999999999987 56689999999998
Q ss_pred hhC-C-ccEEEcCCCCCHHHHHHHHHhhC-CcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHH
Q 026945 77 NAL-R-IPVLANGNVRHMEDVQKCLEETG-CEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKL 153 (230)
Q Consensus 77 ~~~-~-ipvi~nGgI~s~~da~~~l~~~g-adgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~ 153 (230)
+.. + +|+|+||||.|++|..+.+.+++ +|+||||||+|-.||||.+++...++ ..+..+++++++.|.++
T Consensus 449 ~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~w-------D~sSteRldiL~df~ny 521 (614)
T KOG2333|consen 449 DKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHW-------DISSTERLDILKDFCNY 521 (614)
T ss_pred HhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcC-------CccchHHHHHHHHHHhh
Confidence 875 3 89999999999999988888766 99999999999999999999875432 35677999999999998
Q ss_pred H-hhCCC---hhHHHHHHHHHH
Q 026945 154 C-EKYPV---PWRMIRSHVHKL 171 (230)
Q Consensus 154 ~-~~~~~---~~~~~r~h~~~~ 171 (230)
. ++||. .+...|+++..+
T Consensus 522 GLeHWGSDt~GVetTRRFlLE~ 543 (614)
T KOG2333|consen 522 GLEHWGSDTKGVETTRRFLLEF 543 (614)
T ss_pred hhhhcCCccccHHHHHHHHHHH
Confidence 6 56664 255566665443
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=179.56 Aligned_cols=109 Identities=25% Similarity=0.299 Sum_probs=98.6
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|+||+++.++++++++ .++||+||+|++++..++.++++.++++|+++|+||.+... .+.++|+.|+++++.++
T Consensus 117 l~dp~~l~~iv~av~~-~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g-----~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 117 LKNKELLKEFLTKMKE-LNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPG-----KPYADMDLLKILSEEFN 190 (231)
T ss_pred cCCHHHHHHHHHHHHc-CCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCC-----CchhhHHHHHHHHHhcC
Confidence 5799999999999995 58999999999887678999999999999999999975432 12389999999999985
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+|||+||||+|++|+.++++ +|||+||+|||++.|
T Consensus 191 ~ipIIgNGgI~s~eda~e~l~-~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 191 DKIIIGNNSIDDIESAKEMLK-AGADFVSVARAILKG 226 (231)
T ss_pred CCcEEEECCcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence 99999999999999999998 899999999999976
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.8e-24 Score=180.06 Aligned_cols=122 Identities=41% Similarity=0.679 Sum_probs=112.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+|+++.++++++++.+++||+||+|.+|+.. ++.++++.++++|+++|+||+|+..+. +.++++|+.++++++.++
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~--~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQR--YSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHHc--CCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999999999998765 899999999999999999999997653 445789999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+||++||||.|++|+.++++.+|||+||+||+++.|||+|+++..
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~ 228 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence 999999999999999999987899999999999999999998764
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-24 Score=180.55 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=99.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|+||+++.++++++++ .++||+||+|++++ .++.++++.++++|++.|+++.+ .+ + +.+||+.|++++ ++
T Consensus 122 l~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~ihv~~~--~~--g--~~ad~~~I~~i~--~~ 191 (233)
T cd02911 122 LKDPERLSEFIKALKE-TGVPVSVKIRAGVD-VDDEELARLIEKAGADIIHVDAM--DP--G--NHADLKKIRDIS--TE 191 (233)
T ss_pred cCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEEEECcC--CC--C--CCCcHHHHHHhc--CC
Confidence 5799999999999998 59999999999998 78999999999999998776543 21 1 268999999997 78
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+|||+||||+|++|+.++++ +|||+||+||+ .|||+|+++.
T Consensus 192 ipVIgnGgI~s~eda~~~l~-~GaD~VmiGR~--~~p~~~~~~~ 232 (233)
T cd02911 192 LFIIGNNSVTTIESAKEMFS-YGADMVSVARA--SLPENIEWLV 232 (233)
T ss_pred CEEEEECCcCCHHHHHHHHH-cCCCEEEEcCC--CCchHHHHhh
Confidence 99999999999999999998 89999999999 9999998764
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-22 Score=177.61 Aligned_cols=167 Identities=26% Similarity=0.451 Sum_probs=147.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+.+|+.+..|+.++.+...+||+||||+.++.++++++++.+.+.|+..|+||+||+++++. .+++-++++.+.+.++
T Consensus 131 Lt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~--~~~~~~~i~~i~~~~~ 208 (477)
T KOG2334|consen 131 LTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCRTRDERNQ--EPATKDYIREIAQACQ 208 (477)
T ss_pred hcCHHHHHHHHHHHHhcCcccceeEEEecCCcccHHHHHHHHHhcCCceEEEEeeccccCCC--CCCCHHHHHHHHHHhc
Confidence 47899999999999999999999999999999999999999999999999999999998643 4788899999999987
Q ss_pred -ccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 81 -IPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 81 -ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
|||++||+..+ +.|+....+.+|+++|||+|.+..||.+|..- +..+..+.+++|++++.+
T Consensus 209 ~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~e---------------G~~~~~~~~~~fl~~a~~ 273 (477)
T KOG2334|consen 209 MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREE---------------GCLSEKEVIREFLRLAVQ 273 (477)
T ss_pred cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeec---------------CCchHHHHHHHHHHHHHH
Confidence 99999999988 78888888889999999999999999999952 234567889999999999
Q ss_pred CCChhHHHHHHHHHHHhhhcCCCHHHHH
Q 026945 157 YPVPWRMIRSHVHKLLGEWFRIQPGVRE 184 (230)
Q Consensus 157 ~~~~~~~~r~h~~~~l~~~~~~~~~~r~ 184 (230)
|.+.....+..+..++.+.+.+.|..+.
T Consensus 274 ~dn~~~ntkycl~~il~~~~~~~p~~~~ 301 (477)
T KOG2334|consen 274 YDNHYGNTKYCLQRILRGIQEGCPRGKR 301 (477)
T ss_pred HhhcccchhHHHHHHhhhhhccCchhhH
Confidence 9888888899998888887666665543
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=168.95 Aligned_cols=122 Identities=22% Similarity=0.260 Sum_probs=104.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCCc
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~~ 66 (230)
+.+|+++.++++++++.+++||+||+|. +.++..++++.++++|+|+|++|+++... ..+++|+
T Consensus 139 ~~~~~~~~eiv~~vr~~~~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~ 216 (300)
T TIGR01037 139 GQDPELSADVVKAVKDKTDVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGP 216 (300)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccch
Confidence 4689999999999999999999999995 44678899999999999999999654210 1234555
Q ss_pred ccH----HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 67 ADW----NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 67 ~~~----~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+.| +.++++++.+++|||+||||.|++|+.+++. +|||+||+||+++.|||+|.++..
T Consensus 217 ~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~i~~ 278 (300)
T TIGR01037 217 AIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKKIIE 278 (300)
T ss_pred hhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHHHHH
Confidence 544 7889999999999999999999999999997 899999999999999999998753
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.4e-20 Score=163.58 Aligned_cols=119 Identities=18% Similarity=0.268 Sum_probs=105.0
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe---------------------cCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---------------------GRTRDE 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh---------------------~rt~~~ 59 (230)
++||+.+.++++++++.+++||+||+|. +..+..++++.++++|++.|+++ +|+..
T Consensus 150 ~~~~~~~~~iv~~v~~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~- 226 (299)
T cd02940 150 GQDPELVEEICRWVREAVKIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTY- 226 (299)
T ss_pred ccCHHHHHHHHHHHHHhcCCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCc-
Confidence 4689999999999999999999999996 44578899999999999999854 44443
Q ss_pred cCCCCCccc----HHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchh
Q 026945 60 KDGKKFRAD----WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 124 (230)
Q Consensus 60 ~~~~~~~~~----~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~ 124 (230)
.+++|++. |+.++++++.+ ++|||+||||.|.+|+.+++. +|||+||+||+++. .|.++.++.
T Consensus 227 -gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i~ 296 (299)
T cd02940 227 -GGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDMC 296 (299)
T ss_pred -CcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHHh
Confidence 35777776 89999999999 899999999999999999997 99999999999998 899998765
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=158.24 Aligned_cols=122 Identities=21% Similarity=0.335 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--------------CCCCCc-
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKFR- 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------~~~~~~- 66 (230)
++|+.+.++++++++.+++||++|++.+.+.+++.++++.++++|+|+|++|+++.... .++++.
T Consensus 145 ~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~ 224 (289)
T cd02810 145 QDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAP 224 (289)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHH
Confidence 58999999999999999999999999988878899999999999999999998764210 112222
Q ss_pred ---ccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 67 ---ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 67 ---~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
..+++++++++.+ ++||+++|||+|++|+.+++. .|||+||+||+++.| |++|.++.
T Consensus 225 ~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i~ 287 (289)
T cd02810 225 IRPLALRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKIK 287 (289)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHHh
Confidence 2578899999998 899999999999999999997 899999999999999 99999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=163.08 Aligned_cols=125 Identities=15% Similarity=0.220 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC--------ChHHHHHHHHHHHHcC-CCEEEEecCCCCCc--------C-CCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP--------NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEK--------D-GKK 64 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~--------~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~--------~-~~~ 64 (230)
+.+++.+|+++|+++++.+++||+|+++ +.++++++++.|+++| +|+|+||+++.... . .+.
T Consensus 190 R~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~ 269 (343)
T cd04734 190 RMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMP 269 (343)
T ss_pred HhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCC
Confidence 4689999999999999888888888864 3568999999999998 89999976543321 0 112
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhh
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAE 127 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~ 127 (230)
...+|+.++++++.+++||++||+|++++++++++++++||+||+||+++.|||+++++..+.
T Consensus 270 ~~~~~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g~ 332 (343)
T cd04734 270 PGPFLPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREGR 332 (343)
T ss_pred cchhHHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcCC
Confidence 234789999999999999999999999999999999889999999999999999999887643
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-19 Score=160.48 Aligned_cols=123 Identities=16% Similarity=0.214 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHhhcCC-----ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCC
Q 026945 1 MDNLPLVKSLVEKLALNLN-----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKK 64 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~-----~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~ 64 (230)
+++|+.+.++++++++.++ +||+||++..++.++..++++.++++|+++|++|+|+.... .+++
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 3689999999999999886 99999999877767889999999999999999999875321 2345
Q ss_pred Ccc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 65 FRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 65 ~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
|++ .|+.++++++.+ ++||+++|||.|++|+.+++. +|||+||+||+++.+ ||+|.++.
T Consensus 259 G~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i~ 324 (327)
T cd04738 259 GAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRIK 324 (327)
T ss_pred ChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHHH
Confidence 543 378999999998 799999999999999999997 999999999999875 99999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-19 Score=161.52 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=107.9
Q ss_pred CChHHHHHHHHHHhhcCC-----ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-----------cCCCCC
Q 026945 2 DNLPLVKSLVEKLALNLN-----VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKF 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-----~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-----------~~~~~~ 65 (230)
++|+.+.++++++++.++ +||+||++...+.++..++++.++++|+|+|++|+++... ..+++|
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG 268 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSG 268 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCccc
Confidence 588999999999999887 9999999987777789999999999999999999987432 123444
Q ss_pred cc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 66 RA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 66 ~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ .|++++++++.+ ++||+++|||.|++|+.+++. +|||+||+||+++. +||+|+++..
T Consensus 269 ~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~i~~ 334 (344)
T PRK05286 269 RPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKEIVR 334 (344)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHHHHH
Confidence 43 788999999998 799999999999999999998 89999999999987 5999998753
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-19 Score=159.40 Aligned_cols=124 Identities=15% Similarity=0.186 Sum_probs=107.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-CCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-~~~~~~~~~~i~~i 75 (230)
+..++.||+++|+++++.||++|++. |.+.+++.++++.++++|+|+|+||+++..... ...+..+|++++++
T Consensus 191 R~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~i 270 (337)
T PRK13523 191 RYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHI 270 (337)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHH
Confidence 46789999999999999999999997 346788999999999999999999999743211 11123478999999
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++.+++||+++|+|.|++++++++++++||+||+||+++.||++++++...
T Consensus 271 k~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~ 321 (337)
T PRK13523 271 REHANIATGAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKE 321 (337)
T ss_pred HhhcCCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHH
Confidence 999999999999999999999999988899999999999999999988653
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=153.93 Aligned_cols=121 Identities=22% Similarity=0.321 Sum_probs=102.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCCcc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKFRA 67 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~~~ 67 (230)
.+|+++.++++++++.+++||++|++. +.++..++++.++++|+|.|++++++... ..+++|++
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 214 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPA 214 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcc
Confidence 689999999999999999999999985 44578899999999999999987543210 01234443
Q ss_pred ----cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 68 ----DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 68 ----~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
.++.++++++.+++|||++|||.|++|+.++++ .|||+||+||+++.|||+|+++..
T Consensus 215 ~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~-~GAd~V~igra~l~~p~~~~~i~~ 275 (296)
T cd04740 215 IKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEFLM-AGASAVQVGTANFVDPEAFKEIIE 275 (296)
T ss_pred cchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEchhhhcChHHHHHHHH
Confidence 468999999999999999999999999999997 899999999999999999998754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-19 Score=154.34 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc--CCCEEEE----------ec-CCC-----CCc-CC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAV----------HG-RTR-----DEK-DG 62 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~--G~~~i~v----------h~-rt~-----~~~-~~ 62 (230)
.||+.+.+|++++++.+++||+||+|.+++..+..++++.+.++ |++.|++ |. |+. .+. .+
T Consensus 140 ~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 140 YDFDATLEYLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 48999999999999999999999999988877888999999998 9999995 43 222 111 12
Q ss_pred CCCcc-c---HHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 63 KKFRA-D---WNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 63 ~~~~~-~---~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++|++ + +..++++++.++ +|||+||||.|.+|+.+++. +|||+||+|++++. +||+|+++..
T Consensus 220 ~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 288 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARIEK 288 (294)
T ss_pred cCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHHHH
Confidence 33332 3 456677888884 99999999999999999997 99999999999995 9999998753
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=153.87 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------cCCCCC--
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------KDGKKF-- 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------~~~~~~-- 65 (230)
++|+++.++++++++.+++||+||++. +.++..++++.++++|+|.|++++++... ..++++
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~ 217 (301)
T PRK07259 140 TDPELAYEVVKAVKEVVKVPVIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPA 217 (301)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcC
Confidence 579999999999999999999999995 44578899999999999999987643211 012233
Q ss_pred --cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 66 --RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 66 --~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+..+++++++++.+++||+++|||.|++|+.+++. .|||+||+||+++.+|++|.++..
T Consensus 218 ~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~i~~ 278 (301)
T PRK07259 218 IKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPKIIE 278 (301)
T ss_pred cccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHHHHH
Confidence 23689999999999999999999999999999997 899999999999999999998764
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=156.26 Aligned_cols=124 Identities=24% Similarity=0.320 Sum_probs=105.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC--------------------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCc
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV--------------------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~--------------------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~ 60 (230)
+++++.+|+++|++++ ++||++|++. |.+.++++++++.++++|+|+|+||+++..+.
T Consensus 200 R~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~ 279 (382)
T cd02931 200 RLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAW 279 (382)
T ss_pred HhHHHHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCccc
Confidence 5789999999999998 6899999995 23557889999999999999999999875432
Q ss_pred C-----CCCC-cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 61 D-----GKKF-RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 61 ~-----~~~~-~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
. .+.+ ...++.++.+++.+++||+++|+|++++++.+++++++||+||+||+++.|||+++++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 351 (382)
T cd02931 280 YWNHPPMYQKKGMYLPYCKALKEVVDVPVIMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRRG 351 (382)
T ss_pred ccccCCccCCcchhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHcC
Confidence 1 1111 2346788999999999999999999999999999988899999999999999999998754
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=154.50 Aligned_cols=123 Identities=17% Similarity=0.267 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEEC------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC---------CC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---------KF 65 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~---------~~ 65 (230)
+++++.+++++|++++ ++||++|++ .|++.+++.++++.|+++|+++|+||+++..+.... ..
T Consensus 198 R~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~ 277 (338)
T cd04733 198 RARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIARE 277 (338)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccc
Confidence 5789999999999998 589999997 467888999999999999999999999986543210 01
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
...++..+++++.+++||+++|+|.+++++.+++++.+||+|++||+++.|||+++++.+
T Consensus 278 ~~~~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~ 337 (338)
T cd04733 278 AYFLEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLLA 337 (338)
T ss_pred hhhHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence 224688889999999999999999999999999998889999999999999999998753
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-18 Score=159.37 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=104.1
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---------------------ecCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---------------------HGRTRDE 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---------------------h~rt~~~ 59 (230)
+++|+.+.+|++++++.+++||+||+|. +..+..++++.++++|++.|++ |+|+..
T Consensus 150 ~~~~~~~~~i~~~v~~~~~~Pv~vKl~p--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~- 226 (420)
T PRK08318 150 GQVPELVEMYTRWVKRGSRLPVIVKLTP--NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSH- 226 (420)
T ss_pred cCCHHHHHHHHHHHHhccCCcEEEEcCC--CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCc-
Confidence 3689999999999999999999999995 4456789999999999999994 444433
Q ss_pred cCCCCCcc----cHHHHHHHHhhC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 60 KDGKKFRA----DWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 60 ~~~~~~~~----~~~~i~~i~~~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
.+++|++ .|++|+++++.+ ++|||+||||.|.+|+.+++. +|||+||+||+++. .|.++.++..
T Consensus 227 -gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I~~ 298 (420)
T PRK08318 227 -GGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDMIS 298 (420)
T ss_pred -ccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHHHH
Confidence 3567776 599999999987 799999999999999999997 99999999999999 7998887754
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=148.03 Aligned_cols=122 Identities=25% Similarity=0.342 Sum_probs=106.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCC------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCccc
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~ 68 (230)
+++++.++++++++.+ ++||++|++.. ++.+++.++++.+++.|+++|+||+++..+... .....+
T Consensus 190 r~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 269 (327)
T cd02803 190 RARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYF 269 (327)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchh
Confidence 3678899999999988 78999999964 456789999999999999999999998654321 112457
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.++.+++.+++||+++|+|+|++++.++++..|||+|++||+++.||+++.++.
T Consensus 270 ~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~~ 325 (327)
T cd02803 270 LELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKAR 325 (327)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHHh
Confidence 88999999999999999999999999999999779999999999999999998765
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=142.06 Aligned_cols=118 Identities=20% Similarity=0.281 Sum_probs=99.5
Q ss_pred CCChHHHHHHHHHHhhcC--CceE---EEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 1 MDNLPLVKSLVEKLALNL--NVPV---SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~--~~pv---svKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
++||+++.++++.+.+++ .+|+ .+|++ ||+ ..++.++++.+++.|++.|++|+|++.+. +.| +||+.++
T Consensus 108 l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~--~~G-~d~~~i~ 183 (241)
T PRK14024 108 LENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGT--LTG-PNLELLR 183 (241)
T ss_pred hCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEEEEEeecCCCC--ccC-CCHHHHH
Confidence 479999999999998765 3455 55554 674 23678999999999999999999999975 445 5999999
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHH--hhCCcEEEEehhhhhCCccccc
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLE--ETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~--~~gadgVmigR~~l~nP~lf~~ 122 (230)
++++.+++||++||||+|++|+.++++ .+||||||+||+++.++.-+.+
T Consensus 184 ~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~ 234 (241)
T PRK14024 184 EVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPE 234 (241)
T ss_pred HHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHH
Confidence 999999999999999999999999864 4799999999999999765544
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=148.05 Aligned_cols=123 Identities=20% Similarity=0.240 Sum_probs=104.0
Q ss_pred CChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCC--CCCcCCCCCcccHHH
Q 026945 2 DNLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRT--RDEKDGKKFRADWNA 71 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt--~~~~~~~~~~~~~~~ 71 (230)
.+++++.+++++|++.+ ++||++|++. +++.+++.++++.+++.|+++|+||... ..+........+++.
T Consensus 202 nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~ 281 (336)
T cd02932 202 NRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPF 281 (336)
T ss_pred HHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHH
Confidence 36889999999999998 7999999994 5677889999999999999999999543 322111112335688
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.+++++.+++||+++|+|.|++++.++++++.||+||+||+++.||++..++.
T Consensus 282 ~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k~~ 334 (336)
T cd02932 282 AERIRQEAGIPVIAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLHAA 334 (336)
T ss_pred HHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHHHh
Confidence 89999999999999999999999999999777999999999999999988654
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=146.50 Aligned_cols=119 Identities=17% Similarity=0.251 Sum_probs=103.7
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCC---------CChHHHHHHHHHHHHcCCCEEEE-ecCCCCCcCCCCCcccHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g---------~~~~~~~~~a~~l~~~G~~~i~v-h~rt~~~~~~~~~~~~~~~ 71 (230)
+..++.||+++|+++++. ||++|++.. .+.+++.++++.|++.|+|+|+| |+++..+. +..+++.
T Consensus 201 R~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----~~~~~~~ 276 (338)
T cd02933 201 RARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----EDQPPDF 276 (338)
T ss_pred hhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----cccchHH
Confidence 467899999999998854 899999863 24578899999999999999999 56554332 4678999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++|++.+++||+++|+|+ ++++++++++.+||+|++||+++.|||+++++..+
T Consensus 277 ~~~ik~~~~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~g 330 (338)
T cd02933 277 LDFLRKAFKGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERLKNG 330 (338)
T ss_pred HHHHHHHcCCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhcC
Confidence 9999999999999999997 99999999988899999999999999999998754
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.2e-17 Score=147.75 Aligned_cols=123 Identities=20% Similarity=0.329 Sum_probs=100.2
Q ss_pred ChHHHHHHHHHHhhcCC----ceEEEEECCCC--------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKLALNLN----VPVSCKIRVFP--------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~----~pvsvKiR~g~--------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+..++.||+++|+++++ .++.|++|+++ +.++++++++.++++|+|+|+||+++........+..+++
T Consensus 193 R~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~ 272 (353)
T cd04735 193 RMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQT 272 (353)
T ss_pred HHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHH
Confidence 46789999999999886 55666666643 3568999999999999999999986543321122233577
Q ss_pred HHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.++.+++.+ ++||++||+|+|++++.++++. |||+||+||+++.||+++.++..+
T Consensus 273 ~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~~~G 329 (353)
T cd04735 273 IMELVKERIAGRLPLIAVGSINTPDDALEALET-GADLVAIGRGLLVDPDWVEKIKEG 329 (353)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHHHcC
Confidence 778888876 7999999999999999999986 999999999999999999988754
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=143.87 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=99.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC--------CChHHHHHHHHHHHHcCCCEEEEecC-----CCCCcCCCCCcc-c
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF--------PNLQDTIKYAKMLEDAGCSLLAVHGR-----TRDEKDGKKFRA-D 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g--------~~~~~~~~~a~~l~~~G~~~i~vh~r-----t~~~~~~~~~~~-~ 68 (230)
+++++.+++++++++++.++.+++|++ ++.++++++++.|+++|+|+|+|+.. +... ..+.+.. .
T Consensus 186 R~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~-~~~~~~~~~ 264 (353)
T cd02930 186 RMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTI-ATSVPRGAF 264 (353)
T ss_pred HhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccc-cccCCchhh
Confidence 478999999999999865555555553 35678999999999999999999643 2211 1112222 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+..+++++.+++||+++|++++++++++++++++||+||+||+++.|||+++++..+
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~~~g 322 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKAAAG 322 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence 4567899999999999999999999999999988899999999999999999988754
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-16 Score=139.02 Aligned_cols=118 Identities=21% Similarity=0.238 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCCCcc----c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFRA----D 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~~~~----~ 68 (230)
++.+.++++++++.+++||+||++.+. .+..++++.++++|++.|++|+|+.... .++++++ .
T Consensus 150 ~~~~~eil~~v~~~~~iPV~vKl~p~~--~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~a 227 (334)
T PRK07565 150 EQRYLDILRAVKSAVSIPVAVKLSPYF--SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLP 227 (334)
T ss_pred HHHHHHHHHHHHhccCCcEEEEeCCCc--hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHH
Confidence 356889999999999999999998644 4678999999999999999999864321 1123332 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
++.++++++.+++|||++|||+|.+|+.+++. +|||+||+||+++.+ |.++.++.
T Consensus 228 l~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~i~ 283 (334)
T PRK07565 228 LRWIAILSGRVGADLAATTGVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGTIL 283 (334)
T ss_pred HHHHHHHHhhcCCCEEEECCCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHHHH
Confidence 67788898889999999999999999999997 999999999999995 98777654
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=138.27 Aligned_cols=118 Identities=22% Similarity=0.294 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCCCcc----c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFRA----D 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~~~~----~ 68 (230)
++.+.++++++++.+++||+||++.. ..+..++++.++++|++.|++|+|+.... .+++|++ .
T Consensus 148 ~~~~~eiv~~v~~~~~iPv~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a 225 (325)
T cd04739 148 EQRYLDILRAVKSAVTIPVAVKLSPF--FSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP 225 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHH
Confidence 36788999999999999999999964 34688999999999999999999863211 1123332 3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
+++++++++.+++||+++|||.|++|+.+++. +|||+||+|++++.+ |.++.++.
T Consensus 226 l~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i~ 281 (325)
T cd04739 226 LRWIAILSGRVKASLAASGGVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGTLL 281 (325)
T ss_pred HHHHHHHHcccCCCEEEECCCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHHHH
Confidence 67888999888999999999999999999997 999999999999995 99888765
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=151.56 Aligned_cols=122 Identities=15% Similarity=0.179 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcC-CCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKD-GKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~-~~~~~~~~~~i 72 (230)
...++.||+++|++++ ++||++|++. |++.++++++++.++++|+|+|+||+ ++..+.. .+......++.
T Consensus 600 R~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~ 679 (765)
T PRK08255 600 RLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFA 679 (765)
T ss_pred HhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHH
Confidence 4678999999999987 5899999997 34567899999999999999999994 4433211 11112345677
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC-ccccchh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP-ALFAGFR 124 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP-~lf~~~~ 124 (230)
+++|+.+++||++||+|++++++++++++++||+||+||+++.|| |.++...
T Consensus 680 ~~ik~~~~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~~~ 732 (765)
T PRK08255 680 DRIRNEAGIATIAVGAISEADHVNSIIAAGRADLCALARPHLADPAWTLHEAA 732 (765)
T ss_pred HHHHHHcCCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHHHH
Confidence 899999999999999999999999999989999999999999999 5455443
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.2e-16 Score=138.78 Aligned_cols=122 Identities=18% Similarity=0.231 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC----------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV----------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~----------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+..++.||+++|++++ ++||.+|++. |.+.+++.++++.++++|+|+|+++.+.... ..+. +.+++
T Consensus 193 R~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~-~~~~-~~~~~ 270 (361)
T cd04747 193 RSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWE-PEFE-GSELN 270 (361)
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccC-CCcC-ccchh
Confidence 4678999999999988 5899999994 2345678899999999999999887753211 1222 34678
Q ss_pred HHHHHHhhCCccEEEcCCC------------------CCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNV------------------RHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI------------------~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+.+++.+++||+++|+| .|++++++++++++||+||+||+++.|||++.++.++
T Consensus 271 ~~~~~k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g 344 (361)
T cd04747 271 LAGWTKKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREG 344 (361)
T ss_pred HHHHHHHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcC
Confidence 8899999999999999998 6999999999988899999999999999999998764
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=137.61 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=100.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC----------CChHHHHHHHHHHHHcCCCEEEEecCCCCCc----CCCCCccc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF----------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g----------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~----~~~~~~~~ 68 (230)
+..++.||+++|+++++.++.|++|++ ++.++++++++.+++. +|++.++....... ..+.+...
T Consensus 199 R~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~ 277 (370)
T cd02929 199 RARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQ 277 (370)
T ss_pred hhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCcccc
Confidence 578999999999999876666666653 2356788999999876 89999987543211 11223456
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
|+.++++++.+++||+++|+|++++++++++++++||+||+||+++.|||++.+++.+
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~g 335 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKIREG 335 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHHHcC
Confidence 8889999999999999999999999999999988899999999999999999998764
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-14 Score=123.82 Aligned_cols=112 Identities=25% Similarity=0.269 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEEC----CCCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIR----VFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR----~g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.+|+.+.++++.+.+++.+++.+|.+ .+|. ..+..++++.+++.|++.|.+|++++.+. +.| +||+.+++
T Consensus 108 ~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~--~~G-~d~~~i~~ 184 (233)
T PRK00748 108 KNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGT--LSG-PNVEATRE 184 (233)
T ss_pred hCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCC--cCC-CCHHHHHH
Confidence 57889999999886654445554421 1342 23578999999999999999999998864 334 79999999
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++.+++||+++|||+|++|+.++++.+||||||+||+++..
T Consensus 185 l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 185 LAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 999999999999999999999999986669999999999876
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=123.57 Aligned_cols=115 Identities=25% Similarity=0.363 Sum_probs=94.6
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEEECC----------CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCKIRV----------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvKiR~----------g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~ 67 (230)
+.+|+.+.++++.+.+ .+-+++.+|.|. +++ ..++.++++.+++.|+++|.+|+++.... ..++
T Consensus 104 ~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~---~~g~ 180 (243)
T cd04731 104 VENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT---KKGY 180 (243)
T ss_pred hhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC---CCCC
Confidence 4689999999998853 455666666543 222 34688999999999999999999987532 2356
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+.++++++.+++||+++|||+|++|+.++++.+|||+||+||+++..-.
T Consensus 181 ~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~ 231 (243)
T cd04731 181 DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEY 231 (243)
T ss_pred CHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCC
Confidence 999999999999999999999999999999999889999999998876543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-14 Score=130.75 Aligned_cols=106 Identities=22% Similarity=0.293 Sum_probs=93.7
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
.+|+++.+++++++++. |+||+|+++ .++.++++.++++|++.|++|+||++|.+. .+..+|..+.++++.+++
T Consensus 116 ~~p~l~~~ii~~vr~a~---VtvkiRl~~--~~~~e~a~~l~eAGad~I~ihgrt~~q~~~-sg~~~p~~l~~~i~~~~I 189 (369)
T TIGR01304 116 LKPELLGERIAEVRDSG---VITAVRVSP--QNAREIAPIVVKAGADLLVIQGTLVSAEHV-STSGEPLNLKEFIGELDV 189 (369)
T ss_pred cChHHHHHHHHHHHhcc---eEEEEecCC--cCHHHHHHHHHHCCCCEEEEeccchhhhcc-CCCCCHHHHHHHHHHCCC
Confidence 37999999999999974 999999954 478899999999999999999999988642 345689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++ |+|.|.+++.++++ +|||+||+||+.-.
T Consensus 190 PVI~-G~V~t~e~A~~~~~-aGaDgV~~G~gg~~ 221 (369)
T TIGR01304 190 PVIA-GGVNDYTTALHLMR-TGAAGVIVGPGGAN 221 (369)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCCCc
Confidence 9998 99999999999997 99999999997754
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=123.78 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=94.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCC-----------C---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF-----------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g-----------~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~ 66 (230)
+.+|+++.++++.+.+. .+++++++|.+ | ......++++.+++.|++.+.+|++++.+. +.|
T Consensus 107 ~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~--~~G- 182 (258)
T PRK01033 107 LEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGT--MKG- 182 (258)
T ss_pred hcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCC--cCC-
Confidence 36889999999988533 36778877755 1 123578999999999999999999999865 334
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||+.++++++.+++||+++|||.|.+|+.++++.+|||||++|+++...
T Consensus 183 ~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~ 232 (258)
T PRK01033 183 YDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK 232 (258)
T ss_pred CCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence 69999999999999999999999999999999977999999999977765
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-14 Score=118.76 Aligned_cols=109 Identities=24% Similarity=0.354 Sum_probs=90.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCC------------C---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVF------------P---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g------------~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~ 65 (230)
+.+|+++.++++...+. .+++++++|.+ | ...++.++++.+++.|+++|++|++++.+. . .
T Consensus 107 l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~--~-~ 182 (232)
T TIGR03572 107 LENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT--M-K 182 (232)
T ss_pred hcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC--c-C
Confidence 46899999999887443 26788887763 1 123578999999999999999999888653 2 3
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+++|+.++++++.+++||+++|||+|++|+.+++..+|||+||+|+++
T Consensus 183 g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 183 GYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred CCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 469999999999999999999999999999997878999999999975
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=119.61 Aligned_cols=116 Identities=24% Similarity=0.314 Sum_probs=92.4
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEEEC----CCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCKIR----VFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvKiR----~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+.||+++.++.+.+.+ .+-+++.+|.+ -+| ...+..++++.+++.|++.|++|++++.+. +. +++|+.+
T Consensus 106 l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~--~~-g~~~~~i 182 (234)
T cd04732 106 VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT--LS-GPNFELY 182 (234)
T ss_pred HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc--cC-CCCHHHH
Confidence 3578999999888755 32233333321 122 234678999999999999999999988754 23 4899999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
+++++.+++||+++|||++.+|+.++++ .|||+||+||+++.++--+
T Consensus 183 ~~i~~~~~ipvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~~~ 229 (234)
T cd04732 183 KELAAATGIPVIASGGVSSLDDIKALKE-LGVAGVIVGKALYEGKITL 229 (234)
T ss_pred HHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEeHHHHcCCCCH
Confidence 9999999999999999999999999997 7999999999999997533
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-14 Score=122.91 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC---------------CcCCCCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------EKDGKKFR 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~---------------~~~~~~~~ 66 (230)
++|+.+.++++++++.+.+||.||+.. +..+..++|+.+.++|+|.|++..-+.. ...+.+|+
T Consensus 144 ~~~e~l~~l~~~vk~~~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~ 221 (310)
T COG0167 144 QDPELLEKLLEAVKAATKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGP 221 (310)
T ss_pred cCHHHHHHHHHHHHhcccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcc
Confidence 389999999999999999999999985 6788999999999999999998763321 11234554
Q ss_pred c----cHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchhh
Q 026945 67 A----DWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 125 (230)
Q Consensus 67 ~----~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~~ 125 (230)
+ ....++++.+.++ +|||+.|||.|++|+.+.+. .||+.|.++.+++.+ |++|.++..
T Consensus 222 ~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~-aGA~~vQv~Tal~~~Gp~i~~~I~~ 286 (310)
T COG0167 222 PLKPIALRVVAELYKRLGGDIPIIGVGGIETGEDALEFIL-AGASAVQVGTALIYKGPGIVKEIIK 286 (310)
T ss_pred cchHHHHHHHHHHHHhcCCCCcEEEecCcCcHHHHHHHHH-cCCchheeeeeeeeeCchHHHHHHH
Confidence 4 4677888989876 99999999999999999997 899999999999998 999998754
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=122.06 Aligned_cols=98 Identities=27% Similarity=0.261 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
.++++.+++.+++||++|... +.+.++.++++|++.|++|++...+. +.+++.|+.+.++++.+ ++|||+
T Consensus 161 ~~~i~~l~~~~~~pvivK~v~------s~~~a~~a~~~G~d~I~v~~~gG~~~--~~g~~~~~~l~~i~~~~~~~ipvia 232 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKGIL------TPEDALRAVDAGADGIVVSNHGGRQL--DGAPATIDALPEIVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHHhcCCCEEEeecC------CHHHHHHHHHCCCCEEEEcCCCCCCC--CCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 367888888889999999753 24668999999999999988765442 34678899999999887 499999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|||++..|+.+++. .|||+||+||.++
T Consensus 233 ~GGI~~~~d~~kal~-lGAd~V~ig~~~l 260 (299)
T cd02809 233 DGGIRRGTDVLKALA-LGADAVLIGRPFL 260 (299)
T ss_pred eCCCCCHHHHHHHHH-cCCCEEEEcHHHH
Confidence 999999999999997 9999999999433
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-13 Score=115.90 Aligned_cols=110 Identities=25% Similarity=0.312 Sum_probs=90.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+|+.+.++++.+... .+.+++++|. +|. ..+..++++.+++.|++.+++|++++.+.. . +.||+.+
T Consensus 106 ~d~~~~~~~~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~--~-g~~~~~i 181 (230)
T TIGR00007 106 ENPDLVKELLKEYGPE-RIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTL--S-GPNFELT 181 (230)
T ss_pred hCHHHHHHHHHHhCCC-cEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCc--C-CCCHHHH
Confidence 5788888998888522 2455565553 342 135688999999999999999999987642 2 5799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++++.+++||+++|||+|.+|+.++++ +||||||+|++++.+
T Consensus 182 ~~i~~~~~ipvia~GGi~~~~di~~~~~-~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 182 KELVKAVNVPVIASGGVSSIDDLIALKK-LGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEeHHHHcC
Confidence 9999999999999999999999999886 999999999999987
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-14 Score=124.36 Aligned_cols=122 Identities=18% Similarity=0.232 Sum_probs=101.7
Q ss_pred CChHHHHHHHHHHhhcCC-------ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-----------CcCCC
Q 026945 2 DNLPLVKSLVEKLALNLN-------VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----------EKDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-------~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-----------~~~~~ 63 (230)
.+++.+.++++++++.++ +||.+|+....+.++..++++.++++|++.|++..++.. ...++
T Consensus 186 ~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGl 265 (335)
T TIGR01036 186 QYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGL 265 (335)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcc
Confidence 578999999999998776 999999998766668899999999999999999876532 11234
Q ss_pred CCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchh
Q 026945 64 KFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFR 124 (230)
Q Consensus 64 ~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~ 124 (230)
+|++ -..+++++++.+ ++|||++|||.|++|+.+++. .|||.|++|++++. +|+++.++.
T Consensus 266 SG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~i~ 332 (335)
T TIGR01036 266 SGKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKEIV 332 (335)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHHHH
Confidence 4443 346777787777 599999999999999999997 89999999999988 599998765
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.7e-13 Score=115.37 Aligned_cols=113 Identities=20% Similarity=0.311 Sum_probs=92.6
Q ss_pred CCChHHHHHHHHHHh-h----cCC-------ceEEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc
Q 026945 1 MDNLPLVKSLVEKLA-L----NLN-------VPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR 66 (230)
Q Consensus 1 m~~p~~~~eiv~~v~-~----~~~-------~pvsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~ 66 (230)
+++|+++.++.+.+. + .++ .|++||+|.+++. ....++++.+++.|++.|.+|+..+... ...
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~---~~g 183 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT---KNG 183 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC---CCC
Confidence 368999999999873 1 223 4678999987642 3578999999999999999988654321 124
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.||+.++++++.+++||+++|||.|.+|+.++++.+|||+||+|+++...
T Consensus 184 ~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 184 YDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred cCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 59999999999999999999999999999999987899999999988765
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.9e-13 Score=113.71 Aligned_cols=119 Identities=19% Similarity=0.289 Sum_probs=93.8
Q ss_pred CCChHHHHHHHHHHhh-cCCceEEEE---EC-CCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 1 MDNLPLVKSLVEKLAL-NLNVPVSCK---IR-VFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~-~~~~pvsvK---iR-~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++|+++.++.+.+.. .+-+.+++| +. -||+. .+..++++.+++.|++.|++|++++... ..+.+|+.+
T Consensus 109 ~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~---~~g~~~~~i 185 (241)
T PRK13585 109 VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGL---LEGVNTEPV 185 (241)
T ss_pred hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCC---cCCCCHHHH
Confidence 3588888888888743 322233433 11 14432 2678999999999999999999987642 235799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+++++.+++||+++|||+|++|+.+++ .+||++|++|++++.+|..+.+.
T Consensus 186 ~~i~~~~~iPvia~GGI~~~~di~~~~-~~Ga~gv~vgsa~~~~~~~~~~~ 235 (241)
T PRK13585 186 KELVDSVDIPVIASGGVTTLDDLRALK-EAGAAGVVVGSALYKGKFTLEEA 235 (241)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHH-HcCCCEEEEEHHHhcCCcCHHHH
Confidence 999999999999999999999999965 59999999999999999977754
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8e-13 Score=119.32 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEECC-------CCChHHHHHHHHHHHHcC-CCEEEEecCCCCC--cCCCC-CcccHH
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIRV-------FPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDE--KDGKK-FRADWN 70 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR~-------g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~--~~~~~-~~~~~~ 70 (230)
-.++.||+++++++++ .||.+++.. |++.+++.++++.|++.| +++|++++..... ..... +.....
T Consensus 199 ~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~ 278 (363)
T COG1902 199 ARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVE 278 (363)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHH
Confidence 4688999999999984 689999886 235678999999999999 7999998765431 11111 233456
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
....++..+.+||+++|+|++++.+++++++.+||.|.+||+++.||++..+++.+
T Consensus 279 ~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g 334 (363)
T COG1902 279 FAARIKKAVRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEG 334 (363)
T ss_pred HHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcC
Confidence 67778888899999999999999999999966699999999999999999988754
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=120.86 Aligned_cols=102 Identities=18% Similarity=0.254 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc-cHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~~i 81 (230)
+|+++.+++++++++ + |++|+|+. ..+..++++.+.++|+++|++|+||+.+.+. +.. +|..+.++++..++
T Consensus 116 ~p~l~~~iv~~~~~~-~--V~v~vr~~--~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~--~~~~~~~~i~~~ik~~~i 188 (368)
T PRK08649 116 KPELITERIAEIRDA-G--VIVAVSLS--PQRAQELAPTVVEAGVDLFVIQGTVVSAEHV--SKEGEPLNLKEFIYELDV 188 (368)
T ss_pred CHHHHHHHHHHHHhC-e--EEEEEecC--CcCHHHHHHHHHHCCCCEEEEeccchhhhcc--CCcCCHHHHHHHHHHCCC
Confidence 689999999999986 3 66677763 3567899999999999999999999987643 344 78888888888899
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
|||+ |+|.|.+++.++++ +|||+||+|+|-
T Consensus 189 pVIa-G~V~t~e~A~~l~~-aGAD~V~VG~G~ 218 (368)
T PRK08649 189 PVIV-GGCVTYTTALHLMR-TGAAGVLVGIGP 218 (368)
T ss_pred CEEE-eCCCCHHHHHHHHH-cCCCEEEECCCC
Confidence 9999 99999999999997 999999999874
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.3e-13 Score=114.74 Aligned_cols=112 Identities=22% Similarity=0.293 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHh-hcC--Cc-----eE------EEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC
Q 026945 2 DNLPLVKSLVEKLA-LNL--NV-----PV------SCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~-~~~--~~-----pv------svKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~ 65 (230)
.+|+++.++.+... +++ .+ ++ -||+|.+++ ..+..++++.+++.|++.|.+|++++.. +.+
T Consensus 108 ~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g---~~~ 184 (254)
T TIGR00735 108 KNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG---TKS 184 (254)
T ss_pred hChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc---CCC
Confidence 58999999888774 332 12 11 377777553 3468899999999999999999988753 445
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++|+.++++++.+++||+++|||+|++|+.++++.+||||||+|+.++..
T Consensus 185 g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 185 GYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred CCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 789999999999999999999999999999999987779999999987654
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=116.82 Aligned_cols=123 Identities=20% Similarity=0.216 Sum_probs=99.9
Q ss_pred CCChHHHHHHHHHHhhc---------CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC------------C
Q 026945 1 MDNLPLVKSLVEKLALN---------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------E 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~---------~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~------------~ 59 (230)
+++++.+.++++++++. ..+||.||+....+.++..++++.+.+.|++.|++...+.. .
T Consensus 235 lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~ 314 (409)
T PLN02826 235 LQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADE 314 (409)
T ss_pred ccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhccccccc
Confidence 35788899999998643 46899999986556567889999999999999999875431 1
Q ss_pred cCCCCCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 60 KDGKKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 60 ~~~~~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
..+.+|++ -.+.++++++.+ ++|||++|||.|.+|+.+++. .||+.|+++++++.+ |+++.++.
T Consensus 315 ~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~I~ 385 (409)
T PLN02826 315 AGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPRIK 385 (409)
T ss_pred CCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHHHH
Confidence 12345544 367788888887 699999999999999999997 899999999999885 98887765
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=115.04 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECC---------CCChHH-HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRV---------FPNLQD-TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~---------g~~~~~-~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
-.++.||+++|+++++ -+|.+|+.. |.+.++ ++++++.|++.|+|+|+|+....... .+....+.
T Consensus 209 ~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~----~~~~~~~~ 284 (362)
T PRK10605 209 ARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG----EPYSDAFR 284 (362)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC----ccccHHHH
Confidence 4688999999999884 257888754 234566 79999999999999999987432211 12344667
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++|++.+++||+++|++ |++.+++++++..||.|++||+++.||++..++.++
T Consensus 285 ~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 285 EKVRARFHGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred HHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 88999999999999996 899999999977799999999999999999988754
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=112.00 Aligned_cols=89 Identities=21% Similarity=0.355 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+||++++.+.. .+.+|+.++++++.+++||+++|||+|.+|+++++. +||++|++|++
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i~dl~~~~~~---~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~-~Ga~~Viigt~ 105 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVFLDITASSEG---RDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLR-AGADKVSINSA 105 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccc---CcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 46889999999999999999999986432 268999999999999999999999999999999998 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||++|.++..
T Consensus 106 ~l~~p~~~~ei~~ 118 (253)
T PRK02083 106 AVANPELISEAAD 118 (253)
T ss_pred HhhCcHHHHHHHH
Confidence 9999999998764
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=110.17 Aligned_cols=89 Identities=22% Similarity=0.378 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|++|.+++.. +.++.+++.++++++.+++||+++|||+|.+|+.++++ .|||+|++|++
T Consensus 27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~---~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~-~G~~~v~ig~~ 102 (243)
T cd04731 27 GDPVELAKRYNEQGADELVFLDITASS---EGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLR-AGADKVSINSA 102 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEEcCCccc---ccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCceEEECch
Confidence 378899999999999999999998753 33477999999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 103 ~~~~p~~~~~i~~ 115 (243)
T cd04731 103 AVENPELIREIAK 115 (243)
T ss_pred hhhChHHHHHHHH
Confidence 9999999988754
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-12 Score=114.34 Aligned_cols=121 Identities=17% Similarity=0.249 Sum_probs=95.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-------C------------cCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------E------------KDG 62 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-------~------------~~~ 62 (230)
++|+.+.++++.+++.+++||.||+. ++..+..++++.+.++|++.|++..++.. . ..+
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vKLs--Pn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GG 242 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAKMT--PNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGG 242 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEEeC--CChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCC
Confidence 58999999999999989999999998 45566889999999999999999775432 0 011
Q ss_pred CCCcc-cH---HHHHHHHhhC------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchhh
Q 026945 63 KKFRA-DW---NAIKAVKNAL------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 125 (230)
Q Consensus 63 ~~~~~-~~---~~i~~i~~~~------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~~ 125 (230)
++|++ .| ..++++++.+ ++||+++|||.|.+|+.+++. .||+.|+++.+++.+ |.++.++..
T Consensus 243 lSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~-aGAs~VQv~Ta~~~~Gp~vi~~i~~ 315 (385)
T PLN02495 243 YSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFIL-LGADTVQVCTGVMMHGYPLVKNLCA 315 (385)
T ss_pred ccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHH-hCCCceeEeeeeeecCcHHHHHHHH
Confidence 23332 22 2234455544 499999999999999999997 899999999999998 999987653
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=116.98 Aligned_cols=123 Identities=26% Similarity=0.383 Sum_probs=96.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC------ChHHHHHHHHHHHHcCCCEEEEecCCC------CCc--CCCCCcc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLLAVHGRTR------DEK--DGKKFRA 67 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~------~~~~~~~~a~~l~~~G~~~i~vh~rt~------~~~--~~~~~~~ 67 (230)
-.++.||+++|++++ ++||.+|+.... +.+++.++++.+++.|++.+.++.... ... .......
T Consensus 199 ~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (341)
T PF00724_consen 199 ARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGY 278 (341)
T ss_dssp HHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTT
T ss_pred hHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccch
Confidence 368899999999987 688999998732 246778899999999999887643211 000 1111223
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+....+++.+++||+++|++.+++.+++++++..||.|++||+++.||++..++..+
T Consensus 279 ~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~~g 337 (341)
T PF00724_consen 279 NLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAREG 337 (341)
T ss_dssp THHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHHHT
T ss_pred hhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHHcC
Confidence 45778899999999999999999999999999988899999999999999999988754
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.1e-12 Score=112.75 Aligned_cols=122 Identities=14% Similarity=0.217 Sum_probs=92.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC----------CC--C---C--cCCCCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR----------TR--D---E--KDGKKF 65 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r----------t~--~---~--~~~~~~ 65 (230)
||+.+.++++++++.+++||.+|+....+..+..+.+..+.+.|++.|..-.+ +. . . ..+.+|
T Consensus 141 d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG 220 (310)
T PRK02506 141 DFETTEQILEEVFTYFTKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGG 220 (310)
T ss_pred CHHHHHHHHHHHHHhcCCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCc
Confidence 78999999999999999999999997655545555555556667776544321 11 0 0 122344
Q ss_pred cc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 66 RA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 66 ~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ -...++++++.+ ++|||++|||.|.+|+.+++. +||+.||++.+++. +|.+|.++..
T Consensus 221 ~~i~p~al~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~-aGA~~Vqv~ta~~~~gp~~~~~i~~ 286 (310)
T PRK02506 221 DYIKPTALANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHIL-CGASMVQVGTALHKEGPAVFERLTK 286 (310)
T ss_pred hhccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCCCHHhhhHHHHHhChHHHHHHHH
Confidence 43 345677777777 699999999999999999996 99999999999998 7999997653
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.3e-12 Score=112.19 Aligned_cols=110 Identities=27% Similarity=0.363 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------CCC--CCcccH---
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------DGK--KFRADW--- 69 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------~~~--~~~~~~--- 69 (230)
.+...+.++.+++.+++||.||... . ..+.+.++.++++|+|+|+||++..... ..+ ....+|
T Consensus 164 f~~~le~i~~i~~~~~vPVivK~~g-~--g~~~~~a~~L~~aGvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~ 240 (333)
T TIGR02151 164 FKGWLEKIAEICSQLSVPVIVKEVG-F--GISKEVAKLLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIP 240 (333)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecC-C--CCCHHHHHHHHHcCCCEEEECCCCCCcccchhhhcccccccchhhhcccHh
Confidence 3445688999999999999999763 2 2357899999999999999999753210 000 011344
Q ss_pred --HHHHHHHh-hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 70 --NAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 70 --~~i~~i~~-~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.++++ ..++|||++|||+++.|+.+++. .|||+|++||+++..-
T Consensus 241 t~~~l~~~~~~~~~ipVIasGGI~~~~di~kaLa-lGAd~V~igr~~L~~~ 290 (333)
T TIGR02151 241 TAASLLEVRSDAPDAPIIASGGLRTGLDVAKAIA-LGADAVGMARPFLKAA 290 (333)
T ss_pred HHHHHHHHHhcCCCCeEEEECCCCCHHHHHHHHH-hCCCeehhhHHHHHHH
Confidence 45666666 56899999999999999999998 7999999999988543
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=111.58 Aligned_cols=99 Identities=22% Similarity=0.258 Sum_probs=80.3
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~ 85 (230)
.+-++.+++.+++||.||- .. ..+.++.+.++|++.|.|++....|. +.+++.|+.+.++++.++ +||++
T Consensus 217 w~~i~~l~~~~~~PvivKG---v~---~~eda~~a~~~Gvd~I~VS~HGGrq~--~~~~a~~~~L~ei~~av~~~i~vi~ 288 (367)
T TIGR02708 217 PRDIEEIAGYSGLPVYVKG---PQ---CPEDADRALKAGASGIWVTNHGGRQL--DGGPAAFDSLQEVAEAVDKRVPIVF 288 (367)
T ss_pred HHHHHHHHHhcCCCEEEeC---CC---CHHHHHHHHHcCcCEEEECCcCccCC--CCCCcHHHHHHHHHHHhCCCCcEEe
Confidence 3567888888899999992 21 36788999999999885543323332 446788999999998874 99999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|||++..|+.++|. .|||+|||||.+|.
T Consensus 289 dGGIr~g~Dv~KaLa-lGAd~V~igR~~l~ 317 (367)
T TIGR02708 289 DSGVRRGQHVFKALA-SGADLVALGRPVIY 317 (367)
T ss_pred eCCcCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999998 99999999997665
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.2e-11 Score=106.02 Aligned_cols=170 Identities=15% Similarity=0.203 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEec---CCCCCc-CCCCCcccHHH--HHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVHG---RTRDEK-DGKKFRADWNA--IKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh~---rt~~~~-~~~~~~~~~~~--i~~ 74 (230)
+.+.+.++++.+++.++ +||.++ +- +.+-++.+.++|+|.+.|+. |...+. ....+.++|.. ++.
T Consensus 123 h~~~~~e~I~~ir~~~p~~~vi~g~V~-------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~ 195 (326)
T PRK05458 123 HSDSVINMIQHIKKHLPETFVIAGNVG-------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 195 (326)
T ss_pred chHHHHHHHHHHHhhCCCCeEEEEecC-------CHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHH
Confidence 34678899999999884 888886 43 45678899999999999873 331121 11123567764 889
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC 154 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~ 154 (230)
+++.+++|||++|||+++.|+.++|. .|||+||+|+.+++-..-..+. .. ..-..+.+|+..+
T Consensus 196 ~~~~~~ipVIAdGGI~~~~Di~KaLa-~GA~aV~vG~~~~~~~espg~~-----------~~-----~~g~~~k~y~g~~ 258 (326)
T PRK05458 196 CAKAARKPIIADGGIRTHGDIAKSIR-FGATMVMIGSLFAGHEESPGKT-----------VE-----IDGKLYKEYFGSA 258 (326)
T ss_pred HHHHcCCCEEEeCCCCCHHHHHHHHH-hCCCEEEechhhcCCccCCCce-----------ee-----ecchhHHHhhCcH
Confidence 99888999999999999999999998 6999999999887533322211 00 0012234444333
Q ss_pred hhCC-------C---hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHH
Q 026945 155 EKYP-------V---PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYN 199 (230)
Q Consensus 155 ~~~~-------~---~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~ 199 (230)
.+|. . .....|-|+..++..+ ..++|..+..+...++.|+.+
T Consensus 259 ~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l---~~gLr~~m~~~Ga~~i~el~~ 310 (326)
T PRK05458 259 SEFQKGEYKNVEGKKILVPHKGSLKDTLTEM---EQDLQSSISYAGGRDLDAIRK 310 (326)
T ss_pred hhhccccccccCCceEEecccCCHHHHHHHH---HHHHHHHHHHhCCCCHHHHhc
Confidence 2231 0 1223345666666643 357788777765447777764
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=108.17 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=92.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC----------CCC-----cCCCCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT----------RDE-----KDGKKFRA 67 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt----------~~~-----~~~~~~~~ 67 (230)
+++...++++.+++..++||.||+....+.......+..+.+.|++.|+...++ ... ..+.+|++
T Consensus 146 ~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~ 225 (295)
T PF01180_consen 146 DPELVAEIVRAVREAVDIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPA 225 (295)
T ss_dssp HHHHHHHHHHHHHHHHSSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGG
T ss_pred CHHHHHHHHHHHHhccCCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCchh
Confidence 577888999999998899999999975444555667777779999999854332 111 01134443
Q ss_pred ----cHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh-hhCCccccchhh
Q 026945 68 ----DWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 125 (230)
Q Consensus 68 ----~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~-l~nP~lf~~~~~ 125 (230)
-..+++++++.++ +|||++|||.|++|+.+++. .||+.|+++.++ +.+|+++.++..
T Consensus 226 i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e~l~-aGA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 226 IRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIEFLM-AGASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp GHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHHHHH-HTESEEEESHHHHHHGTTHHHHHHH
T ss_pred hhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHHHHH-hCCCHheechhhhhcCcHHHHHHHH
Confidence 3567888888888 99999999999999999997 899999999999 668999998764
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=108.51 Aligned_cols=103 Identities=25% Similarity=0.322 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
.+..+.++.+++.+++||.+|-- .+.+.++.+.++|+|.|.| ||+ .+. +.+++.++.+.++++.+ +
T Consensus 207 ~~~~~~l~~lr~~~~~PvivKgv------~~~~dA~~a~~~G~d~I~vsnhGG--r~l--d~~~~~~~~l~~i~~a~~~~ 276 (351)
T cd04737 207 KLSPADIEFIAKISGLPVIVKGI------QSPEDADVAINAGADGIWVSNHGG--RQL--DGGPASFDSLPEIAEAVNHR 276 (351)
T ss_pred CCCHHHHHHHHHHhCCcEEEecC------CCHHHHHHHHHcCCCEEEEeCCCC--ccC--CCCchHHHHHHHHHHHhCCC
Confidence 34557788899888999999942 1346788999999999999 664 222 33567789999999887 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||+++|||++..|+.++|. .|||+|||||+++....
T Consensus 277 i~vi~dGGIr~g~Di~kaLa-lGA~~V~iGr~~l~~la 313 (351)
T cd04737 277 VPIIFDSGVRRGEHVFKALA-SGADAVAVGRPVLYGLA 313 (351)
T ss_pred CeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 99999999999999999998 89999999998877543
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=105.56 Aligned_cols=110 Identities=23% Similarity=0.265 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------cC------CC---CCc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KD------GK---KFR 66 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------~~------~~---~~~ 66 (230)
+.+.+.+.++++++.+++||.||.... ..+.+.++.++++|+|+|+|+|+.... +. .+ .+.
T Consensus 170 ~f~~~le~i~~i~~~~~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~ 246 (352)
T PRK05437 170 DFRGWLDNIAEIVSALPVPVIVKEVGF---GISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGI 246 (352)
T ss_pred cHHHHHHHHHHHHHhhCCCEEEEeCCC---CCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccC
Confidence 344567899999999999999999732 234688999999999999999874210 10 00 011
Q ss_pred ccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+..+.+.++++. .++||+++|||+|..|+.+++. .|||+|++||+++..
T Consensus 247 pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~-~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 247 PTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALA-LGADAVGMAGPFLKA 296 (352)
T ss_pred CHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH-cCCCEEEEhHHHHHH
Confidence 223567777777 5899999999999999999998 699999999998864
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7e-11 Score=100.17 Aligned_cols=114 Identities=27% Similarity=0.345 Sum_probs=94.3
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+||+++.+++++..+.+ -|++-.|. ||.. -+..++++.+++.|+..|.+|..+++. +-.++|++.+
T Consensus 109 ~~p~~v~~~~~~~g~ri--vv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DG---tl~G~n~~l~ 183 (241)
T COG0106 109 KNPDLVKELCEEYGDRI--VVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDG---TLSGPNVDLV 183 (241)
T ss_pred cCHHHHHHHHHHcCCcE--EEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEeccccc---ccCCCCHHHH
Confidence 68999999999998554 44444444 4532 257899999999999999999998874 3446899999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhhhhCCcccc
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESLLENPALFA 121 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~l~nP~lf~ 121 (230)
.++.+.+++||+++|||.|.+|+..+.+ . |+.||.+||+++..-.-+.
T Consensus 184 ~~l~~~~~ipviaSGGv~s~~Di~~l~~-~~G~~GvIvG~ALy~g~~~l~ 232 (241)
T COG0106 184 KELAEAVDIPVIASGGVSSLDDIKALKE-LSGVEGVIVGRALYEGKFTLE 232 (241)
T ss_pred HHHHHHhCcCEEEecCcCCHHHHHHHHh-cCCCcEEEEehHHhcCCCCHH
Confidence 9999999999999999999999997665 6 8999999999998765444
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-11 Score=103.79 Aligned_cols=89 Identities=20% Similarity=0.353 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+++..++... ..+.+++.++++++.+++||+++|||+|.+|+++++. .||++|++|++
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~-~Ga~~vivgt~ 105 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASSE---GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLR-AGADKVSINTA 105 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 3688999999999999999999987642 3367999999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 106 ~~~~p~~~~~~~~ 118 (254)
T TIGR00735 106 AVKNPELIYELAD 118 (254)
T ss_pred HhhChHHHHHHHH
Confidence 9999999988753
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-11 Score=101.55 Aligned_cols=89 Identities=26% Similarity=0.427 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.++||.+++... ..+.+++.++++++.+++||+++|||+|+++++++++ +|||.|++|++
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~---~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~-~Gad~vvigs~ 104 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG---GEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLD-LGVSRVIIGTA 104 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc---CCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 4788999999999999999999876521 1367899999999999999999999999999999996 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||+++.++..
T Consensus 105 ~l~dp~~~~~i~~ 117 (234)
T cd04732 105 AVKNPELVKELLK 117 (234)
T ss_pred HHhChHHHHHHHH
Confidence 9999999988754
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=104.02 Aligned_cols=110 Identities=30% Similarity=0.424 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------cCCC------CCcccH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------KDGK------KFRADW 69 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------~~~~------~~~~~~ 69 (230)
|.+.+.+.++.+++.+++||.+|.... ..+.+.++.++++|+|.|.|+|+.... +... ....+|
T Consensus 162 df~~~~~~i~~l~~~~~vPVivK~~g~---g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~ 238 (326)
T cd02811 162 DFRGWLERIEELVKALSVPVIVKEVGF---GISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADW 238 (326)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCC---CCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccc
Confidence 344566889999999999999998642 234688999999999999999852210 0000 001223
Q ss_pred -----HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 70 -----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 70 -----~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..+.++++.+ ++|||++|||++..|+.+++. .|||+|++||++|..
T Consensus 239 g~~t~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~-lGAd~V~i~~~~L~~ 290 (326)
T cd02811 239 GIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALA-LGADLVGMAGPFLKA 290 (326)
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEcHHHHHH
Confidence 5667777777 899999999999999999998 799999999987743
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=99.87 Aligned_cols=51 Identities=24% Similarity=0.477 Sum_probs=46.5
Q ss_pred cccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 66 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.++|+.++++++..++||+ +.|||.|++++..+++ +|||+|++|++++..+
T Consensus 189 ~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme-~GAdgVaVGSaI~ks~ 241 (293)
T PRK04180 189 QAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQ-LGADGVFVGSGIFKSG 241 (293)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHH-hCCCEEEEcHHhhcCC
Confidence 4689999999999999998 9999999999999997 8999999999988543
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.1e-10 Score=103.82 Aligned_cols=122 Identities=11% Similarity=0.151 Sum_probs=90.8
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEECCCC---------ChHHHHHHHHHHHHc------CCCEEEEecCCCCCcC--C--C
Q 026945 4 LPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDA------GCSLLAVHGRTRDEKD--G--K 63 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~-pvsvKiR~g~---------~~~~~~~~a~~l~~~------G~~~i~vh~rt~~~~~--~--~ 63 (230)
-.++.||+++|+++++- .|.+|+.... ..++..++++.+++. |+|+|+|+........ . .
T Consensus 215 ~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~ 294 (391)
T PLN02411 215 CRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGR 294 (391)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccc
Confidence 46889999999999842 4778877421 124567788888763 5999999875432100 0 0
Q ss_pred CC-ccc-HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 64 KF-RAD-WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 64 ~~-~~~-~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+ ... ....+++++.+++||+++|++ +.+.+++++++..||.|.+||+++.||++..+++++
T Consensus 295 ~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~g 358 (391)
T PLN02411 295 HGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKLN 358 (391)
T ss_pred cCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhcC
Confidence 01 111 245688999999999999999 679999999866699999999999999999988764
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.11 E-value=8e-10 Score=98.03 Aligned_cols=98 Identities=21% Similarity=0.282 Sum_probs=77.6
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEcCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
+++.+++. +++|.+.+. +.+.++.++++|+|.|++|++.... +.+ ..+|..+.++++.+++|||++||
T Consensus 101 ~i~~lk~~-g~~v~~~v~-------s~~~a~~a~~~GaD~Ivv~g~eagG---h~g~~~~~~ll~~v~~~~~iPviaaGG 169 (307)
T TIGR03151 101 YIPRLKEN-GVKVIPVVA-------SVALAKRMEKAGADAVIAEGMESGG---HIGELTTMALVPQVVDAVSIPVIAAGG 169 (307)
T ss_pred HHHHHHHc-CCEEEEEcC-------CHHHHHHHHHcCCCEEEEECcccCC---CCCCCcHHHHHHHHHHHhCCCEEEECC
Confidence 44445443 445544332 3577899999999999999995543 222 34799999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|.+.+++.+++. .|||+||+|+.++.-+..
T Consensus 170 I~~~~~~~~al~-~GA~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 170 IADGRGMAAAFA-LGAEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCHHHHHHHHH-cCCCEeecchHHhccccc
Confidence 999999999998 899999999999887654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=93.07 Aligned_cols=103 Identities=23% Similarity=0.401 Sum_probs=81.0
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.+.++++.+++..++|+.+.+. +.+.+..+.++|++++.+ |+++.... .....+++.++++++.+++||
T Consensus 110 ~~~~~i~~~~~~g~~~iiv~v~-------t~~ea~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~l~~i~~~~~ipv 180 (219)
T cd04729 110 TLAELIKRIHEEYNCLLMADIS-------TLEEALNAAKLGFDIIGTTLSGYTEETA--KTEDPDFELLKELRKALGIPV 180 (219)
T ss_pred CHHHHHHHHHHHhCCeEEEECC-------CHHHHHHHHHcCCCEEEccCcccccccc--CCCCCCHHHHHHHHHhcCCCE
Confidence 7788888887765688887653 223457888999999965 45554332 223468999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++|||++++++.++++ .|||+|++|++++...+
T Consensus 181 ia~GGI~~~~~~~~~l~-~GadgV~vGsal~~~~~ 214 (219)
T cd04729 181 IAEGRINSPEQAAKALE-LGADAVVVGSAITRPEH 214 (219)
T ss_pred EEeCCCCCHHHHHHHHH-CCCCEEEEchHHhChHh
Confidence 99999999999999998 79999999998765544
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=87.03 Aligned_cols=102 Identities=20% Similarity=0.257 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
|+...++++++++.+ ++|+.+|++........ .+.+.|+++|.+++++..+......+.....+..++...++|
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 172 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELAAA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVP 172 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCC
Confidence 456788999999887 89999999875432221 178899999999998775432111111124566666778899
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|+++|||++++++.++++ .|||+|++||
T Consensus 173 i~~~GGi~~~~~~~~~~~-~Gad~v~vgs 200 (200)
T cd04722 173 VIAGGGINDPEDAAEALA-LGADGVIVGS 200 (200)
T ss_pred EEEECCCCCHHHHHHHHH-hCCCEEEecC
Confidence 999999999999999998 5999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-09 Score=93.79 Aligned_cols=118 Identities=15% Similarity=0.135 Sum_probs=91.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEE-----CC---CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKI-----RV---FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKi-----R~---g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+++|+++.++.+...+.+-+.+.+|. .+ ||. ..+..++++.+++.|+..|.++...+... ..++|++
T Consensus 107 ~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt---~~G~d~~ 183 (243)
T TIGR01919 107 LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL---SGGPNEL 183 (243)
T ss_pred hCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc---CCCcCHH
Confidence 36899999998887554333333441 11 342 23578999999999999999999877643 3467999
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHH--HHhhCCcEEEEehhhhhCCcccc
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~--l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.++++++.+++||+++|||.|.+|+.++ +...|++||++|++++.+---+.
T Consensus 184 l~~~l~~~~~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~ 236 (243)
T TIGR01919 184 LLEVVAARTDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLE 236 (243)
T ss_pred HHHHHHhhCCCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHH
Confidence 9999999999999999999999999986 43469999999999987754333
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=94.02 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 67 ADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
++++.++++++..++||+ +.|||.|++++..+++ .|||||++|+++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~me-lGAdGVaVGSaI~k 233 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFK 233 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHH-cCCCEEEEhHHhhc
Confidence 578999999998899998 9999999999999997 89999999999885
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=91.80 Aligned_cols=102 Identities=19% Similarity=0.289 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.+.++++.+++..++|+.+.+. + .+-++.+.+.|++++.++.+ +.... ...+.+++.++++++.+++|
T Consensus 105 ~~~~~~i~~~~~~~~i~vi~~v~---t----~ee~~~a~~~G~d~i~~~~~g~t~~~~--~~~~~~~~~i~~i~~~~~iP 175 (221)
T PRK01130 105 ETLAELVKRIKEYPGQLLMADCS---T----LEEGLAAQKLGFDFIGTTLSGYTEETK--KPEEPDFALLKELLKAVGCP 175 (221)
T ss_pred CCHHHHHHHHHhCCCCeEEEeCC---C----HHHHHHHHHcCCCEEEcCCceeecCCC--CCCCcCHHHHHHHHHhCCCC
Confidence 56778888887644678776543 2 23357889999999987533 32211 12345789999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|++.|||+|++++.++++ .|+|+|++|++++..
T Consensus 176 via~GGI~t~~~~~~~l~-~GadgV~iGsai~~~ 208 (221)
T PRK01130 176 VIAEGRINTPEQAKKALE-LGAHAVVVGGAITRP 208 (221)
T ss_pred EEEECCCCCHHHHHHHHH-CCCCEEEEchHhcCC
Confidence 999999999999999997 799999999986653
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-09 Score=91.03 Aligned_cols=90 Identities=21% Similarity=0.356 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+..+.+++|+.+.+.|+|.|++-..|.+... ...++++++++++.+.||+...|||+|.+|+.++|. .|||-|.|.
T Consensus 28 d~GDpVelA~~Y~e~GADElvFlDItAs~~g---r~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~-aGADKVSIN 103 (256)
T COG0107 28 DAGDPVELAKRYNEEGADELVFLDITASSEG---RETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLR-AGADKVSIN 103 (256)
T ss_pred hcCChHHHHHHHHHcCCCeEEEEeccccccc---chhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHH-cCCCeeeeC
Confidence 3457899999999999999999999886432 257899999999999999999999999999999997 899999999
Q ss_pred hhhhhCCccccchh
Q 026945 111 ESLLENPALFAGFR 124 (230)
Q Consensus 111 R~~l~nP~lf~~~~ 124 (230)
.+++.||.+.+++.
T Consensus 104 saAv~~p~lI~~~a 117 (256)
T COG0107 104 SAAVKDPELITEAA 117 (256)
T ss_pred hhHhcChHHHHHHH
Confidence 99999999987654
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=90.48 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.|+++...+.. ...+.+++.++++.+.+++||+++|||+|.+++.++++ .||++|++|++
T Consensus 30 ~dp~~~a~~~~~~g~~~i~i~dl~~~~---~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~-~G~~~vilg~~ 105 (232)
T TIGR03572 30 GDPVNAARIYNAKGADELIVLDIDASK---RGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLS-LGADKVSINTA 105 (232)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCcc---cCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChh
Confidence 378899999999999999999988753 23367999999999999999999999999999999876 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++..
T Consensus 106 ~l~~~~~~~~~~~ 118 (232)
T TIGR03572 106 ALENPDLIEEAAR 118 (232)
T ss_pred HhcCHHHHHHHHH
Confidence 9999998887654
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.4e-09 Score=92.02 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=79.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe---cCC---CCCcCCCCCcccH--HHHHHHH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---GRT---RDEKDGKKFRADW--NAIKAVK 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh---~rt---~~~~~~~~~~~~~--~~i~~i~ 76 (230)
+.+.+.++.+++.+..|+-++=.++ +.+.++.+.++|++.|.|+ |++ +... + .+..+| ..+.+++
T Consensus 122 ~~~~~~i~~i~~~~p~~~vi~GnV~-----t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~-g-~g~~~~~l~ai~ev~ 194 (321)
T TIGR01306 122 NSVINMIKHIKTHLPDSFVIAGNVG-----TPEAVRELENAGADATKVGIGPGKVCITKIKT-G-FGTGGWQLAALRWCA 194 (321)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCC-----CHHHHHHHHHcCcCEEEECCCCCccccceeee-c-cCCCchHHHHHHHHH
Confidence 6778889999988766654444332 5678999999999999998 443 2221 1 123344 4888899
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+..++|||++|||++..|+.++|. .|||+||+||.+-+
T Consensus 195 ~a~~~pVIadGGIr~~~Di~KALa-~GAd~Vmig~~~ag 232 (321)
T TIGR01306 195 KAARKPIIADGGIRTHGDIAKSIR-FGASMVMIGSLFAG 232 (321)
T ss_pred HhcCCeEEEECCcCcHHHHHHHHH-cCCCEEeechhhcC
Confidence 888999999999999999999998 79999999986654
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-08 Score=86.79 Aligned_cols=108 Identities=15% Similarity=0.209 Sum_probs=87.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+||+++.++.+...++ +-+++-.|- +|. ..+..++++.+++.|+..+.+....+.. +..++|++.+
T Consensus 110 ~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dG---t~~G~~~~li 184 (234)
T PRK13587 110 QDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDG---KMSGPNFELT 184 (234)
T ss_pred cCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcC---CCCccCHHHH
Confidence 6899999998888544 334443332 342 2346899999999999999998877663 3346799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+++.+.+++||++.|||+|++|+.++++ .|+++|.+|++++.
T Consensus 185 ~~l~~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivG~a~~~ 226 (234)
T PRK13587 185 GQLVKATTIPVIASGGIRHQQDIQRLAS-LNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEhHHHHh
Confidence 9999999999999999999999999996 89999999999886
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=91.70 Aligned_cols=109 Identities=24% Similarity=0.198 Sum_probs=81.4
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++... +||.+ |. -.+.+.++.+.++|+|+|.++.. ++... ..+.++|..+..+
T Consensus 118 ~~~~~~~~i~~ik~~~p~v~Vi~----G~--v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~--g~g~p~~~~i~~v 189 (325)
T cd00381 118 HSVYVIEMIKFIKKKYPNVDVIA----GN--VVTAEAARDLIDAGADGVKVGIGPGSICTTRIVT--GVGVPQATAVADV 189 (325)
T ss_pred CcHHHHHHHHHHHHHCCCceEEE----CC--CCCHHHHHHHHhcCCCEEEECCCCCcCcccceeC--CCCCCHHHHHHHH
Confidence 34567788888888652 55544 21 23457788999999999999632 22221 2345688888887
Q ss_pred HhhC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 76 KNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 76 ~~~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
.+.. ++|||++|||.++.|+.+++. .|||+||+|+.+..-.+-.
T Consensus 190 ~~~~~~~~vpVIA~GGI~~~~di~kAla-~GA~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 190 AAAARDYGVPVIADGGIRTSGDIVKALA-AGADAVMLGSLLAGTDESP 236 (325)
T ss_pred HHHHhhcCCcEEecCCCCCHHHHHHHHH-cCCCEEEecchhcccccCC
Confidence 6654 699999999999999999997 8999999999998865543
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.6e-08 Score=91.17 Aligned_cols=112 Identities=20% Similarity=0.225 Sum_probs=83.6
Q ss_pred CChHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC------CCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~------~~~~~~~~~~i~~ 74 (230)
.+|+-+.++++.+++.++ +||.+|+-.+.+ ..++++.++..|+|+|+|.+....... ...+.+....+.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~---~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~ 272 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHG---EGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLAR 272 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCCC---HHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHH
Confidence 457778999999999987 999999986533 347788888888999999886322110 0112222334444
Q ss_pred HHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 75 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 75 i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.+ ++||++.|||+|..|+.+++. .|||+|.+||++|.--
T Consensus 273 v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala-LGAd~V~ig~~~l~al 321 (392)
T cd02808 273 AHQALVKNGLRDRVSLIASGGLRTGADVAKALA-LGADAVGIGTAALIAL 321 (392)
T ss_pred HHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH-cCCCeeeechHHHHhc
Confidence 44432 699999999999999999998 7999999999998643
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=86.90 Aligned_cols=116 Identities=21% Similarity=0.252 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHH-hhcCCceEEEEECC--------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 3 NLPLVKSLVEKL-ALNLNVPVSCKIRV--------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v-~~~~~~pvsvKiR~--------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
||+++.++++.. .+.+-+.+.+|..- ||. .-+..+++..+.+.|+..|.++...++.+ ..++|.+
T Consensus 121 ~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGt---l~G~d~e 197 (262)
T PLN02446 121 DLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGK---RLGIDEE 197 (262)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCc---ccCCCHH
Confidence 399999999999 44444445555211 342 23578899999999999999999877743 3367999
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhh--hhCCcccc
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESL--LENPALFA 121 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~--l~nP~lf~ 121 (230)
.++++++.+++|||++|||.|.+|+.++.+.. |+.+|.+|+++ +.+-.-+.
T Consensus 198 l~~~l~~~~~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ 251 (262)
T PLN02446 198 LVALLGEHSPIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYD 251 (262)
T ss_pred HHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHH
Confidence 99999999999999999999999999988743 78999999999 55543333
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=87.23 Aligned_cols=111 Identities=27% Similarity=0.411 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHhh-cCCceEEEEEC--C---CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSCKIR--V---FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsvKiR--~---g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.||+++.++.+.... .+-+.+.+|-. + +|.. .+..++++.+.+.|+..+.++.-.+... ..++|++.+
T Consensus 107 ~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt---~~G~d~~~~ 183 (229)
T PF00977_consen 107 EDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGT---MQGPDLELL 183 (229)
T ss_dssp HCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTT---SSS--HHHH
T ss_pred hchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCC---cCCCCHHHH
Confidence 489999999999866 33334444432 1 3432 3688999999999999999999877643 335799999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+++++.+++||+++|||.|.+|+.++.+ .|+++|++|++++..
T Consensus 184 ~~l~~~~~~~viasGGv~~~~Dl~~l~~-~G~~gvivg~al~~g 226 (229)
T PF00977_consen 184 KQLAEAVNIPVIASGGVRSLEDLRELKK-AGIDGVIVGSALHEG 226 (229)
T ss_dssp HHHHHHHSSEEEEESS--SHHHHHHHHH-TTECEEEESHHHHTT
T ss_pred HHHHHHcCCCEEEecCCCCHHHHHHHHH-CCCcEEEEehHhhCC
Confidence 9999999999999999999999999884 899999999998754
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=2e-08 Score=86.19 Aligned_cols=112 Identities=16% Similarity=0.219 Sum_probs=87.2
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECC------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRV------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
++||+++.++ ....+. +-+++-.|- ||. .-+..++++.+++.|+..|.+....+... ..++|++.
T Consensus 106 ~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt---~~G~d~el 179 (241)
T PRK14114 106 LEDPSFLKFL-KEIDVE--PVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT---LQEHDFSL 179 (241)
T ss_pred hCCHHHHHHH-HHhCCC--EEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhc---CCCcCHHH
Confidence 3689999998 454333 445554443 332 22578999999999999999998777643 23579999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHh----hC-CcEEEEehhhhhCCc
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEE----TG-CEGVLSAESLLENPA 118 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~----~g-adgVmigR~~l~nP~ 118 (230)
++++++.+++||+++|||.|.+|+.++.+. .| ++||.+|++++.+--
T Consensus 180 ~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i 231 (241)
T PRK14114 180 TRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGIL 231 (241)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCC
Confidence 999999999999999999999999988763 15 999999999887653
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=84.74 Aligned_cols=101 Identities=23% Similarity=0.370 Sum_probs=74.9
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+++.+++ .++++.+++. + .+.++.+.+.|+++|.++++.............++.++++++.+++||+++|||
T Consensus 94 ~~~~~~~-~~i~~i~~v~---~----~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI 165 (236)
T cd04730 94 VVERLKA-AGIKVIPTVT---S----VEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGI 165 (236)
T ss_pred HHHHHHH-cCCEEEEeCC---C----HHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCC
Confidence 3444443 3567766653 1 245677788999999999874321111111245889999999899999999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++++++.++++ .|+|||++|++++..+..
T Consensus 166 ~~~~~v~~~l~-~GadgV~vgS~l~~~~e~ 194 (236)
T cd04730 166 ADGRGIAAALA-LGADGVQMGTRFLATEES 194 (236)
T ss_pred CCHHHHHHHHH-cCCcEEEEchhhhcCccc
Confidence 99999999997 899999999999987764
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.1e-09 Score=87.59 Aligned_cols=89 Identities=27% Similarity=0.421 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.+++........ + .+.+++.++++++.+++||++.|||+|.+|+.++++ .|||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~-g--~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~-~Ga~~vilg~~ 105 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKA-G--KPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLD-AGVSRVIIGTA 105 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc-C--CcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHH-cCCCEEEECch
Confidence 3688999999999999999999754321 1 257899999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|.++.++..
T Consensus 106 ~l~~~~~l~ei~~ 118 (233)
T PRK00748 106 AVKNPELVKEACK 118 (233)
T ss_pred HHhCHHHHHHHHH
Confidence 9999988876543
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=91.34 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh---hC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN---AL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~---~~ 79 (230)
++....+.++.+++.+++||.+|-= . +.+.++.+.++|++.|.|++....+... .....+.+.++.+ .+
T Consensus 197 ~~~~~~~~i~~l~~~~~~PvivKgv---~---~~~dA~~a~~~G~d~I~vsnhgG~~~d~--~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 197 DPTLTWDDIKWLRKHTKLPIVLKGV---Q---TVEDAVLAAEYGVDGIVLSNHGGRQLDT--APAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCCCCHHHHHHHHHhcCCcEEEEcC---C---CHHHHHHHHHcCCCEEEEECCCcccCCC--CCCHHHHHHHHHHHHHHh
Confidence 3456678899999999999999922 1 3567889999999999998743332221 1233455666655 23
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++|||+.|||++..|+.++|. .|||+|+|||+++..+.
T Consensus 269 ~~~~~vi~~GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 269 FDKIEVYVDGGVRRGTDVLKALC-LGAKAVGLGRPFLYALS 308 (344)
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHHHh
Confidence 599999999999999999997 89999999999998764
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=87.49 Aligned_cols=103 Identities=20% Similarity=0.320 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE--EecCCCC------------------------Cc
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA--VHGRTRD------------------------EK 60 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~--vh~rt~~------------------------~~ 60 (230)
+.+++..++...+.|+.+-++ +++-+....+.|+|+|- ++|-|.. ..
T Consensus 100 ~~~~~~~iK~~~~~l~MAD~s-------tleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~ 172 (283)
T cd04727 100 ADEEHHIDKHKFKVPFVCGAR-------NLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEEL 172 (283)
T ss_pred HHHHHHHHHHHcCCcEEccCC-------CHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 678888898877999999887 34457778899999994 4445543 10
Q ss_pred CC--CCCcccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 61 DG--KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 61 ~~--~~~~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.. ....++|+.++++++.+++||+ +.|||.|++++..+++ .|||+|++|++++.-+
T Consensus 173 ~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e-~GAdgVaVGSAI~~a~ 232 (283)
T cd04727 173 YAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSE 232 (283)
T ss_pred HhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHH-cCCCEEEEcHHhhcCC
Confidence 00 0124689999999999999997 9999999999999997 8999999999988533
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=83.15 Aligned_cols=105 Identities=21% Similarity=0.349 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE--EecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA--VHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~--vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.|+.+.++++.+++.. .++..-+. +++-+....++|+|.|. ++|-|....+ ..+|++.++++++. +
T Consensus 77 Rp~~l~~li~~i~~~~-~l~MADis-------t~ee~~~A~~~G~D~I~TTLsGYT~~t~~---~~pD~~lv~~l~~~-~ 144 (192)
T PF04131_consen 77 RPETLEELIREIKEKY-QLVMADIS-------TLEEAINAAELGFDIIGTTLSGYTPYTKG---DGPDFELVRELVQA-D 144 (192)
T ss_dssp -SS-HHHHHHHHHHCT-SEEEEE-S-------SHHHHHHHHHTT-SEEE-TTTTSSTTSTT---SSHHHHHHHHHHHT-T
T ss_pred CCcCHHHHHHHHHHhC-cEEeeecC-------CHHHHHHHHHcCCCEEEcccccCCCCCCC---CCCCHHHHHHHHhC-C
Confidence 4677889999999987 88888776 34557888999999994 4555554332 46799999999986 9
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+|||+-|+|+||+++.++|+ .||++|.+|. ++.+|++..
T Consensus 145 ~pvIaEGri~tpe~a~~al~-~GA~aVVVGs-AITrP~~It 183 (192)
T PF04131_consen 145 VPVIAEGRIHTPEQAAKALE-LGAHAVVVGS-AITRPQEIT 183 (192)
T ss_dssp SEEEEESS--SHHHHHHHHH-TT-SEEEE-H-HHH-HHHHH
T ss_pred CcEeecCCCCCHHHHHHHHh-cCCeEEEECc-ccCCHHHHH
Confidence 99999999999999999997 8999999996 677777543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=86.87 Aligned_cols=88 Identities=27% Similarity=0.413 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+.+.|++.+++-..+.... + ...+++.++++.+..++|++++|||+|.+++..+++ .|||+|++|..+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~-~--~~~~~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~-~Ga~~v~iGs~~ 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE-G--ERKNAEAIEKIIEAVGVPVQLGGGIRSAEDAASLLD-LGVDRVILGTAA 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc-C--CcccHHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHH-cCCCEEEEChHH
Confidence 678999999999999987655443211 1 256899999999999999999999999999999996 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.+|+++.++..
T Consensus 109 ~~~~~~~~~i~~ 120 (241)
T PRK13585 109 VENPEIVRELSE 120 (241)
T ss_pred hhChHHHHHHHH
Confidence 999999887754
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.4e-08 Score=82.61 Aligned_cols=109 Identities=20% Similarity=0.199 Sum_probs=86.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVF-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
++ +++.++++...+. .+-+++-.+-+ .+..+..++++.+++. ++.+++....+... ..+.|++.++++.
T Consensus 112 ~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~di~~~G~---~~g~~~~~~~~i~ 185 (233)
T cd04723 112 PS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKW-PEELIVLDIDRVGS---GQGPDLELLERLA 185 (233)
T ss_pred cc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHh-CCeEEEEEcCcccc---CCCcCHHHHHHHH
Confidence 46 7778888887541 23445444433 1234578899999999 99999998776532 2367999999999
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+++||++.|||+|.+|+.++++ .|+++|.+|++++.+-
T Consensus 186 ~~~~ipvi~~GGi~s~edi~~l~~-~G~~~vivGsal~~g~ 225 (233)
T cd04723 186 ARADIPVIAAGGVRSVEDLELLKK-LGASGALVASALHDGG 225 (233)
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEehHHHcCC
Confidence 999999999999999999999997 7999999999998773
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.2e-08 Score=89.38 Aligned_cols=105 Identities=20% Similarity=0.145 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
|+.+..+.++.+++.++.||.+|= + - +.+-++.+.+.|+|.|.|++....|..+ .++..+.+.++++.+++|
T Consensus 220 d~~~~w~~i~~ir~~~~~pviiKg-V-~----~~eda~~a~~~G~d~I~VSnhGGrqld~--~~~~~~~L~ei~~~~~~~ 291 (361)
T cd04736 220 DASFNWQDLRWLRDLWPHKLLVKG-I-V----TAEDAKRCIELGADGVILSNHGGRQLDD--AIAPIEALAEIVAATYKP 291 (361)
T ss_pred CCcCCHHHHHHHHHhCCCCEEEec-C-C----CHHHHHHHHHCCcCEEEECCCCcCCCcC--CccHHHHHHHHHHHhCCe
Confidence 344556788999999999999993 2 1 3456888899999999986543333222 245678889998888999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|++.|||++..|+.++|. .|||+||+||+++..
T Consensus 292 vi~dGGIr~g~Dv~KALa-LGA~aV~iGr~~l~~ 324 (361)
T cd04736 292 VLIDSGIRRGSDIVKALA-LGANAVLLGRATLYG 324 (361)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHHH
Confidence 999999999999999997 899999999977753
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-08 Score=82.65 Aligned_cols=108 Identities=14% Similarity=0.082 Sum_probs=84.6
Q ss_pred CChHHHHHHHHHHh-hcCCceEEEEEC------C-CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 2 DNLPLVKSLVEKLA-LNLNVPVSCKIR------V-FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 2 ~~p~~~~eiv~~v~-~~~~~pvsvKiR------~-g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
++|+++.++.+... +. +-+++-.| + +|. ..+..++++.+++.|+..|.++.-.+..+ ..++|++.
T Consensus 107 ~~p~~~~~~~~~~g~~~--ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt---~~G~d~el 181 (232)
T PRK13586 107 TNFNLFHDIVREIGSNR--VLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGT---TKGIDYNV 181 (232)
T ss_pred CCHHHHHHHHHHhCCCC--EEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEeccccccc---CcCcCHHH
Confidence 68999999988883 33 33444432 1 342 12577999999999999999998877643 33679999
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++.+++. ..|++++|||+|.+|+.++.+ .|++||.+|++++.+
T Consensus 182 ~~~~~~~-~~~viasGGv~s~~Dl~~l~~-~G~~gvivg~Aly~g 224 (232)
T PRK13586 182 KDYARLI-RGLKEYAGGVSSDADLEYLKN-VGFDYIIVGMAFYLG 224 (232)
T ss_pred HHHHHhC-CCCEEEECCCCCHHHHHHHHH-CCCCEEEEehhhhcC
Confidence 9999876 567999999999999999875 799999999998854
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=89.70 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+|.+-.+-++.+++.+++||.+|-=+. .+-++.+.++|+|.|.|++....+.. .+++..+.+.++++.+ +
T Consensus 207 ~~~~tW~~i~~lr~~~~~PvivKgV~~------~~dA~~a~~~GvD~I~vsn~GGr~~d--~~~~t~~~L~ev~~av~~~ 278 (364)
T PLN02535 207 DASLSWKDIEWLRSITNLPILIKGVLT------REDAIKAVEVGVAGIIVSNHGARQLD--YSPATISVLEEVVQAVGGR 278 (364)
T ss_pred CCCCCHHHHHHHHhccCCCEEEecCCC------HHHHHHHHhcCCCEEEEeCCCcCCCC--CChHHHHHHHHHHHHHhcC
Confidence 344555778888888899999994321 24478999999999999764332221 1244467788887766 6
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|||+.|||++..|+.++|. .|||+|++||+++..+.
T Consensus 279 ipVi~dGGIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~ 315 (364)
T PLN02535 279 VPVLLDGGVRRGTDVFKALA-LGAQAVLVGRPVIYGLA 315 (364)
T ss_pred CCEEeeCCCCCHHHHHHHHH-cCCCEEEECHHHHhhhh
Confidence 99999999999999999997 89999999998887655
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=85.00 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++|+.+.+.|++.|++-.-...+ + .+.+.+.|+++.+.+++||.+.|||+|.+|+++++. .||+.|.+|.++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g--~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-~Ga~kvviGs~~ 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--G--RGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-TGCARVNIGTAA 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--C--CCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchH
Confidence 68899999999999999999877653 2 256889999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.||.++.++..
T Consensus 108 l~~p~l~~~i~~ 119 (241)
T PRK14024 108 LENPEWCARVIA 119 (241)
T ss_pred hCCHHHHHHHHH
Confidence 999999987753
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=89.06 Aligned_cols=103 Identities=21% Similarity=0.195 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
|.+-.+-++.+++.+++||.+|==. +.+-++.+.+.|+|.|.|++...-+. ..+++..+.+.++++.+ ++
T Consensus 238 ~~~tW~~i~~lr~~~~~pvivKgV~------~~~dA~~a~~~G~d~I~vsnhGGr~~--d~~~~t~~~L~ei~~~~~~~~ 309 (383)
T cd03332 238 PSLTWEDLAFLREWTDLPIVLKGIL------HPDDARRAVEAGVDGVVVSNHGGRQV--DGSIAALDALPEIVEAVGDRL 309 (383)
T ss_pred CCCCHHHHHHHHHhcCCCEEEecCC------CHHHHHHHHHCCCCEEEEcCCCCcCC--CCCcCHHHHHHHHHHHhcCCC
Confidence 4444567888888889999999211 24567888899999999975433232 22355678888888876 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 310 ~vi~dGGIr~G~Dv~KALa-LGA~~v~iGr~~l~ 342 (383)
T cd03332 310 TVLFDSGVRTGADIMKALA-LGAKAVLIGRPYAY 342 (383)
T ss_pred eEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 9999999999999999997 79999999998873
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-07 Score=80.51 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHhhcCCceEEEE-ECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCK-IRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvK-iR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
++|+++.++.. -+.+.+| -++ +|. +...++.+.+.+.|+ .+.+..-.+.. ...++|++.++++++
T Consensus 113 ~~p~~l~~~~~------vvslD~~~g~v~~~g~~-~~~~~~~~~~~~~g~-~ii~tdI~~dG---t~~G~d~eli~~i~~ 181 (221)
T TIGR00734 113 DITELLRECYT------VVSLDFKEKFLDASGLF-ESLEEVRDFLNSFDY-GLIVLDIHSVG---TMKGPNLELLTKTLE 181 (221)
T ss_pred CCHHHHHHhhh------EEEEEeECCcccccccc-ccHHHHHHHHHhcCC-EEEEEECCccc---cCCCCCHHHHHHHHh
Confidence 57777776541 1223333 111 343 356678888888998 67766655542 334679999999999
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+++||+++|||+|++|+.++.+ .|+|+|++|++++..
T Consensus 182 ~~~~pvia~GGi~s~ed~~~l~~-~Ga~~vivgsal~~g 219 (221)
T TIGR00734 182 LSEHPVMLGGGISGVEDLELLKE-MGVSAVLVATAVHKG 219 (221)
T ss_pred hCCCCEEEeCCCCCHHHHHHHHH-CCCCEEEEhHHhhCC
Confidence 99999999999999999998665 799999999998754
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5e-08 Score=82.01 Aligned_cols=108 Identities=22% Similarity=0.319 Sum_probs=87.9
Q ss_pred CCChHHHHHHHHHHhhcC-CceEEEEECC-C----C----------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC
Q 026945 1 MDNLPLVKSLVEKLALNL-NVPVSCKIRV-F----P----------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK 64 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~-~~pvsvKiR~-g----~----------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~ 64 (230)
++||+++.++-+..-.++ -+.|.+|-+. | | +.-+++++++.+++.|+-.|.+....++. ..
T Consensus 107 v~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DG---tk 183 (256)
T COG0107 107 VKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDG---TK 183 (256)
T ss_pred hcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeecccc---cc
Confidence 368999988888887664 4556667653 1 1 12368999999999999999998876653 34
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+.|.+.++.+++.+++|||++||..+++++.+.+.++.||++..+.
T Consensus 184 ~GyDl~l~~~v~~~v~iPvIASGGaG~~ehf~eaf~~~~adAaLAAs 230 (256)
T COG0107 184 AGYDLELTRAVREAVNIPVIASGGAGKPEHFVEAFTEGKADAALAAS 230 (256)
T ss_pred cCcCHHHHHHHHHhCCCCEEecCCCCcHHHHHHHHHhcCccHHHhhh
Confidence 46799999999999999999999999999999999988899887654
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-08 Score=87.14 Aligned_cols=103 Identities=27% Similarity=0.301 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
|.+.-+-++.+++.+++||.||-=. ..+-++.+.++|+|.|.|++....|.. ..++..+.+.++++.+ ++
T Consensus 208 ~~ltW~dl~wlr~~~~~PvivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld--~~p~t~~~L~ei~~~~~~~~ 279 (366)
T PLN02979 208 RTLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRI 279 (366)
T ss_pred CCCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHhcCCCEEEECCCCcCCCC--CchhHHHHHHHHHHHhCCCC
Confidence 3444566888899999999999643 246688999999999999876544432 2244567777787765 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.++|. .|||+|++||.++.
T Consensus 280 ~Vi~dGGIr~G~Di~KALA-LGAdaV~iGrp~L~ 312 (366)
T PLN02979 280 PVFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 312 (366)
T ss_pred eEEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 9999999999999999998 89999999996664
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.6e-08 Score=83.29 Aligned_cols=85 Identities=15% Similarity=0.258 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+.+. ++.+++-.+..... + .+.+.+.++++.+.+++||++.|||+|.+|++++++ .|+++|.+|+.+
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~~-g--~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~-~G~~~vivGtaa 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAFE-G--KPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYE-IGVENVIIGTKA 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchhc-C--CcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHH-CCCCEEEECchh
Confidence 688999999998 99999977765421 1 246899999999999999999999999999999997 799999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+ ||.+++++.
T Consensus 106 ~-~~~~l~~~~ 115 (228)
T PRK04128 106 F-DLEFLEKVT 115 (228)
T ss_pred c-CHHHHHHHH
Confidence 9 999888764
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=83.25 Aligned_cols=88 Identities=6% Similarity=0.136 Sum_probs=77.6
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 34 DTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 34 ~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.|+.+.+ .|++.|+|-.-..... ..+.+.+.|+++.+.+++||.+.|||+|.+++++++. .||+-|.+|..
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~~---~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~-~Ga~kvvigt~ 107 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAKA---QHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFA-AGINYCIVGTK 107 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECccccc---CCcchHHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHH-CCCCEEEECch
Confidence 57789999999 7999999998766532 1257899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.+++++..
T Consensus 108 a~~~~~~l~~~~~ 120 (234)
T PRK13587 108 GIQDTDWLKEMAH 120 (234)
T ss_pred HhcCHHHHHHHHH
Confidence 9999999988754
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=83.79 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+.+.|++.|++..-.+... ..+.+.+.++++.+.+++||++.|||+|.+|+.+++. .|+++|.+|++
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~~~---~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~-~G~~~vvigs~ 105 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDASKR---GSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFS-LGVEKVSINTA 105 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcC---CCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHH-CCCCEEEEChH
Confidence 3789999999999999999998766532 1257899999999999999999999999999999995 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|.++.++..
T Consensus 106 ~~~~~~~~~~~~~ 118 (258)
T PRK01033 106 ALEDPDLITEAAE 118 (258)
T ss_pred HhcCHHHHHHHHH
Confidence 9999998887643
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=85.67 Aligned_cols=103 Identities=24% Similarity=0.273 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
+.+..+-++.+++.+++||.||==+ ..+-++.+.+.|++.|.|++.-..|. ..+++..+.+.++++.+ ++
T Consensus 210 ~~~~w~~i~~~~~~~~~pvivKgv~------~~~da~~~~~~G~~~i~vs~hGGr~~--d~~~~~~~~L~~i~~~~~~~~ 281 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWKLPVIVKGVL------SPEDAKRAVDAGVDGIDVSNHGGRQL--DWGPPTIDALPEIRAAVGDDI 281 (356)
T ss_dssp TT-SHHHHHHHHHHCSSEEEEEEE-------SHHHHHHHHHTT-SEEEEESGTGTSS--TTS-BHHHHHHHHHHHHTTSS
T ss_pred CCCCHHHHHHHhcccCCceEEEecc------cHHHHHHHHhcCCCEEEecCCCcccC--ccccccccccHHHHhhhcCCe
Confidence 4444566888888999999999543 23557899999999999976433332 22456678888888876 49
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.|||++..|+.+++. .||++|.+||.++.
T Consensus 282 ~i~~dgGir~g~Dv~kala-LGA~~v~igr~~l~ 314 (356)
T PF01070_consen 282 PIIADGGIRRGLDVAKALA-LGADAVGIGRPFLY 314 (356)
T ss_dssp EEEEESS--SHHHHHHHHH-TT-SEEEESHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHH-cCCCeEEEccHHHH
Confidence 9999999999999999998 89999999996654
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.2e-07 Score=86.23 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=76.9
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
-+-++.+++.++.||.+|==+ +.+-++.+.++|++.|.|++....+... .++..+.+.++.+.+ ++||++
T Consensus 234 W~di~~lr~~~~~pvivKgV~------s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~--~~~t~~~L~~i~~a~~~~~~vi~ 305 (381)
T PRK11197 234 WKDLEWIRDFWDGPMVIKGIL------DPEDARDAVRFGADGIVVSNHGGRQLDG--VLSSARALPAIADAVKGDITILA 305 (381)
T ss_pred HHHHHHHHHhCCCCEEEEecC------CHHHHHHHHhCCCCEEEECCCCCCCCCC--cccHHHHHHHHHHHhcCCCeEEe
Confidence 344788888899999999643 2456888899999999996543323211 133457777777665 599999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.|||++..|+.++|. .|||+||+||.++.-
T Consensus 306 dGGIr~g~Di~KALa-LGA~~V~iGr~~l~~ 335 (381)
T PRK11197 306 DSGIRNGLDVVRMIA-LGADTVLLGRAFVYA 335 (381)
T ss_pred eCCcCcHHHHHHHHH-cCcCceeEhHHHHHH
Confidence 999999999999998 799999999977643
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-07 Score=85.50 Aligned_cols=102 Identities=27% Similarity=0.311 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Ccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ip 82 (230)
.+.-+-++-+++.+++||.+|==. ..+-++.+.++|++.|.|++....|.. ..++..+.+.++++.+ ++|
T Consensus 210 ~~tW~di~wlr~~~~~PiivKgV~------~~~dA~~a~~~Gvd~I~VsnhGGrqld--~~~~t~~~L~ei~~av~~~~~ 281 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILVKGVL------TGEDARIAIQAGAAGIIVSNHGARQLD--YVPATISALEEVVKATQGRIP 281 (367)
T ss_pred CCCHHHHHHHHhccCCCEEeecCC------CHHHHHHHHHcCCCEEEECCCCCCCCC--CchhHHHHHHHHHHHhCCCCe
Confidence 334456788888899999999543 246688999999999999876544432 2244567778887765 499
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
|++.|||++..|+.++|. .||++|++||.++.
T Consensus 282 vi~dGGIr~G~Dv~KALA-LGA~aV~iGr~~l~ 313 (367)
T PLN02493 282 VFLDGGVRRGTDVFKALA-LGASGIFIGRPVVF 313 (367)
T ss_pred EEEeCCcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999999998 79999999997664
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=78.43 Aligned_cols=79 Identities=18% Similarity=0.264 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.+..+.+.|+|++.++...........++..|+.++++++.+++||++.||| +++++.++++ +|+|+|++|+++...
T Consensus 106 e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~-~Ga~gvav~s~i~~~ 183 (201)
T PRK07695 106 EEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLA-AGVSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEHHHhcC
Confidence 44677889999999875533322111122457899999999999999999999 8999999986 899999999999854
Q ss_pred C
Q 026945 117 P 117 (230)
Q Consensus 117 P 117 (230)
+
T Consensus 184 ~ 184 (201)
T PRK07695 184 A 184 (201)
T ss_pred C
Confidence 3
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.9e-07 Score=84.40 Aligned_cols=111 Identities=23% Similarity=0.287 Sum_probs=72.0
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC------CCCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD------GKKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~------~~~~~~~~~~i~~ 74 (230)
.+++-+.+.|+.+++.. ++||++|+-.+...+. ++..+.++|+|+|+|.|....... ...|-+....+.+
T Consensus 185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~---~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~ 261 (368)
T PF01645_consen 185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGVED---IAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALAR 261 (368)
T ss_dssp SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHH---HHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHH---HHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHH
Confidence 46888999999999988 8999999987665332 233388999999999986432110 0111121223334
Q ss_pred HHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 75 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 75 i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.+.+ .+.++++|++.|+.|+.+++. .|||+|.+||++|--
T Consensus 262 a~~~L~~~glr~~V~Li~sGgl~t~~dv~kala-LGAD~v~igt~~liA 309 (368)
T PF01645_consen 262 AHQALVKNGLRDRVSLIASGGLRTGDDVAKALA-LGADAVYIGTAALIA 309 (368)
T ss_dssp HHHHHHCTT-CCCSEEEEESS--SHHHHHHHHH-CT-SEEE-SHHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCccCHHHHHHHHh-cCCCeeEecchhhhh
Confidence 33321 489999999999999999997 899999999999864
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=80.48 Aligned_cols=89 Identities=26% Similarity=0.406 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|++.++|........ ..+.+.+.++++.+.+++|+.+.|||++.++++++++ .|||.|++|..
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~---g~~~~~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~-~Ga~~vvlgs~ 103 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKE---GGPVNLPVIKKIVRETGVPVQVGGGIRSLEDVEKLLD-LGVDRVIIGTA 103 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCcccc---CCCCcHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 3688999999999999999987655421 1246899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||..+.++..
T Consensus 104 ~l~d~~~~~~~~~ 116 (230)
T TIGR00007 104 AVENPDLVKELLK 116 (230)
T ss_pred HhhCHHHHHHHHH
Confidence 9999998887653
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-07 Score=75.86 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Ccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ip 82 (230)
+.+.++++.... .++.+.+-+. +. +-++.+.+.|++++.+++++.... +.+.+.+.++++.+ ++|
T Consensus 108 ~~~~~~~~~~~~-~g~~~~v~v~---~~----~e~~~~~~~g~~~i~~t~~~~~~~-----~~~~~~~~~l~~~~~~~~p 174 (217)
T cd00331 108 EQLKELYELARE-LGMEVLVEVH---DE----EELERALALGAKIIGINNRDLKTF-----EVDLNTTERLAPLIPKDVI 174 (217)
T ss_pred HHHHHHHHHHHH-cCCeEEEEEC---CH----HHHHHHHHcCCCEEEEeCCCcccc-----CcCHHHHHHHHHhCCCCCE
Confidence 455566665533 3444434443 11 226667788999999998765431 45678899998874 699
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|++.|||.|++++.++++ .|+|||++|++++..++.
T Consensus 175 via~gGI~s~edi~~~~~-~Ga~gvivGsai~~~~~p 210 (217)
T cd00331 175 LVSESGISTPEDVKRLAE-AGADAVLIGESLMRAPDP 210 (217)
T ss_pred EEEEcCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCH
Confidence 999999999999999986 799999999999987654
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.6e-07 Score=80.06 Aligned_cols=76 Identities=21% Similarity=0.336 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
...++.++++|++.|-.+|...... .|..+++.|+.+++..++|||+.|||.|++|+.++++ .|||+|++|.++..
T Consensus 134 ~~~ar~l~~~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Ame-lGAdgVlV~SAIt~ 209 (248)
T cd04728 134 PVLAKRLEDAGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAK 209 (248)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhcC
Confidence 3567888889999997766554321 3456899999999988999999999999999999997 89999999998874
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=80.95 Aligned_cols=86 Identities=14% Similarity=0.267 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|++.++|-.-+.... + .+.+++.++++.+.+ +||...|||+|.+++++.++ .||+-|.+|..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~-g--~~~n~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~-~Ga~rvvigT~ 104 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIE-N--SVENLPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCccc-C--CcchHHHHHHHHhhc-CcEEEecCCCCHHHHHHHHH-CCCCEEEECch
Confidence 4789999999999999999988765421 1 256899999999987 89999999999999999997 89999999999
Q ss_pred hhhCCccccch
Q 026945 113 LLENPALFAGF 123 (230)
Q Consensus 113 ~l~nP~lf~~~ 123 (230)
++.||.+++++
T Consensus 105 a~~~p~~l~~~ 115 (241)
T PRK14114 105 VLEDPSFLKFL 115 (241)
T ss_pred hhCCHHHHHHH
Confidence 99999988877
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-07 Score=78.90 Aligned_cols=76 Identities=21% Similarity=0.332 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..+++.++++|++.|-.+|..-.. + .|..+++.++.+++..++|||+.|||.+++|+.++++ .|||+|++|.++..
T Consensus 134 ~~~ak~l~~~G~~~vmPlg~pIGs--g-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Ame-lGAdgVlV~SAItk 209 (250)
T PRK00208 134 PVLAKRLEEAGCAAVMPLGAPIGS--G-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIAV 209 (250)
T ss_pred HHHHHHHHHcCCCEeCCCCcCCCC--C-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhC
Confidence 456788888999999666554432 1 3456789999999988999999999999999999997 89999999998874
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.8e-07 Score=77.44 Aligned_cols=110 Identities=17% Similarity=0.156 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHH-hhcCCceEEEEE------CC---CCCh---HHHH-HHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 3 NLPLVKSLVEKL-ALNLNVPVSCKI------RV---FPNL---QDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v-~~~~~~pvsvKi------R~---g~~~---~~~~-~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
+|+++.++.+.. .+.+-+-+.+|. ++ ||.. -+.. ++++.+++. +..|.++...++.+ ..++|
T Consensus 114 ~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGt---l~G~d 189 (253)
T TIGR02129 114 DLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGL---CKGID 189 (253)
T ss_pred CHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCc---cccCC
Confidence 488888998888 454444455541 11 3432 2466 999999999 99999999887743 34679
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHh-hCCcEEEEehhhhhC
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAESLLEN 116 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-~gadgVmigR~~l~n 116 (230)
.+.++++++.+++|||++||+.|.+|+.++.+. .|..++.+|++++.-
T Consensus 190 lel~~~l~~~~~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f 238 (253)
T TIGR02129 190 EELVSKLGEWSPIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF 238 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence 999999999999999999999999999987432 367789999988753
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.9e-08 Score=82.63 Aligned_cols=89 Identities=24% Similarity=0.464 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|++.++|..-..... + .+.+++.|+++.+.+++||.+.|||+|.+|++++++ .||+.|.+|..
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~-g--~~~n~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~-~Ga~~Vvigt~ 104 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKE-G--RGSNLELIKEIAKETGIPIQVGGGIRSIEDAERLLD-AGADRVVIGTE 104 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCC-T--HHHHHHHHHHHHHHSSSEEEEESSE-SHHHHHHHHH-TT-SEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCccc-C--chhHHHHHHHHHhcCCccEEEeCccCcHHHHHHHHH-hCCCEEEeChH
Confidence 4688999999999999999987654421 1 256899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++..
T Consensus 105 ~~~~~~~l~~~~~ 117 (229)
T PF00977_consen 105 ALEDPELLEELAE 117 (229)
T ss_dssp HHHCCHHHHHHHH
T ss_pred HhhchhHHHHHHH
Confidence 9999999887654
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.3e-07 Score=84.58 Aligned_cols=76 Identities=22% Similarity=0.292 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
-++.++++.+++.|+..|.+....++. ...++|.+.++.+++.+++|||++||+.+++|+.++++.+|+|+++.|.
T Consensus 438 ~~~~~~~~~~~~~Gageil~t~id~DG---t~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~ 513 (538)
T PLN02617 438 IGAYELAKAVEELGAGEILLNCIDCDG---QGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAG 513 (538)
T ss_pred CCHHHHHHHHHhcCCCEEEEeeccccc---cccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEe
Confidence 368899999999999999998887764 3346799999999999999999999999999999999988999999883
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=78.14 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+++.+.++.+.+.|+.++|+..-+..-. .++.+.+.++++.+.+++||-..|||+|.++++.+++ .|++.|.+|..
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~---g~~~n~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~-~G~~rViiGt~ 106 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKA---GGPRNLEAIKEILEATDVPVQVGGGIRSLEDVEALLD-AGVARVIIGTA 106 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeecccccc---CCcccHHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHH-CCCCEEEEecc
Confidence 4789999999999999999988765531 2366889999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++-.
T Consensus 107 av~~p~~v~~~~~ 119 (241)
T COG0106 107 AVKNPDLVKELCE 119 (241)
T ss_pred eecCHHHHHHHHH
Confidence 9999999987754
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=8.2e-07 Score=74.85 Aligned_cols=104 Identities=25% Similarity=0.489 Sum_probs=72.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec--------------------------
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------------------------- 54 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------------------------- 54 (230)
|.||..+.+|+.++ .+||..|.|+|.- --++.|+..|+|+|.=+-
T Consensus 63 MaDp~~i~eim~aV----sIPVMAKvRIGH~-----~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarn 133 (296)
T COG0214 63 MADPKMIEEIMDAV----SIPVMAKVRIGHF-----VEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARN 133 (296)
T ss_pred cCCHHHHHHHHHhc----ccceeeeeecchh-----HHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCc
Confidence 78898877777665 8999999999853 226778888888873210
Q ss_pred ---------------CCCCCcCCC---------------------------------CCcccHHHHHHHHhhCCccEE--
Q 026945 55 ---------------RTRDEKDGK---------------------------------KFRADWNAIKAVKNALRIPVL-- 84 (230)
Q Consensus 55 ---------------rt~~~~~~~---------------------------------~~~~~~~~i~~i~~~~~ipvi-- 84 (230)
||..+. ++ .-.+.++.+.++++.-.+||+
T Consensus 134 LgEAlRRI~EGAaMIRTKGEa-GTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnF 212 (296)
T COG0214 134 LGEALRRISEGAAMIRTKGEA-GTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNF 212 (296)
T ss_pred HHHHHHHHhhhHHHHhcCCCC-CCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEee
Confidence 111100 00 002335566666666567875
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.|||-||.|+.-+++ .|||||.+|.|+..
T Consensus 213 AAGGvATPADAALMM~-LGadGVFVGSGIFK 242 (296)
T COG0214 213 AAGGVATPADAALMMQ-LGADGVFVGSGIFK 242 (296)
T ss_pred cccCcCChhHHHHHHH-hCCCeEEecccccC
Confidence 8899999999998775 89999999998765
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-07 Score=78.76 Aligned_cols=79 Identities=20% Similarity=0.213 Sum_probs=70.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.|+.+++.|+++|||..- + .+ +.+.|+++.+.+++||...|||++ ++++++++ .||+.|.+|..++.
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL------g--~~-n~~~i~~i~~~~~~~v~vGGGIr~-e~v~~~l~-aGa~rVvIGS~av~ 109 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML------G--PN-NDDAAKEALHAYPGGLQVGGGIND-TNAQEWLD-EGASHVIVTSWLFT 109 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC------C--CC-cHHHHHHHHHhCCCCEEEeCCcCH-HHHHHHHH-cCCCEEEECcHHHh
Confidence 89999999999999999876 1 14 899999999999999999999997 99999997 89999999999999
Q ss_pred C----Cccccchhh
Q 026945 116 N----PALFAGFRT 125 (230)
Q Consensus 116 n----P~lf~~~~~ 125 (230)
| |.++.++..
T Consensus 110 ~~~i~~~~~~~i~~ 123 (253)
T TIGR02129 110 KGKFDLKRLKEIVS 123 (253)
T ss_pred CCCCCHHHHHHHHH
Confidence 8 667766543
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-07 Score=78.69 Aligned_cols=84 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++.++|+.+++.|++++||..-.. + .+.+.+.++++++ +++||-..|||++ ++++++|+ .||+-|++|..
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg----g--~~~n~~~i~~i~~-~~~~vqvGGGIR~-e~i~~~l~-~Ga~rViigT~ 113 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA----D--DASLAAALEALRA-YPGGLQVGGGVNS-ENAMSYLD-AGASHVIVTSY 113 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC----C--CcccHHHHHHHHh-CCCCEEEeCCccH-HHHHHHHH-cCCCEEEEchH
Confidence 4689999999999999999987644 1 2457899999999 8999999999996 99999997 89999999999
Q ss_pred hhhC----Cccccchhh
Q 026945 113 LLEN----PALFAGFRT 125 (230)
Q Consensus 113 ~l~n----P~lf~~~~~ 125 (230)
++.| |.++.++..
T Consensus 114 Av~~~~~~p~~v~~~~~ 130 (262)
T PLN02446 114 VFRDGQIDLERLKDLVR 130 (262)
T ss_pred HHhCCCCCHHHHHHHHH
Confidence 9999 998877643
|
|
| >cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=75.93 Aligned_cols=98 Identities=9% Similarity=0.139 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+++...++++++++.+ ++++.++.+.+|+.+++.++++.+++.|+.+|. +. . .+.+|+.++++++.+++
T Consensus 160 ~~~~d~~~v~~lr~~~g~~~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE-------eP--~-~~~d~~~~~~L~~~~~i 229 (316)
T cd03319 160 DLEDDIERIRAIREAAPDARLRVDANQGWTPEEAVELLRELAELGVELIE-------QP--V-PAGDDDGLAYLRDKSPL 229 (316)
T ss_pred ChhhHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE-------CC--C-CCCCHHHHHHHHhcCCC
Confidence 4566778899998877 488999999999999999999999999999983 31 2 24689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++++.+.+++++.++++..++|.|.+-
T Consensus 230 pIa~~E~~~~~~~~~~~~~~~~~d~v~~~ 258 (316)
T cd03319 230 PIMADESCFSAADAARLAGGGAYDGINIK 258 (316)
T ss_pred CEEEeCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 99999999999999999998899999773
|
The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=79.59 Aligned_cols=107 Identities=22% Similarity=0.230 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC------cCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------KDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~------~~~~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++.+ +.+|.++-= .+.+-++.+.++|+|.|.+ |-+... ..+ .+.+++..+..+
T Consensus 177 ~~~~~~~~v~~ik~~~p~~~vi~g~V------~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~~~g-~g~p~ltai~~v 248 (404)
T PRK06843 177 HSTRIIELVKKIKTKYPNLDLIAGNI------VTKEAALDLISVGADCLKV-GIGPGSICTTRIVAG-VGVPQITAICDV 248 (404)
T ss_pred CChhHHHHHHHHHhhCCCCcEEEEec------CCHHHHHHHHHcCCCEEEE-CCCCCcCCcceeecC-CCCChHHHHHHH
Confidence 3466778888888776 566666432 1456788889999999987 422210 011 234566666444
Q ss_pred H---hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 76 K---NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 76 ~---~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+ +..++|||+-|||+++.|+.++|. .|||+||+|+.+.+-..
T Consensus 249 ~~~~~~~~vpVIAdGGI~~~~Di~KALa-lGA~aVmvGs~~agt~E 293 (404)
T PRK06843 249 YEVCKNTNICIIADGGIRFSGDVVKAIA-AGADSVMIGNLFAGTKE 293 (404)
T ss_pred HHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEcceeeeeec
Confidence 4 456899999999999999999997 89999999998887443
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-07 Score=75.91 Aligned_cols=86 Identities=19% Similarity=0.224 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+....||...|||+|.++++++++ .||+-|.+|..+
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~--~--~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~-~Ga~kvvigt~a 105 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAE--G--VGNNEMYIKEISKIGFDWIQVGGGIRDIEKAKRLLS-LDVNALVFSTIV 105 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcC--C--CcchHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHH-CCCCEEEECchh
Confidence 68899999999999999998876553 1 255789999998854459999999999999999997 899999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||.+++++.
T Consensus 106 ~~~p~~~~~~~ 116 (232)
T PRK13586 106 FTNFNLFHDIV 116 (232)
T ss_pred hCCHHHHHHHH
Confidence 99999988764
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=82.04 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--cCCC--CCcc----cHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--KDGK--KFRA----DWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--~~~~--~~~~----~~~~i~ 73 (230)
+++.+.++++.+++.. ++||.+- . --+.+-++.|.++|++.|-|....... ...+ .|.+ .++..+
T Consensus 249 ~~~~~~~~i~~i~~~~~~~~vi~g----~--~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~ 322 (475)
T TIGR01303 249 HQVKMISAIKAVRALDLGVPIVAG----N--VVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAA 322 (475)
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEe----c--cCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHH
Confidence 5678899999999875 7899882 1 224566888889999999976542110 0011 1222 333333
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..++ .++|||+.|||+++.|+.++|. .|||+||+|+-+-+-
T Consensus 323 ~~~~-~~~~viadGgi~~~~di~kala-~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 323 EARK-LGGHVWADGGVRHPRDVALALA-AGASNVMVGSWFAGT 363 (475)
T ss_pred HHHH-cCCcEEEeCCCCCHHHHHHHHH-cCCCEEeechhhccc
Confidence 3344 3899999999999999999997 899999999977654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-07 Score=75.41 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.+++|+.+.+.|++.++|-.-.... + .+.+.+.++++.+.+.+||.+.|||+|.+|+++++. .||+-|.+|..
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~~~--~--~~~n~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~-~Ga~~viigt~ 109 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDAIM--G--RGDNDEAIRELAAAWPLGLWVDGGIRSLENAQEWLK-RGASRVIVGTE 109 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcccc--C--CCccHHHHHHHHHhCCCCEEEecCcCCHHHHHHHHH-cCCCeEEEcce
Confidence 368899999999999999999887652 2 267899999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.| .++.++-.
T Consensus 110 ~~~~-~~~~~~~~ 121 (233)
T cd04723 110 TLPS-DDDEDRLA 121 (233)
T ss_pred eccc-hHHHHHHH
Confidence 9999 87776543
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-07 Score=84.54 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-----------HHHHHHHHh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 101 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-----------~da~~~l~~ 101 (230)
.+.+++|+.+.+.|+|.|++-.-+...........+++.|+++++.+.+|+.+.|||+|. +++.++|+
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~- 345 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFR- 345 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHH-
Confidence 468999999999999999999887642111112346899999999999999999999997 66899997
Q ss_pred hCCcEEEEehhhhhCC
Q 026945 102 TGCEGVLSAESLLENP 117 (230)
Q Consensus 102 ~gadgVmigR~~l~nP 117 (230)
.|||-|.||..++.||
T Consensus 346 ~GadkV~i~s~Av~~~ 361 (538)
T PLN02617 346 SGADKISIGSDAVYAA 361 (538)
T ss_pred cCCCEEEEChHHHhCh
Confidence 8999999999999975
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.9e-06 Score=76.00 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-c--ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-R--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~--~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+.+.++.+++.|+|.|.+-|...-. ..+ . .-+..+.++++.+++|||+.|||.+.+++..+|. .|||||++|.
T Consensus 145 s~~~A~~a~~~G~D~iv~qG~eAGG---H~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~iaaal~-lGA~gV~~GT 220 (330)
T PF03060_consen 145 SVREARKAAKAGADAIVAQGPEAGG---HRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIAAALA-LGADGVQMGT 220 (330)
T ss_dssp SHHHHHHHHHTT-SEEEEE-TTSSE---E---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHHHHHH-CT-SEEEESH
T ss_pred CHHHHHHhhhcCCCEEEEeccccCC---CCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHHHHHH-cCCCEeecCC
Confidence 3566888999999999998865432 222 2 2478889999999999999999999999999997 7999999999
Q ss_pred hhhhCCcc
Q 026945 112 SLLENPAL 119 (230)
Q Consensus 112 ~~l~nP~l 119 (230)
.++.-+.-
T Consensus 221 rFl~t~Es 228 (330)
T PF03060_consen 221 RFLATEES 228 (330)
T ss_dssp HHHTSTTS
T ss_pred eEEecccc
Confidence 99987664
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=75.10 Aligned_cols=86 Identities=20% Similarity=0.138 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..+.++.+++.|+..++|..-.... + .+.+.+.++++.+.+++||...|||+|.++++.+++ .|||-|++|..+
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g--~~~n~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~-~Ga~~vvigT~a 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--G--GGNNEMMLEEVVKLLVVVEELSGGRRDDSSLRAALT-GGRARVNGGTAA 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--C--CcchHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHH-cCCCEEEECchh
Confidence 56788888999999999998765442 1 256889999999999999999999999999999997 799999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||+++.++.
T Consensus 107 ~~~p~~~~~~~ 117 (243)
T TIGR01919 107 LENPWWAAAVI 117 (243)
T ss_pred hCCHHHHHHHH
Confidence 99999887764
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.1e-06 Score=79.42 Aligned_cols=108 Identities=19% Similarity=0.187 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhcC-CceEEE-EECCCCChHHHHHHHHHHHHcCCCEEEEecCCC----CCcCCCCCcccHHHHHHHHh-
Q 026945 5 PLVKSLVEKLALNL-NVPVSC-KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR----DEKDGKKFRADWNAIKAVKN- 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsv-KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~----~~~~~~~~~~~~~~i~~i~~- 77 (230)
..+.++++.+++.. +++|.+ -+ .+.+-++.+.++|+|.|-|--.+. ...+.-.+.+++..+.++++
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~agnv-------~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~ 325 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAGNV-------VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAA 325 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEeecc-------CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchhHHHHHHHHHHH
Confidence 45667777777765 566655 22 245677888899999998642221 11111123568899988877
Q ss_pred --hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 78 --ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 78 --~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
..++|||+-|||.++.|+.++|. .|||+||+|+.+.+-..-.
T Consensus 326 ~~~~~~~via~ggi~~~~~~~~al~-~ga~~v~~g~~~ag~~Esp 369 (479)
T PRK07807 326 ARELGAHVWADGGVRHPRDVALALA-AGASNVMIGSWFAGTYESP 369 (479)
T ss_pred HHhcCCcEEecCCCCCHHHHHHHHH-cCCCeeeccHhhccCccCC
Confidence 46899999999999999999998 8999999999988765543
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.6e-06 Score=79.20 Aligned_cols=104 Identities=23% Similarity=0.238 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC-----CCCcCCCCCcccHHHHHHHHhh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-----RDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt-----~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
..+.+.++.+++.. ++||.++-=. +.+-++.+.++|++.|.|.... ..+.. ..|.++++.+.++++.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v~------t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~-~~g~p~~~~~~~~~~~ 326 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNVA------TAEAARALIEAGADAVKVGIGPGSICTTRIVA-GVGVPQITAIADAAEA 326 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEeccC------CHHHHHHHHHcCCCEEEECCCCCccccceeec-CCCcCHHHHHHHHHHH
Confidence 45667778888776 7888774321 3456788889999999873211 01111 1245677888777664
Q ss_pred ---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 79 ---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 79 ---~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.++|||+.|||+++.|+.+++. .|||.||+|..+-+-
T Consensus 327 ~~~~~~~viadGGi~~~~di~kAla-~GA~~v~~G~~~a~~ 366 (486)
T PRK05567 327 AKKYGIPVIADGGIRYSGDIAKALA-AGASAVMLGSMLAGT 366 (486)
T ss_pred hccCCCeEEEcCCCCCHHHHHHHHH-hCCCEEEECcccccc
Confidence 4799999999999999999998 899999999866554
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-06 Score=71.14 Aligned_cols=105 Identities=17% Similarity=0.247 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+++.+.++++..++ .+..+.|-+. +.++ ++.+.++|++.|.+|+|+... + ..+.+...++.+.++
T Consensus 145 ~~~~l~~li~~a~~-lGl~~lvevh---~~~E----~~~A~~~gadiIgin~rdl~~---~--~~d~~~~~~l~~~~p~~ 211 (260)
T PRK00278 145 DDEQLKELLDYAHS-LGLDVLVEVH---DEEE----LERALKLGAPLIGINNRNLKT---F--EVDLETTERLAPLIPSD 211 (260)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC---CHHH----HHHHHHcCCCEEEECCCCccc---c--cCCHHHHHHHHHhCCCC
Confidence 34567777777755 3666655554 2222 245668899999999987642 1 456788888877663
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+|+|+-|||.|++++.++++ .|+|+|.+|++++..++.-.
T Consensus 212 ~~vIaegGI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp~~ 251 (260)
T PRK00278 212 RLVVSESGIFTPEDLKRLAK-AGADAVLVGESLMRADDPGA 251 (260)
T ss_pred CEEEEEeCCCCHHHHHHHHH-cCCCEEEECHHHcCCCCHHH
Confidence 69999999999999999997 79999999999998777533
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=72.38 Aligned_cols=84 Identities=21% Similarity=0.356 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.+....+|...+..|...+-+- .+ +. ..+.+.++++++.+ ++|++..|||+|+++++++++ .|||+|.+
T Consensus 133 ~~e~~~ayA~aae~~g~~ivyLe-~S-----G~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVV 203 (219)
T cd02812 133 KPEDAAAYALAAEYLGMPIVYLE-YS-----GA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAE-AGADTIVV 203 (219)
T ss_pred CHHHHHHHHHHHHHcCCeEEEeC-CC-----CC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEE
Confidence 45678889999999996666654 11 11 25779999999998 999999999999999999986 89999999
Q ss_pred ehhhhhCCccccch
Q 026945 110 AESLLENPALFAGF 123 (230)
Q Consensus 110 gR~~l~nP~lf~~~ 123 (230)
|..+..||.++.++
T Consensus 204 Gsai~~~p~~~~~~ 217 (219)
T cd02812 204 GNIVEEDPNAALET 217 (219)
T ss_pred CchhhCCHHHHHHH
Confidence 99999999887753
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-06 Score=79.20 Aligned_cols=104 Identities=18% Similarity=0.234 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcC-CceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCc-CCCCCcccHHHHHHHH
Q 026945 6 LVKSLVEKLALNL-NVPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEK-DGKKFRADWNAIKAVK 76 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~-~~~~~~~~~~~i~~i~ 76 (230)
.+.++++.+++.. +.+|.++ +- +.+-++.+.++|+|.|.|. +. |+... .+.+....+..+.++.
T Consensus 275 ~~~~~i~~ik~~~p~~~vi~g~v~-------t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~ 347 (505)
T PLN02274 275 YQLEMIKYIKKTYPELDVIGGNVV-------TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIA 347 (505)
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-------CHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHH
Confidence 3457788888766 4666554 22 3456888889999999774 32 21100 1111223455677788
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+..++|||+-|||+++.|+.++|. .||++||+|..+..-.
T Consensus 348 ~~~~vpVIadGGI~~~~di~kAla-~GA~~V~vGs~~~~t~ 387 (505)
T PLN02274 348 AQHGVPVIADGGISNSGHIVKALT-LGASTVMMGSFLAGTT 387 (505)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEchhhcccc
Confidence 888999999999999999999997 8999999999887643
|
|
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-06 Score=71.61 Aligned_cols=128 Identities=25% Similarity=0.295 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
||.+-.+=++-+++.++.||.+|==+. .+=|+...++|++.|.|+.-..-|.. ..++..+.+.++.+++ +
T Consensus 207 d~Sl~W~Di~wLr~~T~LPIvvKGilt------~eDA~~Ave~G~~GIIVSNHGgRQlD--~vpAtI~~L~Evv~aV~~r 278 (363)
T KOG0538|consen 207 DPSLSWKDIKWLRSITKLPIVVKGVLT------GEDARKAVEAGVAGIIVSNHGGRQLD--YVPATIEALPEVVKAVEGR 278 (363)
T ss_pred CCCCChhhhHHHHhcCcCCeEEEeecc------cHHHHHHHHhCCceEEEeCCCccccC--cccchHHHHHHHHHHhcCc
Confidence 444455567778888899999995431 13367888999999999765444432 2478889999998887 4
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC 154 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~ 154 (230)
+||..-|||++..|+.++|. .||.+|.+||..+ +.-.-.+ + ......+++++.-++++
T Consensus 279 i~V~lDGGVR~G~DVlKALA-LGAk~VfiGRP~v-----~gLA~~G------e----~GV~~vl~iL~~efe~t 336 (363)
T KOG0538|consen 279 IPVFLDGGVRRGTDVLKALA-LGAKGVFIGRPIV-----WGLAAKG------E----AGVKKVLDILRDEFELT 336 (363)
T ss_pred eEEEEecCcccchHHHHHHh-cccceEEecCchh-----eeecccc------c----hhHHHHHHHHHHHHHHH
Confidence 99999999999999999998 8999999999544 4432221 1 34456777777666654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=8e-06 Score=76.18 Aligned_cols=110 Identities=25% Similarity=0.245 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~~~~~~~~~~~~i~~i~ 76 (230)
-+.+.+.++.+++.. ++||.++-=. +.+-++.+.++|+|+|-|. +. |+.. .+ .|.+....+.+++
T Consensus 249 ~~~~~~~i~~i~~~~~~~~vi~G~v~------t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~-~~-~g~p~~~~i~~~~ 320 (450)
T TIGR01302 249 SIYVIDSIKEIKKTYPDLDIIAGNVA------TAEQAKALIDAGADGLRVGIGPGSICTTRIV-AG-VGVPQITAVYDVA 320 (450)
T ss_pred HhHHHHHHHHHHHhCCCCCEEEEeCC------CHHHHHHHHHhCCCEEEECCCCCcCCcccee-cC-CCccHHHHHHHHH
Confidence 356778888888874 7888885432 3456788889999999764 21 2211 11 2334566666664
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+ ..++|||+.|||+++.|+.++|. .||+.||+|+.+.+-.+...+
T Consensus 321 ~~~~~~~vpviadGGi~~~~di~kAla-~GA~~V~~G~~~a~~~e~pg~ 368 (450)
T TIGR01302 321 EYAAQSGIPVIADGGIRYSGDIVKALA-AGADAVMLGSLLAGTTESPGE 368 (450)
T ss_pred HHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhcCCcCCCc
Confidence 4 36899999999999999999997 899999999988776665543
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=74.79 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=83.0
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC------------cCCCCCcc----cHHHHHHHHhhC--C
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE------------KDGKKFRA----DWNAIKAVKNAL--R 80 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~------------~~~~~~~~----~~~~i~~i~~~~--~ 80 (230)
..|+.+|+-..-...+..+++..+.+.++|.+++++-|.+- ..+.+|++ ..+.++++...+ .
T Consensus 252 ~~pvl~kiapDL~~~el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~ 331 (398)
T KOG1436|consen 252 KPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGK 331 (398)
T ss_pred CCceEEEeccchhHHHHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCCccchhHHHHHHHHHHhccCC
Confidence 46999999865555678899999999999999998754321 12333333 356677776665 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
||||++|||.|..|+.+.+. +||..|.++.++.. .|-+|.+++.
T Consensus 332 IpiIG~GGV~SG~DA~Ekir-aGASlvQlyTal~yeGp~i~~kIk~ 376 (398)
T KOG1436|consen 332 IPIIGCGGVSSGKDAYEKIR-AGASLVQLYTALVYEGPAIIEKIKR 376 (398)
T ss_pred CceEeecCccccHhHHHHHh-cCchHHHHHHHHhhcCchhHHHHHH
Confidence 99999999999999999997 89999999999876 5889988764
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=64.92 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
++.+.+.++++.+.+ ++|+.++.+.+. +.+...++++.+.+.|++.|..+.... .+..+++.++++++..
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~------~~~~~~~~~~~i~~~~ 169 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFG------GGGATVEDVKLMKEAV 169 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC------CCCCCHHHHHHHHHhc
Confidence 577888888888874 899999998654 345667777888899999998765322 1346889999998887
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++.||+.+++.+..++. .||+|+++|
T Consensus 170 ~~~~~v~~~gg~~~~~~~~~~~~-~Ga~g~~~g 201 (201)
T cd00945 170 GGRVGVKAAGGIKTLEDALAAIE-AGADGIGTS 201 (201)
T ss_pred ccCCcEEEECCCCCHHHHHHHHH-hccceeecC
Confidence 679999999999999999997 699999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.2e-06 Score=67.72 Aligned_cols=80 Identities=18% Similarity=0.264 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+-+..+.+.|+|+|.++....... .+...+..++.++++++..++||++-||| +.+++.++++ .|+|+|++|++++.
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~-~Ga~~i~~g~~i~~ 183 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLA-AGADGVAVISAITG 183 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhc
Confidence 345667778999999987643321 11113567899999998889999999999 4789988886 89999999999887
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
++.
T Consensus 184 ~~~ 186 (196)
T cd00564 184 ADD 186 (196)
T ss_pred CCC
Confidence 655
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=71.38 Aligned_cols=53 Identities=25% Similarity=0.492 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 69 WNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
++.+++.++.-.+||+ +.|||.||.|+.-+++ .|||||.+|.|.+..++=++.
T Consensus 196 ~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQ-LGCdGVFVGSgiFks~dP~k~ 250 (296)
T KOG1606|consen 196 YDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQ-LGCDGVFVGSGIFKSGDPVKR 250 (296)
T ss_pred HHHHHHHHHcCCCceEEecccCcCChhHHHHHHH-cCCCeEEeccccccCCCHHHH
Confidence 4555555665568885 8999999999988775 899999999998876665554
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=8e-06 Score=69.59 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC------CC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF------PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g------~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
||+++.++.+...+ +-+++-.|-| |. .....++++.+++. +..|.+....+... .. ++|
T Consensus 107 ~~~~l~~~~~~~g~---ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~-~~~ii~t~i~~dGt--~~-G~d----- 174 (228)
T PRK04128 107 DLEFLEKVTSEFEG---ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNY-VNRFIYTSIERDGT--LT-GIE----- 174 (228)
T ss_pred CHHHHHHHHHHcCC---EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHH-hCEEEEEeccchhc--cc-CHH-----
Confidence 68888888887732 4455544432 32 22467888889888 89999998777643 22 334
Q ss_pred HHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 74 AVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 74 ~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+.+. .++||+++|||+|.+|+.++.+ .|++||++|++++..
T Consensus 175 ~l~~~~~~~pviasGGv~~~~Dl~~l~~-~g~~gvivg~al~~g 217 (228)
T PRK04128 175 EIERFWGDEEFIYAGGVSSAEDVKKLAE-IGFSGVIIGKALYEG 217 (228)
T ss_pred HHHHhcCCCCEEEECCCCCHHHHHHHHH-CCCCEEEEEhhhhcC
Confidence 22232 5799999999999999999887 799999999998765
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=8e-06 Score=77.01 Aligned_cols=104 Identities=24% Similarity=0.263 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cC----CCCCcCCCCCcccHHHHHHHH-
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GR----TRDEKDGKKFRADWNAIKAVK- 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~r----t~~~~~~~~~~~~~~~i~~i~- 76 (230)
..+.+.++.+++.. ++||.++-= -+.+-++.+.++|+|+|.+. +. |+... ..|.+....+..++
T Consensus 267 ~~~~~~i~~ik~~~~~~~v~aG~V------~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~--~~g~p~~~ai~~~~~ 338 (495)
T PTZ00314 267 IYQIDMIKKLKSNYPHVDIIAGNV------VTADQAKNLIDAGADGLRIGMGSGSICITQEVC--AVGRPQASAVYHVAR 338 (495)
T ss_pred hHHHHHHHHHHhhCCCceEEECCc------CCHHHHHHHHHcCCCEEEECCcCCcccccchhc--cCCCChHHHHHHHHH
Confidence 44567888888875 577777321 13456788889999999863 21 11111 12334555555444
Q ss_pred --hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 --NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 --~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+..++|||+.|||+++.|+.+++. .|||+||+|+.+.+--
T Consensus 339 ~~~~~~v~vIadGGi~~~~di~kAla-~GA~~Vm~G~~~a~~~ 380 (495)
T PTZ00314 339 YARERGVPCIADGGIKNSGDICKALA-LGADCVMLGSLLAGTE 380 (495)
T ss_pred HHhhcCCeEEecCCCCCHHHHHHHHH-cCCCEEEECchhcccc
Confidence 446899999999999999999997 8999999999876643
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.1e-06 Score=74.15 Aligned_cols=95 Identities=21% Similarity=0.204 Sum_probs=61.3
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-CcCCC--CCcccHHHHHHHHh-------hC---CccE
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDGK--KFRADWNAIKAVKN-------AL---RIPV 83 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-~~~~~--~~~~~~~~i~~i~~-------~~---~ipv 83 (230)
..++||.+.-- .+ .+.++.+.++|+|.|.+ ++... ..... .+.+....+..+.. .. .+||
T Consensus 186 ~~~IPVI~G~V--~t----~e~A~~~~~aGaDgV~~-G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpV 258 (369)
T TIGR01304 186 ELDVPVIAGGV--ND----YTTALHLMRTGAAGVIV-GPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHV 258 (369)
T ss_pred HCCCCEEEeCC--CC----HHHHHHHHHcCCCEEEE-CCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceE
Confidence 34789876211 12 34456666799999984 32211 10011 11233445554432 23 3999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|+.|||.+..|+.+++. .|||+||+|+.++.--+.
T Consensus 259 IAdGGI~tg~di~kAlA-lGAdaV~iGt~~a~a~Ea 293 (369)
T TIGR01304 259 IADGGIETSGDLVKAIA-CGADAVVLGSPLARAAEA 293 (369)
T ss_pred EEeCCCCCHHHHHHHHH-cCCCEeeeHHHHHhhhcC
Confidence 99999999999999997 899999999999875553
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-05 Score=67.67 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecC-------------------------
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGR------------------------- 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~r------------------------- 55 (230)
+.+.+.++++++++. .++|+..=+-..+ -.-...+|++.+.++|++.+.+|.-
T Consensus 70 ~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 70 TPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECC
Confidence 356778899999876 6888652111111 0012356777777777777777631
Q ss_pred -CCCCc-----------------CCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 56 -TRDEK-----------------DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 56 -t~~~~-----------------~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|...+ .+++| +...+.++++++..+.||++.|||+|++++.++.+ .|||||.+|+
T Consensus 150 ~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~pi~vgfGI~~~e~~~~~~~-~GADgvVvGS 228 (256)
T TIGR00262 150 NADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAKPVLVGFGISKPEQVKQAID-AGADGVIVGS 228 (256)
T ss_pred CCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCCCEEEeCCCCCHHHHHHHHH-cCCCEEEECH
Confidence 10000 12222 12467889999988999999999999999999886 8999999999
Q ss_pred hhh
Q 026945 112 SLL 114 (230)
Q Consensus 112 ~~l 114 (230)
+++
T Consensus 229 aiv 231 (256)
T TIGR00262 229 AIV 231 (256)
T ss_pred HHH
Confidence 885
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-05 Score=70.18 Aligned_cols=106 Identities=19% Similarity=0.287 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC----cccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF----RADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~----~~~~~~i~~i~~~~ 79 (230)
++...+.+..+++..++||.++++. .+.++..++++.++++|+++|.+|.--.....+..+ ..-++.++.+++.+
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~ 164 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV 164 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc
Confidence 3555667777777778999999976 455788899999999999999997521111111111 12367889999999
Q ss_pred CccEEEc--CCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLAN--GNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~n--GgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++. +++.+..++.+.+++.|+|+|.+.
T Consensus 165 ~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 165 SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF 197 (334)
T ss_pred CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 9999965 566677888888888999998663
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.8e-05 Score=70.54 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------cCCCCCcCCCCCcccHHHHHHHHh
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------GRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
-+.+.+.++.+++.+.-+..+|=.+. +.+-++.|.++|+|.|-|. ..|+. ..+ .|-+.+..+..+++
T Consensus 134 s~~~i~~ik~ir~~~p~~~viaGNV~-----T~e~a~~Li~aGAD~ikVgiGpGSicttR~-~~G-vg~pqltAv~~~a~ 206 (343)
T TIGR01305 134 SEHFVEFVKLVREAFPEHTIMAGNVV-----TGEMVEELILSGADIVKVGIGPGSVCTTRT-KTG-VGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEeccc-----CHHHHHHHHHcCCCEEEEcccCCCcccCce-eCC-CCcCHHHHHHHHHH
Confidence 34566777778777643444544432 2356778889999999876 22332 222 23356777777766
Q ss_pred hC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 78 AL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 78 ~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.. ++|||+-|||++..|+.++|. .|||+||+|.-+-+
T Consensus 207 aa~~~~v~VIaDGGIr~~gDI~KALA-~GAd~VMlG~llAG 246 (343)
T TIGR01305 207 AAHGLKGHIISDGGCTCPGDVAKAFG-AGADFVMLGGMFAG 246 (343)
T ss_pred HhccCCCeEEEcCCcCchhHHHHHHH-cCCCEEEECHhhhC
Confidence 53 689999999999999999998 89999999944433
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-05 Score=67.51 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.-.++++++++.+ ++++.+..+-+|+.+++.++++.+++.|+++|.- .. .+.+++..+++++.++
T Consensus 111 ~~~~d~~~v~~vr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iEe---------P~-~~~d~~~~~~l~~~~~ 180 (265)
T cd03315 111 DPARDVAVVAALREAVGDDAELRVDANRGWTPKQAIRALRALEDLGLDYVEQ---------PL-PADDLEGRAALARATD 180 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHHHHHHHhcCCCEEEC---------CC-CcccHHHHHHHHhhCC
Confidence 4566778899999877 5788888888899999999999999999999852 11 1357899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+++++.++.++.++++...+|.|++
T Consensus 181 ipia~dE~~~~~~~~~~~i~~~~~d~v~~ 209 (265)
T cd03315 181 TPIMADESAFTPHDAFRELALGAADAVNI 209 (265)
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998788999876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=1e-05 Score=73.55 Aligned_cols=95 Identities=23% Similarity=0.197 Sum_probs=63.1
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC---C--CCcccHHHHHHHHhh-------C---Ccc
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG---K--KFRADWNAIKAVKNA-------L---RIP 82 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~---~--~~~~~~~~i~~i~~~-------~---~ip 82 (230)
.++||.++- + . +.+-++.+.++|+|.|.+ ++....-.. . .+-+....+.++++. . ++|
T Consensus 186 ~~ipVIaG~-V-~----t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vp 258 (368)
T PRK08649 186 LDVPVIVGG-C-V----TYTTALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVH 258 (368)
T ss_pred CCCCEEEeC-C-C----CHHHHHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCe
Confidence 478887622 1 1 245567777899999977 443210000 0 112334445554321 1 599
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
||+.|||++..|+.++|. .|||+||+|+.+..-..-.
T Consensus 259 VIAdGGI~~~~diakAla-lGAd~Vm~Gs~fa~t~Esp 295 (368)
T PRK08649 259 VIADGGIGTSGDIAKAIA-CGADAVMLGSPLARAAEAP 295 (368)
T ss_pred EEEeCCCCCHHHHHHHHH-cCCCeecccchhcccccCC
Confidence 999999999999999997 8999999999988855433
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-06 Score=69.38 Aligned_cols=86 Identities=19% Similarity=0.318 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
..+-+...++.|+|+|.+.+-.........++.-|+.++.+++..++|+++-||| +++.+.++++ +|++||.+-|+++
T Consensus 113 ~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~-~Ga~gVAvvsai~ 190 (211)
T COG0352 113 DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLE-AGADGVAVVSAIT 190 (211)
T ss_pred CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-hCCCeEEehhHhh
Confidence 3466777888999999998865544322235668999999999989999999999 6899999886 9999999999999
Q ss_pred hCCccccc
Q 026945 115 ENPALFAG 122 (230)
Q Consensus 115 ~nP~lf~~ 122 (230)
.+++....
T Consensus 191 ~a~d~~~a 198 (211)
T COG0352 191 SAADPAAA 198 (211)
T ss_pred cCCCHHHH
Confidence 87765543
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.6e-05 Score=66.72 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.++...++...+..|++.|++..-+.. ..+.+.+.++++++.+++|++..|||+|+++++++++ .|||+|.+|
T Consensus 133 ~e~~~~~a~aa~~~G~~~i~Le~~sGa-----~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~-~GAD~VVVG 205 (205)
T TIGR01769 133 PEIAAAYCLAAKYFGMKWVYLEAGSGA-----SYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVL-AGADAIVTG 205 (205)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCC-----CCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHH-cCCCEEEeC
Confidence 467888999999999999999553322 2245789999999999999999999999999999886 789999987
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.6e-05 Score=65.26 Aligned_cols=102 Identities=15% Similarity=0.232 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.+.+-+.++++.+ .|+.+|+=+ ..+.++....++.+.++|+|+|--+.... .+++..+.++.+++.+
T Consensus 104 ~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~------~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 104 DWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFS------TGGATVEDVKLMRETV 176 (221)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHh
Confidence 4666777777777755 467788733 23556778899999999999887543221 2357788888888876
Q ss_pred C--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 80 R--IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 80 ~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+ ++|.++|||+|++++.++++ .||+.+-..+|
T Consensus 177 ~~~~~IKasGGIrt~~~a~~~i~-aGA~riGtS~~ 210 (221)
T PRK00507 177 GPRVGVKASGGIRTLEDALAMIE-AGATRLGTSAG 210 (221)
T ss_pred CCCceEEeeCCcCCHHHHHHHHH-cCcceEccCcH
Confidence 4 89999999999999999997 89998766554
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.4e-05 Score=66.49 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=59.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+....+.|+|+|.+++...... .+..+...++.++++++..+ +||++-||| +.+++.++++ .|+|+|.+|++++.+
T Consensus 117 ~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~-~Ga~gv~~gs~i~~~ 194 (212)
T PRK00043 117 AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLE-AGADGVAVVSAITGA 194 (212)
T ss_pred HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEeHHhhcC
Confidence 4555678999999886543321 11222334899999999887 999999999 6899998887 899999999988765
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
+.
T Consensus 195 ~d 196 (212)
T PRK00043 195 ED 196 (212)
T ss_pred CC
Confidence 44
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=74.13 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecC----CCCCcCCCCCcccHHHHHHHHhh
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGR----TRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~r----t~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.++.+++.++.++.|+---- -+.+-++.+.++|+|+|.| |+. |+.+. -.|.+.+..+.+++++
T Consensus 268 ~~~~~~i~~ir~~~~~~~~V~aGnV----~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~--~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 268 EWQKRTLDWIREKYGDSVKVGAGNV----VDREGFRYLAEAGADFVKVGIGGGSICITREQK--GIGRGQATALIEVAKA 341 (502)
T ss_pred HHHHHHHHHHHHhCCCCceEEeccc----cCHHHHHHHHHcCCCEEEECCCCCcCccccccc--CCCccHHHHHHHHHHH
Confidence 3456777888776654444443211 1345577788899999987 332 33332 1345567777777664
Q ss_pred C-------C--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 79 L-------R--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 79 ~-------~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
. + +|||+-|||++..|+.++|. .|||+||+||.+-+--
T Consensus 342 ~~~~~~~~g~~~~viadgGir~~gdi~KAla-~GA~~vm~G~~~ag~~ 388 (502)
T PRK07107 342 RDEYFEETGVYIPICSDGGIVYDYHMTLALA-MGADFIMLGRYFARFD 388 (502)
T ss_pred HHHHHhhcCCcceEEEcCCCCchhHHHHHHH-cCCCeeeeChhhhccc
Confidence 3 4 89999999999999999998 8999999999887743
|
|
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.1e-06 Score=69.23 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHh-hCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-~gadgVmigR 111 (230)
.+..+.|+.+.+.|++.|+|-.-.... + .+.+.+.++++.+. +|+...|||+|.+|+++++.. .+|+-|.+|.
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~~~--~--~~~n~~~i~~i~~~--~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT 109 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDRIV--G--LGDNFSLLSKLSKR--VELIADCGVRSPEDLETLPFTLEFASRVVVAT 109 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccccc--C--CcchHHHHHHHHhh--CcEEEcCccCCHHHHHHHHhhhccceEEeecC
Confidence 467899999999999999998876642 2 25689999999887 499999999999999998652 3699999999
Q ss_pred hhhhCCccccchh
Q 026945 112 SLLENPALFAGFR 124 (230)
Q Consensus 112 ~~l~nP~lf~~~~ 124 (230)
.++.||.++.++.
T Consensus 110 ~a~~~p~~l~~~~ 122 (221)
T TIGR00734 110 ETLDITELLRECY 122 (221)
T ss_pred hhhCCHHHHHHhh
Confidence 9999999887653
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.1e-05 Score=67.38 Aligned_cols=101 Identities=13% Similarity=0.235 Sum_probs=72.0
Q ss_pred HHHHHHHHhhc---CCceEEEEEC-------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 7 VKSLVEKLALN---LNVPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 7 ~~eiv~~v~~~---~~~pvsvKiR-------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
+.+.+.++.+. .++|+.+=.. ...+.+.....++...+.|+|+|-.+ +. .+.+.++++.
T Consensus 124 ~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~---------~~--~~~~~l~~~~ 192 (267)
T PRK07226 124 MLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN---------YT--GDPESFREVV 192 (267)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC---------CC--CCHHHHHHHH
Confidence 44444444433 4788776321 11223344556788889999999543 22 2568888888
Q ss_pred hhCCccEEEcCCCC--CHHHHHHHHH---hhCCcEEEEehhhhhCCc
Q 026945 77 NALRIPVLANGNVR--HMEDVQKCLE---ETGCEGVLSAESLLENPA 118 (230)
Q Consensus 77 ~~~~ipvi~nGgI~--s~~da~~~l~---~~gadgVmigR~~l~nP~ 118 (230)
+..++||++.|||+ |.+++.+++. +.||+|+.+||.++..|+
T Consensus 193 ~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~ 239 (267)
T PRK07226 193 EGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHED 239 (267)
T ss_pred HhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCC
Confidence 87889999999999 8888887762 489999999999998766
|
|
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=72.01 Aligned_cols=83 Identities=23% Similarity=0.359 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCC--CCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+...++.+++.|+|.|.+++-..-...+. ....-...+.++++.++ ||||+.|||.+.+++..+|. .|||||.+|.
T Consensus 136 ~~~~A~~~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAla-lGA~gVq~GT 214 (336)
T COG2070 136 TVREALKAERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALA-LGADGVQMGT 214 (336)
T ss_pred CHHHHHHHHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHH-hccHHHHhhh
Confidence 46788999999999999988654322111 01223677899999999 99999999999999999998 8999999999
Q ss_pred hhhhCCc
Q 026945 112 SLLENPA 118 (230)
Q Consensus 112 ~~l~nP~ 118 (230)
.++.-..
T Consensus 215 ~Fl~t~E 221 (336)
T COG2070 215 RFLATKE 221 (336)
T ss_pred hhhcccc
Confidence 9988654
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-05 Score=64.62 Aligned_cols=90 Identities=19% Similarity=0.319 Sum_probs=66.1
Q ss_pred cCCceEEEEECC-CC------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 17 NLNVPVSCKIRV-FP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 17 ~~~~pvsvKiR~-g~------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
..++|+.+-... |. +.+.....++...+.|+|+|-+.. +.+.+.++++++.+++||++.||+
T Consensus 120 ~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~-----------~~~~~~~~~i~~~~~~pvv~~GG~ 188 (235)
T cd00958 120 KYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY-----------TGDAESFKEVVEGCPVPVVIAGGP 188 (235)
T ss_pred HcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC-----------CCCHHHHHHHHhcCCCCEEEeCCC
Confidence 357888775543 11 122333347778899999999831 126788999999999999998987
Q ss_pred --CCHHH----HHHHHHhhCCcEEEEehhhhhCCc
Q 026945 90 --RHMED----VQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 90 --~s~~d----a~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|.++ +.++++ .|++||.+||.++..|+
T Consensus 189 ~~~~~~~~l~~~~~~~~-~Ga~gv~vg~~i~~~~d 222 (235)
T cd00958 189 KKDSEEEFLKMVYDAME-AGAAGVAVGRNIFQRPD 222 (235)
T ss_pred CCCCHHHHHHHHHHHHH-cCCcEEEechhhhcCCC
Confidence 67766 566665 89999999999997775
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-06 Score=75.90 Aligned_cols=105 Identities=18% Similarity=0.120 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+|-.+.|-+..+++.+..|+.+|= .. ..+=+..+-+.|++.|.++.....|. .-+.+..+.+.++++.++
T Consensus 202 ~P~i~ked~~~i~~~~~~~lv~kG---V~---~~~D~~~a~~tg~~~I~vsnhggrql--D~g~st~~~L~ei~~av~~~ 273 (360)
T COG1304 202 VPVISKEDGAGISKEWAGPLVLKG---IL---APEDAAGAGGTGADGIEVSNHGGRQL--DWGISTADSLPEIVEAVGDR 273 (360)
T ss_pred CCcccHHHHhHHHHhcCCcHHHhC---CC---CHHHHHhhccCCceEEEEEcCCCccc--cCCCChHHHHHHHHHHhCCC
Confidence 344444445555554444444331 10 11225666788999999976443332 224566788999999886
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||++.|||+|..|+.+++. .|||+|++||.++..
T Consensus 274 ~~vi~dGGiR~G~Dv~KAlA-LGA~~v~igrp~L~~ 308 (360)
T COG1304 274 IEVIADGGIRSGLDVAKALA-LGADAVGIGRPFLYG 308 (360)
T ss_pred eEEEecCCCCCHHHHHHHHH-hCCchhhhhHHHHHH
Confidence 99999999999999999998 899999999976653
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.4e-05 Score=66.39 Aligned_cols=110 Identities=15% Similarity=0.216 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCCh---HHHHHHHHHHHHcCCCEEEEecC------------------------
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGR------------------------ 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~r------------------------ 55 (230)
+.+.+.++++++++..++|+.+ -..++. -...+|++.+.++|++.+.+|.-
T Consensus 75 ~~~~~~~~~~~~r~~~~~p~vl--m~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~ 152 (263)
T CHL00200 75 NLNKILSILSEVNGEIKAPIVI--FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIA 152 (263)
T ss_pred CHHHHHHHHHHHhcCCCCCEEE--EecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 3567788999998777888642 222221 12345666777777777777631
Q ss_pred -C-CCCc-----------------CCCCCcc------cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 56 -T-RDEK-----------------DGKKFRA------DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 56 -t-~~~~-----------------~~~~~~~------~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+ ...+ .+.+|.- --+.++++++.++.||...+||+|++++.++.+ .|||||.+|
T Consensus 153 PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGFGI~~~e~~~~~~~-~GADGvVVG 231 (263)
T CHL00200 153 PTSSKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKG-WNINGIVIG 231 (263)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHh-cCCCEEEEC
Confidence 1 0000 1222221 135678888888999999999999999999775 899999999
Q ss_pred hhhhh
Q 026945 111 ESLLE 115 (230)
Q Consensus 111 R~~l~ 115 (230)
.+++.
T Consensus 232 Salv~ 236 (263)
T CHL00200 232 SACVQ 236 (263)
T ss_pred HHHHH
Confidence 99965
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=66.74 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=62.7
Q ss_pred HHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+....+....+ .|-..+-+-... ++..+.+++.++++++.+ ++|++..|||+|.++++++++ .|||+|++|.
T Consensus 136 ~~aa~~~lA~~~~g~~~vYlE~gs-----~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~-aGAD~VVVGs 209 (223)
T TIGR01768 136 DLAAYAAMAEEMLGMPIIYLEAGS-----GAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAE-AGADTIVTGN 209 (223)
T ss_pred HHHHHHHHHHHHcCCcEEEEEecC-----CCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHH-cCCCEEEECc
Confidence 33333333333 566666554221 122356789999999998 899999999999999999886 7999999999
Q ss_pred hhhhCCccccc
Q 026945 112 SLLENPALFAG 122 (230)
Q Consensus 112 ~~l~nP~lf~~ 122 (230)
.+..||..+.+
T Consensus 210 ~~~~dp~~~~~ 220 (223)
T TIGR01768 210 VIEEDVDKALE 220 (223)
T ss_pred HHhhCHHHHHH
Confidence 99999887664
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.2e-05 Score=63.57 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCEE--EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+....++|+|+| |++|-|.... ....+|++.++++.+ .+.+||+-|.++||+.+.++++ .||++|.+|. +
T Consensus 137 ~ee~l~a~~~G~D~IGTTLsGYT~~~~--~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~-~Ga~aVvVGs-A 211 (229)
T COG3010 137 FEEGLNAHKLGFDIIGTTLSGYTGYTE--KPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIE-IGADAVVVGS-A 211 (229)
T ss_pred HHHHHHHHHcCCcEEecccccccCCCC--CCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHH-hCCeEEEECc-c
Confidence 344556678999998 7778776432 233679999999988 7999999999999999999997 8999999995 6
Q ss_pred hhCCcc
Q 026945 114 LENPAL 119 (230)
Q Consensus 114 l~nP~l 119 (230)
+.+|.-
T Consensus 212 ITRp~~ 217 (229)
T COG3010 212 ITRPEE 217 (229)
T ss_pred cCCHHH
Confidence 666653
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.08 E-value=7e-05 Score=64.79 Aligned_cols=100 Identities=14% Similarity=0.236 Sum_probs=70.4
Q ss_pred HHHHHHhhc---CCceEEEEEC-----CCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 9 SLVEKLALN---LNVPVSCKIR-----VFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 9 eiv~~v~~~---~~~pvsvKiR-----~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+.+.++++. .++|+.+..- ++. +.+.....++...++|+|+|.+. + +.+.+.++++.+..
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---------~--~~~~~~l~~~~~~~ 191 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---------Y--TGDIDSFRDVVKGC 191 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc---------C--CCCHHHHHHHHHhC
Confidence 455555543 4788877432 221 22333444688889999999963 1 13678899999888
Q ss_pred CccEEEcCCCC--CHHHHHHHHH---hhCCcEEEEehhhhhCCcc
Q 026945 80 RIPVLANGNVR--HMEDVQKCLE---ETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 ~ipvi~nGgI~--s~~da~~~l~---~~gadgVmigR~~l~nP~l 119 (230)
++||++.|||+ |.+++.+.++ +.|++|+.+||.++..++.
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp 236 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDP 236 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCH
Confidence 99999999999 6666554442 3899999999999977663
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0001 Score=61.32 Aligned_cols=103 Identities=16% Similarity=0.314 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhcCCceEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccE
Q 026945 6 LVKSLVEKLALNLNVPVSCKI-RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKi-R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipv 83 (230)
.+.++++.+++ .++++.+-+ .. ....+-++.+.+.|++++.+++.+..+.. ++..++.++++++.++ .++
T Consensus 90 ~~~~~i~~~~~-~g~~~~~~~~~~----~t~~~~~~~~~~~g~d~v~~~pg~~~~~~---~~~~~~~i~~l~~~~~~~~i 161 (206)
T TIGR03128 90 TIKGAVKAAKK-HGKEVQVDLINV----KDKVKRAKELKELGADYIGVHTGLDEQAK---GQNPFEDLQTILKLVKEARV 161 (206)
T ss_pred HHHHHHHHHHH-cCCEEEEEecCC----CChHHHHHHHHHcCCCEEEEcCCcCcccC---CCCCHHHHHHHHHhcCCCcE
Confidence 45677777765 478888764 32 22445566667789999999865444321 2345678888887765 455
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+.||| +++.+.++++ .|+|+|.+||+++..+.
T Consensus 162 ~v~GGI-~~~n~~~~~~-~Ga~~v~vGsai~~~~d 194 (206)
T TIGR03128 162 AVAGGI-NLDTIPDVIK-LGPDIVIVGGAITKAAD 194 (206)
T ss_pred EEECCc-CHHHHHHHHH-cCCCEEEEeehhcCCCC
Confidence 568999 7899999886 89999999999876554
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.3e-05 Score=69.30 Aligned_cols=103 Identities=18% Similarity=0.312 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
+.++++.+++ .++++.+-+ ++. ....+.++.+.+.|+++|.++.....+. .++..++.++++++.+++||++.
T Consensus 96 ~~~~i~~a~~-~G~~~~~g~-~s~--~t~~e~~~~a~~~GaD~I~~~pg~~~~~---~~~~~~~~l~~l~~~~~iPI~a~ 168 (430)
T PRK07028 96 IEDAVRAARK-YGVRLMADL-INV--PDPVKRAVELEELGVDYINVHVGIDQQM---LGKDPLELLKEVSEEVSIPIAVA 168 (430)
T ss_pred HHHHHHHHHH-cCCEEEEEe-cCC--CCHHHHHHHHHhcCCCEEEEEeccchhh---cCCChHHHHHHHHhhCCCcEEEE
Confidence 4566666665 466666542 111 2234557888889999999886432221 12334688999998889999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||| +.+.+.++++ .|+|+|.+||+++..+.
T Consensus 169 GGI-~~~n~~~~l~-aGAdgv~vGsaI~~~~d 198 (430)
T PRK07028 169 GGL-DAETAAKAVA-AGADIVIVGGNIIKSAD 198 (430)
T ss_pred CCC-CHHHHHHHHH-cCCCEEEEChHHcCCCC
Confidence 999 6889988887 89999999999987654
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.2e-05 Score=64.88 Aligned_cols=104 Identities=15% Similarity=0.347 Sum_probs=74.1
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
++++++++. +++|+.|-+=+ .+...+++.+.++|++.|++|.-....-
T Consensus 47 ~~i~~i~~~~~~~~~dvHLMv----~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i 122 (220)
T PRK08883 47 PICKALRDYGITAPIDVHLMV----KPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHL 122 (220)
T ss_pred HHHHHHHHhCCCCCEEEEecc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence 567888776 57888877654 3456788999999999999996421100
Q ss_pred ----------------CCCCC----cccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKF----RADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~----~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+++.| +...+.++++++.. ++||.+-|||+ .+.+.++.+ .|||++.+|+++..
T Consensus 123 ~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~-aGAd~vVvGSaIf~ 200 (220)
T PRK08883 123 EYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAE-AGADMFVAGSAIFG 200 (220)
T ss_pred HHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHhC
Confidence 11212 12345677776654 38999999997 899988886 89999999999876
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 201 ~~d 203 (220)
T PRK08883 201 QPD 203 (220)
T ss_pred CCC
Confidence 444
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=71.28 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~ 76 (230)
-+.+.+.++.+++... +||.+-== -+.+-++.|.++|+|.|-|--. |+... + .|-+.+..+.+++
T Consensus 133 s~~~~~~ik~ik~~~~~~~viaGNV------~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~-G-vG~PQ~tAv~~~a 204 (352)
T PF00478_consen 133 SEHVIDMIKKIKKKFPDVPVIAGNV------VTYEGAKDLIDAGADAVKVGIGPGSICTTREVT-G-VGVPQLTAVYECA 204 (352)
T ss_dssp SHHHHHHHHHHHHHSTTSEEEEEEE-------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHH-S-BSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCceEEeccc------CCHHHHHHHHHcCCCEEEEeccCCccccccccc-c-cCCcHHHHHHHHH
Confidence 3556677888877764 77765421 2356778899999999998532 22211 1 2344667776665
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+ ..++|||+-|||++.-|+.++|. .|||.||+|+-+-+--
T Consensus 205 ~~a~~~~v~iIADGGi~~sGDi~KAla-~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 205 EAARDYGVPIIADGGIRTSGDIVKALA-AGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHHHCTTSEEEEESS-SSHHHHHHHHH-TT-SEEEESTTTTTBT
T ss_pred HHhhhccCceeecCCcCcccceeeeee-ecccceeechhhccCc
Confidence 5 35799999999999999999997 8999999999766543
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.5e-05 Score=69.51 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=61.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
-+....+.|+|+|.+.+...........+..++.++.+++..++||++-||| +++++.++++ +|++||.++++++..+
T Consensus 252 e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI-~~~ni~~l~~-~Ga~gVAvisaI~~a~ 329 (347)
T PRK02615 252 EMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGI-DKSNIPEVLQ-AGAKRVAVVRAIMGAE 329 (347)
T ss_pred HHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCcEEEEeHHHhCCC
Confidence 3455567899999998765432211123567899999999999999999999 4899988775 8999999999998754
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
.
T Consensus 330 d 330 (347)
T PRK02615 330 D 330 (347)
T ss_pred C
Confidence 4
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=62.70 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+.++++++..++||+..-||+|++++.++++ .|||||.+|.+++.
T Consensus 178 ~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~-~GADGvIVGSalVk 223 (250)
T PLN02591 178 ESLLQELKEVTDKPVAVGFGISKPEHAKQIAG-WGADGVIVGSAMVK 223 (250)
T ss_pred HHHHHHHHhcCCCceEEeCCCCCHHHHHHHHh-cCCCEEEECHHHHH
Confidence 34588899988999999999999999999776 89999999999873
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-05 Score=67.36 Aligned_cols=105 Identities=17% Similarity=0.133 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHHHh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.++|+.+++.. +++|.+-= --+.+-++.|.++|+|.+-|-- -|+... + .|-+.+..+.++++
T Consensus 136 ~~~i~~ik~ik~~~P~~~vIaGN------V~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vt-G-vG~PQltAV~~~a~ 207 (346)
T PRK05096 136 EHFVQFVAKAREAWPDKTICAGN------VVTGEMVEELILSGADIVKVGIGPGSVCTTRVKT-G-VGYPQLSAVIECAD 207 (346)
T ss_pred HHHHHHHHHHHHhCCCCcEEEec------ccCHHHHHHHHHcCCCEEEEcccCCccccCcccc-c-cChhHHHHHHHHHH
Confidence 45566677776654 44544321 1244678889999999997631 233221 1 23456666666654
Q ss_pred ---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 78 ---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 78 ---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..++|||+-|||++.-|+.++|. .|||.||+|+-+-+-..
T Consensus 208 ~a~~~gvpiIADGGi~~sGDI~KAla-aGAd~VMlGsllAGt~E 250 (346)
T PRK05096 208 AAHGLGGQIVSDGGCTVPGDVAKAFG-GGADFVMLGGMLAGHEE 250 (346)
T ss_pred HHHHcCCCEEecCCcccccHHHHHHH-cCCCEEEeChhhcCccc
Confidence 45899999999999999999997 89999999987766543
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.5e-05 Score=62.39 Aligned_cols=77 Identities=16% Similarity=0.299 Sum_probs=57.9
Q ss_pred HHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
..+.+.|+|++.+........ ....++..++.++++++.. ++||++.||| +.+++.++++ +|++||++|++++..+
T Consensus 110 ~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~-~G~~gva~~~~i~~~~ 187 (196)
T TIGR00693 110 AEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLA-AGADGVAVVSAIMQAA 187 (196)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence 456678999999866533221 1122345789999998765 5999999999 5899998885 8999999999988654
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
+
T Consensus 188 d 188 (196)
T TIGR00693 188 D 188 (196)
T ss_pred C
Confidence 3
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.6e-05 Score=63.39 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=55.7
Q ss_pred cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc-cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 45 AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI-PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 45 ~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i-pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|-..+.+-.... ...+.+.+.++++++.+++ ||++.|||+|++++.+++. .|||+|.+|..+..||.
T Consensus 153 ~g~~~vYle~gs~-----~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~-~GAD~VVVGSai~~d~~ 221 (232)
T PRK04169 153 LGMPIVYLEYGGG-----AGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMA-AGADTIVVGNIIEEDPK 221 (232)
T ss_pred cCCCeEEEECCCC-----CCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence 4655555443221 2235688999999999998 9999999999999999887 79999999999999988
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.7e-05 Score=64.10 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+...++.|+|+|.+.+-....+. ...+...+.++++++.+++||++-||| +.+++.++++ +|++||.+-++++..++
T Consensus 124 a~~A~~~gaDYv~~Gpv~t~tK~-~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~-~GA~giAvisai~~~~d 200 (221)
T PRK06512 124 AMEIGELRPDYLFFGKLGADNKP-EAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAE-TGAEFVALERAVFDAHD 200 (221)
T ss_pred HHHhhhcCCCEEEECCCCCCCCC-CCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHH-hCCCEEEEhHHhhCCCC
Confidence 44456789999999876322221 123456788888888899999999999 8999999986 89999999999986554
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.9e-05 Score=62.78 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
-++.+.+.|+|++.+.+-..........+..|+.+.++++..++||++-||| +++++.++.+ +|++||.+-|++
T Consensus 107 e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI-~~~~i~~l~~-~Ga~gvAvi~aI 180 (180)
T PF02581_consen 107 EAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGI-TPENIPELRE-AGADGVAVISAI 180 (180)
T ss_dssp HHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHH-TT-SEEEESHHH
T ss_pred HHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHH-cCCCEEEEEeeC
Confidence 3777788999999999875443222225668999999999999999999999 6889988775 999999988763
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00015 Score=62.35 Aligned_cols=104 Identities=18% Similarity=0.273 Sum_probs=73.9
Q ss_pred HHHHHHhhcCCceEE--EEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC---CC------------------------
Q 026945 9 SLVEKLALNLNVPVS--CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR---DE------------------------ 59 (230)
Q Consensus 9 eiv~~v~~~~~~pvs--vKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~---~~------------------------ 59 (230)
++++++++.+++|+. +|.... ..+..++++.+.++|++.+++|.-.. +.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~--~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDY--VDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchh--hhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 789999988889974 555541 34566788888888999888884210 00
Q ss_pred --c--------CC--------CCCc---cc-HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 60 --K--------DG--------KKFR---AD-WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 60 --~--------~~--------~~~~---~~-~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
. .+ ..|. .+ .+.++++++.. +.||+.-|||++++++.++++ .|||+|.+|++++.
T Consensus 142 ~e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~-~gaD~vvvGSai~~ 219 (244)
T PRK13125 142 DLLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALS-AGADGVVVGTAFIE 219 (244)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 0 00 0011 11 34677777776 489999999999999999886 89999999998875
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.94 E-value=5e-05 Score=65.08 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|++|+++||..|-.-+-.-. ...|-.+...++.+.+..++||+.-+||.+++|+..+++ .|||||+++.|...
T Consensus 149 v~a~rLed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~AmE-lGaDgVL~nSaIak 223 (267)
T CHL00162 149 MLAKHLEDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAME-LGASGVLLNTAVAQ 223 (267)
T ss_pred HHHHHHHHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEeecceeec
Confidence 3456667777766654332111 123456889999999999999999999999999999997 89999999998874
|
|
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=97.94 E-value=8.8e-05 Score=66.80 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++.+ ++++.+...-+|+.+++.++++.+++.|+.+|. | + . ++.+++..+.+++.+++
T Consensus 172 ~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------q-P-~-~~~~~~~~~~l~~~~~i 241 (357)
T cd03316 172 LREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEYDLFWFE-------E-P-V-PPDDLEGLARLRQATSV 241 (357)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCccCCCeEc-------C-C-C-CccCHHHHHHHHHhCCC
Confidence 577889999999987 578999888889999999999999999988875 2 1 1 13378899999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++.+.+.+++++.++++...+|.|.+
T Consensus 242 pi~~dE~~~~~~~~~~~i~~~~~d~v~~ 269 (357)
T cd03316 242 PIAAGENLYTRWEFRDLLEAGAVDIIQP 269 (357)
T ss_pred CEEeccccccHHHHHHHHHhCCCCEEec
Confidence 9999999999999999998778998876
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0003 Score=58.13 Aligned_cols=103 Identities=20% Similarity=0.247 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCCceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.+.++++.+++. ++++.+= +.. ....+..+ +...|++++.++. ++... .+ .+...+.++++++..++|
T Consensus 90 ~~~~~~i~~~~~~-g~~~~v~~~~~----~t~~e~~~-~~~~~~d~v~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~~~ 160 (202)
T cd04726 90 STIKKAVKAAKKY-GKEVQVDLIGV----EDPEKRAK-LLKLGVDIVILHRGIDAQA-AG--GWWPEDDLKKVKKLLGVK 160 (202)
T ss_pred HHHHHHHHHHHHc-CCeEEEEEeCC----CCHHHHHH-HHHCCCCEEEEcCcccccc-cC--CCCCHHHHHHHHhhcCCC
Confidence 4466777777653 5655543 222 12234444 6778999999863 33221 11 234568888888767899
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++.|||+ ++++.++++ .|+|+|.+|+++...+.
T Consensus 161 i~~~GGI~-~~~i~~~~~-~Gad~vvvGsai~~~~d 194 (202)
T cd04726 161 VAVAGGIT-PDTLPEFKK-AGADIVIVGRAITGAAD 194 (202)
T ss_pred EEEECCcC-HHHHHHHHh-cCCCEEEEeehhcCCCC
Confidence 99999995 999999997 89999999999876544
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0001 Score=61.43 Aligned_cols=104 Identities=17% Similarity=0.305 Sum_probs=71.0
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
.++.+++..+.++...+.+... ...+. ......|+|++.+...+.....+...+.+|+.+++++ .++|+++.|||
T Consensus 87 ~~~~l~~~~~~~~i~~i~~~~~--~~~~~-~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI 161 (203)
T cd00405 87 YCAQLRARLGLPVIKAIRVKDE--EDLEK-AAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL 161 (203)
T ss_pred HHHHHHhhcCCcEEEEEecCCh--hhHHH-hhhccccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC
Confidence 3455555445566544554322 11222 2334578999988776654322233357999998887 68999999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+++.+.++++..+++||-+++|+...|-.
T Consensus 162 -~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~ 190 (203)
T cd00405 162 -TPDNVAEAIRLVRPYGVDVSSGVETSPGI 190 (203)
T ss_pred -ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence 89999999985449999999998887765
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00026 Score=60.80 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHhhcCCceEEE--EECCCCChHHHHHHHHHHHHcCCCEEEEec--------------------------C
Q 026945 4 LPLVKSLVEKLALNLNVPVSC--KIRVFPNLQDTIKYAKMLEDAGCSLLAVHG--------------------------R 55 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsv--KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~--------------------------r 55 (230)
.+...++++.+++..++|+.+ +...-.. .....|++.+.++|++.++++. -
T Consensus 61 ~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~-~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~ 139 (242)
T cd04724 61 LKDVLELVKEIRKKNTIPIVLMGYYNPILQ-YGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPT 139 (242)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEecCHHHH-hCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 456788999999877888755 4332110 0124567777777777777721 1
Q ss_pred CCCCc-----------------CCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 56 TRDEK-----------------DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 56 t~~~~-----------------~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
|...+ .+..| +...+.++++++..++||+..|||++.+++.++.+ . ||+|.+|.+
T Consensus 140 T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vggGI~~~e~~~~~~~-~-ADgvVvGSa 217 (242)
T cd04724 140 TPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGFGISTPEQAAEVAK-Y-ADGVIVGSA 217 (242)
T ss_pred CCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEccCCCHHHHHHHHc-c-CCEEEECHH
Confidence 11000 01111 11246788888888999999999999999999886 6 999999987
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 218 iv~ 220 (242)
T cd04724 218 LVK 220 (242)
T ss_pred HHH
Confidence 763
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.6e-05 Score=63.30 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|++|+++||..+-.-+-.-. ...|-.+...++.+.+..++|||.-+||.++.|+..+++ .|||+|++..+.-.
T Consensus 135 v~akrL~d~GcaavMPlgsPIG---Sg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AME-lG~daVLvNTAiA~ 209 (247)
T PF05690_consen 135 VLAKRLEDAGCAAVMPLGSPIG---SGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAME-LGADAVLVNTAIAK 209 (247)
T ss_dssp HHHHHHHHTT-SEBEEBSSSTT---T---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHHH-TT-SEEEESHHHHT
T ss_pred HHHHHHHHCCCCEEEecccccc---cCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHH-cCCceeehhhHHhc
Confidence 4566777777777765442211 123456788999999999999999999999999999997 89999999887654
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=61.18 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=67.6
Q ss_pred HHHHHHHHhhcCCceEE--EEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc------------------------
Q 026945 7 VKSLVEKLALNLNVPVS--CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK------------------------ 60 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvs--vKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~------------------------ 60 (230)
-.++++++++..+.|+. ++++ + ..++++.+.++|++.|++|+......
T Consensus 44 ~~~~v~~i~~~~~~~v~v~lm~~---~---~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~ 117 (210)
T TIGR01163 44 GPPVLEALRKYTDLPIDVHLMVE---N---PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPL 117 (210)
T ss_pred CHHHHHHHHhcCCCcEEEEeeeC---C---HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCH
Confidence 34567777765566653 4444 1 34667777888888888886421000
Q ss_pred -------------------CCCCC-cccHHH---HHHHHhhCC-----ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 61 -------------------DGKKF-RADWNA---IKAVKNALR-----IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 61 -------------------~~~~~-~~~~~~---i~~i~~~~~-----ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.++ ..+|.. ++++++.++ +|+++.|||+ ++++.++++ +|+|++.+|++
T Consensus 118 e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~-~gad~iivgsa 195 (210)
T TIGR01163 118 EFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAE-AGADILVAGSA 195 (210)
T ss_pred HHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHH-cCCCEEEEChH
Confidence 01111 123433 444544433 7999999995 799998885 89999999999
Q ss_pred hhhCCcc
Q 026945 113 LLENPAL 119 (230)
Q Consensus 113 ~l~nP~l 119 (230)
++..|+.
T Consensus 196 i~~~~d~ 202 (210)
T TIGR01163 196 IFGADDY 202 (210)
T ss_pred HhCCCCH
Confidence 9877653
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00053 Score=61.39 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=72.8
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc----ccHHHHHHHHhhCCc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNALRI 81 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~~i 81 (230)
...+-+...++..+.||.+-+. +.+.++..++++.++++|+|+|.+|--......+..+. .-.+.++.+++.+++
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~-g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~i 164 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLN-GVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTI 164 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCC
Confidence 3344444555555789988884 45667889999999999999999986421111111111 124778888888899
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||+ .++++.+..++.+.+++.|+|+|.+.
T Consensus 165 Pv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 165 PVAVKLSPFFSALAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred CEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence 998 45677778888888888999998653
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=60.05 Aligned_cols=79 Identities=13% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+..+.+.|+|++.+.+-..... .+..++..|+.++++.+. .++||++-||| +.+++.++++ +|++||.+-++++..
T Consensus 115 ~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~-~Ga~GiAvisai~~~ 192 (211)
T PRK03512 115 IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLA-TGVGSIAVVSAITQA 192 (211)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEhhHhhCC
Confidence 4555678999999988644322 223345678888888776 58999999999 5899998886 899999999998866
Q ss_pred Ccc
Q 026945 117 PAL 119 (230)
Q Consensus 117 P~l 119 (230)
++.
T Consensus 193 ~d~ 195 (211)
T PRK03512 193 ADW 195 (211)
T ss_pred CCH
Confidence 653
|
|
| >KOG0134 consensus NADH:flavin oxidoreductase/12-oxophytodienoate reductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=66.26 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEEC------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCC----Cc
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIR------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKK----FR 66 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~----~~ 66 (230)
-.++.|++++|++.++ .+..+-.+ .+++.++....|..+++.|.+.+.+.+++....- +.+ ..
T Consensus 224 ~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~~h~i~~R~~~~~~~~ 303 (400)
T KOG0134|consen 224 CRFPLEVVDAVRKEIPASRVFLRGSPTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAYVHFIEPRQSTIAREA 303 (400)
T ss_pred hhhhHHHHHHHHHhhccccceEEecCchhhhhccccccchHHHHHHHHhcccchhhccCchhhhhhhhcccccccccccc
Confidence 3567788999988762 22222222 1345567788899999999996666554433210 011 11
Q ss_pred ccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 67 ADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
...+....++...+.||+ ++|+.++.+.+.++++....|+|..||.++.||++..++..+
T Consensus 304 ~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~ 364 (400)
T KOG0134|consen 304 FFVEFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG 364 (400)
T ss_pred chhhhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence 234556667777777766 677899999999999988888999999999999999987653
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=63.04 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC--CCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG--gI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+..+..++.|+|+|.+.-.+....+...++.+++.++++++.+++|+++-| || +.+++.++++ +|+++|-+++++.
T Consensus 157 ea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~-~G~~kinv~T~i~ 234 (281)
T PRK06806 157 EAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQ-HGIRKINVATATF 234 (281)
T ss_pred HHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHH-cCCcEEEEhHHHH
Confidence 333344568999998843332221112345799999999999999999999 99 6888999886 8999999999998
Q ss_pred hCC
Q 026945 115 ENP 117 (230)
Q Consensus 115 ~nP 117 (230)
.+|
T Consensus 235 ~a~ 237 (281)
T PRK06806 235 NSV 237 (281)
T ss_pred HHH
Confidence 853
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0002 Score=63.35 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=57.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
-+..+.+.|+|++.+.+-..........+..++.++++++.+++||++-||| +++++.++++ +|++||.+-+++
T Consensus 238 ~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~~Pv~AiGGI-~~~~~~~~~~-~g~~gva~i~~~ 311 (312)
T PRK08999 238 ELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVPLPVYALGGL-GPGDLEEARE-HGAQGIAGIRGL 311 (312)
T ss_pred HHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-hCCCEEEEEEEe
Confidence 3556677899999998864432211123557899999999999999999999 8999999886 899999887654
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00073 Score=61.20 Aligned_cols=90 Identities=20% Similarity=0.344 Sum_probs=67.7
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------c-CCCCCcC------------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------G-RTRDEKD------------------------------ 61 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~-rt~~~~~------------------------------ 61 (230)
+-|.+.++.+..|.+.+.+++++.+++|+..|.+. | |.++.++
T Consensus 120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (366)
T PLN02979 120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 199 (366)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence 44677777766677788899999999999998773 1 2111110
Q ss_pred -----CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 -----GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 -----~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+..+|+.++.+++..++|||+ .||.+.+|+..+.+ .|+|+|.++
T Consensus 200 ~~~~~~~~~~ltW~dl~wlr~~~~~Pviv-KgV~~~~dA~~a~~-~Gvd~I~Vs 251 (366)
T PLN02979 200 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 251 (366)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHh-cCCCEEEEC
Confidence 012346799999999999999998 66779999999887 899998774
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00042 Score=60.00 Aligned_cols=106 Identities=18% Similarity=0.335 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+++.+.++++...+ .++-+-|=+. +.++ ++.+.++|++.|-|..|.-.. ...|.+...++...++
T Consensus 143 ~~~~l~~l~~~a~~-lGle~lVEVh---~~~E----l~~al~~~a~iiGINnRdL~t-----f~vd~~~~~~l~~~ip~~ 209 (254)
T PF00218_consen 143 SDDQLEELLELAHS-LGLEALVEVH---NEEE----LERALEAGADIIGINNRDLKT-----FEVDLNRTEELAPLIPKD 209 (254)
T ss_dssp GHHHHHHHHHHHHH-TT-EEEEEES---SHHH----HHHHHHTT-SEEEEESBCTTT-----CCBHTHHHHHHHCHSHTT
T ss_pred CHHHHHHHHHHHHH-cCCCeEEEEC---CHHH----HHHHHHcCCCEEEEeCccccC-----cccChHHHHHHHhhCccc
Confidence 34555666666544 5666666665 2222 444558899999999987653 2567788888877664
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.+|+-+||.|++|+..+.+ .|+|||.||+++|.+|+.-..
T Consensus 210 ~~~iseSGI~~~~d~~~l~~-~G~davLVGe~lm~~~d~~~~ 250 (254)
T PF00218_consen 210 VIVISESGIKTPEDARRLAR-AGADAVLVGEALMRSPDPGEA 250 (254)
T ss_dssp SEEEEESS-SSHHHHHHHCT-TT-SEEEESHHHHTSSSHHHH
T ss_pred eeEEeecCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHH
Confidence 78899999999999998775 899999999999999886543
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00086 Score=60.91 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=70.2
Q ss_pred HhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC------------------------
Q 026945 14 LALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG------------------------ 62 (230)
Q Consensus 14 v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~------------------------ 62 (230)
|.+..+-|....+-+..|.+.+.+++++.+++|+..|.|.- |.+..+++
T Consensus 118 va~~~~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~ 197 (364)
T PLN02535 118 VASSCNAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSG 197 (364)
T ss_pred HHhcCCCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCcccccc
Confidence 33333456777777766777889999999999999987741 21211111
Q ss_pred --------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 63 --------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 63 --------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+..+|+.++.+++..++||++ .||.+++|+..+.+ .|+|+|.++
T Consensus 198 ~~~~~~~~~~~~~tW~~i~~lr~~~~~Pviv-KgV~~~~dA~~a~~-~GvD~I~vs 251 (364)
T PLN02535 198 LEAFASETFDASLSWKDIEWLRSITNLPILI-KGVLTREDAIKAVE-VGVAGIIVS 251 (364)
T ss_pred HHHHHHhccCCCCCHHHHHHHHhccCCCEEE-ecCCCHHHHHHHHh-cCCCEEEEe
Confidence 12346899999999999999988 77889999998886 899999774
|
|
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=71.84 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHH-HHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNA-IKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~-i~~ 74 (230)
.++-+..+|..++... +.||+||+-.+.... .++..+.++|+|.|+|.|........ +. +.-|+. +.+
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg---~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~-GlP~e~gL~~ 1054 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGVG---TIATGVAKAYADLITISGYDGGTGASPLTSVKYA-GSPWELGLAE 1054 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCCCcc---HHHhChhhcCCCEEEEeCCCCCcccccHHHHhhC-CccHHHHHHH
Confidence 5677889999999876 689999997643321 35556778999999999864321100 11 223443 434
Q ss_pred HHhh-----C--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 75 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 75 i~~~-----~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+. + .+.+++.|+++|+.|+..++. .|||.|.+|+++|----
T Consensus 1055 ~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~a-LGAd~~~~gt~~lialG 1104 (1485)
T PRK11750 1055 THQALVANGLRHKIRLQVDGGLKTGLDVIKAAI-LGAESFGFGTGPMVALG 1104 (1485)
T ss_pred HHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHH-cCCcccccchHHHHHcC
Confidence 3332 2 499999999999999999997 89999999999987544
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00099 Score=60.55 Aligned_cols=90 Identities=20% Similarity=0.344 Sum_probs=66.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------c-CCCCCcCC-----------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------G-RTRDEKDG----------------------------- 62 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------~-rt~~~~~~----------------------------- 62 (230)
+-|....+-+..|.+.+.+++++.+++|+..|.|. | |.++.+++
T Consensus 121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (367)
T PLN02493 121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA 200 (367)
T ss_pred CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence 34566666665677778899999999999998774 1 21111100
Q ss_pred ------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 63 ------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 63 ------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+..+|+.++.+++..++|||+ .||.+.+|+..+.+ .|+|+|.++
T Consensus 201 ~~~~~~~~~~~tW~di~wlr~~~~~Piiv-KgV~~~~dA~~a~~-~Gvd~I~Vs 252 (367)
T PLN02493 201 SYVAGQIDRTLSWKDVQWLQTITKLPILV-KGVLTGEDARIAIQ-AGAAGIIVS 252 (367)
T ss_pred HHHhhcCCCCCCHHHHHHHHhccCCCEEe-ecCCCHHHHHHHHH-cCCCEEEEC
Confidence 12346899999999999999998 66779999999997 899999774
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00065 Score=58.76 Aligned_cols=78 Identities=22% Similarity=0.307 Sum_probs=60.4
Q ss_pred HHHHHHH-HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 35 TIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 35 ~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
..+.++. ++..++|.|.|+|.... .+++.+.++++++.+++||++++|+ |++.+.+.|. -|||+.+|+.+
T Consensus 160 ~~~~~~~a~~~~~aDaviVtG~~TG------~~~~~~~l~~vr~~~~~PVlvGSGv-t~~Ni~~~l~--~ADG~IVGS~~ 230 (254)
T PF03437_consen 160 LEEAAKDAVERGGADAVIVTGKATG------EPPDPEKLKRVREAVPVPVLVGSGV-TPENIAEYLS--YADGAIVGSYF 230 (254)
T ss_pred HHHHHHHHHHhcCCCEEEECCcccC------CCCCHHHHHHHHhcCCCCEEEecCC-CHHHHHHHHH--hCCEEEEeeee
Confidence 3344544 47789999999986432 2678899999999999999999999 6899999997 49999999865
Q ss_pred hhCCcccc
Q 026945 114 LENPALFA 121 (230)
Q Consensus 114 l~nP~lf~ 121 (230)
-.|=.+..
T Consensus 231 K~~G~~~n 238 (254)
T PF03437_consen 231 KKDGKWEN 238 (254)
T ss_pred eeCCEeCC
Confidence 54443333
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00036 Score=64.36 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=55.9
Q ss_pred HHHHHHHHHcC-CCEEEEecCCCCCcCCCCCc----ccHHHHHHHHhhC--------CccEEEcCCCCCHHHHHHHHHhh
Q 026945 36 IKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFR----ADWNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEET 102 (230)
Q Consensus 36 ~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~----~~~~~i~~i~~~~--------~ipvi~nGgI~s~~da~~~l~~~ 102 (230)
.+-++.+++.| +|.|++. ... .|..+. .-...+.++++.+ ++||++.|||.|++++..+|. .
T Consensus 166 ~~eA~~A~~~g~aD~Ivvq-~EA---GGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~a-l 240 (418)
T cd04742 166 EEQAELARRVPVADDITVE-ADS---GGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFA-L 240 (418)
T ss_pred HHHHHHHHhCCCCCEEEEc-ccC---CCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHH-c
Confidence 34455555566 6999996 221 122221 2234455555554 699999999999999999997 7
Q ss_pred CCcEEEEehhhhhCCcc
Q 026945 103 GCEGVLSAESLLENPAL 119 (230)
Q Consensus 103 gadgVmigR~~l~nP~l 119 (230)
|||+|++|..++.-+.-
T Consensus 241 GAd~V~~GT~flat~Ea 257 (418)
T cd04742 241 GADFIVTGSINQCTVEA 257 (418)
T ss_pred CCcEEeeccHHHhCccc
Confidence 99999999999997764
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00053 Score=59.39 Aligned_cols=77 Identities=26% Similarity=0.419 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
...+.++.....| +|.|+|+|.... .+.+|+.++++++.. ++||+.+||+ +++.+.++++. +||+.+|+
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~TG------~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~--adGviVgS 228 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKTTG------TEVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI--ADGVIVAT 228 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCCCC------CCCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh--CCEEEECC
Confidence 4556777766666 999999996432 267999999999865 6899999999 69999999984 99999999
Q ss_pred hhhhCCccc
Q 026945 112 SLLENPALF 120 (230)
Q Consensus 112 ~~l~nP~lf 120 (230)
++= +|-.+
T Consensus 229 ~~K-~~G~~ 236 (257)
T TIGR00259 229 TIK-KDGVF 236 (257)
T ss_pred Ccc-cCCcc
Confidence 865 44433
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0015 Score=57.34 Aligned_cols=73 Identities=19% Similarity=0.314 Sum_probs=55.3
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC--CCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG--gI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+..++.|+|+|.+.-.|.-..+...+..+++.++++++.+++|+++-| || +.+++.++++ .|+++|-+++.+.
T Consensus 160 ~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~-~Gi~kiNv~T~l~ 234 (282)
T TIGR01859 160 QFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIK-LGIAKINIDTDCR 234 (282)
T ss_pred HHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHH-cCCCEEEECcHHH
Confidence 333458999999753332211112356789999999999999999999 88 5788888887 7999999988654
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0026 Score=55.22 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.+.++++++..++||+..+||++++++.++++ +||||.+|.+++
T Consensus 189 ~~~i~~vk~~~~~pv~vGfGI~~~e~v~~~~~--~ADGviVGSaiv 232 (258)
T PRK13111 189 AELVARLKAHTDLPVAVGFGISTPEQAAAIAA--VADGVIVGSALV 232 (258)
T ss_pred HHHHHHHHhcCCCcEEEEcccCCHHHHHHHHH--hCCEEEEcHHHH
Confidence 45899999989999999999999999999886 499999999887
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0016 Score=55.50 Aligned_cols=104 Identities=15% Similarity=0.356 Sum_probs=71.5
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-c---------CC---------------
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-K---------DG--------------- 62 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-~---------~~--------------- 62 (230)
++++++++.. ++|+.+|+=+ .+...+++.+.++|++.++||.-+... - .+
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~----~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~ 129 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMV----SNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEV 129 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECC----CCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHH
Confidence 5788888877 8999999873 345567789999999999999753221 0 00
Q ss_pred ---------------------CCCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 63 ---------------------KKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 63 ---------------------~~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.|.. ..+.++++++.. .+.+...||| +.+.+..+.+ .|+|.+++||++..+
T Consensus 130 l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~-aGad~iVvGsaI~~a 207 (228)
T PTZ00170 130 LFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAAD-AGANVIVAGSSIFKA 207 (228)
T ss_pred HHHHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHH-cCCCEEEEchHHhCC
Confidence 00110 123344455543 3678889999 4678887776 899999999987766
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
++
T Consensus 208 ~d 209 (228)
T PTZ00170 208 KD 209 (228)
T ss_pred CC
Confidence 55
|
|
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=59.53 Aligned_cols=89 Identities=18% Similarity=0.268 Sum_probs=67.0
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe------------cCCCC---C----------c-------------C
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH------------GRTRD---E----------K-------------D 61 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh------------~rt~~---~----------~-------------~ 61 (230)
-|...++-+..|.+.+.+++++.+++|+..|.+. -|+.. . . .
T Consensus 138 ~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (383)
T cd03332 138 APRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGED 217 (383)
T ss_pred CCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCCC
Confidence 4667776665566778899999999999998886 11110 0 0 0
Q ss_pred C-----------------CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 G-----------------KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 ~-----------------~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
. ..+..+|+.++++++..++||++- ||.|.+|+..+.+ .|+|+|.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK-gV~~~~dA~~a~~-~G~d~I~vs 281 (383)
T cd03332 218 PEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK-GILHPDDARRAVE-AGVDGVVVS 281 (383)
T ss_pred cccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe-cCCCHHHHHHHHH-CCCCEEEEc
Confidence 0 013468999999999999999984 7789999999997 899999885
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0039 Score=61.08 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
++.+.++++...+ .++-+.|-++ +. +-+++..++|++.|-|..|.-.. -..|.+...++...+ ++
T Consensus 146 ~~~l~~l~~~a~~-lGme~LvEvh---~~----~el~~a~~~ga~iiGINnRdL~t-----f~vd~~~t~~L~~~ip~~~ 212 (695)
T PRK13802 146 DAQLKHLLDLAHE-LGMTVLVETH---TR----EEIERAIAAGAKVIGINARNLKD-----LKVDVNKYNELAADLPDDV 212 (695)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeC---CH----HHHHHHHhCCCCEEEEeCCCCcc-----ceeCHHHHHHHHhhCCCCc
Confidence 3445555554433 4555555554 21 22445566788888888886543 256778888887776 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+|+-+||+|++|+..+.+ .|+|+|.||.++|..|+.-.
T Consensus 213 ~~VsESGI~~~~d~~~l~~-~G~davLIGeslm~~~dp~~ 251 (695)
T PRK13802 213 IKVAESGVFGAVEVEDYAR-AGADAVLVGEGVATADDHEL 251 (695)
T ss_pred EEEEcCCCCCHHHHHHHHH-CCCCEEEECHHhhCCCCHHH
Confidence 7888899999999998886 89999999999999988533
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=62.28 Aligned_cols=78 Identities=8% Similarity=0.072 Sum_probs=60.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcC-CCCCcccHHHHHHHHhhC---------CccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVKNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~-~~~~~~~~~~i~~i~~~~---------~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
+....+.|+|+|.+.+-...... ....+..|+.++++++.+ ++||++-||| +.+++.++++ +|++||.
T Consensus 313 l~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~-aGa~GVA 390 (437)
T PRK12290 313 LLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQ-CGVSSLA 390 (437)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHH-cCCCEEE
Confidence 45566789999999886544321 123456788888776654 6999999999 7999999996 9999999
Q ss_pred EehhhhhCCc
Q 026945 109 SAESLLENPA 118 (230)
Q Consensus 109 igR~~l~nP~ 118 (230)
+-|+++..++
T Consensus 391 VVSAI~~A~D 400 (437)
T PRK12290 391 VVRAITLAED 400 (437)
T ss_pred EehHhhcCCC
Confidence 9999986554
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00066 Score=56.99 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
..+..++|+.++++|+++|++..-.... .-..+.++.+++.+++||+.-|.+.+...++.+++ .|||+|.++-
T Consensus 30 ~~~~~~~A~~~~~~GA~~l~v~~~~~~~------~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~-~Gad~v~l~~ 102 (217)
T cd00331 30 DFDPVEIAKAYEKAGAAAISVLTEPKYF------QGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARA-AGADAVLLIV 102 (217)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCcccc------CCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHH-cCCCEEEEee
Confidence 3568999999999999999988654321 12457888888888999999888999988888886 8999998876
Q ss_pred hhhh
Q 026945 112 SLLE 115 (230)
Q Consensus 112 ~~l~ 115 (230)
..+.
T Consensus 103 ~~~~ 106 (217)
T cd00331 103 AALD 106 (217)
T ss_pred ccCC
Confidence 6554
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0007 Score=57.52 Aligned_cols=79 Identities=11% Similarity=0.286 Sum_probs=56.4
Q ss_pred HHHHHHHHHcC-CCEE---EEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~G-~~~i---~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.++.+.+.| +|+| ++++.+..+. ..+...+.++++++. .++||.+-||| +.+++.++.+ .|+|+|.+|
T Consensus 128 ~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~---~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~-aGad~vvvg 202 (229)
T PLN02334 128 VEAVEPVVEKGLVDMVLVMSVEPGFGGQS---FIPSMMDKVRALRKKYPELDIEVDGGV-GPSTIDKAAE-AGANVIVAG 202 (229)
T ss_pred HHHHHHHHhccCCCEEEEEEEecCCCccc---cCHHHHHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHH-cCCCEEEEC
Confidence 34455555554 9998 5555433321 123456777888776 35899999999 7999998886 899999999
Q ss_pred hhhhhCCcc
Q 026945 111 ESLLENPAL 119 (230)
Q Consensus 111 R~~l~nP~l 119 (230)
+++...++.
T Consensus 203 sai~~~~d~ 211 (229)
T PLN02334 203 SAVFGAPDY 211 (229)
T ss_pred hHHhCCCCH
Confidence 998876653
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=57.02 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred HHHHHHHHHhh---cCCceEEEEECCCCCh--------HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 6 LVKSLVEKLAL---NLNVPVSCKIRVFPNL--------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 6 ~~~eiv~~v~~---~~~~pvsvKiR~g~~~--------~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.+.+.++.+++ ..++||.+=.-+ .+. +.....++.+.++|+|+|-..-... . + ...-+.+.+++
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~--~-~-~t~~~~~~~~~ 183 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDLIARAARIAAELGADFVKTSTGKP--V-G-ATPEDVELMRK 183 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSS--S-C-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHHHHHHHHHHHHhCCCEEEecCCcc--c-c-ccHHHHHHHHH
Confidence 33444444443 347888876332 211 1356788888999999998765411 1 1 11234556666
Q ss_pred HHhhCCcc----EEEcCCC------CCHHHHHHHHHhhCC--cEEEEehhhh
Q 026945 75 VKNALRIP----VLANGNV------RHMEDVQKCLEETGC--EGVLSAESLL 114 (230)
Q Consensus 75 i~~~~~ip----vi~nGgI------~s~~da~~~l~~~ga--dgVmigR~~l 114 (230)
+.+..++| |.++||+ ++.+++.++++ .|| -|+++||.++
T Consensus 184 ~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~-aGa~~~G~~~Gr~i~ 234 (236)
T PF01791_consen 184 AVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIE-AGADRIGTSSGRNIW 234 (236)
T ss_dssp HHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHH-TTHSEEEEEEHHHHH
T ss_pred HHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHH-cCChhHHHHHHHHHH
Confidence 66667899 9999999 99999999997 899 8999999765
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=58.41 Aligned_cols=94 Identities=22% Similarity=0.278 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IP 82 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ip 82 (230)
++...+.++.+++...+.+.+ +.+ .+..+.++.+.++|++.|.+..... .. ..-++.++++++..+ +|
T Consensus 69 ~~~~~~~i~~vk~~l~v~~~~----~~~-~~~~~~~~~l~eagv~~I~vd~~~G-----~~-~~~~~~i~~ik~~~p~v~ 137 (325)
T cd00381 69 IEEQAEEVRKVKGRLLVGAAV----GTR-EDDKERAEALVEAGVDVIVIDSAHG-----HS-VYVIEMIKFIKKKYPNVD 137 (325)
T ss_pred HHHHHHHHHHhccCceEEEec----CCC-hhHHHHHHHHHhcCCCEEEEECCCC-----Cc-HHHHHHHHHHHHHCCCce
Confidence 455566667766543333332 222 4567888899999999999865321 11 123578899998774 88
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|++ |++.|.+++..+.+ .|+|+|.+|
T Consensus 138 Vi~-G~v~t~~~A~~l~~-aGaD~I~vg 163 (325)
T cd00381 138 VIA-GNVVTAEAARDLID-AGADGVKVG 163 (325)
T ss_pred EEE-CCCCCHHHHHHHHh-cCCCEEEEC
Confidence 888 99999999999886 899999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00069 Score=60.46 Aligned_cols=113 Identities=18% Similarity=0.129 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCC---C----------------------Ch----------------HHHHHHHH
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVF---P----------------------NL----------------QDTIKYAK 40 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g---~----------------------~~----------------~~~~~~a~ 40 (230)
.|+.+.+.++.+++. .+.|+.|.+-+. + .. -.+...++
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s~~~A~ 117 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPSPGLLK 117 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 577788888888774 577777766221 0 00 01346788
Q ss_pred HHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHHhh----------CCccEEEcCCCCCHHHHHHHHHhhCC-----
Q 026945 41 MLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNA----------LRIPVLANGNVRHMEDVQKCLEETGC----- 104 (230)
Q Consensus 41 ~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~~~----------~~ipvi~nGgI~s~~da~~~l~~~ga----- 104 (230)
.++++|+|.|.+.|...-. ..|+ ..+..+.++.+. .++|||+.|||.+...+..++. .|+
T Consensus 118 ~a~~~GaD~vVaqG~EAGG---H~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaala-LGA~~~~~ 193 (320)
T cd04743 118 QFLENGARKFIFEGRECGG---HVGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVSA-LAAPLAER 193 (320)
T ss_pred HHHHcCCCEEEEecCcCcC---CCCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHHH-cCCccccc
Confidence 8899999999998875542 2221 112233333222 2799999999999999988886 566
Q ss_pred ---cEEEEehhhhhCCcc
Q 026945 105 ---EGVLSAESLLENPAL 119 (230)
Q Consensus 105 ---dgVmigR~~l~nP~l 119 (230)
+||.+|..++.-+..
T Consensus 194 Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccEEEEccHHhcchhh
Confidence 899999998887665
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=53.34 Aligned_cols=72 Identities=13% Similarity=0.224 Sum_probs=47.9
Q ss_pred CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 47 CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 47 ~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
++++.+.+..............++.++++++.. ++|+++.|||+ ++++.++++ .|+|+|.+|++++..+...
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~-~gad~iivgsai~~~~~~~ 204 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAE-AGADVLVAGSALFGSDDYA 204 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEECHHHhCCCCHH
Confidence 788866554321100001112234556666655 38999999997 599998886 8999999999998776643
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=57.76 Aligned_cols=82 Identities=15% Similarity=0.309 Sum_probs=64.4
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
+.|+++++.+++||.-++|.+. ..-++.|.++|+|.|.-+.|.+ | ..+.+..+|...++|+++ |
T Consensus 55 ~~I~~Ik~~V~iPVIGi~K~~~-----~~Ea~~L~eaGvDiIDaT~r~r--------P-~~~~~~~iK~~~~~l~MA--D 118 (283)
T cd04727 55 KMIKEIMDAVSIPVMAKVRIGH-----FVEAQILEALGVDMIDESEVLT--------P-ADEEHHIDKHKFKVPFVC--G 118 (283)
T ss_pred HHHHHHHHhCCCCeEEeeehhH-----HHHHHHHHHcCCCEEeccCCCC--------c-HHHHHHHHHHHcCCcEEc--c
Confidence 3477777788999999998654 5668899999999995333321 2 467888898877888886 9
Q ss_pred CCCHHHHHHHHHhhCCcEE
Q 026945 89 VRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgV 107 (230)
+.|.+++..+.+ .|+|.|
T Consensus 119 ~stleEal~a~~-~Gad~I 136 (283)
T cd04727 119 ARNLGEALRRIS-EGAAMI 136 (283)
T ss_pred CCCHHHHHHHHH-CCCCEE
Confidence 999999999997 799955
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0016 Score=54.82 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+.+.+.+-+.++++.+ ++|+-|=+=.+ .+.++....++...++|+|+|-.+.... .+++..+.++.+++.+
T Consensus 100 ~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~------~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 100 NEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFG------AGGATVEDVRLMRNTVG 173 (211)
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCC------CCCCCHHHHHHHHHHhc
Confidence 4566777777887766 45555522222 2345667888899999999998653321 1346666666666654
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++||-+.|||+|.+++.++++ .|++-+-...
T Consensus 174 ~~v~IKaaGGirt~~~a~~~i~-aGa~riGts~ 205 (211)
T TIGR00126 174 DTIGVKASGGVRTAEDAIAMIE-AGASRIGASA 205 (211)
T ss_pred cCCeEEEeCCCCCHHHHHHHHH-HhhHHhCcch
Confidence 599999999999999999997 7888665443
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0032 Score=55.63 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=68.0
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHH
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKC 98 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~ 98 (230)
..|+.+.+-...+.+.+.+.++.+.+.|++.|.+|.-..... . ...|+.++++++.+++||++- ++.+.+++..+
T Consensus 115 ~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~--~--~~~~~~i~~l~~~~~~pvivK-~v~s~~~a~~a 189 (299)
T cd02809 115 PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG--R--RLTWDDLAWLRSQWKGPLILK-GILTPEDALRA 189 (299)
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC--C--CCCHHHHHHHHHhcCCCEEEe-ecCCHHHHHHH
Confidence 357777776554667778888999999999999997654321 1 257899999999999999985 47899999887
Q ss_pred HHhhCCcEEEEe
Q 026945 99 LEETGCEGVLSA 110 (230)
Q Consensus 99 l~~~gadgVmig 110 (230)
.+ .|+|+|.++
T Consensus 190 ~~-~G~d~I~v~ 200 (299)
T cd02809 190 VD-AGADGIVVS 200 (299)
T ss_pred HH-CCCCEEEEc
Confidence 75 899999773
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=54.84 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=53.2
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+....+.|+|++-+.+ |. ...-.++++.++..+ ++|+++.||| +++++.++++ +|+++|.++++++.
T Consensus 118 ~~~A~~~Gadyv~~Fp-t~-------~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~-aGa~~vav~s~i~~ 185 (187)
T PRK07455 118 IVTAWQAGASCVKVFP-VQ-------AVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQ-AGAIAVGLSGQLFP 185 (187)
T ss_pred HHHHHHCCCCEEEECc-CC-------cccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHH-CCCeEEEEehhccc
Confidence 4455678999999844 11 122358899999988 5999999999 7899999997 89999999997754
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.001 Score=55.78 Aligned_cols=68 Identities=26% Similarity=0.307 Sum_probs=54.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+....+.|+|++.+.+ . ....+++++.++..+ ++|+++.||| +++++.++++ +|+++|.++++++..
T Consensus 117 ~~~A~~~Gad~vk~Fp---a------~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~-aGa~~vav~s~l~~~ 185 (206)
T PRK09140 117 AFAALRAGAQALKLFP---A------SQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLA-AGAAGFGLGSALYRP 185 (206)
T ss_pred HHHHHHcCCCEEEECC---C------CCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHH-CCCeEEEEehHhccc
Confidence 4555678999998733 1 123478899999887 4999999999 7899999997 899999999998764
Q ss_pred C
Q 026945 117 P 117 (230)
Q Consensus 117 P 117 (230)
.
T Consensus 186 ~ 186 (206)
T PRK09140 186 G 186 (206)
T ss_pred c
Confidence 3
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00083 Score=62.40 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHcC-CCEEEEecCCCCCcCCCCCc-cc---HHHHHHHHhhC--------CccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 40 KMLEDAG-CSLLAVHGRTRDEKDGKKFR-AD---WNAIKAVKNAL--------RIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 40 ~~l~~~G-~~~i~vh~rt~~~~~~~~~~-~~---~~~i~~i~~~~--------~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
..+++.| +|.|++. ... .|..+. .. ...+.++++.+ +|||++.|||.|++++..+|. .|||+
T Consensus 175 ~~a~~~g~aD~Ivve-~EA---GGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAla-LGAdg 249 (444)
T TIGR02814 175 ELARRVPVADDICVE-ADS---GGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFM-LGADF 249 (444)
T ss_pred HHHHhCCCCcEEEEe-ccC---CCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHH-cCCcE
Confidence 3344555 6999884 211 122221 12 33444444555 799999999999999999997 79999
Q ss_pred EEEehhhhhCCcc
Q 026945 107 VLSAESLLENPAL 119 (230)
Q Consensus 107 VmigR~~l~nP~l 119 (230)
|.+|..++.-+.-
T Consensus 250 V~~GT~flat~Es 262 (444)
T TIGR02814 250 IVTGSVNQCTVEA 262 (444)
T ss_pred EEeccHHHhCccc
Confidence 9999999987664
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00075 Score=57.15 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=53.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|++|+++||..+---+-.- ....|..+...++-+.+..++|||.--||.++.|+...++ .|||+|++..+.-
T Consensus 143 ~arrLee~GcaavMPl~aPI---GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aME-lG~DaVL~NTAiA 215 (262)
T COG2022 143 LARRLEEAGCAAVMPLGAPI---GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAME-LGADAVLLNTAIA 215 (262)
T ss_pred HHHHHHhcCceEeccccccc---cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHHh-cccceeehhhHhh
Confidence 45555666665553222111 1123566788899999999999999999999999999997 8999999977554
|
|
| >cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0035 Score=56.66 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+-||+..+++++.++
T Consensus 168 ~~~~d~~~v~air~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 168 TADEDLAVVRSIRQAVGDGVGLMVDYNQSLTVPEAIERGQALDQEGLTWIE-------E--PT-LQHDYEGHARIASALR 237 (355)
T ss_pred ChHhHHHHHHHHHHhhCCCCEEEEeCCCCcCHHHHHHHHHHHHcCCCCEEE-------C--CC-CCcCHHHHHHHHHhcC
Confidence 4556678899999887 467777777778989999999999999999887 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+...+.++.++.++++...+|.|.+
T Consensus 238 ipia~~E~~~~~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 238 TPVQMGENWLGPEEMFKALSAGACDLVMP 266 (355)
T ss_pred CCEEEcCCCcCHHHHHHHHHhCCCCeEec
Confidence 99999888999999999998777887765
|
MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00091 Score=56.60 Aligned_cols=79 Identities=25% Similarity=0.265 Sum_probs=52.2
Q ss_pred HHHHHcCCCEEEEecCCCCCc----CCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEK----DGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~----~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+.+.|.++|.+-+|..... ....+...-+.++.+++.. ++||++.|||++++++..+++ .|+|||.+|++++
T Consensus 128 ~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~-~gadGvlVGsa~l 206 (223)
T PRK04302 128 AAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALE-LGADGVLLASGVV 206 (223)
T ss_pred HHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHc-CCCCEEEEehHHh
Confidence 345566777777666421110 0000111123344566543 699999999999999999885 8999999999999
Q ss_pred hCCcc
Q 026945 115 ENPAL 119 (230)
Q Consensus 115 ~nP~l 119 (230)
..++.
T Consensus 207 ~~~~~ 211 (223)
T PRK04302 207 KAKDP 211 (223)
T ss_pred CCcCH
Confidence 76664
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0027 Score=52.97 Aligned_cols=98 Identities=19% Similarity=0.264 Sum_probs=66.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+.+.+.+-+.++++.+ ++|+-+=+=.+ .+.+.....++...++|+|+|-...... .+++..+.++.+++.+
T Consensus 99 ~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~------~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 99 DYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFG------PGGATVEDVKLMKEAVG 172 (203)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHHhC
Confidence 3455666677777765 45554422222 2345677888899999999998652211 1345566655555544
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEE
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgV 107 (230)
++||-++|||+|.+++.++++ .||+-+
T Consensus 173 ~~v~ik~aGGikt~~~~l~~~~-~g~~ri 200 (203)
T cd00959 173 GRVGVKAAGGIRTLEDALAMIE-AGATRI 200 (203)
T ss_pred CCceEEEeCCCCCHHHHHHHHH-hChhhc
Confidence 699999999999999999997 788754
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0023 Score=54.14 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC--C-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~--g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|++.+.+-|+++++++.-++.+|+=+ + .+.++....++...++|+|+|-=+... ..+++..+.++-+++.
T Consensus 106 g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf------~~~gAT~edv~lM~~~ 179 (228)
T COG0274 106 GNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGF------SAGGATVEDVKLMKET 179 (228)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCC------CCCCCCHHHHHHHHHH
Confidence 368899999999999886445666544 2 344566888899999999999743321 1346777888888887
Q ss_pred CC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 79 LR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 79 ~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++ +.|=++|||+|.+|+..+++ .|+.-+-..+
T Consensus 180 vg~~vgvKaSGGIrt~eda~~~i~-aga~RiGtSs 213 (228)
T COG0274 180 VGGRVGVKASGGIRTAEDAKAMIE-AGATRIGTSS 213 (228)
T ss_pred hccCceeeccCCcCCHHHHHHHHH-HhHHHhcccc
Confidence 75 77889999999999999997 7766554444
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00099 Score=63.00 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=59.8
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc---EEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE---GVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad---gVmigR~~l~ 115 (230)
+....+.|+|+|.+.+-..........+..++.++++++..++||++-||| +++++.++++ +|++ ||.++++++.
T Consensus 403 ~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~-~G~~~~~gvav~~~i~~ 480 (502)
T PLN02898 403 AEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVME-SGAPNLKGVAVVSALFD 480 (502)
T ss_pred HHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHH-cCCCcCceEEEEeHHhc
Confidence 455667899999976653332211123567999999998889999999999 5999998886 7888 9999999885
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 481 ~~d 483 (502)
T PLN02898 481 QED 483 (502)
T ss_pred CCC
Confidence 443
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0031 Score=56.98 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=67.8
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC-------CCcCC----------------------------CC
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-------DEKDG----------------------------KK 64 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~-------~~~~~----------------------------~~ 64 (230)
.|...-+....|...+.++.++++++|++.|.+|-=+. +.+++ ..
T Consensus 118 ~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFID 197 (344)
T ss_pred CcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccC
Confidence 56666666656767788999999999999999983211 11111 11
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+...|+.++++++..++||++- +|.+.+|+..+.+ .|+|+|.++
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK-gv~~~~dA~~a~~-~G~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK-GVQTVEDAVLAAE-YGVDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE-cCCCHHHHHHHHH-cCCCEEEEE
Confidence 3367999999999999999986 7789999998875 899999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0033 Score=56.94 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
++|+ +.+-++.+++.. +.||.+-+..... ..+..++.+.++..+++++.+|--.........+..++ +.++.+
T Consensus 103 ~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i 181 (352)
T PRK05437 103 KDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEI 181 (352)
T ss_pred cChh-hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHH
Confidence 4677 777778888766 7898887665221 01123455566667899999996332111011123345 578888
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.+.+++..+.+ .|+|+|.++
T Consensus 182 ~~~~~vPVivK~~g~g~s~~~a~~l~~-~Gvd~I~Vs 217 (352)
T PRK05437 182 VSALPVPVIVKEVGFGISKETAKRLAD-AGVKAIDVA 217 (352)
T ss_pred HHhhCCCEEEEeCCCCCcHHHHHHHHH-cCCCEEEEC
Confidence 8888999996 666678888876664 899999773
|
|
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00027 Score=60.22 Aligned_cols=48 Identities=27% Similarity=0.538 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.++.++...++|++..|||+|.+.+.++.+ .|||.|.+|..+..||+
T Consensus 172 ~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~-aGAD~IVvGn~iee~~~ 219 (230)
T PF01884_consen 172 EVIAAVKKLSDIPLIVGGGIRSPEQAREMAE-AGADTIVVGNAIEEDPD 219 (230)
T ss_dssp HHHHHHHHSSSSEEEEESS--SHHHHHHHHC-TTSSEEEESCHHHHHH-
T ss_pred HHHHHHHhcCCccEEEeCCcCCHHHHHHHHH-CCCCEEEECCEEEEcch
Confidence 4445555566899999999999999999996 89999999999999998
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0034 Score=57.47 Aligned_cols=104 Identities=15% Similarity=0.257 Sum_probs=71.4
Q ss_pred HHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC---cC-CCCCcccHHHH----HHHHhhCCc
Q 026945 11 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---KD-GKKFRADWNAI----KAVKNALRI 81 (230)
Q Consensus 11 v~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---~~-~~~~~~~~~~i----~~i~~~~~i 81 (230)
+..+++.. ++||.+-+--+.+.+++.++++.++++|+|+|.+---.... +. +..-.-+.+.+ +.+++.+++
T Consensus 104 i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~i 183 (385)
T PLN02495 104 FKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATV 183 (385)
T ss_pred HHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcC
Confidence 45565555 67998887545677899999999999999999873211110 10 00001234555 555777789
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
||+ .+.++.+..++.+.+.+.|+|||.+---+.
T Consensus 184 Pv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 184 PVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred ceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 987 678888888888888789999997754443
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0055 Score=53.84 Aligned_cols=98 Identities=24% Similarity=0.369 Sum_probs=67.7
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCCCcccHHHHHHHHhhCCccEE-
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
+...++..+.|+.+-++. .+.++..+.++.++++|+|+|.+|-....... +..+..-.+.++.+++.+++||.
T Consensus 81 ~~~~~~~~~~p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~v 159 (296)
T cd04740 81 LLPWLREFGTPVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIV 159 (296)
T ss_pred HHHHhhcCCCcEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEE
Confidence 333444457899888874 45688999999999999999999865433211 11111234677888888889988
Q ss_pred -EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 85 -ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 -~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.++.+..++.+.+.+.|+|+|.+
T Consensus 160 Kl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 160 KLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred EeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 4566656666666677799999865
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0032 Score=56.99 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=65.6
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC-----------------------------C
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG-----------------------------K 63 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~-----------------------------~ 63 (230)
-|.+..+.+..|.+.+.+++++++++|+..|.+.- |.++.+++ .
T Consensus 125 ~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (351)
T cd04737 125 GPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAA 204 (351)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhhc
Confidence 45666666656767788999999999999887742 11111100 0
Q ss_pred CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 64 ~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+..+|+.++++++..++||++-| |.+++|+..+.+ .|+|+|.+
T Consensus 205 ~~~~~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~-~G~d~I~v 248 (351)
T cd04737 205 KQKLSPADIEFIAKISGLPVIVKG-IQSPEDADVAIN-AGADGIWV 248 (351)
T ss_pred cCCCCHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHH-cCCCEEEE
Confidence 123579999999999999999875 889999998886 89999988
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0059 Score=52.70 Aligned_cols=104 Identities=14% Similarity=0.261 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--c
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--I 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--i 81 (230)
.+.+.+++....+ .++-+-|-+. + ..++ +++.+.|+..|-|..|.-.. + ..|.+...++...++ .
T Consensus 142 ~~~l~el~~~A~~-LGm~~LVEVh---~---~eEl-~rAl~~ga~iIGINnRdL~t---f--~vdl~~t~~la~~~p~~~ 208 (254)
T COG0134 142 DEQLEELVDRAHE-LGMEVLVEVH---N---EEEL-ERALKLGAKIIGINNRDLTT---L--EVDLETTEKLAPLIPKDV 208 (254)
T ss_pred HHHHHHHHHHHHH-cCCeeEEEEC---C---HHHH-HHHHhCCCCEEEEeCCCcch---h--eecHHHHHHHHhhCCCCc
Confidence 4445555555533 4565555554 2 2233 34444999999999986542 1 567888888888764 7
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+|.-+||.|++|+..+.+ .|+||+.||.++|.+|..-.
T Consensus 209 ~~IsESGI~~~~dv~~l~~-~ga~a~LVG~slM~~~~~~~ 247 (254)
T COG0134 209 ILISESGISTPEDVRRLAK-AGADAFLVGEALMRADDPEE 247 (254)
T ss_pred EEEecCCCCCHHHHHHHHH-cCCCEEEecHHHhcCCCHHH
Confidence 7889999999999998886 89999999999999998744
|
|
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00013 Score=66.43 Aligned_cols=111 Identities=26% Similarity=0.367 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+..+..+.+..+...+.|+ +|+|+-.+..++..+++.+++.| .+.+|+|-...++.+ ++.|+.++.+-....+|+
T Consensus 314 ~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d~~~~~~~le~~~--~l~i~~r~~f~r~~~--pa~~~~~k~~l~~~~~~~ 388 (477)
T KOG2334|consen 314 AFEIEDIYATLKRELDTPV-CKKRLLVSPADTVNLAERLEDLS--ALAIHGRKIFDRPTD--PAKWDTPKMVLADLCVKT 388 (477)
T ss_pred HhcchhHHHhhHHhhcccc-ccceeeeCcchhhhHhhhHHhcc--chhhhhcccccccCC--CcCCCCHHHHHHHhhhhh
Confidence 3445566667777778888 99999887788999999999988 677888865444333 789999999888889999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+||.+....+. ...++.+||.+||...|-.+|..-
T Consensus 389 ~~~~~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~n 424 (477)
T KOG2334|consen 389 KANGPVYETVQR----TDKLFSSIATARGQKYNSSIWSPN 424 (477)
T ss_pred cCCCcchhhhhh----hhhhhHHHhhhhhhhhhccccCcc
Confidence 999999876664 236788999999999998888753
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.004 Score=56.96 Aligned_cols=43 Identities=14% Similarity=0.431 Sum_probs=38.2
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+|+.|+++++..++||++ .+|.|.+|+..+++ .|+|+|.++
T Consensus 231 ~ltW~di~~lr~~~~~pviv-KgV~s~~dA~~a~~-~Gvd~I~Vs 273 (381)
T PRK11197 231 SISWKDLEWIRDFWDGPMVI-KGILDPEDARDAVR-FGADGIVVS 273 (381)
T ss_pred CCCHHHHHHHHHhCCCCEEE-EecCCHHHHHHHHh-CCCCEEEEC
Confidence 45789999999999999988 77899999999997 899999874
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=54.02 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+....++|+|+|-+... .+...++++.++..+ ++|+++.||| +++++.++++ +|+++|.++..+.
T Consensus 110 ~~~A~~~Gad~i~~~p~---------~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~-~G~~~v~v~s~i~ 175 (190)
T cd00452 110 IMQALELGADIVKLFPA---------EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLA-AGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHCCCCEEEEcCC---------cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHH-CCCEEEEEchhcc
Confidence 45556899999998431 112457888888777 4999999999 8999999997 8999999999887
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0026 Score=57.50 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHhhcC---------CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 4 LPLVKSLVEKLALNL---------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---------~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
++.-.+.++.+++.. ...|.+-+.+. ++..+.++.|.++|+|.|.|..-.... ..-.+.++.
T Consensus 72 ~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~---~~~~er~~~L~~agvD~ivID~a~g~s------~~~~~~ik~ 142 (352)
T PF00478_consen 72 IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTR---DDDFERAEALVEAGVDVIVIDSAHGHS------EHVIDMIKK 142 (352)
T ss_dssp HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESS---TCHHHHHHHHHHTT-SEEEEE-SSTTS------HHHHHHHHH
T ss_pred HHHHHHHHhhhccccccccccccccceEEEEecCC---HHHHHHHHHHHHcCCCEEEccccCccH------HHHHHHHHH
Confidence 344556666665421 23344434332 345788889999999999997543221 123477899
Q ss_pred HHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 75 VKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 75 i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+++..+ +|||+ |+|-|.+-++.+++ +|||+|-+|=|
T Consensus 143 ik~~~~~~~via-GNV~T~e~a~~L~~-aGad~vkVGiG 179 (352)
T PF00478_consen 143 IKKKFPDVPVIA-GNVVTYEGAKDLID-AGADAVKVGIG 179 (352)
T ss_dssp HHHHSTTSEEEE-EEE-SHHHHHHHHH-TT-SEEEESSS
T ss_pred HHHhCCCceEEe-cccCCHHHHHHHHH-cCCCEEEEecc
Confidence 999886 88886 88999999999886 89999998854
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0044 Score=52.13 Aligned_cols=108 Identities=20% Similarity=0.283 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--CCCCC-----cccHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKF-----RADWNAIKAV 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--~~~~~-----~~~~~~i~~i 75 (230)
.+.+.++.+..++-+ ++|++|-+-=.-..++-++++..|+++|+|.|.--|.|.... .+..| .+.+.....+
T Consensus 102 a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaapTLAaay~I 181 (242)
T PF04481_consen 102 AEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAI 181 (242)
T ss_pred HHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHH
Confidence 455677777777766 688888765444567788999999999999999888775532 11111 1234556778
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+.+++||++.-|+.+.. +--.+. .||.||.+|.+.
T Consensus 182 Sr~v~iPVlcASGlS~vT-~PmAia-aGAsGVGVGSav 217 (242)
T PF04481_consen 182 SRAVSIPVLCASGLSAVT-APMAIA-AGASGVGVGSAV 217 (242)
T ss_pred HhccCCceEeccCcchhh-HHHHHH-cCCcccchhHHh
Confidence 888999999999996543 334454 799999999753
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=57.36 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.+.++.+.+..++||+.-+||.+++|+..+++ .|||||.+..|...
T Consensus 236 ~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame-lGadgVL~nSaIa~ 283 (326)
T PRK11840 236 QNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME-LGCDGVLMNTAIAE 283 (326)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEcceecc
Confidence 4889999999999999999999999999999997 89999999998764
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0065 Score=52.37 Aligned_cols=76 Identities=20% Similarity=0.333 Sum_probs=58.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++...++|++.|-|..|.-.. -..|.+...++...+ +..+|+-+||.|++|+..+.+ . +|||.||.++|.+
T Consensus 164 l~~a~~~ga~iiGINnRdL~t-----~~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l~~-~-~davLvG~~lm~~ 236 (247)
T PRK13957 164 AKLALDCGAEIIGINTRDLDT-----FQIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKFRK-L-VDAALIGTYFMEK 236 (247)
T ss_pred HHHHHhCCCCEEEEeCCCCcc-----ceECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHHHH-h-CCEEEECHHHhCC
Confidence 344556788888888776542 256777777787766 467788999999999999765 5 9999999999999
Q ss_pred Ccccc
Q 026945 117 PALFA 121 (230)
Q Consensus 117 P~lf~ 121 (230)
++.-.
T Consensus 237 ~d~~~ 241 (247)
T PRK13957 237 KDIRK 241 (247)
T ss_pred CCHHH
Confidence 88544
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0095 Score=50.09 Aligned_cols=108 Identities=15% Similarity=0.165 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+.+-+...++..++ .++-+-+-+=-.|+ ..+-++.+++.|++.+.+|-..-.|..|. ...|+.+..+++..+
T Consensus 91 ~~~TI~~~i~~A~~-~~~~v~iDl~~~~~---~~~~~~~l~~~gvd~~~~H~g~D~q~~G~--~~~~~~l~~ik~~~~~g 164 (217)
T COG0269 91 DDATIKKAIKVAKE-YGKEVQIDLIGVWD---PEQRAKWLKELGVDQVILHRGRDAQAAGK--SWGEDDLEKIKKLSDLG 164 (217)
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeecCCC---HHHHHHHHHHhCCCEEEEEecccHhhcCC--CccHHHHHHHHHhhccC
Confidence 34445555555544 35556665543344 44566777779999999996544443332 223677888888765
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+|-..||| +++++..+.. .|++.|.+||++-...+
T Consensus 165 ~~vAVaGGI-~~~~i~~~~~-~~~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGI-TPEDIPLFKG-IGADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCC-CHHHHHHHhc-CCCCEEEECchhcCCCC
Confidence 799999999 6999998776 78999999998765443
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=65.21 Aligned_cols=72 Identities=11% Similarity=0.162 Sum_probs=58.2
Q ss_pred CCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCC---ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 46 GCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 46 G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~---ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|+|++.+.+-..... .+..++..|+.++++++.++ +||++-||| +++++.++++ +|++||.+.++++..++.
T Consensus 128 gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~-~Ga~giAvisai~~a~d~ 203 (755)
T PRK09517 128 LPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAA-TGIDGLCVVSAIMAAANP 203 (755)
T ss_pred CCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEehHhhCCCCH
Confidence 599999987644322 22233568999999998887 999999999 7999999886 899999999999976663
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0058 Score=53.90 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=65.2
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcC-----CCCCcccHHHHHHHHhhCCccEEE--cC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKD-----GKKFRADWNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~-----~~~~~~~~~~i~~i~~~~~ipvi~--nG 87 (230)
+..+.|+.+-+. +.+.++..+.++.++++| +|+|.++.-...... ......-++.++.+++.+++||++ +.
T Consensus 88 ~~~~~p~i~si~-g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 88 EEFDTPIIANVA-GSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred hccCCcEEEEec-cCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 345789988885 456788999999999999 999998432211111 111223467788888888999885 45
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
++.+..++.+.+++.|+|++.+
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred CchhHHHHHHHHHHcCCCEEEE
Confidence 5656666667777899999865
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00059 Score=60.82 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
...++.+.+++.|+..|-+........ ....|.+.++.++..++||||++.|-.++++.++.++.|.||+..
T Consensus 442 gv~ELtrAcEalGAGEiLLNCiD~DGs---n~GyDieLv~lvkdsV~IPVIASSGAG~P~HFeEvF~kT~adAaL 513 (541)
T KOG0623|consen 442 GVFELTRACEALGAGEILLNCIDCDGS---NKGYDIELVKLVKDSVGIPVIASSGAGTPDHFEEVFEKTNADAAL 513 (541)
T ss_pred chhhHHHHHHHhCcchheeeeeccCCC---CCCcchhHHHHhhcccCCceEecCCCCCcHHHHHHHHhcCchhhh
Confidence 478999999999999999888766532 236799999999999999999999999999999999999999653
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0047 Score=52.04 Aligned_cols=104 Identities=10% Similarity=0.201 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------------- 60 (230)
++++++++.+++|+.|-+=+ .+...+++.+.++|++.|++|.-.....
T Consensus 48 ~~i~~l~~~t~~~~DvHLMv----~~P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 48 KTIQAVAQQTRHPLSFHLMV----SSPQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred HHHHHHHhcCCCCeEEEecc----CCHHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 46777777777787776643 3355788999999999999996421100
Q ss_pred ---------------CCCCCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 61 ---------------DGKKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 61 ---------------~~~~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+.|.. -++-|+++++.. ...+.+-|||+ .+.+..+.+ .|||.+.+|+++..+++
T Consensus 124 ~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~-aGad~~V~GsaiF~~~d 199 (210)
T PRK08005 124 YLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAA-AGAQHLVIGRALFTTAN 199 (210)
T ss_pred HHHHhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 0111211 123344444443 24688999995 788887775 89999999998876655
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0075 Score=54.14 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-----
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN----- 77 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~----- 77 (230)
++.+.++++... ..++-+-|-+. +.+ | ++++.++ |++.|-|..|.-... ..|.+...++..
T Consensus 216 ~~~L~~l~~~A~-~LGme~LVEVH---~~~---E-lerAl~~~ga~iIGINNRdL~Tf-----~vDl~~t~~L~~~~~~~ 282 (338)
T PLN02460 216 DLDIKYMLKICK-SLGMAALIEVH---DER---E-MDRVLGIEGVELIGINNRSLETF-----EVDISNTKKLLEGERGE 282 (338)
T ss_pred HHHHHHHHHHHH-HcCCeEEEEeC---CHH---H-HHHHHhcCCCCEEEEeCCCCCcc-----eECHHHHHHHhhhcccc
Confidence 344555555443 34666656554 212 2 3334455 999999999876532 567777777766
Q ss_pred hC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 78 AL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 78 ~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+ ++.+++-+||+|++|+..+.+ .|+|+|.||.++|..|+.-..+
T Consensus 283 ~i~~~~~~~VsESGI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp~~~l 330 (338)
T PLN02460 283 QIREKGIIVVGESGLFTPDDVAYVQN-AGVKAVLVGESLVKQDDPGKGI 330 (338)
T ss_pred ccCCCCeEEEECCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCCHHHHH
Confidence 22 355788899999999998876 8999999999999998864443
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=56.44 Aligned_cols=78 Identities=15% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHHHHHHHhhC-CccEEEcCC--CCCHHHHHHHHHhhCCcEEEEehh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNAL-RIPVLANGN--VRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~-~ipvi~nGg--I~s~~da~~~l~~~gadgVmigR~ 112 (230)
+-++.+.+.|+|+|.+.-.+.-..+.. ++..+++.++++++.+ ++|+++-|| | +.+++.++++ +|++.|-+++.
T Consensus 157 eea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~-~Gi~KiNv~T~ 234 (293)
T PRK07315 157 EDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIK-LGVAKVNVNTE 234 (293)
T ss_pred HHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHH-cCCCEEEEccH
Confidence 334555578999997753333211111 2358999999999999 599999999 8 5788988886 89999999998
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+..+
T Consensus 235 i~~~ 238 (293)
T PRK07315 235 CQIA 238 (293)
T ss_pred HHHH
Confidence 8863
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=58.49 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHH-HHHcCCCEEEEecCCCCC---c---CCCCCcccHHH-HH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDE---K---DGKKFRADWNA-IK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~-l~~~G~~~i~vh~rt~~~---~---~~~~~~~~~~~-i~ 73 (230)
.++-+..+|..+++.. ..+|+||+-.+.. ++.+.. +.++|+|.|+|.|-..-. . -.+.| .-|+. +.
T Consensus 286 sieDLaqlI~dLk~~~~~~~I~VKlva~~~----v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~G-iP~e~gla 360 (485)
T COG0069 286 SIEDLAQLIKDLKEANPWAKISVKLVAEHG----VGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAG-IPWELGLA 360 (485)
T ss_pred CHHHHHHHHHHHHhcCCCCeEEEEEecccc----hHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCC-chHHHHHH
Confidence 5778889999999875 4679999976443 222333 889999999998743211 0 00112 22443 23
Q ss_pred HHHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 74 AVKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 74 ~i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++-+.+ .+-|++.|+++|..|+..++. .|||.|-+|+++|----
T Consensus 361 e~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~a-LGAd~v~~gTa~lia~G 411 (485)
T COG0069 361 ETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAA-LGADAVGFGTAALVALG 411 (485)
T ss_pred HHHHHHHHcCCcceeEEEecCCccCHHHHHHHHH-hCcchhhhchHHHHHhh
Confidence 332221 478999999999999999997 89999999999875433
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0058 Score=55.64 Aligned_cols=88 Identities=16% Similarity=0.250 Sum_probs=63.4
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcCC----------------------------CCC
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKDG----------------------------KKF 65 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~~----------------------------~~~ 65 (230)
|...-+-+..|.+-+.+++++.+++|+..|.+.- |.++.+++ ..+
T Consensus 134 ~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (367)
T TIGR02708 134 PHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQ 213 (367)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhccccCC
Confidence 4444444444556678999999999999987741 11111100 012
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+|+.|+++++..++||++= ||.+.+|+..+.+ .|+|+|.++
T Consensus 214 ~~~w~~i~~l~~~~~~PvivK-Gv~~~eda~~a~~-~Gvd~I~VS 256 (367)
T TIGR02708 214 KLSPRDIEEIAGYSGLPVYVK-GPQCPEDADRALK-AGASGIWVT 256 (367)
T ss_pred CCCHHHHHHHHHhcCCCEEEe-CCCCHHHHHHHHH-cCcCEEEEC
Confidence 467999999999999999986 5889999999886 899998664
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0067 Score=54.53 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHhh-cCCceEEEEECCCCChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSCKIRVFPNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsvKiR~g~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
.+|+...+. +.+++ ..++|+.+-+....... ...++.+.++..+++++.+|--.........+..++ +.++.+
T Consensus 96 ~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i 174 (333)
T TIGR02151 96 KDPETADTF-EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEI 174 (333)
T ss_pred cChhhHhHH-HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHH
Confidence 477766666 77777 56899988765422111 144456666666889998886322111011122234 778889
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.+.+.+..+. +.|+|+|-++
T Consensus 175 ~~~~~vPVivK~~g~g~~~~~a~~L~-~aGvd~I~Vs 210 (333)
T TIGR02151 175 CSQLSVPVIVKEVGFGISKEVAKLLA-DAGVSAIDVA 210 (333)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 9999999986 56556888887655 5899999775
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0055 Score=55.63 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++++.+-..-+|+.+++.++++.+++.++.++. | .. .+.+++..+++++.+++
T Consensus 172 ~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~~~i 241 (368)
T cd03329 172 VRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALRLGRALEELGFFWYE-------D--PL-REASISSYRWLAEKLDI 241 (368)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHHHHHHhhhcCCCeEe-------C--CC-CchhHHHHHHHHhcCCC
Confidence 455678889998877 578888777788989999999999999888776 2 11 23478888999999999
Q ss_pred cEEEcCCCCC-HHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRH-MEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s-~~da~~~l~~~gadgVmi 109 (230)
||.+...+.+ ++++.++++...+|.|.+
T Consensus 242 pIa~~E~~~~~~~~~~~~i~~~a~d~v~~ 270 (368)
T cd03329 242 PILGTEHSRGALESRADWVLAGATDFLRA 270 (368)
T ss_pred CEEccCcccCcHHHHHHHHHhCCCCEEec
Confidence 9988888999 999999999777887766
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0072 Score=51.36 Aligned_cols=104 Identities=14% Similarity=0.331 Sum_probs=69.8
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
++++++++. +++|+.|-+=+ .+...+++.+.++|++.|++|.-.....
T Consensus 51 ~~i~~lr~~~~~~~~dvHLMv----~~P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i 126 (223)
T PRK08745 51 MVCQALRKHGITAPIDVHLMV----EPVDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDIL 126 (223)
T ss_pred HHHHHHHhhCCCCCEEEEecc----CCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHH
Confidence 567888876 58888887654 2356788999999999999996421100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|+.|.. .++-++++++. .++.|-+-|||+ .+.+..+.+ .|+|.+++|+++..
T Consensus 127 ~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~-aGaDi~V~GSaiF~ 204 (223)
T PRK08745 127 DWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAA-AGADTFVAGSAIFN 204 (223)
T ss_pred HHHHhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHH-cCCCEEEEChhhhC
Confidence 1121211 23344555443 246688999995 788887775 89999999998765
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 205 ~~d 207 (223)
T PRK08745 205 APD 207 (223)
T ss_pred CCC
Confidence 544
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.01 Score=51.90 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=67.2
Q ss_pred HHHHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC----CCCcccHHHHHHHHhhCCc
Q 026945 7 VKSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG----KKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 7 ~~eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~----~~~~~~~~~i~~i~~~~~i 81 (230)
..+-+...++. .+.|+.+-++. .+.++..+.++.++++|+++|.++........+ ..+..-.+.++.+++.+++
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g-~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~ 163 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGG-SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDI 163 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEecc-CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCC
Confidence 33334444444 57899888864 456789999999999999999998654432111 0111124567788888889
Q ss_pred cEEE--cCCCC--CHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLA--NGNVR--HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~--nGgI~--s~~da~~~l~~~gadgVmig 110 (230)
||++ ++++. ...++.+.+++.|+|+|.+.
T Consensus 164 pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 164 PLLVKLSPYFDLEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 9874 45543 23344455667899999875
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0035 Score=55.21 Aligned_cols=75 Identities=16% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC--CCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN--VRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg--I~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.+++.|+|+|.++-.|.-.++...++.+++.++++++.+++|+++-|| |. .+++.++.+ .|++.|-+++.+..
T Consensus 162 ~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~~PLVlHGGSgi~-~e~~~~~i~-~Gi~KINv~T~~~~ 238 (286)
T PRK06801 162 RDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGIS-DADFRRAIE-LGIHKINFYTGMSQ 238 (286)
T ss_pred HHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCC-HHHHHHHHH-cCCcEEEehhHHHH
Confidence 33344789999999655554433223357999999999999999999998 74 678888886 89999999886643
|
|
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0088 Score=52.14 Aligned_cols=81 Identities=16% Similarity=0.327 Sum_probs=55.6
Q ss_pred HHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEE
Q 026945 10 LVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLA 85 (230)
Q Consensus 10 iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~ 85 (230)
-++.+++..+ .+|.+-++ +.+-+..+.++|+|+|-+-+. ..+.++++.+.++ +|+++
T Consensus 167 av~~~r~~~~~~~~Igvev~-------t~eea~~A~~~gaDyI~ld~~------------~~e~lk~~v~~~~~~ipi~A 227 (265)
T TIGR00078 167 AVKRARAAAPFALKIEVEVE-------SLEEAEEAAEAGADIIMLDNM------------KPEEIKEAVQLLKGRVLLEA 227 (265)
T ss_pred HHHHHHHhCCCCCeEEEEeC-------CHHHHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhcCCCcEEE
Confidence 3555555442 44554443 234466667899999988432 2255666655443 89999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.||| +.+.+.++.+ +|+|++.+|.
T Consensus 228 sGGI-~~~ni~~~a~-~Gvd~Isvga 251 (265)
T TIGR00078 228 SGGI-TLDNLEEYAE-TGVDVISSGA 251 (265)
T ss_pred ECCC-CHHHHHHHHH-cCCCEEEeCH
Confidence 9999 6999998886 9999999954
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0027 Score=51.82 Aligned_cols=84 Identities=19% Similarity=0.371 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH-HhhC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV-KNAL 79 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i-~~~~ 79 (230)
|.||.++.+|.+++ .+||..|.|+|.- --|+.|+..|+|+|.=+--. -|+|... .| |..+
T Consensus 57 MsDP~~I~eI~~aV----sIPVMAK~RIGHf-----vEAqiLealgVD~IDESEVL--------TpAD~~~--HI~K~~F 117 (208)
T PF01680_consen 57 MSDPKMIKEIMDAV----SIPVMAKVRIGHF-----VEAQILEALGVDYIDESEVL--------TPADEEN--HIDKHNF 117 (208)
T ss_dssp S--HHHHHHHHHH-----SSEEEEEEETT-H-----HHHHHHHHTT-SEEEEETTS----------S-SS------GGG-
T ss_pred cCCHHHHHHHHHhe----Eeceeecccccee-----ehhhhHHHhCCceecccccc--------ccccccc--cccchhC
Confidence 77898877776655 8999999999863 23789999999999855421 1333221 22 3457
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
++|+++ |.++.-.+.+.+. -||..
T Consensus 118 ~vPFVc--GarnLGEALRRI~-EGAaM 141 (208)
T PF01680_consen 118 KVPFVC--GARNLGEALRRIA-EGAAM 141 (208)
T ss_dssp SS-EEE--EESSHHHHHHHHH-TT-SE
T ss_pred CCCeEe--cCCCHHHHHhhHH-hhhhh
Confidence 899886 4567777777776 46653
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0062 Score=51.43 Aligned_cols=104 Identities=15% Similarity=0.369 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--------------------------C---
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------E--- 59 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--------------------------~--- 59 (230)
.+++++++.+..|+.|-+=+ ++...+++.+.++|+++|++|.-... .
T Consensus 51 ~~v~~l~~~t~~p~DvHLMV----~~p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 51 PVVKALRKITDLPLDVHLMV----ENPDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALE 126 (220)
T ss_pred HHHHHHhhcCCCceEEEEec----CCHHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHH
Confidence 57888888778898888754 34568899999999999999953110 0
Q ss_pred --------------cCCCCCc----ccHHHHHHHHhhCC----ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 60 --------------KDGKKFR----ADWNAIKAVKNALR----IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 60 --------------~~~~~~~----~~~~~i~~i~~~~~----ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.+|+.|. .-.+-++++++..+ +-+-.-||| +.+.+..+.+ .|+|-+++|+++..++
T Consensus 127 ~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~-AGad~~VaGSalF~~~ 204 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAA-AGADVFVAGSALFGAD 204 (220)
T ss_pred HHHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHH-cCCCEEEEEEEEeCCc
Confidence 0122222 12344555555433 456788999 4677777665 8999999999888888
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
+
T Consensus 205 d 205 (220)
T COG0036 205 D 205 (220)
T ss_pred c
Confidence 8
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.016 Score=50.42 Aligned_cols=100 Identities=13% Similarity=0.257 Sum_probs=69.2
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE-ecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc-C
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN-G 87 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v-h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n-G 87 (230)
+++++. ..+.||.+|.-...+.++....++.+.+.|..-|.+ |..+..-.......+|+..+..+++..++||+.+ +
T Consensus 124 LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 124 LLKEVG-KQGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred HHHHHh-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCC
Confidence 455553 358999999988777888999999999999865555 6434321011123579999999999889999993 3
Q ss_pred CCCC-----HHHHHHHHHhhCCcEEEEeh
Q 026945 88 NVRH-----MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 88 gI~s-----~~da~~~l~~~gadgVmigR 111 (230)
-... +.-+..+.. .|+||+||=+
T Consensus 203 Hs~G~r~~~~~~~~aAva-~Ga~gl~iE~ 230 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIA-AGADGLMIEV 230 (260)
T ss_pred CCCCccchHHHHHHHHHH-cCCCEEEEEe
Confidence 2222 344445554 7999998854
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=51.98 Aligned_cols=68 Identities=15% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+-++...+.|+|+|.+- ....+.++++++.++ +|+.+.||| +.+.+.++.+ +|+|+|.+|.-..
T Consensus 199 eea~~A~~~gaDyI~lD------------~~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~-~Gvd~IAvg~l~~ 264 (277)
T PRK08072 199 EQVREAVAAGADIIMFD------------NRTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGG-TGVDYISLGFLTH 264 (277)
T ss_pred HHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-cCCCEEEEChhhc
Confidence 33555668999999882 123377777777654 788899999 7999999886 9999999997444
Q ss_pred hCCc
Q 026945 115 ENPA 118 (230)
Q Consensus 115 ~nP~ 118 (230)
.-|+
T Consensus 265 sa~~ 268 (277)
T PRK08072 265 SVKA 268 (277)
T ss_pred CCcc
Confidence 3344
|
|
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.007 Score=52.45 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C-CChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g-~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-+.++++.++-++.+|+=+ + .+.+ +....++.+.++|+|+|-=+... ..+++..+.++.+++.
T Consensus 113 ~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf------~~~gAt~edv~lm~~~ 186 (257)
T PRK05283 113 NEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK------VPVNATLEAARIMLEV 186 (257)
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCC------CCCCCCHHHHHHHHHH
Confidence 56778888888888654234455433 2 2334 46788999999999999733221 1235667777776665
Q ss_pred C-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 79 L-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 79 ~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+ ++-|=++|||+|.+++.++++ . |+-.|++-|+
T Consensus 187 i~~~~~~~~vgIKAsGGIrt~~~A~~~i~-a-------g~~~lg~~~~ 226 (257)
T PRK05283 187 IRDMGVAKTVGFKPAGGVRTAEDAAQYLA-L-------ADEILGADWA 226 (257)
T ss_pred HHhcccCCCeeEEccCCCCCHHHHHHHHH-H-------HHHHhChhhc
Confidence 4 377889999999999999997 3 4455666554
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.015 Score=50.53 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.++++++..++||++.=||++++++.++. .|+|||.+|.+++.
T Consensus 187 ~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~--~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 187 KEFIKRIKKHTDLPVAVGFGISTPEQAKKLA--AGADGVIVGSAFVK 231 (259)
T ss_dssp HHHHHHHHHTTSS-EEEESSS-SHHHHHHHH--TTSSEEEESHHHHH
T ss_pred HHHHHHHHhhcCcceEEecCCCCHHHHHHHH--ccCCEEEECHHHHH
Confidence 4678889999999999988999999999877 59999999998764
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.011 Score=53.78 Aligned_cols=42 Identities=24% Similarity=0.649 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..|+.|+.+++..+.|||+-| |.+++|+..+.+ .|+|+|.++
T Consensus 223 ~~w~~i~~ir~~~~~pviiKg-V~~~eda~~a~~-~G~d~I~VS 264 (361)
T cd04736 223 FNWQDLRWLRDLWPHKLLVKG-IVTAEDAKRCIE-LGADGVILS 264 (361)
T ss_pred CCHHHHHHHHHhCCCCEEEec-CCCHHHHHHHHH-CCcCEEEEC
Confidence 578999999999999999975 999999999997 899999874
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.02 Score=49.45 Aligned_cols=100 Identities=14% Similarity=0.285 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ .+.||.+|.-...+.++....++.+.+.|...| .+|-.+..-...+....|...+..+++..++||+..
T Consensus 113 ~LL~~va~-tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~ 191 (250)
T PRK13397 113 EFLKTLSH-IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDV 191 (250)
T ss_pred HHHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECC
Confidence 34555544 489999999877888899999999999998544 556223221111111568888999999889999885
Q ss_pred ---CCCCC--HHHHHHHHHhhCCcEEEEe
Q 026945 87 ---GNVRH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 ---GgI~s--~~da~~~l~~~gadgVmig 110 (230)
+|.+. +.-+..++. .||||+||=
T Consensus 192 SHs~G~r~~v~~~a~AAvA-~GAdGl~IE 219 (250)
T PRK13397 192 SHSTGRRDLLLPAAKIAKA-VGANGIMME 219 (250)
T ss_pred CCCCcccchHHHHHHHHHH-hCCCEEEEE
Confidence 34332 233445554 799999984
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.013 Score=51.25 Aligned_cols=89 Identities=18% Similarity=0.315 Sum_probs=56.5
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC----Ccc
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL----RIP 82 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~----~ip 82 (230)
.-++.+++... .+|.+-++ +. +-+....++|+|+|-+-..+. +.++++.+.+ ++|
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~---t~----eea~~A~~~gaD~I~ld~~~~------------e~l~~~v~~i~~~~~i~ 229 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVE---TL----EEAEEALEAGADIIMLDNMSP------------EELKEAVKLLKGLPRVL 229 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecC---CH----HHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhccCCCeE
Confidence 34556666542 34444433 22 224444578999999844322 4444443333 789
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+.||| +++.+.++.+ +|+|+|.+|.-...-|+
T Consensus 230 i~asGGI-t~~ni~~~a~-~Gad~Isvgal~~s~~~ 263 (269)
T cd01568 230 LEASGGI-TLENIRAYAE-TGVDVISTGALTHSAPA 263 (269)
T ss_pred EEEECCC-CHHHHHHHHH-cCCCEEEEcHHHcCCCc
Confidence 9999999 6899998886 99999999755444444
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.016 Score=50.49 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=68.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE-EecCCCCCcCCC-CCcccHHHHHHHHhhCCccEEEc-
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-VHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~-vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
+++++ ...+.||.+|.-...+.++....++.+...|...++ +|..++.. ..| ....|+..+..+++..+.||+..
T Consensus 126 LL~~~-a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~-~~Y~~~~vdl~~i~~lk~~~~~pV~~D~ 203 (266)
T PRK13398 126 LLKEV-GKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTF-ETYTRNTLDLAAVAVIKELSHLPIIVDP 203 (266)
T ss_pred HHHHH-hcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCC-CCCCHHHHHHHHHHHHHhccCCCEEEeC
Confidence 45555 356899999998877788888889999999986544 45433221 122 22458888999998889999983
Q ss_pred CCCCC-----HHHHHHHHHhhCCcEEEEeh
Q 026945 87 GNVRH-----MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 GgI~s-----~~da~~~l~~~gadgVmigR 111 (230)
.--.. +..+...+. .||||+||=+
T Consensus 204 sHs~G~~~~v~~~~~aAva-~Ga~Gl~iE~ 232 (266)
T PRK13398 204 SHATGRRELVIPMAKAAIA-AGADGLMIEV 232 (266)
T ss_pred CCcccchhhHHHHHHHHHH-cCCCEEEEec
Confidence 32233 455556664 7999999854
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=50.95 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+-+..+.++|+|+|-+-+. ..+.++++.+.. ++|+.+.||| +++.+.++.+ +|+|++.+|.-..
T Consensus 193 eea~~A~~~gaDyI~ld~~------------~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~-~Gvd~Iav~sl~~ 258 (268)
T cd01572 193 EQLKEALEAGADIIMLDNM------------SPEELREAVALLKGRVLLEASGGI-TLENIRAYAE-TGVDYISVGALTH 258 (268)
T ss_pred HHHHHHHHcCCCEEEECCc------------CHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEEeeec
Confidence 3355566899999988432 246777776665 5999999999 6999998886 9999999997443
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.016 Score=53.17 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhcCCceEEE-EECCCCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHHhh-CCc
Q 026945 5 PLVKSLVEKLALNLNVPVSC-KIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKNA-LRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsv-KiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~~~-~~i 81 (230)
+.+.+.++++++. ++-+.+ =+.. .+..+.++.+ ..++|.+.+|. .... +. ..-|+-++++++. .++
T Consensus 263 ~ti~~ai~~akk~-GikvgVD~lnp----~tp~e~i~~l-~~~vD~Vllht~vdp~---~~--~~~~~kI~~ikk~~~~~ 331 (391)
T PRK13307 263 STIEKAIHEAQKT-GIYSILDMLNV----EDPVKLLESL-KVKPDVVELHRGIDEE---GT--EHAWGNIKEIKKAGGKI 331 (391)
T ss_pred HHHHHHHHHHHHc-CCEEEEEEcCC----CCHHHHHHHh-hCCCCEEEEccccCCC---cc--cchHHHHHHHHHhCCCC
Confidence 3456667777664 444444 2332 2344566666 67999999995 3322 11 3357788888874 478
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|.+.|||+ .+++.++++ .|+|.+.+||++...++
T Consensus 332 ~I~VdGGI~-~eti~~l~~-aGADivVVGsaIf~a~D 366 (391)
T PRK13307 332 LVAVAGGVR-VENVEEALK-AGADILVVGRAITKSKD 366 (391)
T ss_pred cEEEECCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 999999997 889988886 89999999999876555
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.032 Score=48.51 Aligned_cols=111 Identities=19% Similarity=0.257 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHhhc-CCceEEEEECCC------------------------CC--hHHHHHHHHHHHHcCCCEEEEecC
Q 026945 3 NLPLVKSLVEKLALN-LNVPVSCKIRVF------------------------PN--LQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~~~pvsvKiR~g------------------------~~--~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
.++.+.++++.+++. .++|+.+=.-.. +| .++..++.+.+++.|++.|.+..-
T Consensus 77 t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaP 156 (265)
T COG0159 77 TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAP 156 (265)
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCC
Confidence 356788999999854 678887643221 11 234445666666677777666543
Q ss_pred CCCCc------------------CCCCC---c---ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 56 TRDEK------------------DGKKF---R---ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 56 t~~~~------------------~~~~~---~---~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|.... .+.+| + .--+.++++++..++||+..=||++++++.++.+ . ||||.+|.
T Consensus 157 tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGFGIs~~e~~~~v~~-~-ADGVIVGS 234 (265)
T COG0159 157 TTPDERLKKIAEAASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPVLVGFGISSPEQAAQVAE-A-ADGVIVGS 234 (265)
T ss_pred CCCHHHHHHHHHhCCCcEEEEecccccCCCcccchhHHHHHHHHHHhcCCCeEEecCcCCHHHHHHHHH-h-CCeEEEcH
Confidence 32210 11112 1 1246788899989999999889999999999997 5 99999999
Q ss_pred hhhh
Q 026945 112 SLLE 115 (230)
Q Consensus 112 ~~l~ 115 (230)
+++.
T Consensus 235 AiV~ 238 (265)
T COG0159 235 AIVK 238 (265)
T ss_pred HHHH
Confidence 8764
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.016 Score=52.01 Aligned_cols=98 Identities=14% Similarity=0.114 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++.+......-+++ .+|.. ++..+.++.|.++| +|+|+|..-. +++ ..-.+.++++++..+
T Consensus 79 ~~e~~~~~v~~~~~~~~~~~~v--svG~~-~~d~er~~~L~~a~~~~d~iviD~Ah-----Ghs-~~~i~~ik~ir~~~p 149 (343)
T TIGR01305 79 SVDEWKAFATNSSPDCLQNVAV--SSGSS-DNDLEKMTSILEAVPQLKFICLDVAN-----GYS-EHFVEFVKLVREAFP 149 (343)
T ss_pred CHHHHHHHHHhhcccccceEEE--EeccC-HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHhhCC
Confidence 3444455555544333222333 22222 44567788888875 9999985432 111 223578999999887
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
-+.+..|+|-|++++..+++ .|||+|-+|
T Consensus 150 ~~~viaGNV~T~e~a~~Li~-aGAD~ikVg 178 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELIL-SGADIVKVG 178 (343)
T ss_pred CCeEEEecccCHHHHHHHHH-cCCCEEEEc
Confidence 77777799999999999886 899999776
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.015 Score=51.21 Aligned_cols=94 Identities=15% Similarity=0.322 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH-HHHHHHh-hCCccE
Q 026945 8 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKN-ALRIPV 83 (230)
Q Consensus 8 ~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~-~i~~i~~-~~~ipv 83 (230)
.+.++.+++..+ .+|.|-++ +.+-+..+.++|+|+|-+-.-+ +-++. .+..+++ .-++|+
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~-------tleea~eA~~~GaD~I~LDn~~---------~e~l~~av~~~~~~~~~i~l 246 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETE-------TLEQVQEALEYGADIIMLDNMP---------VDLMQQAVQLIRQQNPRVKI 246 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECC-------CHHHHHHHHHcCCCEEEECCCC---------HHHHHHHHHHHHhcCCCeEE
Confidence 345555555543 33333333 2333445558999999986322 21222 2222332 346899
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.++||| +.+.+.++.+ +|+|+|.+|.....-|++
T Consensus 247 eAsGGI-t~~ni~~ya~-tGvD~Isvgsl~~sa~~~ 280 (288)
T PRK07428 247 EASGNI-TLETIRAVAE-TGVDYISSSAPITRSPWL 280 (288)
T ss_pred EEECCC-CHHHHHHHHH-cCCCEEEEchhhhCCCcc
Confidence 999999 6999998885 999999999977756654
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.018 Score=51.56 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHHhhcCC-ceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH----HHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN-VPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW----NAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~-~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~----~~i~~i 75 (230)
.+|+.. +-++.+++... .|+.+-+-.... ..+..++.+.++..+++++.+|--.........+.-++ +.++.+
T Consensus 95 ~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l 173 (326)
T cd02811 95 EDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEEL 173 (326)
T ss_pred cChhhh-hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHH
Confidence 467755 66677776654 888776654210 01234455566667899999986321110011123345 568888
Q ss_pred HhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 76 KNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+++||++ +|.-.|.+++..+. +.|+|+|.++
T Consensus 174 ~~~~~vPVivK~~g~g~s~~~a~~l~-~~Gvd~I~vs 209 (326)
T cd02811 174 VKALSVPVIVKEVGFGISRETAKRLA-DAGVKAIDVA 209 (326)
T ss_pred HHhcCCCEEEEecCCCCCHHHHHHHH-HcCCCEEEEC
Confidence 8888999996 56557888887665 5999999874
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.016 Score=50.12 Aligned_cols=98 Identities=17% Similarity=0.313 Sum_probs=71.6
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC---CCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC-CCCH
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPVLANGN-VRHM 92 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg-I~s~ 92 (230)
+.+.||-.|--++-+.++++.-|+.+...|-..+.+--| |.+. .+....|...+..+|+...+|||++-. -...
T Consensus 150 ~~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~--~TRntLDi~aV~~~kq~THLPVivDpSH~~Gr 227 (286)
T COG2876 150 RQNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEK--ATRNTLDISAVPILKQETHLPVIVDPSHATGR 227 (286)
T ss_pred ccCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecccccccc--cccceechHHHHHHHhhcCCCEEECCCCcccc
Confidence 358999999999889999999999999999988887654 4442 233367999999999999999997632 1122
Q ss_pred HHH-----HHHHHhhCCcEEEEehhhhhCCcc
Q 026945 93 EDV-----QKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 93 ~da-----~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.+. ...+. .||||+|+= .-.||..
T Consensus 228 r~lv~pla~AA~A-aGAdglmiE--VHp~P~~ 256 (286)
T COG2876 228 RDLVEPLAKAAIA-AGADGLMIE--VHPDPEK 256 (286)
T ss_pred hhhHHHHHHHHHh-ccCCeeEEE--ecCCccc
Confidence 222 23333 799999993 4455554
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.019 Score=53.78 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Cc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~i 81 (230)
++.+.++++...+ .++-+.|-++ +. +-++...++|++.|-|..|.-... ..|.+...++...+ ++
T Consensus 145 ~~~l~~l~~~a~~-lGl~~lvEvh---~~----~El~~al~~~a~iiGiNnRdL~t~-----~vd~~~~~~l~~~ip~~~ 211 (454)
T PRK09427 145 DEQYRQLAAVAHS-LNMGVLTEVS---NE----EELERAIALGAKVIGINNRNLRDL-----SIDLNRTRELAPLIPADV 211 (454)
T ss_pred HHHHHHHHHHHHH-cCCcEEEEEC---CH----HHHHHHHhCCCCEEEEeCCCCccc-----eECHHHHHHHHhhCCCCc
Confidence 4455566555533 4555556555 21 224455677999999988876532 46777777777766 46
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+|+-+||.|++|+..+. . |+|+|.||.++|.+|+.-..+
T Consensus 212 ~~vseSGI~t~~d~~~~~-~-~~davLiG~~lm~~~d~~~~~ 251 (454)
T PRK09427 212 IVISESGIYTHAQVRELS-P-FANGFLIGSSLMAEDDLELAV 251 (454)
T ss_pred EEEEeCCCCCHHHHHHHH-h-cCCEEEECHHHcCCCCHHHHH
Confidence 788899999999999864 3 699999999999999865443
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.008 Score=50.74 Aligned_cols=64 Identities=22% Similarity=0.346 Sum_probs=51.6
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
....++|+|+|-+.+.. ....++++.++..++ +|+++.||| +.+++.+.++ .|+++|.+|..++
T Consensus 123 ~~A~~~Gad~vklFPa~---------~~G~~~ik~l~~~~p~ip~~atGGI-~~~N~~~~l~-aGa~~vavgs~l~ 187 (213)
T PRK06552 123 VTALEAGSEIVKLFPGS---------TLGPSFIKAIKGPLPQVNVMVTGGV-NLDNVKDWFA-AGADAVGIGGELN 187 (213)
T ss_pred HHHHHcCCCEEEECCcc---------cCCHHHHHHHhhhCCCCEEEEECCC-CHHHHHHHHH-CCCcEEEEchHHh
Confidence 44457999999985421 122477899988876 999999999 4899999997 8999999999885
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.019 Score=50.33 Aligned_cols=92 Identities=16% Similarity=0.298 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-----C
Q 026945 7 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----L 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~ 79 (230)
+.+.++.+++... .+|.|=++ +.+-++.+.++|+|.|-+-. .+.+.++++.+. .
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~-------tleea~~A~~~GaDiI~LDn------------~~~e~l~~~v~~~~~~~~ 228 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECE-------SLEEAKNAMNAGADIVMCDN------------MSVEEIKEVVAYRNANYP 228 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeC-------CHHHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhhccCC
Confidence 4566777776653 45666444 34456666789999888532 234555555443 2
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++.+.++||| +++.+.++.+ +|+|.|.+|.....-|++
T Consensus 229 ~~~ieAsGgI-t~~ni~~ya~-~GvD~IsvG~l~~sa~~~ 266 (273)
T PRK05848 229 HVLLEASGNI-TLENINAYAK-SGVDAISSGSLIHQATWI 266 (273)
T ss_pred CeEEEEECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCcc
Confidence 4669999999 9999999886 999999999865544443
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0064 Score=51.81 Aligned_cols=71 Identities=25% Similarity=0.347 Sum_probs=57.9
Q ss_pred HHHHHHHH-HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 34 DTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 34 ~~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.++- ++..++|.++++|.+.. .++|.+.++.+++..++||+++-|+ +++.+...++. |||+.+|..
T Consensus 164 ~~~~~v~dtver~~aDaVI~tG~~TG------~~~d~~el~~a~~~~~~pvlvGSGv-~~eN~~~~l~~--adG~IvgT~ 234 (263)
T COG0434 164 SLEEAVKDTVERGLADAVIVTGSRTG------SPPDLEELKLAKEAVDTPVLVGSGV-NPENIEELLKI--ADGVIVGTS 234 (263)
T ss_pred CHHHHHHHHHHccCCCEEEEecccCC------CCCCHHHHHHHHhccCCCEEEecCC-CHHHHHHHHHH--cCceEEEEE
Confidence 34455554 77788999999996432 2679999999999999999999999 69999999984 999999974
Q ss_pred h
Q 026945 113 L 113 (230)
Q Consensus 113 ~ 113 (230)
+
T Consensus 235 l 235 (263)
T COG0434 235 L 235 (263)
T ss_pred E
Confidence 4
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0099 Score=51.24 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|+++|.|-.-... + .-+++.++.+++.+++||+..+.|-++.++.+... .|||+|.+-=+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~~----F--~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~-~GADavLLI~~ 133 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSY----F--GGSLEDLKSVSSELKIPVLRKDFILDEIQIREARA-FGASAILLIVR 133 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCCc----C--CCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHH-cCCCEEEeEHh
Confidence 36789999999999999988653211 2 23689999999999999999999999999999987 89999976555
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 134 ~L~ 136 (247)
T PRK13957 134 ILT 136 (247)
T ss_pred hCC
Confidence 554
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=52.52 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.++.+.++.|.++|+|.|.|-.-.. . +..-.+.++++++.. +++|++ |+|.|++++..+++ .|+|+|.+|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g-----~-~~~~~~~v~~ik~~~p~~~vi~-g~V~T~e~a~~l~~-aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHG-----H-STRIIELVKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC-----C-ChhHHHHHHHHHhhCCCCcEEE-EecCCHHHHHHHHH-cCCCEEEEC
Confidence 4578899999999999999854321 1 123468899999877 467555 99999999999886 899999876
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.031 Score=50.84 Aligned_cols=107 Identities=21% Similarity=0.320 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEe-cCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+++++.+ .+.||.+|.-...+.++....++.+.+.|.. .+.+| |-+..... .....|+..+..+++..++||+.+
T Consensus 216 ~LL~~~a~-~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~-~~~~ldl~~i~~lk~~~~~PV~~d 293 (360)
T PRK12595 216 ELLKAAGR-VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKA-TRNTLDISAVPILKQETHLPVMVD 293 (360)
T ss_pred HHHHHHHc-cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCC-CCCCcCHHHHHHHHHHhCCCEEEe
Confidence 34555543 5899999998877888899999999999985 55555 43221111 123469999999999899999995
Q ss_pred CCCCC----HH--HHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 87 GNVRH----ME--DVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 87 GgI~s----~~--da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
-+=.. .. -+..++. .||||+||=+=. ||...
T Consensus 294 ~~Hs~G~r~~~~~~a~aAva-~GAdg~~iE~H~--dp~~a 330 (360)
T PRK12595 294 VTHSTGRRDLLLPTAKAALA-IGADGVMAEVHP--DPAVA 330 (360)
T ss_pred CCCCCcchhhHHHHHHHHHH-cCCCeEEEEecC--CCCCC
Confidence 33211 11 3334454 799999997755 66543
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.037 Score=47.59 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc---cc----HHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR---AD----WNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~---~~----~~~i~~ 74 (230)
..+.+.+.++.|...+++||.+-+..|. +..+..+.++.+.++|++.|.+-+.+...+.+..+. .. .+.|+.
T Consensus 53 ~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~a 132 (243)
T cd00377 53 TLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKA 132 (243)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHH
Confidence 3466777888888888999999999875 446788889999999999999966544332221111 11 223343
Q ss_pred HHhhC----CccEEEcCCC-----CCHHHHHHHH---HhhCCcEEEEe
Q 026945 75 VKNAL----RIPVLANGNV-----RHMEDVQKCL---EETGCEGVLSA 110 (230)
Q Consensus 75 i~~~~----~ipvi~nGgI-----~s~~da~~~l---~~~gadgVmig 110 (230)
+++.. +++|++--|. .+.+++.+.. .+.|||+|++=
T Consensus 133 a~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 133 ARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred HHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 44432 4666665222 3455555333 34899999983
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.016 Score=52.31 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=74.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-- 78 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+..+++++++.+++.++.++. | .. ++-|++..+++++.
T Consensus 164 ~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~~E-------e--P~-~~~d~~~~~~l~~~~~ 233 (352)
T cd03328 164 DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEGVTWFE-------E--PV-SSDDLAGLRLVRERGP 233 (352)
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHhCcchhh-------C--CC-ChhhHHHHHHHHhhCC
Confidence 3555667788888776 356666666678888888888888888776664 2 11 23478999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.+..++.++++...+|.|.+
T Consensus 234 ~~iPIa~gE~~~~~~~~~~li~~~a~div~~ 264 (352)
T cd03328 234 AGMDIAAGEYAYTLAYFRRLLEAHAVDVLQA 264 (352)
T ss_pred CCCCEEecccccCHHHHHHHHHcCCCCEEec
Confidence 8899999778999999999998666787754
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0079 Score=54.61 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=63.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcC------------------------------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKD------------------------------ 61 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~------------------------------ 61 (230)
..|...-+-...+.+.+.+.+++++++|++.|.||- |.+..++
T Consensus 109 ~~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (356)
T PF01070_consen 109 GGPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENN 188 (356)
T ss_dssp TSEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG----
T ss_pred cCCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCccccccccccc
Confidence 345555554445667788999999999999999982 1000000
Q ss_pred ------------------CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 ------------------GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 ------------------~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+..+|+.|+++++..++|||.=|= .+++|+..+.+ .|+|+|.++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv-~~~~da~~~~~-~G~~~i~vs 253 (356)
T PF01070_consen 189 EAPPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGV-LSPEDAKRAVD-AGVDGIDVS 253 (356)
T ss_dssp -CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE--SHHHHHHHHH-TT-SEEEEE
T ss_pred ccccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEec-ccHHHHHHHHh-cCCCEEEec
Confidence 011345799999999999999998654 79999999886 899999886
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.025 Score=49.66 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=50.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+..+.++|+|+|-+- ....+.++++.+.. ++|+.++||| +.+.+.++.+ +|+|+|.+|.-.
T Consensus 199 leea~eA~~~gaD~I~LD------------~~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~-tGvD~Isvg~lt 264 (277)
T PRK05742 199 LDELRQALAAGADIVMLD------------ELSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAE-TGVDYISIGAMT 264 (277)
T ss_pred HHHHHHHHHcCCCEEEEC------------CCCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHH-cCCCEEEEChhh
Confidence 344566668999999762 12345666666555 7999999999 6999998886 999999999754
Q ss_pred hhCCcc
Q 026945 114 LENPAL 119 (230)
Q Consensus 114 l~nP~l 119 (230)
..-|++
T Consensus 265 ~s~~~~ 270 (277)
T PRK05742 265 KDVKAV 270 (277)
T ss_pred cCCccc
Confidence 444443
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.035 Score=50.02 Aligned_cols=94 Identities=16% Similarity=0.233 Sum_probs=65.3
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC----CCC
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN----VRH 91 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg----I~s 91 (230)
.++.||.+|.-...+.++....++.+...|...+ .+|..++.-........|+..+..+++..+.||++.-+ .+.
T Consensus 198 ~~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~ 277 (335)
T PRK08673 198 KTNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRD 277 (335)
T ss_pred cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCcccc
Confidence 3589999999887778888889999999998654 44532322101112357899999999988999977432 211
Q ss_pred --HHHHHHHHHhhCCcEEEEeh
Q 026945 92 --MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 92 --~~da~~~l~~~gadgVmigR 111 (230)
+.-+..+.. .||||+||=.
T Consensus 278 ~v~~~a~AAvA-~GAdGliIE~ 298 (335)
T PRK08673 278 LVEPLALAAVA-AGADGLIVEV 298 (335)
T ss_pred chHHHHHHHHH-hCCCEEEEEe
Confidence 234455554 8999999953
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.076 Score=48.68 Aligned_cols=102 Identities=17% Similarity=0.234 Sum_probs=67.4
Q ss_pred CCChHHHHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 1 MDNLPLVKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
|.|+.-+..-++++++.- ..-++.-+..-.+.+-.+++++.+.+.|+|.|++-.-..- .++..-++.++.+|+
T Consensus 121 lND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGl----ltP~~ayelVk~iK~ 196 (472)
T COG5016 121 LNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGL----LTPYEAYELVKAIKK 196 (472)
T ss_pred ccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeeccccc----CChHHHHHHHHHHHH
Confidence 456666666677776542 1222222333336678999999999999999998664332 233456899999999
Q ss_pred hCCccEEEcCCCCCH---HHHHHHHHhhCCcEE
Q 026945 78 ALRIPVLANGNVRHM---EDVQKCLEETGCEGV 107 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~---~da~~~l~~~gadgV 107 (230)
.+++||....--.|. -...++++ .|+|++
T Consensus 197 ~~~~pv~lHtH~TsG~a~m~ylkAvE-AGvD~i 228 (472)
T COG5016 197 ELPVPVELHTHATSGMAEMTYLKAVE-AGVDGI 228 (472)
T ss_pred hcCCeeEEecccccchHHHHHHHHHH-hCcchh
Confidence 999999865543332 22334454 799976
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.027 Score=50.35 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.-.+.++.++.. .++ |-+.+|.+ .+..+.+..+.++| +|+|.+..-. +++ ..-++.++.+++..+
T Consensus 67 ~~E~~~sfvrk~k~~-~L~--v~~SvG~t-~e~~~r~~~lv~a~~~~d~i~~D~ah-----g~s-~~~~~~i~~i~~~~p 136 (321)
T TIGR01306 67 DEESRIPFIKDMQER-GLF--ASISVGVK-ACEYEFVTQLAEEALTPEYITIDIAH-----GHS-NSVINMIKHIKTHLP 136 (321)
T ss_pred CHHHHHHHHHhcccc-ccE--EEEEcCCC-HHHHHHHHHHHhcCCCCCEEEEeCcc-----Cch-HHHHHHHHHHHHhCC
Confidence 556555555555332 233 44444444 34456777778888 6998874421 111 224688999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.|++..|+|.|.+++..+++ .|||+|.+|
T Consensus 137 ~~~vi~GnV~t~e~a~~l~~-aGad~I~V~ 165 (321)
T TIGR01306 137 DSFVIAGNVGTPEAVRELEN-AGADATKVG 165 (321)
T ss_pred CCEEEEecCCCHHHHHHHHH-cCcCEEEEC
Confidence 99999999999999999886 899999876
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=47.27 Aligned_cols=37 Identities=14% Similarity=0.479 Sum_probs=30.6
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
+|.+-|||+. +++.++++ .|+|+|.+|++++.+|+..
T Consensus 172 ~i~v~GGI~~-~nv~~l~~-~GaD~vvvgSai~~~~d~~ 208 (220)
T PRK05581 172 LIEVDGGINA-DNIKECAE-AGADVFVAGSAVFGAPDYK 208 (220)
T ss_pred eEEEECCCCH-HHHHHHHH-cCCCEEEEChhhhCCCCHH
Confidence 3567799976 89988886 8999999999999877643
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.05 Score=47.92 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=68.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-c--cc-HHHHHHH--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-R--AD-WNAIKAV-- 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~--~~-~~~i~~i-- 75 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.+.++|+..|+|-..+...+.++.+ . .+ -+.+.+|
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~A 136 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAA 136 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHH
Confidence 3455677788888889999999998875 45677888999999999999998765432222211 1 11 2344444
Q ss_pred -HhhC-CccEEEcCCCCC-----HHHHHHH---HHhhCCcEEEE
Q 026945 76 -KNAL-RIPVLANGNVRH-----MEDVQKC---LEETGCEGVLS 109 (230)
Q Consensus 76 -~~~~-~ipvi~nGgI~s-----~~da~~~---l~~~gadgVmi 109 (230)
++.. +.+++.|....+ .+++.+. ..+.|||+|++
T Consensus 137 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi 180 (285)
T TIGR02317 137 AVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFP 180 (285)
T ss_pred HHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEe
Confidence 3332 345666553322 4455432 23479999998
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.024 Score=51.18 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+-|++..+++++.+++
T Consensus 159 ~~~D~~~i~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~L~~~~~~ 228 (352)
T cd03325 159 VDAAVERVAALREAVGPDIDIGVDFHGRVSKPMAKDLAKELEPYRLLFIE-------E--PV-LPENVEALAEIAARTTI 228 (352)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C--CC-CccCHHHHHHHHHhCCC
Confidence 455677888888876 466666666678888889999999888888886 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.++.++..+++...+|.|.+
T Consensus 229 pia~dEs~~~~~~~~~~~~~~~~d~v~~ 256 (352)
T cd03325 229 PIATGERLFSRWDFKELLEDGAVDIIQP 256 (352)
T ss_pred CEEecccccCHHHHHHHHHhCCCCEEec
Confidence 9998778999999999998767887765
|
D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.055 Score=47.84 Aligned_cols=118 Identities=11% Similarity=0.171 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-Cc--cc-HHHHHHHH-
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FR--AD-WNAIKAVK- 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~--~~-~~~i~~i~- 76 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+..|+|-..+...+.+.. +. .. -+.+.+|+
T Consensus 62 ~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~A 141 (292)
T PRK11320 62 TLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKA 141 (292)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHH
Confidence 3456677888888889999999998875 5667888999999999999999765432222221 11 11 23444443
Q ss_pred --hhC-CccEEEcCCCCC-----HHHHHH---HHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 --NAL-RIPVLANGNVRH-----MEDVQK---CLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 --~~~-~ipvi~nGgI~s-----~~da~~---~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.. +.+++.|..... .+++.+ ...+.|||+|++- .+.++.-.++
T Consensus 142 a~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~--~~~~~~~i~~ 196 (292)
T PRK11320 142 AVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPE--AMTELEMYRR 196 (292)
T ss_pred HHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHHH
Confidence 332 455555543322 445542 2234899999983 2444444443
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.016 Score=54.84 Aligned_cols=70 Identities=24% Similarity=0.448 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+.++.+.++|++.|+|..-. +.+ ...|+.|+++++.. ++||++ |+|.|.+++..+.+ .|||+|.+|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~-----G~s-~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~-aGad~I~vg 310 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQ-----GNS-IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLID-AGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC-----CCc-hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHH-cCCCEEEEC
Confidence 345889999999999999986531 111 22378999999986 588887 99999999999886 899999764
|
|
| >TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.038 Score=50.17 Aligned_cols=97 Identities=15% Similarity=0.210 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+-+++..+++++..+
T Consensus 169 ~~~~d~~~v~~~re~~g~~~~l~~DaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~ 238 (368)
T TIGR02534 169 DPADDVAHVVAIAKALGDRASVRVDVNAAWDERTALHYLPQLADAGVELIE-------Q--PT-PAENREALARLTRRFN 238 (368)
T ss_pred CcHHHHHHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHhcChhheE-------C--CC-CcccHHHHHHHHHhCC
Confidence 4555567788888876 344555445568888899999999988877665 2 11 1346888899999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.-.+.+..++.++++..++|.|.+
T Consensus 239 ~pia~dE~~~~~~~~~~~~~~~~~d~~~~ 267 (368)
T TIGR02534 239 VPIMADESVTGPADALAIAKASAADVFAL 267 (368)
T ss_pred CCEEeCcccCCHHHHHHHHHhCCCCEEEE
Confidence 99999888999999999998777898754
|
This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2). |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0072 Score=50.56 Aligned_cols=103 Identities=13% Similarity=0.354 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------------
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------------- 60 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------------- 60 (230)
-++++++++.+++|+.|-+=+. +...+++.+.++|++.|++|..+....
T Consensus 46 ~~~i~~i~~~~~~~~DvHLMv~----~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~ 121 (201)
T PF00834_consen 46 PDIIKAIRKITDLPLDVHLMVE----NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEEL 121 (201)
T ss_dssp HHHHHHHHTTSSSEEEEEEESS----SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGG
T ss_pred HHHHHHHhhcCCCcEEEEeeec----cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHH
Confidence 3568888888889999887432 234677888888888888885422100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|+.|.. -++-|+++++. .++.+..-|||+ .+.+..+.+ .|+|.+.+|+++..
T Consensus 122 ~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~-~~~~~~~~~-aGad~~V~Gs~iF~ 199 (201)
T PF00834_consen 122 EPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN-EENIKQLVE-AGADIFVAGSAIFK 199 (201)
T ss_dssp TTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES-TTTHHHHHH-HT--EEEESHHHHT
T ss_pred HHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC-HHHHHHHHH-cCCCEEEECHHHhC
Confidence 1222222 24445555443 358899999995 567777775 89999999998765
Q ss_pred C
Q 026945 116 N 116 (230)
Q Consensus 116 n 116 (230)
+
T Consensus 200 ~ 200 (201)
T PF00834_consen 200 A 200 (201)
T ss_dssp S
T ss_pred C
Confidence 3
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.042 Score=50.39 Aligned_cols=97 Identities=18% Similarity=0.135 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-|++..+++++.++
T Consensus 187 ~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~L~~~~~ 256 (385)
T cd03326 187 PLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYGLRWYE-------E--PG-DPLDYALQAELADHYD 256 (385)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhCcCCCEEE-------C--CC-CccCHHHHHHHHhhCC
Confidence 3455567788888776 466666666678888889999999888888776 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCC----cEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGC----EGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~ga----dgVmi 109 (230)
+||.+.=.+.++.++.++++...+ |.|.+
T Consensus 257 iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~ 289 (385)
T cd03326 257 GPIATGENLFSLQDARNLLRYGGMRPDRDVLQF 289 (385)
T ss_pred CCEEcCCCcCCHHHHHHHHHhCCccccCCEEEe
Confidence 999998889999999999985444 76654
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.016 Score=51.89 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC--CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~--~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+...+.++.++. ..+.|-+.++.+ .+..+-+..|.++|+ |.|.|..-... ...-.+.|+++++..+
T Consensus 70 ~~e~~~~~~r~~~~---~~l~v~~~vg~~-~~~~~~~~~Lv~ag~~~d~i~iD~a~gh------~~~~~e~I~~ir~~~p 139 (326)
T PRK05458 70 DPEARIPFIKDMHE---QGLIASISVGVK-DDEYDFVDQLAAEGLTPEYITIDIAHGH------SDSVINMIQHIKKHLP 139 (326)
T ss_pred CHHHHHHHHHhccc---cccEEEEEecCC-HHHHHHHHHHHhcCCCCCEEEEECCCCc------hHHHHHHHHHHHhhCC
Confidence 55555555544422 123444444443 345677888888855 99999443211 0223577999999886
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||++ |+|.|.+++..+.+ .|||++.+|
T Consensus 140 ~~~vi~-g~V~t~e~a~~l~~-aGad~i~vg 168 (326)
T PRK05458 140 ETFVIA-GNVGTPEAVRELEN-AGADATKVG 168 (326)
T ss_pred CCeEEE-EecCCHHHHHHHHH-cCcCEEEEC
Confidence 66555 88999999998886 899999876
|
|
| >PRK14017 galactonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.03 Score=51.14 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+.+++..+++++.+++
T Consensus 160 ~~~d~~~i~avr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~L~~~~~~ 229 (382)
T PRK14017 160 VDAAVARVAAVREAVGPEIGIGVDFHGRVHKPMAKVLAKELEPYRPMFIE-------E--PV-LPENAEALPEIAAQTSI 229 (382)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCCCeEE-------C--CC-CcCCHHHHHHHHhcCCC
Confidence 355677888888876 466666666678888899999999998888876 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.++.++..+++...+|.|.+
T Consensus 230 pIa~dEs~~~~~~~~~li~~~a~d~v~~ 257 (382)
T PRK14017 230 PIATGERLFSRWDFKRVLEAGGVDIIQP 257 (382)
T ss_pred CEEeCCccCCHHHHHHHHHcCCCCeEec
Confidence 9999888999999999998766887765
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0036 Score=53.10 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=46.0
Q ss_pred CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 64 ~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
..|..-+.++++++.. |++..|||+|++.+.++.+ .|||.|..|.-+..+|.-+.+
T Consensus 177 ~~Pv~~e~v~~v~~~~--~LivGGGIrs~E~A~~~a~-agAD~IVtG~iiee~~~~~~~ 232 (240)
T COG1646 177 GDPVPVEMVSRVLSDT--PLIVGGGIRSPEQAREMAE-AGADTIVTGTIIEEDPDKALE 232 (240)
T ss_pred CCCcCHHHHHHhhccc--eEEEcCCcCCHHHHHHHHH-cCCCEEEECceeecCHHHHHH
Confidence 3455667777776654 9999999999999999886 899999999999999955443
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.038 Score=50.03 Aligned_cols=99 Identities=13% Similarity=0.209 Sum_probs=69.1
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEecCCCCCcCCC-CCcccHHHHHHHHhhCCccEEEcC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+++++.+ ++.||.+|.-...+.+++...++.+.+.|.. .+-+|..++.-..+| ....|+..+..+++..++|||++-
T Consensus 200 LL~~va~-t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~Dp 278 (352)
T PRK13396 200 LLKKVGA-QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDP 278 (352)
T ss_pred HHHHHHc-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECC
Confidence 3555543 5899999998887889999999999999985 455565332211122 235799999999998899998763
Q ss_pred ----CCC--CHHHHHHHHHhhCCcEEEEe
Q 026945 88 ----NVR--HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 88 ----gI~--s~~da~~~l~~~gadgVmig 110 (230)
|.+ ++.-+..++. .||||+||=
T Consensus 279 sH~~G~sd~~~~~a~AAva-~GAdGliIE 306 (352)
T PRK13396 279 SHGTGKSEYVPSMAMAAIA-AGTDSLMIE 306 (352)
T ss_pred cccCCcHHHHHHHHHHHHh-hCCCeEEEE
Confidence 221 2333344454 799999994
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.051 Score=47.87 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC---C---Cccc----HHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK---K---FRAD----WNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~---~---~~~~----~~~i~ 73 (230)
.+.+.+.++.|..++++||++-+-.|-+..+....++.+.++|+..|++-..+...+++. . .-.. .+.|+
T Consensus 63 ~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~ 142 (285)
T TIGR02320 63 WTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIR 142 (285)
T ss_pred HHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHH
Confidence 455666788888888999999998876677888999999999999999955433222111 1 0111 23344
Q ss_pred HHHhh-C--CccEEEcCCC----CCHHHHHHH---HHhhCCcEEEEe
Q 026945 74 AVKNA-L--RIPVLANGNV----RHMEDVQKC---LEETGCEGVLSA 110 (230)
Q Consensus 74 ~i~~~-~--~ipvi~nGgI----~s~~da~~~---l~~~gadgVmig 110 (230)
.+++. . +++|++-=|. ...+++.+. ..+.|||+|++=
T Consensus 143 Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 143 AGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred HHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 44443 2 4677665332 235555432 234899999984
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.003 Score=51.69 Aligned_cols=71 Identities=23% Similarity=0.310 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.....-.+.+++..+|++.+-+. .-...++++++.+++|||+.|=|.+.+++.++|+ .||++|.-+..
T Consensus 104 ~al~~~~~~i~~~~PD~vEilPg-----------~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~-aGa~aVSTS~~ 171 (175)
T PF04309_consen 104 SALETGIKQIEQSKPDAVEILPG-----------VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALK-AGADAVSTSNK 171 (175)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESC-----------CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCC-TTCEEEEE--H
T ss_pred HHHHHHHHHHhhcCCCEEEEchH-----------HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHH-cCCEEEEcCCh
Confidence 33444566777888899887553 2236788888889999999999999999999997 89999998765
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
-|+
T Consensus 172 ~LW 174 (175)
T PF04309_consen 172 ELW 174 (175)
T ss_dssp HHC
T ss_pred Hhc
Confidence 443
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.034 Score=50.02 Aligned_cols=96 Identities=20% Similarity=0.177 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-|++..+++++.+++
T Consensus 154 ~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~~ 223 (341)
T cd03327 154 LRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYAIKMARALEKYELRWIE-------E--PL-IPDDIEGYAELKKATGI 223 (341)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhhcCCcccc-------C--CC-CccCHHHHHHHHhcCCC
Confidence 355667788888876 356666666668888888999999888877665 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.+..++.++++...+|.|.+
T Consensus 224 pIa~gE~~~~~~~~~~~i~~~a~d~i~~ 251 (341)
T cd03327 224 PISTGEHEYTVYGFKRLLEGRAVDILQP 251 (341)
T ss_pred CeEeccCccCHHHHHHHHHcCCCCEEec
Confidence 9998778999999999998777887765
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown. |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.034 Score=46.38 Aligned_cols=89 Identities=19% Similarity=0.280 Sum_probs=63.7
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
++..=+|. .+.+++.++++.+.+.|+..+.|.-||.. -.+.|+.+++..+--+++.|.|.|.++++++++
T Consensus 9 ~iiaVir~-~~~~~a~~~~~al~~gGi~~iEiT~~t~~---------a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~ 78 (196)
T PF01081_consen 9 KIIAVIRG-DDPEDAVPIAEALIEGGIRAIEITLRTPN---------ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIA 78 (196)
T ss_dssp SEEEEETT-SSGGGHHHHHHHHHHTT--EEEEETTSTT---------HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHH
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEecCCcc---------HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHH
Confidence 34444675 45688999999999999999999887642 258899898887767899999999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccch
Q 026945 101 ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.||+.++.= -.||.+.+..
T Consensus 79 -aGA~FivSP---~~~~~v~~~~ 97 (196)
T PF01081_consen 79 -AGAQFIVSP---GFDPEVIEYA 97 (196)
T ss_dssp -HT-SEEEES---S--HHHHHHH
T ss_pred -cCCCEEECC---CCCHHHHHHH
Confidence 899988762 2455555543
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.032 Score=47.66 Aligned_cols=100 Identities=21% Similarity=0.307 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC-CCc---------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-DEK--------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~-~~~--------------------------- 60 (230)
.+++++++.+++|+.|-+=+ .+...+++.+.++|++.|++|.-.. ..-
T Consensus 49 ~~i~~ir~~t~~~~DvHLMv----~~P~~~i~~~~~aGad~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l 124 (229)
T PRK09722 49 FFVSQVKKLASKPLDVHLMV----TDPQDYIDQLADAGADFITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESI 124 (229)
T ss_pred HHHHHHHhcCCCCeEEEEEe----cCHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHH
Confidence 56788887777888776643 3456788999999999999997521 100
Q ss_pred ----------------CCCCCcc----cHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 61 ----------------DGKKFRA----DWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 61 ----------------~~~~~~~----~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|+.|.. -++-|+++++. .++.+.+-|||+ .+.+.++.+ .|||.+.+|++++
T Consensus 125 ~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~-aGad~~V~Gss~i 201 (229)
T PRK09722 125 KYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLME-AGADVFIVGTSGL 201 (229)
T ss_pred HHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHH-cCCCEEEEChHHH
Confidence 0111111 12234444432 236688999996 778877775 8999999998633
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.021 Score=47.44 Aligned_cols=83 Identities=33% Similarity=0.350 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.++..+.++.+...--..+.+-...+- +...++|++.+..+.+...-||+..|||.-.||.+.+.. .||+||.+
T Consensus 134 ~~~ed~le~Vk~l~~~~~~~lIvLDi~aV---Gt~~G~~~E~l~~~~~~s~~pVllGGGV~g~Edlel~~~-~Gv~gvLv 209 (229)
T COG1411 134 PWLEDFLETVKDLNYRRDPGLIVLDIGAV---GTKSGPDYELLTKVLELSEHPVLLGGGVGGMEDLELLLG-MGVSGVLV 209 (229)
T ss_pred CCchhHHHHHHHHhccCCCCeEEEEcccc---ccccCCCHHHHHHHHHhccCceeecCCcCcHHHHHHHhc-CCCceeee
Confidence 34567777777766544323333222211 122357899999999988899999999999999998886 89999999
Q ss_pred ehhhhhC
Q 026945 110 AESLLEN 116 (230)
Q Consensus 110 gR~~l~n 116 (230)
|+++-..
T Consensus 210 aTalh~G 216 (229)
T COG1411 210 ATALHEG 216 (229)
T ss_pred hhhhhcC
Confidence 9977543
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.064 Score=47.62 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=60.4
Q ss_pred cCCceEEEE--ECCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCC
Q 026945 17 NLNVPVSCK--IRVF-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGN 88 (230)
Q Consensus 17 ~~~~pvsvK--iR~g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGg 88 (230)
.+++|+.+= -|-. .+.+...-.++...+.|+|.|-+---+.. +.-+.+.++++.+.+ ++||+..||
T Consensus 165 ~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~------~~g~~e~f~~vv~~~g~vpVviaGG 238 (304)
T PRK06852 165 KHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKE------GANPAELFKEAVLAAGRTKVVCAGG 238 (304)
T ss_pred HhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcC------CCCCHHHHHHHHHhCCCCcEEEeCC
Confidence 358887652 2221 12233455667788899999876432211 113457888888888 899888887
Q ss_pred CC-CHHHHHH----HHHhhCCcEEEEehhhhhCC
Q 026945 89 VR-HMEDVQK----CLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 89 I~-s~~da~~----~l~~~gadgVmigR~~l~nP 117 (230)
=+ +.+++.+ +++..|+.||++||-....|
T Consensus 239 ~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~ 272 (304)
T PRK06852 239 SSTDPEEFLKQLYEQIHISGASGNATGRNIHQKP 272 (304)
T ss_pred CCCCHHHHHHHHHHHHHHcCCceeeechhhhcCC
Confidence 65 4445544 44447999999999665543
|
|
| >cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.057 Score=50.01 Aligned_cols=97 Identities=13% Similarity=0.047 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | .. .+-+++..+++++.+
T Consensus 222 ~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iE-------E--P~-~~~d~~~~~~L~~~~~ 291 (415)
T cd03324 222 DLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEAIEWVKQLAEFKPWWIE-------E--PT-SPDDILGHAAIRKALA 291 (415)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCCEEE-------C--CC-CCCcHHHHHHHHHhcc
Confidence 3455567788888876 355666666678888899999999998888776 2 11 234788899999988
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.-.+.+..++.++++...+|.+.+
T Consensus 292 ~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~ 323 (415)
T cd03324 292 PLPIGVATGEHCQNRVVFKQLLQAGAIDVVQI 323 (415)
T ss_pred cCCCceecCCccCCHHHHHHHHHcCCCCEEEe
Confidence 699988778999999999998666787754
|
rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0075 Score=55.10 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHH---HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcE
Q 026945 36 IKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKA---VKNALRIPVLANGNVRHMEDVQKCLEETGCEG 106 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~---i~~~~~ipvi~nGgI~s~~da~~~l~~~gadg 106 (230)
.+-++.|.++|+|.+-|--. |.+-. -.|.+.-..+.+ .+...++|||+-|||.+..++.++|. .|++.
T Consensus 303 ~~qa~nLI~aGaDgLrVGMGsGSiCiTqevm--a~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~-lGAst 379 (503)
T KOG2550|consen 303 KEQAANLIAAGADGLRVGMGSGSICITQKVM--ACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALG-LGAST 379 (503)
T ss_pred HHHHHHHHHccCceeEeccccCceeeeceee--eccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhh-cCchh
Confidence 35677788999999988533 22211 112233334444 44557899999999999999999997 89999
Q ss_pred EEEehh
Q 026945 107 VLSAES 112 (230)
Q Consensus 107 VmigR~ 112 (230)
||+|-=
T Consensus 380 VMmG~l 385 (503)
T KOG2550|consen 380 VMMGGL 385 (503)
T ss_pred heecce
Confidence 999953
|
|
| >PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.053 Score=49.93 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=77.1
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
...+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++-+++..+++++.+++||
T Consensus 191 ~~~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~L~~~~~iPI 260 (404)
T PRK15072 191 FVPKLFEAVRNKFGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE-------D--PT-PAENQEAFRLIRQHTTTPL 260 (404)
T ss_pred HHHHHHHHHHhhhCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE-------C--CC-CccCHHHHHHHHhcCCCCE
Confidence 3457899999887 466777777779999999999999999988887 2 11 2347899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.=.+.++.++.++++...+|.|.+
T Consensus 261 a~dEs~~~~~~~~~li~~~a~dii~~ 286 (404)
T PRK15072 261 AVGEVFNSIWDCKQLIEEQLIDYIRT 286 (404)
T ss_pred EeCcCccCHHHHHHHHHcCCCCEEec
Confidence 99878999999999998767888765
|
|
| >cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.08 Score=47.91 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++.++ +.+.+-..-+|+..++.++++.+++.|+.+|. + .. ++-+++..+++++..++
T Consensus 171 ~~~d~~~v~avr~~~g~~~~l~iDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~~ 240 (365)
T cd03318 171 PADDLAHVEAIAKALGDRASVRVDVNQAWDESTAIRALPRLEAAGVELIE-------Q--PV-PRENLDGLARLRSRNRV 240 (365)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHhcCcceee-------C--CC-CcccHHHHHHHHhhcCC
Confidence 4445667777777663 44555555567878888888888888877665 2 11 13378889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.+.+++.++++...+|.+.+
T Consensus 241 pia~dE~~~~~~~~~~~i~~~~~d~~~~ 268 (365)
T cd03318 241 PIMADESVSGPADAFELARRGAADVFSL 268 (365)
T ss_pred CEEcCcccCCHHHHHHHHHhCCCCeEEE
Confidence 9998777999999999998766888744
|
This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.032 Score=48.83 Aligned_cols=63 Identities=13% Similarity=0.304 Sum_probs=44.5
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccH-HHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~-~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+..+.++|+|+|-+...... +. +.++.++.. .++|+++.||| +++.+.++.+ +|+|+|++|.-
T Consensus 196 a~~A~~~gaD~I~ld~~~p~---------~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~-~Gvd~I~vsai 260 (272)
T cd01573 196 ALAAAEAGADILQLDKFSPE---------ELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAA-AGADILVTSAP 260 (272)
T ss_pred HHHHHHcCCCEEEECCCCHH---------HHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHH-cCCcEEEEChh
Confidence 34455899999998654322 12 333434443 26999999999 7999999886 89999977653
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.05 Score=50.04 Aligned_cols=93 Identities=16% Similarity=0.116 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+|+.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ ++.++. | .. + +++..+++++.+++
T Consensus 196 ~~~~di~~v~avRea~~~~~l~vDaN~~w~~~~A~~~~~~l~~-~l~~iE-------e--P~--~-d~~~~~~L~~~~~~ 262 (395)
T cd03323 196 PGEEEIEAVKALAEAFPGARLRLDPNGAWSLETAIRLAKELEG-VLAYLE-------D--PC--G-GREGMAEFRRATGL 262 (395)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEeCCCCcCHHHHHHHHHhcCc-CCCEEE-------C--CC--C-CHHHHHHHHHhcCC
Confidence 3455566777777765 34444444556777888888888888 777665 2 12 3 88999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
||.++=.+.+..++.++++...+|.+.
T Consensus 263 PIa~dEs~~~~~~~~~~i~~~avdil~ 289 (395)
T cd03323 263 PLATNMIVTDFRQLGHAIQLNAVDIPL 289 (395)
T ss_pred CEEcCCcccCHHHHHHHHHcCCCcEEe
Confidence 999877899999999999876678773
|
GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.053 Score=46.58 Aligned_cols=97 Identities=21% Similarity=0.189 Sum_probs=68.1
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEEC-----CC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIR-----VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR-----~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
.++...+.+++++++.+ .++.|=-| .+ ...+++++-++.+.++|+|.+.+++.+ +.+.+++
T Consensus 122 ~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------~~~~~~~ 190 (243)
T cd00377 122 PIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------DPEEIRA 190 (243)
T ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHH
Confidence 45556666777766543 24444444 33 357889999999999999999998743 5688999
Q ss_pred HHhhCCccEEEcC--CC--CCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 75 VKNALRIPVLANG--NV--RHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 75 i~~~~~ipvi~nG--gI--~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+..+.||+++. +- .+.+++. +.|+..|.+|-.++
T Consensus 191 ~~~~~~~Pl~~~~~~~~~~~~~~~l~----~lG~~~v~~~~~~~ 230 (243)
T cd00377 191 FAEAPDVPLNVNMTPGGNLLTVAELA----ELGVRRVSYGLALL 230 (243)
T ss_pred HHhcCCCCEEEEecCCCCCCCHHHHH----HCCCeEEEEChHHH
Confidence 9999999988763 22 3444443 47999999876543
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.092 Score=48.56 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=66.5
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC---Cc-CC----CCCcccHHHHHHHHhhC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD---EK-DG----KKFRADWNAIKAVKNAL 79 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~---~~-~~----~~~~~~~~~i~~i~~~~ 79 (230)
+.++.+.+.. +.||.+-+-...+.++..++++.++++|+|+|.+----.. .+ .+ ..+..-.+.++.+++.+
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc
Confidence 3344444444 4777766653336788999999999999999998532211 11 00 11112234566667777
Q ss_pred CccEE--EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVL--ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi--~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||+ ...++.+..++.+.+++.|+|||.+
T Consensus 168 ~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 168 RLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 89987 5677778888888888899999984
|
|
| >cd03322 rpsA The starvation sensing protein RpsA from E | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.07 Score=48.38 Aligned_cols=92 Identities=10% Similarity=0.102 Sum_probs=73.9
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.+.++++++.+ ++.+.+-..-+|+.+++..+++.+++.++.++. | .. ++-+++..+++++..++||.+
T Consensus 150 ~~~v~avre~~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~L~~~~~~pia~ 219 (361)
T cd03322 150 PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRLFWME-------D--PT-PAENQEAFRLIRQHTATPLAV 219 (361)
T ss_pred HHHHHHHHhccCCCceEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C--CC-CcccHHHHHHHHhcCCCCEEe
Confidence 46678888876 366777667678989999999999999988886 2 11 234789999999999999998
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.++.++..+++...+|.+.+
T Consensus 220 gE~~~~~~~~~~~i~~~a~di~~~ 243 (361)
T cd03322 220 GEVFNSIWDWQNLIQERLIDYIRT 243 (361)
T ss_pred ccCCcCHHHHHHHHHhCCCCEEec
Confidence 778999999999998766777754
|
coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.064 Score=44.98 Aligned_cols=90 Identities=22% Similarity=0.357 Sum_probs=69.0
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.+++.++++.+.+.|++.+.|.-|+.. -.+.|+++++..+--+++.|.|.|.++++++.+
T Consensus 9 ~liaVlr~-~~~e~a~~~~~al~~~Gi~~iEit~~t~~---------a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRI-DDVDDALPLAKALIEGGLRVLEVTLRTPV---------ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 34444665 45688999999999999999999876532 357899998877655788899999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccchh
Q 026945 101 ETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.|++.++. =+ .||.+....+
T Consensus 79 -aGA~Fivs-P~--~~~~v~~~~~ 98 (204)
T TIGR01182 79 -AGAQFIVS-PG--LTPELAKHAQ 98 (204)
T ss_pred -cCCCEEEC-CC--CCHHHHHHHH
Confidence 89998854 22 3666665433
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.13 Score=45.51 Aligned_cols=100 Identities=22% Similarity=0.335 Sum_probs=64.0
Q ss_pred HHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--CcCCC------CCcccHHHHHHHHhhCCc
Q 026945 11 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--EKDGK------KFRADWNAIKAVKNALRI 81 (230)
Q Consensus 11 v~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--~~~~~------~~~~~~~~i~~i~~~~~i 81 (230)
+..+.+.. +.|+.+-+--..+.++..++++.+++.|+++|.+----.. ...+. .+..-.+.++.+++.+++
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI 169 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence 44444444 5788776644347788999999999999999988432111 10110 011123456667777789
Q ss_pred cEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++ .-++.+..++.+.+.+.|+|+|.+.
T Consensus 170 Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 170 PVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 9874 4455566677777777999999764
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.07 Score=44.65 Aligned_cols=89 Identities=18% Similarity=0.311 Sum_probs=69.2
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.+++.++++.+.+.|+..|.|.-+|.. -.+.|+++++..+--+++.|-|.|.++++++.+
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~~tp~---------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITLRTPA---------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHH
Confidence 44444664 46789999999999999999999876542 357899998877666789999999999999997
Q ss_pred hhCCcEEEEehhhhhCCccccch
Q 026945 101 ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.|++.++.= -.||.+.+..
T Consensus 75 -aGA~FivSP---~~~~~vi~~a 93 (201)
T PRK06015 75 -AGSRFIVSP---GTTQELLAAA 93 (201)
T ss_pred -cCCCEEECC---CCCHHHHHHH
Confidence 899988762 2456555543
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.086 Score=44.46 Aligned_cols=97 Identities=28% Similarity=0.377 Sum_probs=72.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+.+. ++..=+|. .+.+++.++++.+.+.|++.|.|.-++. .-.+.|+.+++..+--+++.|-
T Consensus 7 ~~~~~l~~~---~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEitl~~~---------~~~~~I~~l~~~~p~~~IGAGT 73 (212)
T PRK05718 7 SIEEILRAG---PVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVTLRTP---------AALEAIRLIAKEVPEALIGAGT 73 (212)
T ss_pred HHHHHHHHC---CEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEecCCc---------cHHHHHHHHHHHCCCCEEEEee
Confidence 455555443 33333664 5678999999999999999999985433 2357889998877666789999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
|.+.++++.+++ .|++.++. --.||.+.+.
T Consensus 74 Vl~~~~a~~a~~-aGA~Fivs---P~~~~~vi~~ 103 (212)
T PRK05718 74 VLNPEQLAQAIE-AGAQFIVS---PGLTPPLLKA 103 (212)
T ss_pred ccCHHHHHHHHH-cCCCEEEC---CCCCHHHHHH
Confidence 999999999997 89998876 2245555543
|
|
| >PRK02901 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.11 Score=46.54 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.-.+.++++++.++ +.+.+-..-+|+.++++++++.+ ++.++.+|. | +-.+++..+++++.+
T Consensus 116 ~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~Ai~~~~~L~e~~~l~~iE-------q-----P~~~~~~la~Lr~~~ 183 (327)
T PRK02901 116 TLADDVARVNAVRDALGPDGRVRVDANGGWSVDEAVAAARALDADGPLEYVE-------Q-----PCATVEELAELRRRV 183 (327)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHhhhccCceEEe-------c-----CCCCHHHHHHHHHhC
Confidence 34556677788877763 44555555568888899999998 667777775 2 112478888999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.=.+++..|..++++..++|.+.+
T Consensus 184 ~vPIA~DEs~~~~~d~~~l~~~~a~dvi~i 213 (327)
T PRK02901 184 GVPIAADESIRRAEDPLRVARAGAADVAVL 213 (327)
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999998778999999999998888898876
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.031 Score=46.77 Aligned_cols=107 Identities=16% Similarity=0.220 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC----------cCCCC--------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----------KDGKK-------------- 64 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~----------~~~~~-------------- 64 (230)
++++++++...+|+.+|+=... .....+++.+.++|+|++++|.-.... +++..
T Consensus 45 ~~v~~ir~~~~i~~D~k~~di~--~~~~~~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~ 122 (215)
T PRK13813 45 GIIEELKRYAPVIADLKVADIP--NTNRLICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALE 122 (215)
T ss_pred HHHHHHHhcCCEEEEeeccccH--HHHHHHHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCC
Confidence 5677777766777778875211 122334577888999999999754110 00000
Q ss_pred -------------------C----cccHHHHHHHHhhCCcc-EEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 65 -------------------F----RADWNAIKAVKNALRIP-VLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 65 -------------------~----~~~~~~i~~i~~~~~ip-vi~nGgI~s~-~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
| +...+.++++++..+-+ .+..|||+.. .++..+++ .|+|++++||+++..++
T Consensus 123 ~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~~~-aGad~iV~Gr~I~~~~d 200 (215)
T PRK13813 123 FIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRLGDELKIISPGIGAQGGKAADAIK-AGADYVIVGRSIYNAAD 200 (215)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHHHH-cCCCEEEECcccCCCCC
Confidence 0 00112334454444332 3377898753 24667775 89999999998776654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.03 Score=52.40 Aligned_cols=70 Identities=20% Similarity=0.356 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+-++.+.++|++.|.|..-... + ..-++.|+++++.. ++||++ |+|.|++++..+.+ .|||+|-+|
T Consensus 223 ~~~~~r~~~L~~aG~d~I~vd~a~g~---~---~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~-aGad~i~vg 293 (450)
T TIGR01302 223 EFDKERAEALVKAGVDVIVIDSSHGH---S---IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALID-AGADGLRVG 293 (450)
T ss_pred hhHHHHHHHHHHhCCCEEEEECCCCc---H---hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 35677888999999999998553221 1 23468899999884 799998 99999999999986 899999755
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.027 Score=53.50 Aligned_cols=70 Identities=21% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+-++.|.++|+|.|.+-.-. +. ...-|+.++++++..+ .+|++ |+|.|.+++..+.+ .|||+|.+|
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~-----g~-~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~-aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQ-----GD-SIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQ-AGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCC-----CC-cHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHH-cCcCEEEEC
Confidence 356788999999999999996621 21 1235899999999875 66655 99999999999997 899999765
|
|
| >PRK02714 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.15 Score=45.45 Aligned_cols=96 Identities=9% Similarity=0.180 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ .++.+|. | .. +.-+++..+.+++.
T Consensus 146 ~~~d~~~v~air~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~ 215 (320)
T PRK02714 146 LEQELKIFEQLLERLPAGAKLRLDANGGLSLEEAKRWLQLCDRRLSGKIEFIE-------Q--PL-PPDQFDEMLQLSQD 215 (320)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCCccEEE-------C--CC-CcccHHHHHHHHHh
Confidence 455567777887765 45566666667888888888888877 4666665 2 11 13378899999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.++.|+..+++...+|.|.+
T Consensus 216 ~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~i 246 (320)
T PRK02714 216 YQTPIALDESVANLAQLQQCYQQGWRGIFVI 246 (320)
T ss_pred CCCCEEECCccCCHHHHHHHHHcCCCCEEEE
Confidence 9999999889999999999998655666544
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=96.05 E-value=0.042 Score=45.39 Aligned_cols=92 Identities=16% Similarity=0.273 Sum_probs=58.6
Q ss_pred HHHHHHhhcCCceEE--EEECCCC-C--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVS--CKIRVFP-N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvs--vKiR~g~-~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+-|+++++.+++||. +|-.... + ..-+.+-++.+.++|++.|.+.+-.+. + +..-.+.++++++.. .++
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~-R----p~~l~~li~~i~~~~-~l~ 95 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRP-R----PETLEELIREIKEKY-QLV 95 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS------SS-HHHHHHHHHHCT-SEE
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCC-C----CcCHHHHHHHHHHhC-cEE
Confidence 347789999999984 4543221 1 224667788999999999999874332 1 133568899999876 444
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+ .||.|.+++..+.+ .|+|.|.-
T Consensus 96 M--ADist~ee~~~A~~-~G~D~I~T 118 (192)
T PF04131_consen 96 M--ADISTLEEAINAAE-LGFDIIGT 118 (192)
T ss_dssp E--EE-SSHHHHHHHHH-TT-SEEE-
T ss_pred e--eecCCHHHHHHHHH-cCCCEEEc
Confidence 4 69999999999997 89997643
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.13 Score=43.32 Aligned_cols=92 Identities=16% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. ++.|++..+++++..++||.+
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~L~~~~~~pIa~ 150 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------E--PC-APDDLEGYAALRRRTGIPIAA 150 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------C--CC-CccCHHHHHHHHhhCCCCEEe
Confidence 35677777765 466777777778989999999999998888886 2 11 134688899999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.++++..++++...+|.+.+
T Consensus 151 dEs~~~~~~~~~~~~~~~~d~~~~ 174 (229)
T cd00308 151 DESVTTVDDALEALELGAVDILQI 174 (229)
T ss_pred CCCCCCHHHHHHHHHcCCCCEEec
Confidence 667899999988888667787755
|
Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase. |
| >PRK15440 L-rhamnonate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.087 Score=48.47 Aligned_cols=96 Identities=10% Similarity=0.077 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++++ ++.+.+-..-+|+..+++++++.+++.|+.++. | .. .+-|++..+++++.+++
T Consensus 191 ~~~di~~v~avReavG~d~~l~vDaN~~~~~~~Ai~~~~~le~~~l~wiE-------E--Pl-~~~d~~~~~~L~~~~~~ 260 (394)
T PRK15440 191 LRKNAAMVADMREKVGDDFWLMLDCWMSLDVNYATKLAHACAPYGLKWIE-------E--CL-PPDDYWGYRELKRNAPA 260 (394)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCccee-------C--CC-CcccHHHHHHHHHhCCC
Confidence 355678889999887 577888877789999999999999999988886 2 11 24478899999999875
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||. +.=.+.|..++.++++...+|.+.+
T Consensus 261 ~i~ia~gE~~~~~~~~~~li~~~a~Divq~ 290 (394)
T PRK15440 261 GMMVTSGEHEATLQGFRTLLEMGCIDIIQP 290 (394)
T ss_pred CCceecCCCccCHHHHHHHHHcCCCCEEeC
Confidence 543 3335779999999998666777654
|
|
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.12 Score=45.54 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CC-C-C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+..+++++.... .+++|-.=+- ++ . + ..+..+..+-+++.|+|.+.|.-.|.-..+.. +..|++.+
T Consensus 114 i~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~-p~l~~~~l 191 (283)
T PRK07998 114 IAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDI-PRIDIPLL 191 (283)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCC-CCcCHHHH
Confidence 3455555555544 5777755442 21 1 1 12344555566778999998876665543322 45789999
Q ss_pred HHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhh
Q 026945 73 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~l 114 (230)
++|++.+++|++.-||=..+ +++.++++ .|+..|=|++.+.
T Consensus 192 ~~I~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~Tel~ 233 (283)
T PRK07998 192 KRIAEVSPVPLVIHGGSGIPPEILRSFVN-YKVAKVNIASDLR 233 (283)
T ss_pred HHHHhhCCCCEEEeCCCCCCHHHHHHHHH-cCCcEEEECHHHH
Confidence 99999999999999986655 66677775 8999999988654
|
|
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.079 Score=44.43 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=67.5
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCL 99 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l 99 (230)
|+..=+|. .+.++..++++.+.+.|+..|.|.-++.. ..+.++.+++..+.+ +++.|.|.+.+++..++
T Consensus 11 ~~~~v~r~-~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---------~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~ 80 (206)
T PRK09140 11 PLIAILRG-ITPDEALAHVGALIEAGFRAIEIPLNSPD---------PFDSIAALVKALGDRALIGAGTVLSPEQVDRLA 80 (206)
T ss_pred CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---------HHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHH
Confidence 44444775 35688999999999999999999765432 346889998887754 78999999999999999
Q ss_pred HhhCCcEEEEehhhhhCCcccc
Q 026945 100 EETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 100 ~~~gadgVmigR~~l~nP~lf~ 121 (230)
+ .|+|+++.+- .||.+..
T Consensus 81 ~-aGA~fivsp~---~~~~v~~ 98 (206)
T PRK09140 81 D-AGGRLIVTPN---TDPEVIR 98 (206)
T ss_pred H-cCCCEEECCC---CCHHHHH
Confidence 7 8999999953 4444443
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.051 Score=47.81 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCEEEE-----ecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEE
Q 026945 36 IKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLS 109 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~v-----h~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmi 109 (230)
.+..+-+++.|+|++.+ ||-.... ..+..+++.+++|++.+++|+++-||...+ +++.++.+ .|+.-|=|
T Consensus 152 eea~~f~~~TgvD~LAvaiGt~HG~y~~~---~kp~L~~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~-~GI~KiNi 227 (283)
T PRK08185 152 EQAEDFVSRTGVDTLAVAIGTAHGIYPKD---KKPELQMDLLKEINERVDIPLVLHGGSANPDAEIAESVQ-LGVGKINI 227 (283)
T ss_pred HHHHHHHHhhCCCEEEeccCcccCCcCCC---CCCCcCHHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHH-CCCeEEEe
Confidence 34444455669999999 6654331 134578999999999999999999998665 55556665 78888877
Q ss_pred ehhh
Q 026945 110 AESL 113 (230)
Q Consensus 110 gR~~ 113 (230)
++.+
T Consensus 228 ~T~l 231 (283)
T PRK08185 228 SSDM 231 (283)
T ss_pred ChHH
Confidence 6644
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.022 Score=53.65 Aligned_cols=69 Identities=33% Similarity=0.387 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+..+.++.|.++|++.|.+-.-.. .+ ..-.+.+++|++.. ++|||+ |.+-|.+.+..+.+ .|||+|-+|
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g-----~~-~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~-~G~d~i~vg 294 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHG-----HQ-VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLE-AGANIIKVG 294 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCC-----Cc-HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHH-hCCCEEEEC
Confidence 566889999999999999844221 11 22457889998875 799999 88999999999886 899998654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=45.21 Aligned_cols=102 Identities=21% Similarity=0.303 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCc-CC----CCCcccHHHHHHHHhhCC
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEK-DG----KKFRADWNAIKAVKNALR 80 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~-~~----~~~~~~~~~i~~i~~~~~ 80 (230)
.+.+.......+.|+.+-+. |.+.++..+.++.++++| +++|.+---....+ .+ .....-.+.++++++.++
T Consensus 79 ~~~~~~~~~~~~~pl~~qi~-g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 79 LEELKPVREEFPTPLIASVY-GSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHHHHhccCCCcEEEEee-cCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 33444444445678888775 456788999999999874 99998853222111 01 111223567788888888
Q ss_pred ccEEE--cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLA--NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~--nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||.+ +.++.+..++.+.+++.|+|++.+.
T Consensus 158 ~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 158 VPVFAKLSPNVTDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred CCEEEECCCChhhHHHHHHHHHHcCCCEEEEE
Confidence 89874 4445555566667777999999874
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.16 Score=44.25 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCccEEEcCCCC-CHHHHHHHHH---hhCCcEEEEehhhhhC
Q 026945 70 NAIKAVKNALRIPVLANGNVR-HMEDVQKCLE---ETGCEGVLSAESLLEN 116 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~-s~~da~~~l~---~~gadgVmigR~~l~n 116 (230)
+.++++.+..++||+..||=+ +.+++.++.+ +.|+.||++||-....
T Consensus 182 ~~f~~vv~a~~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~ 232 (264)
T PRK08227 182 EGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQS 232 (264)
T ss_pred HHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhcc
Confidence 677888888999999888865 4444544333 2899999999965544
|
|
| >TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.12 Score=45.83 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred ChHHHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+++.-.+.++++++.++ +.+.+-..-+|+..++.++++.+++ .++.+|. | .. + .++..+++++
T Consensus 136 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q--P~--~-~~~~~~~l~~ 203 (307)
T TIGR01927 136 ELAREGMLVNLLLEALPDKAELRLDANGGLSPDEAQQFLKALDPNLRGRIAFLE-------E--PL--P-DADEMSAFSE 203 (307)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhcccccCCCceEEe-------C--CC--C-CHHHHHHHHH
Confidence 45566677888887663 3444444446888889999999986 6777776 2 11 2 2378888999
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+++||.+.=.+.+..|+.++++...+|.|.+
T Consensus 204 ~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~i 235 (307)
T TIGR01927 204 ATGTAIALDESLWELPQLADEYGPGWRGALVI 235 (307)
T ss_pred hCCCCEEeCCCcCChHHHHHHHhcCCCceEEE
Confidence 99999999889999999999998655676654
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.23 Score=43.93 Aligned_cols=119 Identities=9% Similarity=0.082 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-Cc--cc-HHHHHHH---
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FR--AD-WNAIKAV--- 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~--~~-~~~i~~i--- 75 (230)
.+.+.+.++.|..++++||++-+-.|. +..+....++.++++|+..|++-.-+...+.+.. +. .+ -+.+.+|
T Consensus 62 ~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa 141 (294)
T TIGR02319 62 VSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAA 141 (294)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHH
Confidence 455677788888889999999998875 3455778899999999999999775432222221 11 11 2344444
Q ss_pred HhhC-CccEEEcCCCC-----CHHHHHHH---HHhhCCcEEEEehhhhhCCccccchh
Q 026945 76 KNAL-RIPVLANGNVR-----HMEDVQKC---LEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ~~~~-~ipvi~nGgI~-----s~~da~~~---l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.. +.+++.|.... ..+++.+. ..+.|||+|.+- | +.++.-..++.
T Consensus 142 ~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~-~-~~~~~ei~~~~ 197 (294)
T TIGR02319 142 VEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLE-A-MLDVEEMKRVR 197 (294)
T ss_pred HHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEec-C-CCCHHHHHHHH
Confidence 3332 24455554322 24444422 234899999993 2 45555544443
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.089 Score=43.27 Aligned_cols=88 Identities=19% Similarity=0.360 Sum_probs=67.0
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
|+..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++.+++..+-..++.|.|.+.+++..+++
T Consensus 5 ~~~~i~r~-~~~~~~~~~~~~l~~~G~~~vev~~~~~---------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~ 74 (190)
T cd00452 5 PLVAVLRG-DDAEDALALAEALIEGGIRAIEITLRTP---------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIA 74 (190)
T ss_pred cEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCh---------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHH
Confidence 44444664 4568899999999999999999976532 2456889998887655678899999999999987
Q ss_pred hhCCcEEEEehhhhhCCccccc
Q 026945 101 ETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~ 122 (230)
.|+|+++.+- .+|.+...
T Consensus 75 -~Ga~~i~~p~---~~~~~~~~ 92 (190)
T cd00452 75 -AGAQFIVSPG---LDPEVVKA 92 (190)
T ss_pred -cCCCEEEcCC---CCHHHHHH
Confidence 8999998763 34555443
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.18 Score=44.45 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCCC--C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVFP--N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g~--~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+..+++++-... .+++|-.=+ ++|- + ..+..+..+-+++.|+|.+.|.-.|.-..+...+..||+.+
T Consensus 117 i~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L 195 (285)
T PRK07709 117 VETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEM 195 (285)
T ss_pred HHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHH
Confidence 3455555555543 366666554 2221 1 12334444455667999998876665544333456799999
Q ss_pred HHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 73 KAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 196 ~~I~~~~~iPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 236 (285)
T PRK07709 196 EQVRDFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 236 (285)
T ss_pred HHHHHHHCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 99999999999999987665 66667775 788888776543
|
|
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.037 Score=52.36 Aligned_cols=109 Identities=18% Similarity=0.333 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCceE-EEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcC--------------------CC-CC
Q 026945 9 SLVEKLALNLNVPV-SCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD--------------------GK-KF 65 (230)
Q Consensus 9 eiv~~v~~~~~~pv-svKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~--------------------~~-~~ 65 (230)
++|+.++.. +-|| .|-|..| ++.+++.++++.|-..|+.++.+-+.+.+|.+ |. .|
T Consensus 112 rLv~kara~-G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGraGG 190 (717)
T COG4981 112 RLVQKARAS-GAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGG 190 (717)
T ss_pred HHHHHHHhc-CCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCccCC
Confidence 456666543 3444 2444444 57789999999999999999999877644320 11 12
Q ss_pred cccHHH--------HHHHHhhCCccEEEcCCCCCHHHHHHHHHh-----h-----CCcEEEEehhhhhCCc
Q 026945 66 RADWNA--------IKAVKNALRIPVLANGNVRHMEDVQKCLEE-----T-----GCEGVLSAESLLENPA 118 (230)
Q Consensus 66 ~~~~~~--------i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-----~-----gadgVmigR~~l~nP~ 118 (230)
.-.|+- -.+++..-+|-+++.|||.|++++...|.- . .+||+.+|.++|.--.
T Consensus 191 HHSweDld~llL~tYs~lR~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKE 261 (717)
T COG4981 191 HHSWEDLDDLLLATYSELRSRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKE 261 (717)
T ss_pred ccchhhcccHHHHHHHHHhcCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhh
Confidence 223442 245666678999999999999999988831 1 2799999999997544
|
|
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.11 Score=46.63 Aligned_cols=98 Identities=13% Similarity=0.103 Sum_probs=62.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~--~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++.++.....-++| .+|.. ++..+.++.|.+ +|+|.|+|..-. +++ ..-.+.|+.+++..+
T Consensus 80 ~~e~~~~fv~~~~~~~~~~~~v--avG~~-~~d~er~~~L~~~~~g~D~iviD~Ah-----Ghs-~~~i~~ik~ik~~~P 150 (346)
T PRK05096 80 SVEEWAAFVNNSSADVLKHVMV--STGTS-DADFEKTKQILALSPALNFICIDVAN-----GYS-EHFVQFVAKAREAWP 150 (346)
T ss_pred CHHHHHHHHHhccccccceEEE--EecCC-HHHHHHHHHHHhcCCCCCEEEEECCC-----CcH-HHHHHHHHHHHHhCC
Confidence 3455556666665443222333 23322 344566667766 599999985432 111 223578999999874
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++||+ |+|-|++-++.+++ .|||+|=+|=
T Consensus 151 ~~~vIa-GNV~T~e~a~~Li~-aGAD~vKVGI 180 (346)
T PRK05096 151 DKTICA-GNVVTGEMVEELIL-SGADIVKVGI 180 (346)
T ss_pred CCcEEE-ecccCHHHHHHHHH-cCCCEEEEcc
Confidence 66555 99999999998886 8999986553
|
|
| >TIGR03247 glucar-dehydr glucarate dehydratase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=47.96 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc----HHHHHHHHhhC
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNAL 79 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~ 79 (230)
+.-.+.++++++.+ ++.+.+-..-+|+.++++.+++.+++. +.+|. | .. ++-+ ++..+++++.+
T Consensus 210 ~~Di~~v~avRea~~d~~L~vDAN~~wt~~~Ai~~~~~Le~~-~~~iE-------e--Pv-~~~d~~~~~~~la~Lr~~~ 278 (441)
T TIGR03247 210 EEEIEAVTALAKRFPQARITLDPNGAWSLDEAIALCKDLKGV-LAYAE-------D--PC-GAEQGYSGREVMAEFRRAT 278 (441)
T ss_pred HHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhh-hceEe-------C--CC-CcccccchHHHHHHHHHhC
Confidence 44456666666654 234444444457777777777777765 54433 2 11 1224 78899999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
++||.+.=.+.++.++..+++...+|.+.
T Consensus 279 ~iPIa~dEs~~~~~~~~~li~~~avdi~~ 307 (441)
T TIGR03247 279 GLPTATNMIATDWRQMGHALQLQAVDIPL 307 (441)
T ss_pred CCCEEcCCccCCHHHHHHHHHhCCCCEEe
Confidence 99999877899999999999876777754
|
Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.14 Score=46.18 Aligned_cols=85 Identities=20% Similarity=0.307 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHH--cCCCEEEEecC-CCCCcCC-------CCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHHH-
Q 026945 33 QDTIKYAKMLED--AGCSLLAVHGR-TRDEKDG-------KKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLE- 100 (230)
Q Consensus 33 ~~~~~~a~~l~~--~G~~~i~vh~r-t~~~~~~-------~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l~- 100 (230)
+.....++.+.+ .|+|.+-+--- ......+ |+...-.+.++++.+..++|++ ++||+ +.+++.+.++
T Consensus 184 ~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~ 262 (340)
T PRK12858 184 EKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEF 262 (340)
T ss_pred HHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHH
Confidence 345677788884 99999876321 1000001 1111112567777888899976 47888 7777776554
Q ss_pred --hhCC--cEEEEehhhhhCCc
Q 026945 101 --ETGC--EGVLSAESLLENPA 118 (230)
Q Consensus 101 --~~ga--dgVmigR~~l~nP~ 118 (230)
+.|+ .||.+||....++-
T Consensus 263 A~~aGa~f~Gvl~GRniwq~~v 284 (340)
T PRK12858 263 ACEAGADFSGVLCGRATWQDGI 284 (340)
T ss_pred HHHcCCCccchhhhHHHHhhhh
Confidence 3789 99999998877644
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.046 Score=51.61 Aligned_cols=70 Identities=27% Similarity=0.354 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+..+.++.|.++|++.|.+-.-... ...-++.+++|++.. +++|++ |+|.|.+.+..+++ .|||+|-+|=
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~------~~~~~~~i~~ik~~~p~~~v~a-gnv~t~~~a~~l~~-aGad~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH------QEKMLEALRAVRALDPGVPIVA-GNVVTAEGTRDLVE-AGADIVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc------cHHHHHHHHHHHHHCCCCeEEe-eccCCHHHHHHHHH-cCCCEEEECc
Confidence 4568889999999999988553222 134578999999987 577776 99999999999997 8999987543
|
|
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.087 Score=42.78 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.....-.+.+++.++|+|.|-+. .-...++++.+.+++|||+.|=|++-|++.++++ +||-+|.-.
T Consensus 108 ~Al~~~~~~i~~~~pD~iEvLPG-----------v~Pkvi~~i~~~t~~piIAGGLi~t~Eev~~Al~-aGA~avSTs 173 (181)
T COG1954 108 IALEKGIKQIEKSEPDFIEVLPG-----------VMPKVIKEITEKTHIPIIAGGLIETEEEVREALK-AGAVAVSTS 173 (181)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCc-----------ccHHHHHHHHHhcCCCEEeccccccHHHHHHHHH-hCcEEEeec
Confidence 33445566677788999987553 3348899999999999999999999999999997 899888754
|
|
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.1 Score=43.06 Aligned_cols=89 Identities=16% Similarity=0.331 Sum_probs=66.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+.+. |+..=+|. .+.++..++++.+.+.|++.|.+.-++.. ..+.++.+++..+.-.++.|-
T Consensus 4 ~~~~~l~~~---~~~~v~r~-~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---------~~e~~~~~~~~~~~~~~g~gt 70 (187)
T PRK07455 4 DWLAQLQQH---RAIAVIRA-PDLELGLQMAEAVAAGGMRLIEITWNSDQ---------PAELISQLREKLPECIIGTGT 70 (187)
T ss_pred HHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCcEEeEEE
Confidence 455566443 34333675 35688999999999999999998665432 346777777766655577888
Q ss_pred CCCHHHHHHHHHhhCCcEEEEeh
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR 111 (230)
+.+.+++..+++ .|||+|+++-
T Consensus 71 vl~~d~~~~A~~-~gAdgv~~p~ 92 (187)
T PRK07455 71 ILTLEDLEEAIA-AGAQFCFTPH 92 (187)
T ss_pred EEcHHHHHHHHH-cCCCEEECCC
Confidence 999999999997 8999998865
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.23 Score=43.88 Aligned_cols=121 Identities=15% Similarity=0.171 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccH-HHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADW-NAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~-~~i~~i 75 (230)
..+.+.+.++.|...+++||++-+-.|. +..+....++.++++|+..|++-......++++ .+ -.+. +.+.+|
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI 138 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKI 138 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHH
Confidence 4566778888899999999999998875 334677889999999999999977543222221 11 1222 233444
Q ss_pred ---Hhh-CCccEEEcCCCCC------HHHHHH---HHHhhCCcEEEEehhhhhCCccccchh
Q 026945 76 ---KNA-LRIPVLANGNVRH------MEDVQK---CLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ---~~~-~~ipvi~nGgI~s------~~da~~---~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++. .+.+++.|....+ .+++.+ ...+.|||+|++ .|.+.+|.-+..+.
T Consensus 139 ~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv-~~~~~~~~ei~~~~ 199 (290)
T TIGR02321 139 AAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILI-HSRQKTPDEILAFV 199 (290)
T ss_pred HHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEEe-cCCCCCHHHHHHHH
Confidence 332 2445665553222 345442 223489999998 33345666555543
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.037 Score=52.23 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++.+.++.+.++|++.|.+-.-.. .. ..-++.++.+++.. ++||++ |+|-|.+++..+.+ .|||+|-+|
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g-----~~-~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~-aGad~i~vg 297 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHG-----HS-EGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIE-AGADAVKVG 297 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCC-----cc-hhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHH-cCCCEEEEC
Confidence 457899999999999887743211 10 12357788998887 799998 99999999999886 899999765
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.099 Score=44.49 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=30.1
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++. ..+++.+|+- +-......+++.+.++|++++|||+-
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~ 89 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHAS 89 (230)
T ss_pred HHHHHHHhcCCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEccc
Confidence 557777765 4566666662 11123445677788999999999974
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.082 Score=46.57 Aligned_cols=77 Identities=21% Similarity=0.282 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l 114 (230)
+..+-+++.|+|.+.|.-.|.-..+...+..||+.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+.
T Consensus 159 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l~ 236 (284)
T PRK09195 159 QAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVNIPLVLHGASGLPTKDIQQTIK-LGICKVNVATELK 236 (284)
T ss_pred HHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHHH
Confidence 3444455789999988766654433223467999999999999999998886544 456666765 8998888877554
|
|
| >cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.13 Score=44.44 Aligned_cols=95 Identities=8% Similarity=0.122 Sum_probs=68.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++..+++.+++.++.+|. | .. ++-|++..++++ .+
T Consensus 109 ~~~~d~~~v~~vr~~~g~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~--~~ 176 (263)
T cd03320 109 SFEEDLARLRALREALPADAKLRLDANGGWSLEEALAFLEALAAGRIEYIE-------Q--PL-PPDDLAELRRLA--AG 176 (263)
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHhhcccCCceEE-------C--CC-ChHHHHHHHHhh--cC
Confidence 3455567777777765 344444445567778888888888888777776 2 11 134677777776 78
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|.+
T Consensus 177 ~PIa~dEs~~~~~~~~~~~~~~~~d~v~~ 205 (263)
T cd03320 177 VPIALDESLRRLDDPLALAAAGALGALVL 205 (263)
T ss_pred CCeeeCCccccccCHHHHHhcCCCCEEEE
Confidence 99999888999999999998767887766
|
Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.13 Score=46.59 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=76.4
Q ss_pred HHHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.-.+.+++++++++ +.+.+-..-+|+..++..+++.+++.++.++. | .. ++-|.+..+++++.+++||
T Consensus 173 ~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~~~~PI 242 (372)
T COG4948 173 EDLERVRALREAVGDDVRLMVDANGGWTLEEAIRLARALEEYGLEWIE-------E--PL-PPDDLEGLRELRAATSTPI 242 (372)
T ss_pred HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHHHHHHhcccCcceEE-------C--CC-CccCHHHHHHHHhcCCCCE
Confidence 55678889988874 67777777789988899999999999988876 2 11 2347889999999888999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.=.+.|..++.++++...+|.|.+
T Consensus 243 a~gEs~~~~~~~~~l~~~~a~div~~ 268 (372)
T COG4948 243 AAGESVYTRWDFRRLLEAGAVDIVQP 268 (372)
T ss_pred ecCcccccHHHHHHHHHcCCCCeecC
Confidence 99999999999999998655787654
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.066 Score=46.48 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=65.8
Q ss_pred CceEE--EEECC---CC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC
Q 026945 19 NVPVS--CKIRV---FP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91 (230)
Q Consensus 19 ~~pvs--vKiR~---g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s 91 (230)
++||. +|.+. || ...+..++|+.++++|+++|.|..-... + .-+++.+..+++.+++||+.--=|.+
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~----f--~g~~~~l~~v~~~v~iPvl~kdfi~~ 122 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERF----F--QGSLEYLRAARAAVSLPVLRKDFIID 122 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEeccccc----C--CCCHHHHHHHHHhcCCCEEeeeecCC
Confidence 46774 45432 22 2346789999999999999988653221 2 22479999999999999998666778
Q ss_pred HHHHHHHHHhhCCcEEEEehhhhh
Q 026945 92 MEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 92 ~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+-++.++.. .|||+|.+.=.++.
T Consensus 123 ~~qi~~a~~-~GAD~VlLi~~~l~ 145 (260)
T PRK00278 123 PYQIYEARA-AGADAILLIVAALD 145 (260)
T ss_pred HHHHHHHHH-cCCCEEEEEeccCC
Confidence 888888776 89999977655554
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.08 Score=46.57 Aligned_cols=76 Identities=24% Similarity=0.332 Sum_probs=55.5
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+..||+.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 157 ea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 233 (282)
T TIGR01858 157 EAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVPLVLHGASDVPDEDVRRTIE-LGICKVNVATEL 233 (282)
T ss_pred HHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 44444668899999887766554433345679999999999999999999876554 45555664 788888776644
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.058 Score=51.18 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..+.++.|.++|+|.|.|. +.. +++ ..-.+.|+++++..+.+ .+..|.|-|++++..+++ .|||+|.+|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd--~a~---g~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~-aGAd~I~vg~ 313 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID--SSE---GYS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE-AGADFVKVGI 313 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec--Ccc---ccc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH-cCCCEEEECC
Confidence 356788999999999999985 221 111 12257899999987643 356699999999999997 8999998854
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.26 Score=41.87 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=70.4
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh----CCccEE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA----LRIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~----~~ipvi 84 (230)
++++.+.+.-=+|| +|. .+.+++.++++.+.+.|+..|.|.-||.. ..+.|+.+++. .+--++
T Consensus 7 ~~~~~l~~~~vi~V---vr~-~~~~~a~~~~~al~~gGi~~iEiT~~tp~---------a~~~i~~l~~~~~~~~p~~~v 73 (222)
T PRK07114 7 AVLTAMKATGMVPV---FYH-ADVEVAKKVIKACYDGGARVFEFTNRGDF---------AHEVFAELVKYAAKELPGMIL 73 (222)
T ss_pred HHHHHHHhCCEEEE---EEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------HHHHHHHHHHHHHhhCCCeEE
Confidence 44555544322444 664 46789999999999999999999887643 23666666533 232378
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+.|-|.|.++++.+++ .|++.+|.= -.||.+.+..+
T Consensus 74 GaGTVl~~e~a~~a~~-aGA~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 74 GVGSIVDAATAALYIQ-LGANFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred eeEeCcCHHHHHHHHH-cCCCEEECC---CCCHHHHHHHH
Confidence 9999999999999997 899988762 25666665443
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=1 Score=43.69 Aligned_cols=206 Identities=16% Similarity=0.181 Sum_probs=109.1
Q ss_pred CChHHHHHHHHHHhhcCCceE--EEEE--CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPV--SCKI--RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pv--svKi--R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
.|.+.+...++.+++. +..+ ++-. ..-.+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++
T Consensus 121 nd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~----l~P~~~~~lv~~lk~ 195 (593)
T PRK14040 121 NDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGL----LKPYAAYELVSRIKK 195 (593)
T ss_pred CcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHH
Confidence 3556667777777664 3332 2222 22224567889999999999999998663322 222334678888998
Q ss_pred hCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 78 ALRIPVLANGNVRH---MEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 78 ~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
.+++||-.-+--++ ......+++ .|||.|=. |++ -+||.+-.-+..... .|-. ... -.+.+.-+.+
T Consensus 196 ~~~~pi~~H~Hnt~GlA~An~laAie-AGa~~vD~ai~glG~~-~Gn~~le~vv~~L~~--~~~~-~gi-dl~~l~~is~ 269 (593)
T PRK14040 196 RVDVPLHLHCHATTGLSTATLLKAIE-AGIDGVDTAISSMSMT-YGHSATETLVATLEG--TERD-TGL-DILKLEEIAA 269 (593)
T ss_pred hcCCeEEEEECCCCchHHHHHHHHHH-cCCCEEEecccccccc-ccchhHHHHHHHHHh--cCCC-cCC-CHHHHHHHHH
Confidence 88899876553322 233344554 79987633 443 256665433221110 1111 011 1244444555
Q ss_pred HHH-HHhhCCChhHHHHHHHHHHHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 150 YLK-LCEKYPVPWRMIRSHVHKLLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 150 yl~-~~~~~~~~~~~~r~h~~~~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
|++ +...|......++..=...+.+-++|- ..+..++.+.... -++++.+-+.+.......+|+++-.+
T Consensus 270 ~~~~v~~~Y~~~~~~~~~~~~~v~~~e~PGG~~Snl~~ql~~~g~~~~~~evl~e~~~v~~~lG~~~~VTP~S 342 (593)
T PRK14040 270 YFREVRKKYAKFEGQLKGVDSRILVAQVPGGMLTNMESQLKEQGAADKLDEVLAEIPRVREDLGFIPLVTPTS 342 (593)
T ss_pred HHHHHHHHhccCCcccccCcccEEEEcCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 555 344553211111111111111125664 5667777766511 24445555555666777788877666
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.37 Score=41.98 Aligned_cols=103 Identities=15% Similarity=0.256 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCC---------------CcCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRD---------------EKDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~---------------~~~~~~~~~~~~ 70 (230)
+...++.++..-..-+..=+-.|+ +.+.+.++++.|.+.|+|.|.+-=-+.+ -.++.+....++
T Consensus 4 ~~~~F~~l~~~~~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~le 83 (265)
T COG0159 4 LDQKFAQLKAENRGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLE 83 (265)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHH
Confidence 444555555443222223345664 7889999999999999999998432211 112333344577
Q ss_pred HHHHHHhh-CCccEEEcCCC-----CCHHHHHHHHHhhCCcEEEE
Q 026945 71 AIKAVKNA-LRIPVLANGNV-----RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 71 ~i~~i~~~-~~ipvi~nGgI-----~s~~da~~~l~~~gadgVmi 109 (230)
.++++++. .++|++.=+=. .-.+...+..++.|+||+++
T Consensus 84 l~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv 128 (265)
T COG0159 84 LVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV 128 (265)
T ss_pred HHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe
Confidence 88888854 77898755422 23455566677799999999
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=43.79 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCceEEEEECCCC-----------------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFP-----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~-----------------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
..+.+++++++ .+||...+-+.+ ..+++++=++.++++|++.|.+++. +.
T Consensus 114 ~~~~i~ai~~a-~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------~~ 180 (240)
T cd06556 114 HIETLQMLTAA-AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------PV 180 (240)
T ss_pred HHHHHHHHHHc-CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------CH
Confidence 44566777665 488887776522 1346777788999999999998652 45
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.++++.+.+++|+++||.=. +|||-++
T Consensus 181 e~~~~i~~~~~~P~~~~gag~------------~~dgq~l 208 (240)
T cd06556 181 ELAKQITEALAIPLAGIGAGS------------GTDGQFL 208 (240)
T ss_pred HHHHHHHHhCCCCEEEEecCc------------CCCceEE
Confidence 889999999999999886432 7887554
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.12 Score=45.49 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
..+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+
T Consensus 157 peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~~e~~~kai~-~GI~KiNi~T~l 235 (286)
T PRK12738 157 PQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATEL 235 (286)
T ss_pred HHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 334445566789999988776665443334568999999999999999999886544 455666665 788888776644
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.27 Score=41.35 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=67.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+.+.+++.--+|| +|. .+.++++.+++.+.+.|++.|.|.-|+.. -.+.|+.+++..+=-+|+.|-|
T Consensus 6 ~~~~l~~~~vI~V---lr~-~~~e~a~~~a~Ali~gGi~~IEITl~sp~---------a~e~I~~l~~~~p~~lIGAGTV 72 (211)
T COG0800 6 ILSKLKAQPVVPV---IRG-DDVEEALPLAKALIEGGIPAIEITLRTPA---------ALEAIRALAKEFPEALIGAGTV 72 (211)
T ss_pred HHHHHHHCCeeEE---EEe-CCHHHHHHHHHHHHHcCCCeEEEecCCCC---------HHHHHHHHHHhCcccEEccccc
Confidence 3444444322444 554 45789999999999999999999887643 3589999999988778999999
Q ss_pred CCHHHHHHHHHhhCCcEEEE
Q 026945 90 RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmi 109 (230)
-+++++.++.+ .|++.+..
T Consensus 73 L~~~q~~~a~~-aGa~fiVs 91 (211)
T COG0800 73 LNPEQARQAIA-AGAQFIVS 91 (211)
T ss_pred cCHHHHHHHHH-cCCCEEEC
Confidence 99999999987 89997764
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.19 Score=43.72 Aligned_cols=99 Identities=21% Similarity=0.260 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+--.++++.+.+.+ ++||.+.+.. .+..+++++++.++++|++.+.+....... .+...-.++.+.|.+.+++|
T Consensus 50 ~Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~~~~~~~~~~~ia~~~~~p 125 (281)
T cd00408 50 EERKEVIEAVVEAVAGRVPVIAGVGA-NSTREAIELARHAEEAGADGVLVVPPYYNK---PSQEGIVAHFKAVADASDLP 125 (281)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEecCC-ccHHHHHHHHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCC
Confidence 33456666666554 5888887754 345789999999999999999998754321 11122356778888888899
Q ss_pred EE------EcCCCCCHHHHHHHHHhhCCcEE
Q 026945 83 VL------ANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 83 vi------~nGgI~s~~da~~~l~~~gadgV 107 (230)
|+ .+|---+++.+.++.+...+.|+
T Consensus 126 i~iYn~P~~tg~~l~~~~~~~L~~~~~v~gi 156 (281)
T cd00408 126 VILYNIPGRTGVDLSPETIARLAEHPNIVGI 156 (281)
T ss_pred EEEEECccccCCCCCHHHHHHHhcCCCEEEE
Confidence 87 34666678888877653334444
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.29 Score=41.06 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCceEEEEECCCCC-----hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPN-----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~-----~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++.+++.+++||..-.|-+.+ .....+.++.+.++|+++|.+....... + .+....+.++.+++..++|+
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-p--~~~~~~~~i~~~~~~g~~~i 126 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-P--DGETLAELIKRIHEEYNCLL 126 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-C--CCcCHHHHHHHHHHHhCCeE
Confidence 34555666568898643332211 0123457899999999988875432210 0 01134577778877656787
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+. ++.|++++..+.+ .|+|.+.+
T Consensus 127 iv--~v~t~~ea~~a~~-~G~d~i~~ 149 (219)
T cd04729 127 MA--DISTLEEALNAAK-LGFDIIGT 149 (219)
T ss_pred EE--ECCCHHHHHHHHH-cCCCEEEc
Confidence 76 6789999987775 89999865
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.26 Score=43.79 Aligned_cols=90 Identities=11% Similarity=0.175 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.|+.+.+-++++++.++.|+.+.+.... ....+.++.+.+.|++.|.++.. . + .+.++++++. +++
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~--~~~~~~~~~~~~~~v~~v~~~~g-------~--p--~~~i~~lk~~-g~~ 111 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS--PFVDELVDLVIEEKVPVVTTGAG-------N--P--GKYIPRLKEN-GVK 111 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC--CCHHHHHHHHHhCCCCEEEEcCC-------C--c--HHHHHHHHHc-CCE
Confidence 5788899999999888899988875422 12345667778899999987532 1 1 2578888775 778
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
|++ .|.|.+.+.++.+ .|+|+|.+
T Consensus 112 v~~--~v~s~~~a~~a~~-~GaD~Ivv 135 (307)
T TIGR03151 112 VIP--VVASVALAKRMEK-AGADAVIA 135 (307)
T ss_pred EEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 774 7889999987775 89999986
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.094 Score=45.54 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEEecC-CCCCcCCCCCcccH----HHHHHHHh---hC--Cc-cEEEcCCCCCHHHHHHHHHhhC-C
Q 026945 37 KYAKMLEDAGCSLLAVHGR-TRDEKDGKKFRADW----NAIKAVKN---AL--RI-PVLANGNVRHMEDVQKCLEETG-C 104 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~r-t~~~~~~~~~~~~~----~~i~~i~~---~~--~i-pvi~nGgI~s~~da~~~l~~~g-a 104 (230)
+=++.+.++|+|.|.+|-. |....-+....... +.+.++.+ .+ ++ -++-.|-|.+|+|+..+++++. |
T Consensus 161 e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~ 240 (268)
T PF09370_consen 161 EQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGI 240 (268)
T ss_dssp HHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTE
T ss_pred HHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCC
Confidence 4456677999999999964 43322121111122 22333333 22 33 3444556999999999999876 9
Q ss_pred cEEEEehh
Q 026945 105 EGVLSAES 112 (230)
Q Consensus 105 dgVmigR~ 112 (230)
+|..-|..
T Consensus 241 ~Gf~G~Ss 248 (268)
T PF09370_consen 241 HGFIGASS 248 (268)
T ss_dssp EEEEESTT
T ss_pred CEEecccc
Confidence 99877653
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.26 Score=41.57 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=70.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc---cEEEc
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI---PVLAN 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i---pvi~n 86 (230)
+++.+.+. |+..=+|. .+.+++..+++.+.+.|+..+.|.-|+.. -.+.|+++++..+- -+++.
T Consensus 6 ~~~~l~~~---~vi~vir~-~~~~~a~~~~~al~~~Gi~~iEit~~~~~---------a~~~i~~l~~~~~~~p~~~vGa 72 (213)
T PRK06552 6 ILTKLKAN---GVVAVVRG-ESKEEALKISLAVIKGGIKAIEVTYTNPF---------ASEVIKELVELYKDDPEVLIGA 72 (213)
T ss_pred HHHHHHHC---CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEECCCcc---------HHHHHHHHHHHcCCCCCeEEee
Confidence 44555443 33333665 35688999999999999999999887542 35889999887642 36899
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
|-|.|.++++++++ .|++.++. =-.||.+..-
T Consensus 73 GTV~~~~~~~~a~~-aGA~Fivs---P~~~~~v~~~ 104 (213)
T PRK06552 73 GTVLDAVTARLAIL-AGAQFIVS---PSFNRETAKI 104 (213)
T ss_pred eeCCCHHHHHHHHH-cCCCEEEC---CCCCHHHHHH
Confidence 99999999999997 89999884 2345555443
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCC--CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhC
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~g 103 (230)
.+..+-+++.|+|++.|.-.|.-..+. ..+..||+.+++|++.+++|++.-|+=..++++.+-+..+|
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g 227 (307)
T PRK05835 158 KEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAG 227 (307)
T ss_pred HHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhc
Confidence 344455567899999887666554332 12457999999999999999999999888886554444443
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=45.05 Aligned_cols=77 Identities=25% Similarity=0.281 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
.+..+-+++.|+|.+.|.-.|.-..+...+..||+.+++|++.+++|++.-||=.. .+++.++.+ .|+.-|=|++.+
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~~~e~~~kai~-~Gi~KiNi~T~l 235 (284)
T PRK12737 158 DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVSIPLVLHGASGVPDEDVKKAIS-LGICKVNVATEL 235 (284)
T ss_pred HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeCcHH
Confidence 34444455689999988766654433223457999999999999999998887554 455566665 899888887754
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.39 Score=42.32 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=63.0
Q ss_pred ChHHHHHHHHHHhhc-C--CceEEEEEC--C-CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALN-L--NVPVSCKIR--V-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~-~--~~pvsvKiR--~-g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
.++...+.|++++++ . +++|.+++- + +...+++++-++.+.++|+|.|.+++. ..+.+.+.++.
T Consensus 133 s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~----------~~~~~ei~~~~ 202 (285)
T TIGR02320 133 SVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHSR----------KKDPDEILEFA 202 (285)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecCC----------CCCHHHHHHHH
Confidence 345556666666654 3 455555532 2 234678999999999999999999842 12345666666
Q ss_pred hhC-----CccEEEcCC---CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 77 NAL-----RIPVLANGN---VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 77 ~~~-----~ipvi~nGg---I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.+ ++|++++.+ ..|. .+ |.+.|+..|..|-.++
T Consensus 203 ~~~~~~~p~~pl~~~~~~~~~~~~---~e-L~~lG~~~v~~~~~~~ 244 (285)
T TIGR02320 203 RRFRNHYPRTPLVIVPTSYYTTPT---DE-FRDAGISVVIYANHLL 244 (285)
T ss_pred HHhhhhCCCCCEEEecCCCCCCCH---HH-HHHcCCCEEEEhHHHH
Confidence 655 468887653 3343 33 3358999999885443
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.54 Score=40.33 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-C-hHHHHHHHHHHHHcCCCEEEEecC
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-N-LQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~-~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
.+.+.+.++.|...+++||++-+-.|. + ..+..+.++.+.++|+..|++-..
T Consensus 54 ~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 54 LTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 456678888888889999999999875 3 678899999999999999999775
|
... |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.15 Score=41.49 Aligned_cols=96 Identities=15% Similarity=0.303 Sum_probs=57.7
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipv 83 (230)
+.+.++++++.. ..+|.|-+. + .+-++.+.++|+|.|-+-.-+.++ --+.+..++.. .++.+
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~---~----~ee~~ea~~~g~d~I~lD~~~~~~--------~~~~v~~l~~~~~~v~i 130 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVE---N----LEEAEEALEAGADIIMLDNMSPED--------LKEAVEELRELNPRVKI 130 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEES---S----HHHHHHHHHTT-SEEEEES-CHHH--------HHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC---C----HHHHHHHHHhCCCEEEecCcCHHH--------HHHHHHHHhhcCCcEEE
Confidence 345566666654 234666665 2 233555667999999886532211 11333334332 24889
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.++||| +++.+.++-+ +|+|.+.+|.-...-|++
T Consensus 131 e~SGGI-~~~ni~~ya~-~gvD~isvg~~~~~a~~~ 164 (169)
T PF01729_consen 131 EASGGI-TLENIAEYAK-TGVDVISVGSLTHSAPPL 164 (169)
T ss_dssp EEESSS-STTTHHHHHH-TT-SEEEECHHHHSBE--
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEcChhhcCCccc
Confidence 999999 5788888775 999999999866665553
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.28 Score=43.57 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEe------cCCC-CCcC-----------------------------------CCCCcc
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVH------GRTR-DEKD-----------------------------------GKKFRA 67 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh------~rt~-~~~~-----------------------------------~~~~~~ 67 (230)
.|.+-+.+++++++++|+.+|.+. ||.. +.++ ...+..
T Consensus 131 kdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~~l~lknfe~~~~~~v~~~~~sg~~~~~~~~id~Sl 210 (363)
T KOG0538|consen 131 KDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPKNLTLKNFEGLKLTEVEEAGDSGLAAYVSSQIDPSL 210 (363)
T ss_pred CchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCcccccccccccccccCCcccchhhhhhhhcCCCCCC
Confidence 344568899999999999998774 2110 0000 001235
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+|+-|+.++...+.||+.-| |-+.+|+..+.+ .|++|+.+.
T Consensus 211 ~W~Di~wLr~~T~LPIvvKG-ilt~eDA~~Ave-~G~~GIIVS 251 (363)
T KOG0538|consen 211 SWKDIKWLRSITKLPIVVKG-VLTGEDARKAVE-AGVAGIIVS 251 (363)
T ss_pred ChhhhHHHHhcCcCCeEEEe-ecccHHHHHHHH-hCCceEEEe
Confidence 79999999999999999965 668999999997 899999884
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.16 Score=45.05 Aligned_cols=88 Identities=22% Similarity=0.337 Sum_probs=60.4
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~ga 104 (230)
.|.+.+.++++.+.+.|++.|.+-|-|.+.. ..+..=..+.++.+++.+ .+|||+.-|=.+.+++.+ .-+..|+
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~-~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESP-TLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccch-hcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 3567788999999999999999999877632 111111234556666665 489887544444444443 3345899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
||+|+--..+..|.
T Consensus 101 d~il~v~PyY~k~~ 114 (299)
T COG0329 101 DGILVVPPYYNKPS 114 (299)
T ss_pred CEEEEeCCCCcCCC
Confidence 99999988888776
|
|
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.15 Score=44.89 Aligned_cols=87 Identities=14% Similarity=0.263 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+.|-|.+... .+..=..+.++.+.+.+ ++||+++=+-.|.+++.+.. +..|+|
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~-Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS-LTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc-CCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999998776421 11111234455555544 58998665555666665433 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 98 ~v~v~pP~y~~~~ 110 (294)
T TIGR02313 98 AAMVIVPYYNKPN 110 (294)
T ss_pred EEEEcCccCCCCC
Confidence 9999988777663
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.22 Score=43.77 Aligned_cols=93 Identities=13% Similarity=0.166 Sum_probs=57.9
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh---CCccEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA---LRIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~---~~ipvi 84 (230)
+.++.++... ..+|.|-++ +.+-+..+.++|+|.|-+-..+.++ --+.+..+++. -++.+.
T Consensus 171 ~av~~~r~~~~~~kIeVEv~-------~leea~~a~~agaDiI~LDn~~~e~--------l~~~v~~l~~~~~~~~~~le 235 (278)
T PRK08385 171 EAIRRAKEFSVYKVVEVEVE-------SLEDALKAAKAGADIIMLDNMTPEE--------IREVIEALKREGLRERVKIE 235 (278)
T ss_pred HHHHHHHHhCCCCcEEEEeC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHHhcCcCCCEEEE
Confidence 4445555432 244555444 3344566668999988875543221 11233334332 257899
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 236 aSGGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 267 (278)
T PRK08385 236 VSGGI-TPENIEEYAK-LDVDVISLGALTHSVRN 267 (278)
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEeChhhcCCCc
Confidence 99999 7999998776 99999999975553444
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.5 Score=41.47 Aligned_cols=108 Identities=20% Similarity=0.309 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCC-CC---------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVF-PN---------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNA 71 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g-~~---------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~ 71 (230)
.+..+++++-.+. .+++|-.=+ +++ .. ..+..+..+-+++.|+|.|.|.-.|.-..+.. .+..||+.
T Consensus 109 i~~t~~vv~~ah~-~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~ 187 (276)
T cd00947 109 VAKTKEVVELAHA-YGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDR 187 (276)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHH
Confidence 3455555555544 356655443 221 10 11233344445567999998765554433222 34579999
Q ss_pred HHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 72 IKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+++|.+.+++|++.-|+=..+ +++.++.+ .|+.-|=+++.+
T Consensus 188 L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 229 (276)
T cd00947 188 LKEIAERVNVPLVLHGGSGIPDEQIRKAIK-LGVCKININTDL 229 (276)
T ss_pred HHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeChHH
Confidence 999999999999999987665 55677775 888888777654
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=41.59 Aligned_cols=36 Identities=11% Similarity=0.217 Sum_probs=26.2
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..+...|||+ ++.+... ...|+|.+++||++...++
T Consensus 164 ~~i~V~gGI~-~~~~~~~-~~~~ad~~VvGr~I~~a~d 199 (216)
T PRK13306 164 FKVSVTGGLV-VEDLKLF-KGIPVKTFIAGRAIRGAAD 199 (216)
T ss_pred CeEEEcCCCC-HhhHHHH-hcCCCCEEEECCcccCCCC
Confidence 3478889996 5555554 4469999999998776655
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.18 Score=44.49 Aligned_cols=76 Identities=13% Similarity=0.201 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~ 112 (230)
.+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|+..
T Consensus 159 eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~~~e~~~~ai~-~GI~KiNi~T~ 235 (286)
T PRK08610 159 KECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTGLPLVLHGGTGIPTKDIQKAIP-FGTAKINVNTE 235 (286)
T ss_pred HHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHH-CCCeEEEeccH
Confidence 344444567899999887766654433234679999999999999999999987665 56666765 78887766553
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.52 Score=40.83 Aligned_cols=97 Identities=16% Similarity=0.208 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ ++.||-+|--.+-+.+++.-.++.+.+.|-..|.+--|... .+|.. ..|+..+..+++. +.|||.-
T Consensus 107 ~LL~a~g~-t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~t--f~y~r~~~D~~~ip~~k~~-~~PVi~Dp 182 (258)
T TIGR01362 107 DLLVAAAK-TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTS--FGYNNLVVDMRSLPIMREL-GCPVIFDA 182 (258)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--cCCCCcccchhhhHHHHhc-CCCEEEeC
Confidence 45666644 58999999887778889999999999999988888766542 12322 4588888888875 8999852
Q ss_pred --------------CCCCCH--HHHHHHHHhhCCcEEEEe
Q 026945 87 --------------GNVRHM--EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 --------------GgI~s~--~da~~~l~~~gadgVmig 110 (230)
||-+.. .-+...+. .|+||+||=
T Consensus 183 SHsvq~pg~~g~~s~G~r~~v~~la~AAvA-~GaDGl~iE 221 (258)
T TIGR01362 183 THSVQQPGGLGGASGGLREFVPTLARAAVA-VGIDGLFME 221 (258)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHH-hCCCEEEEE
Confidence 343332 22233444 799999993
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.46 Score=42.72 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHHHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
-.+.++++++.++ +.+.+-..-+|+..++ .+++.+++.++.+|. | .. .+.|++..+++++.+++||.+
T Consensus 165 d~~~l~~vr~~~g~~~l~lDaN~~~~~~~a-~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~~pia~ 233 (354)
T cd03317 165 DVEPLKAVRERFPDIPLMADANSAYTLADI-PLLKRLDEYGLLMIE-------Q--PL-AADDLIDHAELQKLLKTPICL 233 (354)
T ss_pred HHHHHHHHHHHCCCCeEEEECCCCCCHHHH-HHHHHhhcCCccEEE-------C--CC-ChhHHHHHHHHHhhcCCCEEe
Confidence 3456777777653 2233333335666555 467888887777765 2 11 234788899999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.+++++..+++...+|.+.+
T Consensus 234 dEs~~~~~~~~~~~~~~~~d~~~i 257 (354)
T cd03317 234 DESIQSAEDARKAIELGACKIINI 257 (354)
T ss_pred CCccCCHHHHHHHHHcCCCCEEEe
Confidence 888999999999998666787765
|
NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. |
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=2.4 Score=40.29 Aligned_cols=103 Identities=14% Similarity=0.139 Sum_probs=66.3
Q ss_pred CChHHHHHHHHHHhhcCCce-EEEEECCC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLNVP-VSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~p-vsvKiR~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|.+.+...++++++.-... ..+-..++ .+.+..+++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 ndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGl----l~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 121 NDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAAL----LKPQPAYDIVKGIKEA 196 (499)
T ss_pred ChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccC----CCHHHHHHHHHHHHHh
Confidence 45667777888887764322 22222222 35677899999999999999998664332 2223346788899998
Q ss_pred C--CccEEEcCCCC---CHHHHHHHHHhhCCcEEEE
Q 026945 79 L--RIPVLANGNVR---HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~--~ipvi~nGgI~---s~~da~~~l~~~gadgVmi 109 (230)
+ ++||-.-+--+ .......+++ .|||.|=.
T Consensus 197 ~~~~ipI~~H~Hnt~GlA~An~laAie-AGad~vDt 231 (499)
T PRK12330 197 CGEDTRINLHCHSTTGVTLVSLMKAIE-AGVDVVDT 231 (499)
T ss_pred CCCCCeEEEEeCCCCCcHHHHHHHHHH-cCCCEEEe
Confidence 8 68987665322 2333445554 79987643
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.75 Score=38.66 Aligned_cols=92 Identities=13% Similarity=0.209 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+++.+.++++.+++..+.|+.+.+..........++++.+.++|++.|++++. . ..+.++.+++ .+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~---------~~~~~~~~~~-~~i~ 104 (236)
T cd04730 37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG--P---------PAEVVERLKA-AGIK 104 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--C---------CHHHHHHHHH-cCCE
Confidence 46777788888887655676666655331135668889999999999999764 1 1345555554 4677
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.. +.+.+.+..+.+ .|+|++.+
T Consensus 105 ~i~~--v~~~~~~~~~~~-~gad~i~~ 128 (236)
T cd04730 105 VIPT--VTSVEEARKAEA-AGADALVA 128 (236)
T ss_pred EEEe--CCCHHHHHHHHH-cCCCEEEE
Confidence 7654 667888877665 79999865
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.61 Score=41.76 Aligned_cols=101 Identities=15% Similarity=0.236 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEE-CCC-C-C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-----CCcc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKI-RVF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-----KFRA 67 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKi-R~g-~-~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-----~~~~ 67 (230)
.+..+++++..+. .+++|-.=+ +++ . + ..+..+..+-+++.|+|.+.+.-.|.-..+.. .+..
T Consensus 125 I~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~L 203 (321)
T PRK07084 125 VALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPL 203 (321)
T ss_pred HHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCcc
Confidence 3445555555543 466655444 222 0 0 11233444445568999998866655433221 2457
Q ss_pred cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 68 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 68 ~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
||+.+++|++.+ ++|++.-|+=..+++..+.+...|-+
T Consensus 204 d~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 204 RFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 999999999999 69999999887676655555555543
|
|
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.22 Score=44.12 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+.. ..+..=..+.++.+.+.+ ++||+++-+- +.+++.+.. +..|+|
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~~-~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~~~~~a~~~Gad 103 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEFF-SLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIEYAQAAERAGAD 103 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 556788999999999999999988776642 121111234455555554 5899866554 666665444 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 104 av~~~pP~y~~~ 115 (303)
T PRK03620 104 GILLLPPYLTEA 115 (303)
T ss_pred EEEECCCCCCCC
Confidence 999977655544
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.8 Score=40.86 Aligned_cols=206 Identities=12% Similarity=0.099 Sum_probs=105.4
Q ss_pred CChHHHHHHHHHHhhcCC---ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 2 DNLPLVKSLVEKLALNLN---VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~---~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.|.+.+...++.+++.-. .-++.-.....+.+-..++++.+.+.|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 129 nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~----l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 129 NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGI----LTPKAAKELVSGIKAM 204 (468)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHhc
Confidence 466777777887776421 222222222224566889999999999999998664322 1222346778888887
Q ss_pred CCccEEEcCCCCC---HHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 LRIPVLANGNVRH---MEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~~ipvi~nGgI~s---~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
.++||-.-+--+. ......+++ .|||.|=. |+++ +||.+=.-+.... ..|-.+ ... .+.+.-+.+|
T Consensus 205 ~~~pi~~H~Hnt~GlA~An~laAie-AGad~vD~ai~g~g~ga-gN~~tE~lv~~L~--~~g~~t-giD-l~~L~~~a~~ 278 (468)
T PRK12581 205 TNLPLIVHTHATSGISQMTYLAAVE-AGADRIDTALSPFSEGT-SQPATESMYLALK--EAGYDI-TLD-ETLLEQAANH 278 (468)
T ss_pred cCCeEEEEeCCCCccHHHHHHHHHH-cCCCEEEeeccccCCCc-CChhHHHHHHHHH--hcCCCC-CcC-HHHHHHHHHH
Confidence 7899876653322 333445554 79987633 3332 3554322111100 011110 111 2233333444
Q ss_pred HHHH-hhCCCh--h-HHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVP--W-RMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~--~-~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++.. ..|... + ..++.. -.-|.|. +|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 279 ~~~vr~~y~~~~~~~~~~~~~d~~v~~hq-iPGGm~snl~~Ql~~~g~~dr~~ev~~e~~~V~~~lG~p~~VTP~S 353 (468)
T PRK12581 279 LRQARQKYLADGILDPSLLFPDPRTLQYQ-VPGGMLSNMLSQLKQANAESKLEEVLAEVPRVRKDLGYPPLVTPLS 353 (468)
T ss_pred HHHHHHHhcccccCCCccCCCCcceeeCC-CCcchHHHHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCCEECChh
Confidence 4422 233210 0 001000 0011122 444 24567777666511 25666666666777888888887766
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.22 Score=43.56 Aligned_cols=86 Identities=16% Similarity=0.184 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+.|-|.+.. ..+..=..+.++.+.+.+ ++||+++=+-.+.+++.+.. +..|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gad 98 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQ-LMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMH 98 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCC
Confidence 556788899999999999999999877632 111111233445455544 48988664444555555443 358999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 99 av~~~~P~y~~~ 110 (280)
T PLN02417 99 AALHINPYYGKT 110 (280)
T ss_pred EEEEcCCccCCC
Confidence 999987766665
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.4 Score=37.82 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH----Hh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV----KN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i----~~ 77 (230)
.|..+.+|++.+... .|||..+-=.+ +......-+..+..+|+|+|-|---... . .....+.+..+ +.
T Consensus 38 ~p~vir~Iv~~~~~~--~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~~~~---~--~~~~~~~~~~v~~a~~~ 110 (238)
T PRK02227 38 FPWVIREIVAAVPGR--KPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLYGGK---T--AEEAVEVMKAVVRAVKD 110 (238)
T ss_pred CHHHHHHHHHHhCCC--CCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCCCCC---c--HHHHHHHHHHHHHhhhh
Confidence 355677777776543 79998875322 2334445566677899999987431100 0 01122333333 22
Q ss_pred h-CCccEEEcC--CCC-----CHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 78 A-LRIPVLANG--NVR-----HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 78 ~-~~ipvi~nG--gI~-----s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
. .+..|++.+ |-. ++.++.....+.|++++|+=.+.=..-.+|.-+ -.+.+.+
T Consensus 111 ~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l-------------------~~~~L~~ 171 (238)
T PRK02227 111 LDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHM-------------------DEEELAE 171 (238)
T ss_pred cCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhC-------------------CHHHHHH
Confidence 2 246666665 322 677888888889999999944222222222211 1345778
Q ss_pred HHHHHhhCC
Q 026945 150 YLKLCEKYP 158 (230)
Q Consensus 150 yl~~~~~~~ 158 (230)
|.+.+..+|
T Consensus 172 Fv~~ar~~G 180 (238)
T PRK02227 172 FVAEARSHG 180 (238)
T ss_pred HHHHHHHcc
Confidence 888887776
|
|
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.1 Score=43.49 Aligned_cols=201 Identities=17% Similarity=0.221 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +.-+.+-+- .+ .+.+..+++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~----~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 121 DVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGL----LTPYAAYELVKALKEE 195 (592)
T ss_pred hHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCC----cCHHHHHHHHHHHHHh
Confidence 445556666666553 333332221 12 25677889999999999999998653322 2222346778888888
Q ss_pred CCccEEEcC----CCCCHHHHHHHHHhhCCcEEE-----EehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHH
Q 026945 79 LRIPVLANG----NVRHMEDVQKCLEETGCEGVL-----SAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVE 149 (230)
Q Consensus 79 ~~ipvi~nG----gI~s~~da~~~l~~~gadgVm-----igR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 149 (230)
+++||-.-. |. .......+++ .|||.|= +|+++ +||.+-.-+.... ..|.. + .--.+.+.-+.+
T Consensus 196 ~~~pi~~H~Hnt~Gl-a~An~laAv~-aGad~vD~ai~g~g~~a-gn~~~e~vv~~L~--~~g~~-~-~idl~~l~~~s~ 268 (592)
T PRK09282 196 VDLPVQLHSHCTSGL-APMTYLKAVE-AGVDIIDTAISPLAFGT-SQPPTESMVAALK--GTPYD-T-GLDLELLFEIAE 268 (592)
T ss_pred CCCeEEEEEcCCCCc-HHHHHHHHHH-hCCCEEEeeccccCCCc-CCHhHHHHHHHHH--hCCCC-C-ccCHHHHHHHHH
Confidence 888887643 33 2344455564 7998763 34433 4666544322111 01111 1 111234444445
Q ss_pred HHH-HHhhCCC---hhHHHHHHHHHHHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 150 YLK-LCEKYPV---PWRMIRSHVHKLLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 150 yl~-~~~~~~~---~~~~~r~h~~~~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
|++ ....|.. ........+ |.+ -++|- ..++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 269 ~~~~~~~~y~~~~~~~~~~~~~v--~~~-~~pGg~~snl~~q~~~~g~~d~~~~vl~e~~~v~~~lG~~~~VTP~S 341 (592)
T PRK09282 269 YFREVRKKYKQFESEFTIVDTRV--LIH-QVPGGMISNLVSQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 341 (592)
T ss_pred HHHHHHHHhhcCCCccccCCccE--EEE-cCCCcHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHcCCCCeECChh
Confidence 554 3333421 111111111 122 25664 5666677666411 14444444445666777777776655
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.47 Score=38.24 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=59.8
Q ss_pred CceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE-c-CCCC-
Q 026945 19 NVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA-N-GNVR- 90 (230)
Q Consensus 19 ~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~-n-GgI~- 90 (230)
++||.+++.... ...++.+.++.+.++|++++.++.-.... .......-.++++++++.+ ++|++. | .+-.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~ 126 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSL-KEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLK 126 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHH-hCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCC
Confidence 489998886532 15789999999999999999997532110 0000112257777888874 889773 2 2222
Q ss_pred CHHHHHHH---HHhhCCcEEEEehh
Q 026945 91 HMEDVQKC---LEETGCEGVLSAES 112 (230)
Q Consensus 91 s~~da~~~---l~~~gadgVmigR~ 112 (230)
+++...++ +.+.|+|+|=...+
T Consensus 127 ~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 127 TADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 66666654 34689999866544
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.23 Score=43.65 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||+++-+. +.+++.+.. ++.|||
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~-Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad 96 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGTGEFFS-LTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKAGAD 96 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCccc-CCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHhCCC
Confidence 5567788999999999999999987776431 11111233445555554 5899986665 666665444 458999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+.-..+..|
T Consensus 97 ~v~~~pP~y~~~ 108 (289)
T cd00951 97 GILLLPPYLTEA 108 (289)
T ss_pred EEEECCCCCCCC
Confidence 999987766554
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.3 Score=46.31 Aligned_cols=207 Identities=16% Similarity=0.149 Sum_probs=110.6
Q ss_pred CChHHHHHHHHHHhhcCC---ceEEEE------ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLN---VPVSCK------IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~---~pvsvK------iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+.+.+...++.+++.-. +-++.- .|.-.+.+-.+++++.++++|++.|.+-.-... ..+..-.+.+
T Consensus 651 nd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~----l~P~~~~~lv 726 (1146)
T PRK12999 651 NWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGL----LKPAAAYELV 726 (1146)
T ss_pred ChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC----CCHHHHHHHH
Confidence 345667777777776521 223322 232245667889999999999999998664322 2233456888
Q ss_pred HHHHhhCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhh----hhCCccccchhhhhhccCccccCCCChHHHHH
Q 026945 73 KAVKNALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESL----LENPALFAGFRTAEWIVGSEEISKDGNLDQAD 145 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~----l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~ 145 (230)
+.+++.+++||-.-+-=++ ......+++ .|||.|=.+=.- -+||.+-.-+.... ..|-. + .--.+.+.
T Consensus 727 ~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~-aGad~vD~av~glg~~tgn~~le~vv~~L~--~~~~~-t-~idl~~l~ 801 (1146)
T PRK12999 727 SALKEEVDLPIHLHTHDTSGNGLATYLAAAE-AGVDIVDVAVASMSGLTSQPSLNSIVAALE--GTERD-T-GLDLDAIR 801 (1146)
T ss_pred HHHHHHcCCeEEEEeCCCCchHHHHHHHHHH-hCCCEEEecchhhcCCcCCHHHHHHHHHHH--hcCCC-C-CcCHHHHH
Confidence 9999999999987664333 233344554 799977443332 23454322211111 01111 0 11123444
Q ss_pred HHHHHHHHHhh-CCChhHHHHHHHH-HHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 146 LLVEYLKLCEK-YPVPWRMIRSHVH-KLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 146 ~~~~yl~~~~~-~~~~~~~~r~h~~-~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
-+.+|++-.+. |......++..-. -|.|. .|| ...++.++.+.... -++++.+.+.+..+....+|+++-.+
T Consensus 802 ~~s~~~~~~r~~y~~~~~~~~~~~~~v~~~~-~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~~G~~~~VTP~S 878 (1146)
T PRK12999 802 KLSPYWEAVRPYYAPFESGLKSPTTEVYLHE-MPGGQYSNLKQQARALGLGDRFEEVKEMYAAVNRMFGDIVKVTPSS 878 (1146)
T ss_pred HHHHHHHHHHhHhhccCCCCCCCCcCeEEec-CCCcccchHHHHHHHCChHhHHHHHHHHHHHHHHHcCCCceeCccc
Confidence 45555554332 3111011111111 11122 444 34567777665411 26677777777778888888877666
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.31 Score=40.98 Aligned_cols=102 Identities=20% Similarity=0.278 Sum_probs=67.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
.++.+++..++||.==+++....+ .-.......-++.+-+-.....+..+.....||+.+... ....|++..||+
T Consensus 89 ~~~~l~~~~~~~v~kai~v~~~~~---~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~--~~~~~~~LAGGL 163 (208)
T COG0135 89 YIDQLKEELGVPVIKAISVSEEGD---LELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL--RLSKPVMLAGGL 163 (208)
T ss_pred HHHHHHhhcCCceEEEEEeCCccc---hhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc--cccCCEEEECCC
Confidence 345555554677765566543211 112223344578888776655443343335799998877 567899999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+++++.++++.....||=+.+|.-.+|
T Consensus 164 -~p~NV~~ai~~~~p~gvDvSSGVE~~p 190 (208)
T COG0135 164 -NPDNVAEAIALGPPYGVDVSSGVESSP 190 (208)
T ss_pred -CHHHHHHHHHhcCCceEEeccccccCC
Confidence 699999999844349999999988888
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.21 Score=44.15 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+..+.++|+|.|-+-..+. +.++++.+.+ ++.+.++||| +++.+.++-+ +|+|.+.+|.-.
T Consensus 207 leea~~a~~agaDiImLDnmsp------------e~l~~av~~~~~~~~leaSGGI-~~~ni~~yA~-tGVD~Is~galt 272 (290)
T PRK06559 207 LAAAEEAAAAGADIIMLDNMSL------------EQIEQAITLIAGRSRIECSGNI-DMTTISRFRG-LAIDYVSSGSLT 272 (290)
T ss_pred HHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhcCceEEEEECCC-CHHHHHHHHh-cCCCEEEeCccc
Confidence 3445666689999999755433 3333332222 5789999999 6888888775 999999998744
Q ss_pred hhCCc
Q 026945 114 LENPA 118 (230)
Q Consensus 114 l~nP~ 118 (230)
..-|+
T Consensus 273 hsa~~ 277 (290)
T PRK06559 273 HSAKS 277 (290)
T ss_pred cCCcc
Confidence 43343
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.27 Score=42.10 Aligned_cols=83 Identities=20% Similarity=0.377 Sum_probs=55.4
Q ss_pred CC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHHhhCCccEEEcCCC--
Q 026945 28 VF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVKNALRIPVLANGNV-- 89 (230)
Q Consensus 28 ~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~~~~~ipvi~nGgI-- 89 (230)
.| ++.+.+.++++.++++|+|+|++---..+.. ++..-..-++.++++++..++|++.=+-.
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~ 87 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNP 87 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCH
Confidence 44 4677899999999999999999962111100 01101123677888888778997653222
Q ss_pred -CC--HHHHHHHHHhhCCcEEEEe
Q 026945 90 -RH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 90 -~s--~~da~~~l~~~gadgVmig 110 (230)
.+ .+...+.+.+.|+||+.+-
T Consensus 88 ~~~~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 88 ILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHhCHHHHHHHHHHCCCcEEEEC
Confidence 22 3777777778999999994
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.27 Score=42.66 Aligned_cols=86 Identities=27% Similarity=0.384 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.-+-.+.+++.+ ..++.|+|
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 556788999999999999999988776542 111111234455555655 589886655555555554 33457999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 95 ~v~v~pP~y~~~ 106 (281)
T cd00408 95 GVLVVPPYYNKP 106 (281)
T ss_pred EEEECCCcCCCC
Confidence 999987666554
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.24 Score=43.45 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-hCCccE
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~ipv 83 (230)
-+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+|..+.++ --+.++.+++ ..++.+
T Consensus 174 ~i~~av~~~r~~~~~~kIeVEv~-------tleea~ea~~~GaDiI~lDn~~~e~--------l~~~v~~l~~~~~~~~l 238 (277)
T TIGR01334 174 DWGGAIGRLKQTAPERKITVEAD-------TIEQALTVLQASPDILQLDKFTPQQ--------LHHLHERLKFFDHIPTL 238 (277)
T ss_pred cHHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCcCEEEECCCCHHH--------HHHHHHHHhccCCCEEE
Confidence 4567777777653 344555544 3455666778999999999644332 1234444442 235789
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.++||| +++.+.++-+ +|+|.+++|--....|
T Consensus 239 easGGI-~~~ni~~ya~-~GvD~is~gal~~a~~ 270 (277)
T TIGR01334 239 AAAGGI-NPENIADYIE-AGIDLFITSAPYYAAP 270 (277)
T ss_pred EEECCC-CHHHHHHHHh-cCCCEEEeCcceecCc
Confidence 999999 6899988775 9999999986433333
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.96 Score=39.63 Aligned_cols=98 Identities=19% Similarity=0.266 Sum_probs=68.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhh-CCccEEEc
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNA-LRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~-~~ipvi~n 86 (230)
+++.++.+ ++.||-+|--.+-+.+++.-.++.+.+.|...|.+--|...- +|. -..|...+..+++. .++|||.-
T Consensus 121 dLL~a~~~-t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~f--gy~~~~~D~~~ip~mk~~~t~lPVi~D 197 (281)
T PRK12457 121 DLVVAIAK-TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSF--GYDNLVVDMLGFRQMKRTTGDLPVIFD 197 (281)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCC--CCCCcccchHHHHHHHhhCCCCCEEEe
Confidence 45566644 589999998766667889999999999999888887664331 222 24688888889886 58999852
Q ss_pred ---------------CCCCC--HHHHHHHHHhhCCcEEEEe
Q 026945 87 ---------------GNVRH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 ---------------GgI~s--~~da~~~l~~~gadgVmig 110 (230)
||-+. +.-+...+. .|+||+|+=
T Consensus 198 pSHsvq~p~~~g~~s~G~re~v~~larAAvA-~GaDGl~iE 237 (281)
T PRK12457 198 VTHSLQCRDPLGAASGGRRRQVLDLARAGMA-VGLAGLFLE 237 (281)
T ss_pred CCccccCCCCCCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE
Confidence 33322 122334444 799999993
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=94.47 E-value=3.1 Score=40.43 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=106.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEE----ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCK----IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvK----iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
.|.+.+..-++++++.- .-+-.- +..-.+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++
T Consensus 120 nd~~n~~~~i~~~k~~G-~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~----l~P~~v~~lv~alk~ 194 (596)
T PRK14042 120 NDARNLKVAIDAIKSHK-KHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGL----LTPTVTVELYAGLKQ 194 (596)
T ss_pred cchHHHHHHHHHHHHcC-CEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccC----CCHHHHHHHHHHHHh
Confidence 35566666677776643 222111 121235678899999999999999998664322 223345688889999
Q ss_pred hCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhh----hCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 78 ALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLL----ENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 78 ~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l----~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
.+++||-.-+--+. ......+++ .|||.|=.+=+-+ +||.+-.-+...+ ..|.. + .--.+.+.-+.+|
T Consensus 195 ~~~ipi~~H~Hnt~Gla~an~laAie-aGad~iD~ai~glGg~tGn~~tE~lv~~L~--~~g~~-t-gidl~~l~~~~~~ 269 (596)
T PRK14042 195 ATGLPVHLHSHSTSGLASICHYEAVL-AGCNHIDTAISSFSGGASHPPTEALVAALT--DTPYD-T-ELDLNILLEIDDY 269 (596)
T ss_pred hcCCEEEEEeCCCCCcHHHHHHHHHH-hCCCEEEeccccccCCCCcHhHHHHHHHHH--hcCCC-C-CCCHHHHHHHHHH
Confidence 88999876653322 333345554 7998763322222 5555432221111 01111 1 1112344445555
Q ss_pred HHHH-hhCCChhHHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVPWRMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~~~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++-. ..|..-...++.. ..-|.|. .|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 270 ~~~vr~~y~~~~~~~~~~~~~v~~hq-~PGG~~snl~~Ql~~~g~~d~~~ev~~e~~~v~~~lG~~~~VTP~S 341 (596)
T PRK14042 270 FKAVRKKYSQFESEAQNIDPRVQLYQ-VPGGMISNLYNQLKEQNALDKMDAVHKEIPRVRKDLGYPPLVTPTS 341 (596)
T ss_pred HHHHHHHHhhcCCccccCCcceeecC-CCcchhhHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCeECCcC
Confidence 5533 2331100000000 0011122 444 34567777666411 25666666666777777788776665
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.3 Score=43.05 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEEC-CC-C-C-----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC--CCccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIR-VF-P-N-----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFRAD 68 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~-----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~~~ 68 (230)
...+++++-.+. .+++|-.=+- ++ . + ..+..+..+-+++.|+|.|.|.-.|.-..+.. .+..|
T Consensus 114 ~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld 192 (287)
T PF01116_consen 114 AITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLD 192 (287)
T ss_dssp HHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--
T ss_pred HHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccC
Confidence 344455544433 4677766552 22 1 0 01344555666789999999876665543332 44578
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHH-HHHHHHHhhCCcEEEEehhhh
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHME-DVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~-da~~~l~~~gadgVmigR~~l 114 (230)
++.+++|++.+ ++|++.-||=..++ ++.++.+ .|+.-|=+++.+.
T Consensus 193 ~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 193 FDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIK-NGISKINIGTELR 239 (287)
T ss_dssp HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHH-TTEEEEEESHHHH
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHH-cCceEEEEehHHH
Confidence 99999999999 99999999866555 6777775 7888887776543
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.2 Score=41.74 Aligned_cols=100 Identities=13% Similarity=0.188 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.++++.+++. +..+.+-+.. + .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 121 d~~n~~~~v~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~----l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 121 DVRNLETAVKATKKA-GGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGI----LTPYVAYELVKRIKEA 195 (448)
T ss_pred cHHHHHHHHHHHHHc-CCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC----CCHHHHHHHHHHHHHh
Confidence 445566777777654 4433332222 2 24567889999999999999998764332 1222346788889998
Q ss_pred CCccEEEcC----CCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANG----NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nG----gI~s~~da~~~l~~~gadgVmi 109 (230)
+++||-.-+ |. ....+..+++ .|||.|=.
T Consensus 196 ~~~pi~~H~Hnt~Gl-A~AN~laAie-aGad~vD~ 228 (448)
T PRK12331 196 VTVPLEVHTHATSGI-AEMTYLKAIE-AGADIIDT 228 (448)
T ss_pred cCCeEEEEecCCCCc-HHHHHHHHHH-cCCCEEEe
Confidence 889987644 33 2344445564 79997743
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.29 Score=42.98 Aligned_cols=87 Identities=13% Similarity=0.124 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+...++++.+.+ .|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||+++=+-.+.+++.+.. ++.||
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~-~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Ga 100 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAF-LLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGY 100 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccc-cCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 55678899999999 9999999999776632 121111234455555554 48998765555666665433 35899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-+.+..|.
T Consensus 101 d~v~v~~P~y~~~~ 114 (293)
T PRK04147 101 DAISAVTPFYYPFS 114 (293)
T ss_pred CEEEEeCCcCCCCC
Confidence 99999988776663
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.29 Score=43.08 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+..|++.+++|++.+++|++.-|+=.. .+++.++.+ .|+.-|=|++.+
T Consensus 159 ~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~~ 235 (284)
T PRK12857 159 EARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVNIPIVLHGSSGVPDEAIRKAIS-LGVRKVNIDTNI 235 (284)
T ss_pred HHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEeCcHH
Confidence 4444456789999988766654333223457999999999999999999887554 455666665 788888776644
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.22 Score=43.24 Aligned_cols=88 Identities=17% Similarity=0.297 Sum_probs=58.6
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHH-hhCCccEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVK-NALRIPVL 84 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~-~~~~ipvi 84 (230)
+..=+-.| ++.+.+.++++.+.+.|||.|.+-=-..+-. ++.+-.--++.+++++ +..++|++
T Consensus 14 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~v 93 (258)
T PRK13111 14 LIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIV 93 (258)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 44445565 5778899999999999999999843221100 1111112367778887 44678977
Q ss_pred EcCCCC-----CHHHHHHHHHhhCCcEEEE
Q 026945 85 ANGNVR-----HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 ~nGgI~-----s~~da~~~l~~~gadgVmi 109 (230)
.=+=.+ ..+...+.+++.|+||+.+
T Consensus 94 lm~Y~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 94 LMTYYNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred EEecccHHhhcCHHHHHHHHHHcCCcEEEE
Confidence 655332 4566777777899999999
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.7 Score=40.66 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CC--ccc----HHHHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KF--RAD----WNAIKAV 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~--~~~----~~~i~~i 75 (230)
.+.+.+.++.|..++++||+|-+-.|+. ..+..+.++.++++|+..+++-.-....+.|. .+ -.+ -+.|+.+
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa 142 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAA 142 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHH
Confidence 4567788888999999999999988763 56788899999999999999976544322222 11 122 2334444
Q ss_pred HhhC-CccEEEcCC-----CCCHHHHHH---HHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 76 KNAL-RIPVLANGN-----VRHMEDVQK---CLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 76 ~~~~-~ipvi~nGg-----I~s~~da~~---~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
++.. +.+++.+.- +...+++.+ ...+.|||+|-. ..+.++.-|..+..
T Consensus 143 ~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~--~al~~~e~i~~f~~ 199 (289)
T COG2513 143 VEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFP--EALTDLEEIRAFAE 199 (289)
T ss_pred HHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEcc--ccCCCHHHHHHHHH
Confidence 5543 345554431 112444432 223489998865 46666777766543
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=94.37 E-value=1.6 Score=45.67 Aligned_cols=210 Identities=14% Similarity=0.050 Sum_probs=109.5
Q ss_pred CChHHHHHHHHHHhhcCCc---eEEEE------ECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNV---PVSCK------IRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~---pvsvK------iR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.|.+-+...++++++.-.. -++.- .|.-.+.+-.+++++.+.++|++.|.+-.-... ..+..-.+.+
T Consensus 649 N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gl----l~P~~~~~Lv 724 (1143)
T TIGR01235 649 NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGL----LKPAAAKLLI 724 (1143)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCC----cCHHHHHHHH
Confidence 4556666677777664221 12111 122234566889999999999999998664332 2233457888
Q ss_pred HHHHhhCCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehhhhh-CCccccchhhhhhccCccccCCCChHHHHHHHH
Q 026945 73 KAVKNALRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRTAEWIVGSEEISKDGNLDQADLLV 148 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 148 (230)
+.+++.+++||-.-.--++ ......+++ .|||.|=.+=+-|+ ++....-..--..+......+ .--.+.+.-+.
T Consensus 725 ~~lk~~~~~pi~~H~Hdt~Gla~an~laA~e-aGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~t-gidl~~l~~is 802 (1143)
T TIGR01235 725 KALREKTDLPIHFHTHDTSGIAVASMLAAVE-AGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERDP-GLNVAWIRELS 802 (1143)
T ss_pred HHHHHhcCCeEEEEECCCCCcHHHHHHHHHH-hCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCCC-CcCHHHHHHHH
Confidence 9999988999886653332 233344554 79998855543333 343211000001111111111 11123444455
Q ss_pred HHHHHH-hhCCChhHHHHHHH-HHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 149 EYLKLC-EKYPVPWRMIRSHV-HKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 149 ~yl~~~-~~~~~~~~~~r~h~-~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
+|++-. ..|......++..- .-|.|. .|| ...++.++.+.... -++++.+.+.+.......+|+++-.+
T Consensus 803 ~~~~~vr~~y~~~~~~~~~~~~~v~~~~-~PGG~~snl~~q~~~~g~~~~~~~v~~~~~~v~~~lG~~~~VTP~S 876 (1143)
T TIGR01235 803 AYWEAVRNLYAAFESDLKGPASEVYLHE-MPGGQYTNLQFQARSLGLGDRWHEVKQAYREANQMFGDIVKVTPSS 876 (1143)
T ss_pred HHHHHHHHHhhcCCCCCcCCCcCeEEec-CCCcccchHHHHHHHCCcHhhHHHHHHHHHHHHHHcCCCceECChh
Confidence 565533 23321101111110 011222 444 24566677665411 37777777777777778888877666
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.75 Score=40.39 Aligned_cols=73 Identities=19% Similarity=0.080 Sum_probs=54.8
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~ 85 (230)
+++.++. .++.||-+|--...+.+++.-.++.+.+.|...|.+--|... .+|.. ..|...+..+++ .+.|||.
T Consensus 121 dLL~a~~-~tgkpV~lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~t--Fgy~~lv~D~r~ip~mk~-~~lPVI~ 194 (290)
T PLN03033 121 DLLVAAA-KTGKIINIKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMRE-ANCPVVA 194 (290)
T ss_pred HHHHHHH-ccCCeEEeCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--cCCCCcccchhhhHHHHh-cCCCEEE
Confidence 3455554 358999999888888899999999999999998888777542 13322 357788888875 7889985
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.53 Score=39.50 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=61.6
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH-HHHHhhCCccEEEcCCC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI-KAVKNALRIPVLANGNV 89 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i-~~i~~~~~ipvi~nGgI 89 (230)
++.++...+++|.--+++... .+... .... ...+|++-+...+. +..+..-..||+.+ +. .+.|++..|||
T Consensus 92 ~~~l~~~~~~~iik~i~v~~~-~~l~~-~~~~-~~~~d~~L~Ds~~~-~~GGtG~~~dw~~l~~~----~~~p~~LAGGi 163 (210)
T PRK01222 92 CRQLKRRYGLPVIKALRVRSA-GDLEA-AAAY-YGDADGLLLDAYVG-LPGGTGKTFDWSLLPAG----LAKPWILAGGL 163 (210)
T ss_pred HHHHHhhcCCcEEEEEecCCH-HHHHH-HHhh-hccCCEEEEcCCCC-CCCCCCCccchHHhhhc----cCCCEEEECCC
Confidence 445555456677655665422 12111 1111 23588988877654 22222224589887 33 36799999999
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++.+.++++..+..||=+..|.-..|.
T Consensus 164 -~peNv~~ai~~~~p~gvDvsSgvE~~~G 191 (210)
T PRK01222 164 -NPDNVAEAIRQVRPYGVDVSSGVESAPG 191 (210)
T ss_pred -CHHHHHHHHHhcCCCEEEecCceECCCC
Confidence 6999999998778888888777665553
|
|
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.69 Score=41.25 Aligned_cols=90 Identities=16% Similarity=0.187 Sum_probs=57.9
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+.++++++.+ ++.+.+-..-+|+.+. ...++.+++.++.+|. | .. .+-+++..+++++.+++||.+.=
T Consensus 162 ~~v~~vr~~~~~~~l~vDaN~~~~~~~-a~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~~pia~dE 230 (324)
T TIGR01928 162 QLVKLRRLRFPQIPLVIDANESYDLQD-FPRLKELDRYQLLYIE-------E--PF-KIDDLSMLDELAKGTITPICLDE 230 (324)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCHHH-HHHHHHHhhCCCcEEE-------C--CC-ChhHHHHHHHHHhhcCCCEeeCC
Confidence 4455555543 1222222222355444 2456666666665554 1 11 12368889999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
.+.++.++.++++...+|.+.+
T Consensus 231 s~~~~~~~~~~~~~~~~dvi~~ 252 (324)
T TIGR01928 231 SITSLDDARNLIELGNVKVINI 252 (324)
T ss_pred CcCCHHHHHHHHHcCCCCEEEe
Confidence 8999999999998777887754
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.2 Score=42.32 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=54.8
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+++.+.|+..|-|..|.-.. + ..|......+.+.++ +-+++-.||+|++|+...-+ .|+.+|.+|..++..-
T Consensus 200 ~raleiGakvvGvNNRnL~s---F--eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~-~GV~avLVGEslmk~s 273 (289)
T KOG4201|consen 200 QRALEIGAKVVGVNNRNLHS---F--EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQK-AGVKAVLVGESLMKQS 273 (289)
T ss_pred HHHHHhCcEEEeecCCccce---e--eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHH-cCceEEEecHHHHhcc
Confidence 33445588888888876542 2 567787888877664 55677789999999998776 8999999999998743
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.66 Score=38.89 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCceEEEEECCC-CC----hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVSCKIRVF-PN----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g-~~----~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++++++.+++||...++-. ++ .....+.++.+.++|+++|.+-...... . .+....+.++.+++..++|+
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~-p--~~~~~~~~i~~~~~~~~i~v 122 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR-P--DGETLAELVKRIKEYPGQLL 122 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC-C--CCCCHHHHHHHHHhCCCCeE
Confidence 566777777789986443411 00 0113456899999999988876543210 0 00122456666665456777
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+. ++.|.+++..+.+ .|+|.+.++
T Consensus 123 i~--~v~t~ee~~~a~~-~G~d~i~~~ 146 (221)
T PRK01130 123 MA--DCSTLEEGLAAQK-LGFDFIGTT 146 (221)
T ss_pred EE--eCCCHHHHHHHHH-cCCCEEEcC
Confidence 75 6789999987665 899998764
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.23 Score=41.61 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..+++.++.-+ ++|++..||| +++++.+.|+ .|+.+|.+|..+.....
T Consensus 136 ~~yikal~~plp~i~~~ptGGV-~~~N~~~~l~-aGa~~vg~Gs~L~~~~~ 184 (204)
T TIGR01182 136 VKMLKALAGPFPQVRFCPTGGI-NLANVRDYLA-APNVACGGGSWLVPKDL 184 (204)
T ss_pred HHHHHHHhccCCCCcEEecCCC-CHHHHHHHHh-CCCEEEEEChhhcCchh
Confidence 37788887755 5999999999 5799999997 89999999997775443
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.31 Score=42.99 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCc-ccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~-~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~ 113 (230)
+..+-+++.|+|.|.|.-.|.-..+...+. .|++.+++|++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+
T Consensus 162 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~-~Gi~KiNi~T~l 239 (288)
T TIGR00167 162 EAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAIS-LGVVKVNIDTEL 239 (288)
T ss_pred HHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEcChHH
Confidence 344445678999998876665443322234 79999999999999999999987666 56677775 788888777654
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.71 Score=40.88 Aligned_cols=93 Identities=23% Similarity=0.271 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++-=.++++.+++.+ .+||.+-+-. .+..+++++++.+++.|+|.+-+.+-.... .+..--+++.+.|.+++++
T Consensus 56 ~eEr~~v~~~~v~~~~grvpviaG~g~-~~t~eai~lak~a~~~Gad~il~v~PyY~k---~~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVIAGVGS-NSTAEAIELAKHAEKLGADGILVVPPYYNK---PSQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEecCC-CcHHHHHHHHHHHHhcCCCEEEEeCCCCcC---CChHHHHHHHHHHHHhcCC
Confidence 344456677777766 4787776643 346889999999999999999988754321 1112346778888888899
Q ss_pred cEE-Ec-----CCCCCHHHHHHHHH
Q 026945 82 PVL-AN-----GNVRHMEDVQKCLE 100 (230)
Q Consensus 82 pvi-~n-----GgI~s~~da~~~l~ 100 (230)
|++ .| |---+++.+.++-+
T Consensus 132 PvilYN~P~~tg~~l~~e~i~~la~ 156 (299)
T COG0329 132 PVILYNIPSRTGVDLSPETIARLAE 156 (299)
T ss_pred CEEEEeCccccCCCCCHHHHHHHhc
Confidence 875 55 44456777766554
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.32 Score=43.18 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+++.+ ++||+++-+-.+.+++.+.. ++.|+|
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECAT-LTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchh-CCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCC
Confidence 5567888999999999999999887766321 11111223444455544 49988765544556665444 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+--..+..|
T Consensus 106 ~vlv~~P~y~~~ 117 (309)
T cd00952 106 GTMLGRPMWLPL 117 (309)
T ss_pred EEEECCCcCCCC
Confidence 999988766555
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.85 Score=38.93 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHHHHHHhhcCCc--eEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---ecCCCCCcCCCCCcccHHHHHHHHhh---
Q 026945 7 VKSLVEKLALNLNV--PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNA--- 78 (230)
Q Consensus 7 ~~eiv~~v~~~~~~--pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---h~rt~~~~~~~~~~~~~~~i~~i~~~--- 78 (230)
+.++++.+++. ++ -..+-+..+...+....+ +.. +|.|.| .+....|. +. +.-++-|+++++.
T Consensus 105 ~~~~l~~Ik~~-g~~~kaGlalnP~Tp~~~i~~~---l~~--vD~VLiMtV~PGfgGQ~--f~-~~~l~KI~~lr~~~~~ 175 (228)
T PRK08091 105 LALTIEWLAKQ-KTTVLIGLCLCPETPISLLEPY---LDQ--IDLIQILTLDPRTGTKA--PS-DLILDRVIQVENRLGN 175 (228)
T ss_pred HHHHHHHHHHC-CCCceEEEEECCCCCHHHHHHH---Hhh--cCEEEEEEECCCCCCcc--cc-HHHHHHHHHHHHHHHh
Confidence 45666777664 45 344444433232222222 222 666644 44444332 11 2234556655543
Q ss_pred --CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 79 --LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 79 --~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.++.|-+-|||+ .+.+..+.+ .|||.+.+|+++..++.
T Consensus 176 ~~~~~~IeVDGGI~-~~ti~~l~~-aGaD~~V~GSalF~~~d 215 (228)
T PRK08091 176 RRVEKLISIDGSMT-LELASYLKQ-HQIDWVVSGSALFSQGE 215 (228)
T ss_pred cCCCceEEEECCCC-HHHHHHHHH-CCCCEEEEChhhhCCCC
Confidence 246688999995 778887775 89999999998876665
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.26 Score=39.20 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHH----HHHhhCCcEEE
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK----CLEETGCEGVL 108 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~----~l~~~gadgVm 108 (230)
+...+.++.+.+.|++.+.+......... .....++.+..++...++|++++..+.+..+... ...+.|+|+|.
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~ 89 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSSDPEE--AETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE 89 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEECccc--CCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence 46789999999999999998765543221 1122224577777788999999888777666542 55568999999
Q ss_pred Eehhhh
Q 026945 109 SAESLL 114 (230)
Q Consensus 109 igR~~l 114 (230)
+.=+..
T Consensus 90 l~~~~~ 95 (200)
T cd04722 90 IHGAVG 95 (200)
T ss_pred EeccCC
Confidence 976553
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.31 Score=42.28 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.++++|+++|.|-.-... + .-.++.+..+++.+++||...==|-++-++.+... .|||+|.+=-+
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe~~~----F--~Gs~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~-~GADaVLLI~~ 140 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTEPKF----F--GGSLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARA-AGADAVLLIAA 140 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE--SCC----C--HHHHHHHHHHHHHSSS-EEEES---SHHHHHHHHH-TT-SEEEEEGG
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCC----C--CCCHHHHHHHHHHhCCCcccccCCCCHHHHHHHHH-cCCCEeehhHH
Confidence 46889999999999999998753221 2 22579999999999999999888999999999886 89999977554
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+|.+
T Consensus 141 ~L~~ 144 (254)
T PF00218_consen 141 ILSD 144 (254)
T ss_dssp GSGH
T ss_pred hCCH
Confidence 5443
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.89 Score=40.27 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECC----CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRV----FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~----g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++.+. +.++.+=-|. ....+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 131 ~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-----------~~~~ei~~~~~~ 199 (294)
T TIGR02319 131 TEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-----------LDVEEMKRVRDE 199 (294)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC-----------CCHHHHHHHHHh
Confidence 334444455555433 3445555554 235678888899999999999999862 234778999998
Q ss_pred CCccEE---EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVL---ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi---~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+. ..|+-.-.-.+.+ |.+.|+..|..+-.++
T Consensus 200 ~~~P~~~nv~~~~~~p~~s~~e-L~~lG~~~v~~~~~~~ 237 (294)
T TIGR02319 200 IDAPLLANMVEGGKTPWLTTKE-LESIGYNLAIYPLSGW 237 (294)
T ss_pred cCCCeeEEEEecCCCCCCCHHH-HHHcCCcEEEEcHHHH
Confidence 888873 3343211122333 3347999999985444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.08 E-value=2.4 Score=36.24 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH----HHHHhh
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI----KAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i----~~i~~~ 78 (230)
|..+.+|++.+.. ..|||.-+-=.+ +.......+......|+|+|-|---.... + ..-.+.+ +.+++.
T Consensus 39 ~~vi~~i~~~~~~--~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~~~---~--~~a~e~l~~v~~av~~~ 111 (235)
T PF04476_consen 39 PWVIREIVAAVPG--RKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGCKD---Y--DEAIEALEAVVRAVKDF 111 (235)
T ss_pred HHHHHHHHHHcCC--CCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCCCC---H--HHHHHHHHHHHHHHhhh
Confidence 4555555555433 389999874322 22333334555667899999874321100 0 0012333 333332
Q ss_pred C-CccEEEcC--CCC-----CHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 L-RIPVLANG--NVR-----HMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~-~ipvi~nG--gI~-----s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
- +..+++.+ |-. ++-++.+...+.||+++|+=.+.=....+|.-.. .+.+.+|
T Consensus 112 ~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~-------------------~~~L~~F 172 (235)
T PF04476_consen 112 DPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLS-------------------EEELAEF 172 (235)
T ss_pred CCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCC-------------------HHHHHHH
Confidence 2 34566655 432 5667778888899999999775544555555332 2446777
Q ss_pred HHHHhhCCChh----HHHHHHHHHHHhhhcCCCHHHHHHHHhc
Q 026945 151 LKLCEKYPVPW----RMIRSHVHKLLGEWFRIQPGVREDLNAQ 189 (230)
Q Consensus 151 l~~~~~~~~~~----~~~r~h~~~~l~~~~~~~~~~r~~l~~~ 189 (230)
.+.+..+|.-. ..-..|+..+. .+-+..=.+|-.++..
T Consensus 173 v~~ar~~gL~~aLAGSL~~~di~~L~-~l~pD~lGfRGAvC~g 214 (235)
T PF04476_consen 173 VAQARAHGLMCALAGSLRFEDIPRLK-RLGPDILGFRGAVCGG 214 (235)
T ss_pred HHHHHHccchhhccccCChhHHHHHH-hcCCCEEEechhhCCC
Confidence 77777765210 01112332222 1223334567777765
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.72 Score=39.62 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+.+...+++|++.+. .||++-+-.|. +.++..+.++.+.++|++.|.+-+-. -..+.++.+++. .
T Consensus 57 l~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~----------~~~~~i~ai~~a-~ 125 (240)
T cd06556 57 VNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE----------WHIETLQMLTAA-A 125 (240)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH----------HHHHHHHHHHHc-C
Confidence 4567778888888775 79999998764 34688899999999999999996631 112445666554 4
Q ss_pred ccEEEcCCCC---------------CHHHHHH------HHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVR---------------HMEDVQK------CLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~---------------s~~da~~------~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++-=|.. +.+.+++ .+++.|||+|.+= +. ++...+++
T Consensus 126 i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e-~~--~~e~~~~i 186 (240)
T cd06556 126 VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVME-CV--PVELAKQI 186 (240)
T ss_pred CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEc-CC--CHHHHHHH
Confidence 7888665551 1222322 3345899999883 22 44444444
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.74 Score=40.95 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=59.6
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--CCCCCcc---c----HHHHHHHHhhCCccEEE--cC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRA---D----WNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--~~~~~~~---~----~~~i~~i~~~~~ipvi~--nG 87 (230)
+.|+.+-+- |.+.++..+.++.++++|+|.|.+|......+ ..+.|.. + .+.++.+++.+++||.+ .+
T Consensus 62 ~~p~i~ql~-g~~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~ 140 (319)
T TIGR00737 62 ETPISVQLF-GSDPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRI 140 (319)
T ss_pred cceEEEEEe-CCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEc
Confidence 578777764 45678899999999999999999997543211 1112221 2 35566777778889864 23
Q ss_pred CC----CCHHHHHHHHHhhCCcEEEE
Q 026945 88 NV----RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI----~s~~da~~~l~~~gadgVmi 109 (230)
|. .+..++.+.+++.|+|++.+
T Consensus 141 g~~~~~~~~~~~a~~l~~~G~d~i~v 166 (319)
T TIGR00737 141 GWDDAHINAVEAARIAEDAGAQAVTL 166 (319)
T ss_pred ccCCCcchHHHHHHHHHHhCCCEEEE
Confidence 32 23455666677799999966
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.37 Score=41.99 Aligned_cols=86 Identities=20% Similarity=0.299 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-+.+.. ..+..-..+.++.+.+.+ ++||++.=+-.|.+++.+.. ++.|+|
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~-~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESP-TLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchh-hCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 556788999999999999999998776542 121111234555555655 48887543334555555433 358999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+....+..|
T Consensus 98 ~v~~~~P~~~~~ 109 (284)
T cd00950 98 AALVVTPYYNKP 109 (284)
T ss_pred EEEEcccccCCC
Confidence 999998766544
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=1.1 Score=39.01 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=67.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEc-
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++++.+ ++.||-+|--.+-+.+++.-.++.+.+.|...|.+--|-.. .+|.. ..|...+..+++ .++|||.-
T Consensus 115 ~LL~a~g~-t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~t--f~y~r~~~D~~~vp~~k~-~~lPVi~Dp 190 (264)
T PRK05198 115 DLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTS--FGYNNLVVDMRGLPIMRE-TGAPVIFDA 190 (264)
T ss_pred HHHHHHhc-cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCC--cCCCCeeechhhhHHHhh-CCCCEEEeC
Confidence 45666644 58999999887778889999999999999988888777542 13322 357888888877 55999852
Q ss_pred --------------CCCCCH--HHHHHHHHhhCCcEEEEe
Q 026945 87 --------------GNVRHM--EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 --------------GgI~s~--~da~~~l~~~gadgVmig 110 (230)
||-++. .-+...+. .|+||+|+=
T Consensus 191 SHsvq~pg~~~~~s~G~r~~v~~la~AAvA-~GadGl~iE 229 (264)
T PRK05198 191 THSVQLPGGQGGSSGGQREFVPVLARAAVA-VGVAGLFIE 229 (264)
T ss_pred CccccCCCCCCCCCCCcHHHHHHHHHHHHH-cCCCEEEEE
Confidence 333321 22234454 799999993
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.75 Score=41.23 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=24.2
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.++++ .++.|+ .-+.|+..+.++.+ .|||+|++
T Consensus 96 ~~~lk~-~Gi~v~--~~v~s~~~A~~a~~-~GaD~vVa 129 (320)
T cd04743 96 ARALEA-IGISTY--LHVPSPGLLKQFLE-NGARKFIF 129 (320)
T ss_pred HHHHHH-CCCEEE--EEeCCHHHHHHHHH-cCCCEEEE
Confidence 456654 467776 45678888887775 89998753
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.98 Score=39.98 Aligned_cols=96 Identities=18% Similarity=0.199 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++++. +.++.+=-|.. ...+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 132 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------~~~~~i~~~~~~ 200 (292)
T PRK11320 132 QEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------TELEMYRRFADA 200 (292)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHh
Confidence 344455555555543 55666655642 34678888899999999999999872 145888999998
Q ss_pred CCccEEEc---CCC---CCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVLAN---GNV---RHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi~n---GgI---~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+++| |+- .|.++ |.+.|+..|..|-.++
T Consensus 201 ~~~Pl~~n~~~~~~~p~~s~~~----L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 201 VKVPILANITEFGATPLFTTEE----LASAGVAMVLYPLSAF 238 (292)
T ss_pred cCCCEEEEeccCCCCCCCCHHH----HHHcCCcEEEEChHHH
Confidence 99998543 332 34443 3357999999986544
|
|
| >PRK05105 O-succinylbenzoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=1 Score=40.18 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=63.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHH---cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLED---AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~---~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++ .++.+|. | .. .+++..+++++.
T Consensus 140 ~~~~d~~~i~~vr~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~~~~i~~iE-------q--P~---~~~~~~~~l~~~ 207 (322)
T PRK05105 140 EAVRDGMLVNLLLEAIPDLKLRLDANRGWTLEKAQQFAKYVPPDYRHRIAFLE-------E--PC---KTPDDSRAFARA 207 (322)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCccEEE-------C--CC---CCHHHHHHHHHh
Confidence 4556667788887765 23333333346888899999999988 7787776 2 11 234567889899
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.++++. ..+ ..++|+|.+
T Consensus 208 ~~~PIa~DEs~~~~~~~-~~~-~~~~d~i~i 236 (322)
T PRK05105 208 TGIAIAWDESLREPDFQ-FEA-EPGVRAIVI 236 (322)
T ss_pred CCCCEEECCCCCchhhh-hhh-cCCCCEEEE
Confidence 99999998889888643 333 356786643
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.42 Score=41.35 Aligned_cols=84 Identities=17% Similarity=0.324 Sum_probs=57.0
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhhCCccEEEcCCCC
Q 026945 27 RVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNALRIPVLANGNVR 90 (230)
Q Consensus 27 R~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~ 90 (230)
-.| ++.+.+.++++.+.+.|+|.|.+-=-..+- .++.+-.--++.++++++..++|++.=+=.+
T Consensus 9 ~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N 88 (250)
T PLN02591 9 TAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYN 88 (250)
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEeccc
Confidence 344 577889999999999999999984221110 0111111236778888877789977655443
Q ss_pred -----CHHHHHHHHHhhCCcEEEEe
Q 026945 91 -----HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 91 -----s~~da~~~l~~~gadgVmig 110 (230)
..+.+.+.+++.|+|||++-
T Consensus 89 ~i~~~G~~~F~~~~~~aGv~Gviip 113 (250)
T PLN02591 89 PILKRGIDKFMATIKEAGVHGLVVP 113 (250)
T ss_pred HHHHhHHHHHHHHHHHcCCCEEEeC
Confidence 45566667778999999993
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.94 Score=39.93 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++...+-|++++++. +.++.+=-|.. ...+++++=++.+.++|+|.|.+++- .+.+.++++.+.
T Consensus 127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------~~~e~i~~~~~~ 195 (285)
T TIGR02317 127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------TSLEEFRQFAKA 195 (285)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------CCHHHHHHHHHh
Confidence 344445555555543 44566655652 34678888899999999999999872 135778899999
Q ss_pred CCccEEEc---CCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 79 LRIPVLAN---GNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 79 ~~ipvi~n---GgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++.|+++| |+-.-.-++.+ |.+.|+..|..|-.++
T Consensus 196 i~~Pl~~n~~~~~~~p~~s~~e-L~~lGv~~v~~~~~~~ 233 (285)
T TIGR02317 196 VKVPLLANMTEFGKTPLFTADE-LREAGYKMVIYPVTAF 233 (285)
T ss_pred cCCCEEEEeccCCCCCCCCHHH-HHHcCCcEEEEchHHH
Confidence 88998543 33211112333 3357999999985444
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.46 Score=41.80 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHH---HHHhhC
Q 026945 31 NLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQK---CLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~---~l~~~g 103 (230)
|.+...+.++.+.+.| ++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||+++ |+..+ +++.+ ..++.|
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~-Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t-~~~i~la~~a~~~G 96 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFM-LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNL-KEAVELGKYATELG 96 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCccccccc-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCH-HHHHHHHHHHHHhC
Confidence 5567888999999999 999999998776421 11111223444455544 4898765 55544 44443 334589
Q ss_pred CcEEEEehhhhhCCc
Q 026945 104 CEGVLSAESLLENPA 118 (230)
Q Consensus 104 adgVmigR~~l~nP~ 118 (230)
+|+||+.-..+..|.
T Consensus 97 ad~v~v~~P~y~~~~ 111 (290)
T TIGR00683 97 YDCLSAVTPFYYKFS 111 (290)
T ss_pred CCEEEEeCCcCCCCC
Confidence 999999887766654
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.47 Score=41.57 Aligned_cols=86 Identities=16% Similarity=0.150 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHH---HHHhhCC
Q 026945 31 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~---~l~~~ga 104 (230)
|.+....+++.+.+. |++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.=+-.+.+++.+ ..++.|+
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~-~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga 97 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGEGF-LLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY 97 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcCcc-cCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence 556788899999999 999999999776642 121111234455555544 489886433345555543 3345899
Q ss_pred cEEEEehhhhhCC
Q 026945 105 EGVLSAESLLENP 117 (230)
Q Consensus 105 dgVmigR~~l~nP 117 (230)
|+||+.-..+..|
T Consensus 98 d~v~~~~P~y~~~ 110 (288)
T cd00954 98 DAISAITPFYYKF 110 (288)
T ss_pred CEEEEeCCCCCCC
Confidence 9999988776655
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.96 Score=39.80 Aligned_cols=85 Identities=9% Similarity=0.144 Sum_probs=53.5
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEE
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi 84 (230)
+-++.+++... .+|.|=++ + .+-+..+.++|+|.|-+-..+. +.+++..+.+ ..|+.
T Consensus 182 ~ai~~~r~~~~~~~kIeVEv~---t----leea~ea~~~gaDiI~LDn~s~------------e~l~~av~~~~~~~~le 242 (281)
T PRK06106 182 EAIRRARAGVGHLVKIEVEVD---T----LDQLEEALELGVDAVLLDNMTP------------DTLREAVAIVAGRAITE 242 (281)
T ss_pred HHHHHHHHhCCCCCcEEEEeC---C----HHHHHHHHHcCCCEEEeCCCCH------------HHHHHHHHHhCCCceEE
Confidence 44555555432 33444443 2 3334455589999998755432 3333333322 46899
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++||| +++.+.++-+ +|+|.+.+|.-..
T Consensus 243 aSGGI-~~~ni~~yA~-tGVD~Is~Galth 270 (281)
T PRK06106 243 ASGRI-TPETAPAIAA-SGVDLISVGWLTH 270 (281)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeChhhc
Confidence 99999 6888888775 9999999987433
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.38 Score=42.31 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
+.+-++.+++... .+|.|-++ +.+-+..+.++|+|.|-+-..+.++. -+.+..++. ...+.
T Consensus 179 i~~av~~~r~~~~~~~kIeVEv~-------slee~~ea~~~gaDiImLDn~s~e~l--------~~av~~~~~--~~~le 241 (281)
T PRK06543 179 LTEALRHVRAQLGHTTHVEVEVD-------RLDQIEPVLAAGVDTIMLDNFSLDDL--------REGVELVDG--RAIVE 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC-------CHHHHHHHHhcCCCEEEECCCCHHHH--------HHHHHHhCC--CeEEE
Confidence 3445555555442 34555444 23445555689999999755433211 122222222 35789
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||| +.+.+.++-+ +|+|.+.+|.-...-|++
T Consensus 242 aSGgI-~~~ni~~yA~-tGVD~Is~galths~~~~ 274 (281)
T PRK06543 242 ASGNV-NLNTVGAIAS-TGVDVISVGALTHSVRAL 274 (281)
T ss_pred EECCC-CHHHHHHHHh-cCCCEEEeCccccCCccc
Confidence 99999 6888888775 999999998744444443
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.58 Score=40.76 Aligned_cols=88 Identities=17% Similarity=0.269 Sum_probs=59.0
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
+..=+-.| ++.+.+.++++.+.+.|+|.|.+-=-..+- .++..-..-++.++++++..++|++.
T Consensus 17 li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl 96 (263)
T CHL00200 17 LIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI 96 (263)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE
Confidence 33345555 577889999999999999999984221110 01211122367788888777899776
Q ss_pred cCCCC-----CHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVR-----HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~-----s~~da~~~l~~~gadgVmi 109 (230)
=+=.+ ..+...+...+.|+|||.+
T Consensus 97 m~Y~N~i~~~G~e~F~~~~~~aGvdgvii 125 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLII 125 (263)
T ss_pred EecccHHHHhCHHHHHHHHHHcCCeEEEe
Confidence 55443 3466666667799999999
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.43 Score=42.30 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=56.1
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+.++.+++.. ..+|.|=++ +.+-+..+.++|+|.|-+-..+. +.++++.+.. ++.+.+
T Consensus 197 ~av~~~r~~~~~~kIeVEv~-------sleea~ea~~~gaDiI~LDn~s~------------e~~~~av~~~~~~~~iea 257 (296)
T PRK09016 197 QAVEKAFWLHPDVPVEVEVE-------NLDELDQALKAGADIIMLDNFTT------------EQMREAVKRTNGRALLEV 257 (296)
T ss_pred HHHHHHHHhCCCCCEEEEeC-------CHHHHHHHHHcCCCEEEeCCCCh------------HHHHHHHHhhcCCeEEEE
Confidence 4444555433 345666554 23445566689999998755432 3333332222 578999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||| +.+.+.++-+ +|+|.+.+|.-.-.-||
T Consensus 258 SGGI-~~~ni~~yA~-tGVD~Is~galthsa~~ 288 (296)
T PRK09016 258 SGNV-TLETLREFAE-TGVDFISVGALTKHVQA 288 (296)
T ss_pred ECCC-CHHHHHHHHh-cCCCEEEeCccccCCCc
Confidence 9999 6888888765 99999999874333344
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.55 Score=41.48 Aligned_cols=93 Identities=10% Similarity=0.168 Sum_probs=55.4
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEc
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~n 86 (230)
+.++.+++.. ..||.|=++ + .+-+..+.++|+|.|-+-.-+.++. -+.+..++.. -++.+.++
T Consensus 188 ~ai~~~r~~~~~~kIeVEv~---t----l~ea~eal~~gaDiI~LDnm~~e~v--------k~av~~~~~~~~~v~ieaS 252 (289)
T PRK07896 188 AALRAVRAAAPDLPCEVEVD---S----LEQLDEVLAEGAELVLLDNFPVWQT--------QEAVQRRDARAPTVLLESS 252 (289)
T ss_pred HHHHHHHHhCCCCCEEEEcC---C----HHHHHHHHHcCCCEEEeCCCCHHHH--------HHHHHHHhccCCCEEEEEE
Confidence 4445555433 345555443 2 2334445689999999864332210 1222222222 35789999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||| +++.+.++-+ +|+|.+.+|.-...-|+
T Consensus 253 GGI-~~~ni~~yA~-tGvD~Is~galt~sa~~ 282 (289)
T PRK07896 253 GGL-TLDTAAAYAE-TGVDYLAVGALTHSVPV 282 (289)
T ss_pred CCC-CHHHHHHHHh-cCCCEEEeChhhcCCCc
Confidence 999 6888888775 99999999974443344
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.82 Score=38.24 Aligned_cols=90 Identities=19% Similarity=0.264 Sum_probs=58.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----CCC----CCcccHHHHHHHHhhCCccEEE--cC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----DGK----KFRADWNAIKAVKNALRIPVLA--NG 87 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----~~~----~~~~~~~~i~~i~~~~~ipvi~--nG 87 (230)
+.|+.+-+.. .+.++..+.++.+.++|+|.|.+|......+ +|. ......+.++.+++.+++||.+ +.
T Consensus 54 ~~p~~~qi~g-~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 54 ERPLIVQLGG-SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred CCCEEEEEcC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 6888888764 4567888999999999999999996432211 110 0112346677777777777654 44
Q ss_pred CCC---CHHHHHHHHHhhCCcEEEE
Q 026945 88 NVR---HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~---s~~da~~~l~~~gadgVmi 109 (230)
+.. +..++.+.+++.|+|.+.+
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v 157 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTV 157 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEE
Confidence 432 3344455666789999866
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.47 Score=42.01 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+-++.+.++|+|.|-+-..+.++. -+.+..++. ++.+.++||| +++.+.++-+ +|+|.+.+|.-...
T Consensus 215 leea~eA~~aGaDiImLDnmspe~l--------~~av~~~~~--~~~lEaSGGI-t~~ni~~yA~-tGVD~IS~galths 282 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFTLDMM--------REAVRVTAG--RAVLEVSGGV-NFDTVRAFAE-TGVDRISIGALTKD 282 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCCHHHH--------HHHHHhhcC--CeEEEEECCC-CHHHHHHHHh-cCCCEEEeCccccC
Confidence 4445666689999999866543321 122222222 5789999999 6888888775 99999999975555
Q ss_pred CCcc
Q 026945 116 NPAL 119 (230)
Q Consensus 116 nP~l 119 (230)
-||+
T Consensus 283 a~~l 286 (294)
T PRK06978 283 VRAT 286 (294)
T ss_pred Cccc
Confidence 5554
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.47 Score=41.26 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=65.8
Q ss_pred HHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHHHH
Q 026945 13 KLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKAVK 76 (230)
Q Consensus 13 ~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~i~ 76 (230)
.+++.-...+..=+-.| ++.+.+.++++.+.+.|+|.|.+-=-..+-. ++..-.--++.+++++
T Consensus 3 ~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir 82 (259)
T PF00290_consen 3 ELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIR 82 (259)
T ss_dssp HHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred hHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 44444344454555565 5778899999999999999999853221110 1111112256778888
Q ss_pred -hhCCccEEEcCCCCC-----HHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 77 -NALRIPVLANGNVRH-----MEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 77 -~~~~ipvi~nGgI~s-----~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+..++|++.=+=.+. .+...+.+++.|+||++| |++.-
T Consensus 83 ~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIi-------pDLP~ 126 (259)
T PF00290_consen 83 KKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLII-------PDLPP 126 (259)
T ss_dssp HHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEE-------TTSBG
T ss_pred ccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEE-------cCCCh
Confidence 677899988775433 455666667799999999 77654
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.84 Score=41.09 Aligned_cols=80 Identities=20% Similarity=0.308 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe-cCCC---CCcCCCCCcccHHHHHHHHhhCC---ccEEEcCCCCCHHHHHHHHHhhC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVH-GRTR---DEKDGKKFRADWNAIKAVKNALR---IPVLANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh-~rt~---~~~~~~~~~~~~~~i~~i~~~~~---ipvi~nGgI~s~~da~~~l~~~g 103 (230)
+.++..++++.|.++|++.|.+. +... +-.++++...+|+.++++.+.++ +-+.+..|+.+.++++.+.+ .|
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~-~g 100 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYD-AG 100 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHH-CC
Confidence 45788999999999999999994 3221 11123444568999999987653 33345567778999988886 79
Q ss_pred CcEEEEeh
Q 026945 104 CEGVLSAE 111 (230)
Q Consensus 104 adgVmigR 111 (230)
+|.|-++-
T Consensus 101 vd~iri~~ 108 (333)
T TIGR03217 101 ARTVRVAT 108 (333)
T ss_pred CCEEEEEe
Confidence 99998875
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.1 Score=38.48 Aligned_cols=204 Identities=17% Similarity=0.196 Sum_probs=103.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +..|.+-+- .+ .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 120 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~----l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 120 DIRNLEKSIEVAKKH-GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGL----LTPKRAYELVKALKKK 194 (467)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCC----cCHHHHHHHHHHHHHh
Confidence 445555666666543 333432222 22 24567889999999999999998664322 1222346788889998
Q ss_pred CCccEEEcCCCC---CHHHHHHHHHhhCCcEEEE-----ehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 79 LRIPVLANGNVR---HMEDVQKCLEETGCEGVLS-----AESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 79 ~~ipvi~nGgI~---s~~da~~~l~~~gadgVmi-----gR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
+++||-.-+--+ .......+++ .|||.|=. |+++ +||.+-.-+...+ ..|-.. .. -.+.+.-+.+|
T Consensus 195 ~~vpI~~H~Hnt~GlA~AN~laAie-aGad~vD~sv~~~g~ga-gN~atE~lv~~L~--~~g~~t-gi-Dl~~L~~~~~~ 268 (467)
T PRK14041 195 FGVPVEVHSHCTTGLASLAYLAAVE-AGADMFDTAISPFSMGT-SQPPFESMYYAFR--ENGKET-DF-DRKALKFLVEY 268 (467)
T ss_pred cCCceEEEecCCCCcHHHHHHHHHH-hCCCEEEeeccccCCCC-CChhHHHHHHHHH--hcCCCC-Cc-CHHHHHHHHHH
Confidence 889987655322 2334445554 79987643 3332 2555322111100 011110 01 12333344445
Q ss_pred HHHH-hhCCChhHHHHHH-HHHHHhhhcCC--CHHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 151 LKLC-EKYPVPWRMIRSH-VHKLLGEWFRI--QPGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 151 l~~~-~~~~~~~~~~r~h-~~~~l~~~~~~--~~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
++-. ..|..-...++.. ..-|.|. +|| ...++.++.+.... -++++.+-+.+..+....+|+++-.+
T Consensus 269 ~~~vr~~y~~~~~~~~~~~~~v~~~q-~PGG~~snl~~Ql~~~g~~~~~~~v~~e~~~v~~~lG~~~~VTP~S 340 (467)
T PRK14041 269 FTKVREKYSEYDVGMKSPDSRILVSQ-IPGGMYSNLVKQLKEQKMLHKLDKVLEEVPRVRKDLGYPPLVTPTS 340 (467)
T ss_pred HHHHHHHHhhcCCCCCCCCcCeeeCC-CCcchHHHHHHHHHHCCcHhHHHHHHHHHHHHHHHcCCCCcCCChh
Confidence 4432 3331100000000 0011122 444 24566666665411 25566666666777777888877766
|
|
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.54 Score=41.00 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEEC--------------CCCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIR--------------VFPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR--------------~g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~ 67 (230)
+...+.|++++++ ++||.--+- .|.+ .+++++-++.++++|++.|.+-+-
T Consensus 117 ~~~~~~I~al~~a-gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v------------ 183 (264)
T PRK00311 117 EEVAETIKRLVER-GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV------------ 183 (264)
T ss_pred HHHHHHHHHHHHC-CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC------------
Confidence 3455667777654 788852221 2223 236778888999999999997442
Q ss_pred cHHHHHHHHhhCCccEEEcC
Q 026945 68 DWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nG 87 (230)
.-+.+++|.+.+++|+|+-|
T Consensus 184 ~~~~~~~i~~~l~iP~igiG 203 (264)
T PRK00311 184 PAELAKEITEALSIPTIGIG 203 (264)
T ss_pred CHHHHHHHHHhCCCCEEEec
Confidence 12788999999999999765
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=1.1 Score=40.65 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCc-----------CCC---CCcccHHHHHHHHhhC---CccEEEcCCCC-CHHHHH
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGK---KFRADWNAIKAVKNAL---RIPVLANGNVR-HMEDVQ 96 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~---~~~~~~~~i~~i~~~~---~ipvi~nGgI~-s~~da~ 96 (230)
..-.++...+.|+|.|-+---+.... +.| .-...-+.++.+.+.+ ++||+..||=+ +.+++.
T Consensus 219 Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L 298 (348)
T PRK09250 219 TGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLL 298 (348)
T ss_pred HHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHH
Confidence 44556677899999998743211000 001 0111235566667776 79999888866 444454
Q ss_pred H----H---HHhhCCcEEEEehhhhhCC
Q 026945 97 K----C---LEETGCEGVLSAESLLENP 117 (230)
Q Consensus 97 ~----~---l~~~gadgVmigR~~l~nP 117 (230)
+ + ++ .|+.||++||-....|
T Consensus 299 ~~v~~a~~~i~-aGa~Gv~iGRNIfQ~~ 325 (348)
T PRK09250 299 DAVRTAVINKR-AGGMGLIIGRKAFQRP 325 (348)
T ss_pred HHHHHHHHhhh-cCCcchhhchhhhcCC
Confidence 3 4 43 6999999999555444
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.5 Score=39.12 Aligned_cols=67 Identities=19% Similarity=0.211 Sum_probs=45.8
Q ss_pred cCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 45 AGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 45 ~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|+|.|-+-.. +.++- ..+.+.+++..+.+ ..|+.++||| +++.+.++-+ +|+|.+.+|.-...-|+
T Consensus 228 agaDiImLDnm~~~~~~~-----~~~~e~l~~av~~~~~~~~lEaSGGI-t~~ni~~yA~-tGVD~Is~Galthsa~~ 298 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENG-----DVDVSMLKEAVELINGRFETEASGNV-TLDTVHKIGQ-TGVTYISSGALTHSVKA 298 (308)
T ss_pred CCCCEEEeCCCccccccc-----CCCHHHHHHHHHhhCCCceEEEECCC-CHHHHHHHHH-cCCCEEEeCccccCCCc
Confidence 89999998776 22221 12345555554443 3789999999 6888888775 99999999874433344
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.12 Score=44.70 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=36.8
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+++|+..|+| +++++.++++...+||+.+|++.+ +|.-|.++
T Consensus 202 ~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~~I 243 (253)
T PRK14567 202 NIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASL-KAAEFNEI 243 (253)
T ss_pred cceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHHHH
Confidence 5899999999 899999999988899999999887 66666654
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.65 Score=38.64 Aligned_cols=104 Identities=15% Similarity=0.255 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCce--EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-------------c------C------
Q 026945 9 SLVEKLALNLNVP--VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-------------K------D------ 61 (230)
Q Consensus 9 eiv~~v~~~~~~p--vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-------------~------~------ 61 (230)
-+++++++.++.| +.|-+=+ .+..+++..+.++|++.+|+|--.... + +
T Consensus 52 pvV~slR~~~~~~~ffD~HmMV----~~Peq~V~~~a~agas~~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~ 127 (224)
T KOG3111|consen 52 PVVESLRKHTGADPFFDVHMMV----ENPEQWVDQMAKAGASLFTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVED 127 (224)
T ss_pred HHHHHHHhccCCCcceeEEEee----cCHHHHHHHHHhcCcceEEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHH
Confidence 3567777776655 3343332 456788899999999999998521110 0 0
Q ss_pred ------------------CCCCcc----cHHHHHHHHhhCCcc-EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 62 ------------------GKKFRA----DWNAIKAVKNALRIP-VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 62 ------------------~~~~~~----~~~~i~~i~~~~~ip-vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|+.|.- -..-++.+++..+-+ +-.-||+ +++.+.++-+ .||+.+..|.+.++-++
T Consensus 128 ~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv-~~~ti~~~a~-AGAN~iVaGsavf~a~d 205 (224)
T KOG3111|consen 128 LEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV-GPSTIDKAAE-AGANMIVAGSAVFGAAD 205 (224)
T ss_pred HHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc-CcchHHHHHH-cCCCEEEecceeecCCC
Confidence 111110 122345556554444 4489999 5778887775 89999999998766443
|
|
| >PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.59 Score=40.88 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=63.9
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCC-CEE-EEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC----CC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLL-AVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NV 89 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i-~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG----gI 89 (230)
..++.||.+|-......++....++.....|+ +.+ .+|-..+..........|+..+..+++..++||+... +-
T Consensus 128 s~~~~pV~~K~g~~~ai~~~~~Aae~~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~ 207 (270)
T PF00793_consen 128 SGTGKPVGFKNGTFAAIDEWLAAAEKHLFLGINSGNILCERGLRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSR 207 (270)
T ss_dssp HCTSSEEEEEE-TTSHGGGHHHHHHHHHHTTECSSEEEEEEEEEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTT
T ss_pred ccCCCeEEeccCCccCHHHHHHHHhhhhhhcCCCCCeeeeeeeeccccccccchhHHHHHHHHHhcCCCEEECchhhhcc
Confidence 45789999999888777888899999999994 444 3443222211011124577888888888889999653 22
Q ss_pred CC-------HHHHHHHHHhhCCcEEEEeh
Q 026945 90 RH-------MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 90 ~s-------~~da~~~l~~~gadgVmigR 111 (230)
.+ +..+...+. .|+||+|+=.
T Consensus 208 ~~~~~q~~V~~~a~aaia-~GidGlmiEs 235 (270)
T PF00793_consen 208 KDGGRQELVPPLARAAIA-AGIDGLMIES 235 (270)
T ss_dssp CGGGGHCGHHHHHHHHHH-HTESEEEEEE
T ss_pred ccCCchhhHHHHHHHHHh-hcCCEEEEee
Confidence 23 556666665 7999999943
|
Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A .... |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.4 Score=41.91 Aligned_cols=87 Identities=21% Similarity=0.261 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+.+.. ++||+++=+-.|.+++.+.. +..|+|
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~-Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad 98 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYS-LTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGAD 98 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGG-S-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-S
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccccc-CCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCce
Confidence 5567889999999999999999998776432 11111233444555544 58988654444555555433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 99 ~v~v~~P~~~~~s 111 (289)
T PF00701_consen 99 AVLVIPPYYFKPS 111 (289)
T ss_dssp EEEEEESTSSSCC
T ss_pred EEEEeccccccch
Confidence 9999876655543
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.6 Score=40.44 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=57.6
Q ss_pred EEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhh-CCccEE
Q 026945 22 VSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNA-LRIPVL 84 (230)
Q Consensus 22 vsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~-~~ipvi 84 (230)
+..=+-.| ++.+.+.++++.+.+.|+|.|.+---..+- .++.+-.--++.++++++. .++|++
T Consensus 12 li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv 91 (256)
T TIGR00262 12 FIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG 91 (256)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 33344555 577889999999999999999985322110 0121112235678888866 688976
Q ss_pred EcCCCCCH------HHHHHHHHhhCCcEEEEe
Q 026945 85 ANGNVRHM------EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 85 ~nGgI~s~------~da~~~l~~~gadgVmig 110 (230)
.=+ ..++ +...+.+.+.|+|||.+=
T Consensus 92 ~m~-Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 92 LLT-YYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred EEE-eccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 322 3344 666667777999999984
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.4 Score=35.81 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=47.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHh-hCCcEEEEehh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEE-TGCEGVLSAES 112 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~-~gadgVmigR~ 112 (230)
.++.+.+.+...+.|.++.....+. ....+.++.+++..+ +++++.|-..| .+-+.+++. .|+|.|++|.|
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~-----~~~~~l~~~~k~~~p~~~iv~GG~~~t-~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNL-----PEAKRLARAIKERNPNIPIVVGGPHAT-ADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHH-----HHHHHHHHHHHTTCTTSEEEEEESSSG-HHHHHHHHHHHTSEEEEEETT
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcH-----HHHHHHHHHHHhcCCCCEEEEECCchh-cChHHHhccCcCcceecCCCh
Confidence 6778888888999999987432211 223556666666554 66666554434 344556655 89999999986
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.27 Score=43.00 Aligned_cols=91 Identities=22% Similarity=0.347 Sum_probs=60.1
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--C--CccEEE
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--L--RIPVLA 85 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~--~ipvi~ 85 (230)
.++.++. ..|.+.||=+-. ++.+=+..+.++|+|.|-+...+.+ .+++..+. . ++-+-+
T Consensus 177 Av~~aR~--~~~~~~kIEVEv---esle~~~eAl~agaDiImLDNm~~e------------~~~~av~~l~~~~~~~lEa 239 (280)
T COG0157 177 AVRRARA--AAPFTKKIEVEV---ESLEEAEEALEAGADIIMLDNMSPE------------ELKEAVKLLGLAGRALLEA 239 (280)
T ss_pred HHHHHHH--hCCCCceEEEEc---CCHHHHHHHHHcCCCEEEecCCCHH------------HHHHHHHHhccCCceEEEE
Confidence 3444444 356666665532 2344566777899999998664433 33333332 2 466779
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| |++.+.++-+ +|+|.+.+|.--..-|++
T Consensus 240 SGgI-t~~ni~~yA~-tGVD~IS~galths~~~l 271 (280)
T COG0157 240 SGGI-TLENIREYAE-TGVDVISVGALTHSAPAL 271 (280)
T ss_pred eCCC-CHHHHHHHhh-cCCCEEEeCccccCCccc
Confidence 9999 6889888775 999999999766666764
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.64 Score=40.63 Aligned_cols=86 Identities=20% Similarity=0.325 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+.....++.+.+.|++.|.+-|-|.+.. ..+..-..+.++.+.+.+ ++||++.=+-.|.+++.+.. +..|+|
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~-~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 95 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESP-TLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGAD 95 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccc-cCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCC
Confidence 556788899999999999999988776542 111111234445555543 48988654444556654433 357999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 96 ~v~v~pP~y~~~ 107 (285)
T TIGR00674 96 GFLVVTPYYNKP 107 (285)
T ss_pred EEEEcCCcCCCC
Confidence 999987776655
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=93.26 E-value=2.4 Score=38.17 Aligned_cols=90 Identities=21% Similarity=0.277 Sum_probs=60.6
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC---EEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~---~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++.+.+ .+.||.++.-. .+.++....++.+.+.|.. .+.+|+-+... ......|+..|..+++..++||..++
T Consensus 126 L~~~A~-~gkPvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP--~~~~~~nL~~I~~Lk~~f~~pVG~Sd 201 (329)
T TIGR03569 126 LKKIAR-FGKPVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYP--APFEDVNLNAMDTLKEAFDLPVGYSD 201 (329)
T ss_pred HHHHHh-cCCcEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCC--CCcccCCHHHHHHHHHHhCCCEEECC
Confidence 444433 48999999877 4677888888888899975 67778754211 11224689999999999999999875
Q ss_pred CCCCHHHHHHHHHhhCCc
Q 026945 88 NVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 88 gI~s~~da~~~l~~~gad 105 (230)
--....-...+.. .||+
T Consensus 202 Ht~G~~~~~aAva-lGA~ 218 (329)
T TIGR03569 202 HTLGIEAPIAAVA-LGAT 218 (329)
T ss_pred CCccHHHHHHHHH-cCCC
Confidence 3333333333333 5777
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.3 Score=39.10 Aligned_cols=88 Identities=18% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+- . +..+++++++.++++|++.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 62 r~~~~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~~~~a~~~Gadav~~~pP~y~~---~~~~~i~~~f~~va~~~~lpi~ 136 (303)
T PRK03620 62 YSQVVRAAVETTAGRVPVIAGAG-G-GTAQAIEYAQAAERAGADGILLLPPYLTE---APQEGLAAHVEAVCKSTDLGVI 136 (303)
T ss_pred HHHHHHHHHHHhCCCCcEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345566555544 588888774 3 67899999999999999999886643211 1112235677888888899975
Q ss_pred -Ec-CCC-CCHHHHHHHH
Q 026945 85 -AN-GNV-RHMEDVQKCL 99 (230)
Q Consensus 85 -~n-GgI-~s~~da~~~l 99 (230)
.| .++ -+++.+.++.
T Consensus 137 lYn~~g~~l~~~~l~~L~ 154 (303)
T PRK03620 137 VYNRDNAVLTADTLARLA 154 (303)
T ss_pred EEcCCCCCCCHHHHHHHH
Confidence 43 232 3677777666
|
|
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.16 Score=43.54 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=41.1
Q ss_pred cccHHHHHH----HHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 66 RADWNAIKA----VKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 66 ~~~~~~i~~----i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.++.+.+.+ +++.. +++|+..|+| +++.+.++++..++||+.+|++.+ +|.-|.++
T Consensus 170 ~a~~e~i~~~~~~Ir~~~~~~~IlYGGSV-~~~N~~~l~~~~~iDG~LvG~asl-~~~~f~~i 230 (237)
T PRK14565 170 IPSNDAIAEAFEIIRSYDSKSHIIYGGSV-NQENIRDLKSINQLSGVLVGSASL-DVDSFCKI 230 (237)
T ss_pred CCCHHHHHHHHHHHHHhCCCceEEEcCcc-CHhhHHHHhcCCCCCEEEEechhh-cHHHHHHH
Confidence 344455544 34433 5899999999 578888888888999999999988 56656544
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.74 Score=38.52 Aligned_cols=96 Identities=23% Similarity=0.365 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--CC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ 80 (230)
|.+.+.++++... +.|++. -|..+...+..+-.+.+.+.|++.|-=||....- .-..+.++++.+. -+
T Consensus 101 D~~~~~~Li~~a~---~~~~tF-HRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~a------~~g~~~L~~lv~~a~~~ 170 (201)
T PF03932_consen 101 DEEALEELIEAAG---GMPVTF-HRAFDEVPDPEEALEQLIELGFDRVLTSGGAPTA------LEGIENLKELVEQAKGR 170 (201)
T ss_dssp -HHHHHHHHHHHT---TSEEEE--GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSST------TTCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHhcC---CCeEEE-eCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCCH------HHHHHHHHHHHHHcCCC
Confidence 4556666666654 678887 5654333345566777888899998877754321 2245667766544 35
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.|++.|||+ .+.+..+++.+|+.-+=.
T Consensus 171 i~Im~GgGv~-~~nv~~l~~~tg~~~~H~ 198 (201)
T PF03932_consen 171 IEIMPGGGVR-AENVPELVEETGVREIHG 198 (201)
T ss_dssp SEEEEESS---TTTHHHHHHHHT-SEEEE
T ss_pred cEEEecCCCC-HHHHHHHHHhhCCeEEee
Confidence 8899999995 677888888899987754
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.23 Score=44.69 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHH-----------HHHHHhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV-----------QKCLEET 102 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da-----------~~~l~~~ 102 (230)
..+++|.+..+.|+|.++.-..|.-........+-++.+++.++.+-+|+...|||++..|+ -..++ +
T Consensus 270 KPV~Laq~Yyq~GADEv~FLNITsFRdcPl~D~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFR-S 348 (541)
T KOG0623|consen 270 KPVDLAQQYYQDGADEVSFLNITSFRDCPLGDLPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFR-S 348 (541)
T ss_pred ChHHHHHHHHhcCCceeEEEeeccccCCCcccChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHh-c
Confidence 47899999999999999988776532111111223445555555566999999999976664 34555 8
Q ss_pred CCcEEEEehhhhhC
Q 026945 103 GCEGVLSAESLLEN 116 (230)
Q Consensus 103 gadgVmigR~~l~n 116 (230)
|||-|.||.-+..-
T Consensus 349 GADKvSIGsDAVyA 362 (541)
T KOG0623|consen 349 GADKVSIGSDAVYA 362 (541)
T ss_pred CCceeeechhHHHH
Confidence 99999999877654
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.39 Score=39.99 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
....++|++.+-+.+-... |+ ..+++.++.-+ ++|++..|||. ++++.+.++ .|+.+|++|+.+..+.+
T Consensus 115 ~~A~~~G~~~vK~FPA~~~------GG--~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~-ag~~~vg~Gs~L~~~~~ 184 (196)
T PF01081_consen 115 MQALEAGADIVKLFPAGAL------GG--PSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLK-AGAVAVGGGSWLFPKDL 184 (196)
T ss_dssp HHHHHTT-SEEEETTTTTT------TH--HHHHHHHHTTTTT-EEEEBSS---TTTHHHHHT-STTBSEEEESGGGSHHH
T ss_pred HHHHHCCCCEEEEecchhc------Cc--HHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHh-CCCEEEEECchhcCHHH
Confidence 3445789999988663221 21 37888888755 59999999995 689999997 89999999986655443
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.11 Score=44.72 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=34.3
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
++||+..|+|+. +++.++++...+||+.+|++.+ +|.-|.+
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl-~~~~f~~ 239 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASL-KAESFLD 239 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhh-CHHHHHH
Confidence 489999999976 9999999877799999999998 4555543
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.67 Score=41.94 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=43.3
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHH
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~ 100 (230)
.+..+-+++.|+|.|.|.-.|.-..+.. .+ ..+|+.+++|++.+ ++|++.-|+=..+++..+.+.
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~ 244 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIIN 244 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHH
Confidence 3444455678999998765554432211 12 27999999999999 799999998776644333333
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.77 Score=40.12 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=54.3
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH---HhhCCcE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l---~~~gadg 106 (230)
.|.+...++++.+.+.|++.|.+-|-|.+... .+..=..+.++.+.+..+--+.+.|.. +.+++.+.. +..|+|+
T Consensus 17 iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~-Lt~eEr~~l~~~~~~~~~~vi~gvg~~-~~~~ai~~a~~a~~~Gad~ 94 (279)
T cd00953 17 IDKEKFKKHCENLISKGIDYVFVAGTTGLGPS-LSFQEKLELLKAYSDITDKVIFQVGSL-NLEESIELARAAKSFGIYA 94 (279)
T ss_pred cCHHHHHHHHHHHHHcCCcEEEEcccCCCccc-CCHHHHHHHHHHHHHHcCCEEEEeCcC-CHHHHHHHHHHHHHcCCCE
Confidence 36677889999999999999999998776421 111112234444555554223444554 455554433 3589999
Q ss_pred EEEehhhhhC
Q 026945 107 VLSAESLLEN 116 (230)
Q Consensus 107 VmigR~~l~n 116 (230)
||+.-..+..
T Consensus 95 v~v~~P~y~~ 104 (279)
T cd00953 95 IASLPPYYFP 104 (279)
T ss_pred EEEeCCcCCC
Confidence 9998887765
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.53 Score=40.71 Aligned_cols=88 Identities=7% Similarity=0.038 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe---cCCCCCcCCCCCc--ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVH---GRTRDEKDGKKFR--ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh---~rt~~~~~~~~~~--~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
+.+...+.|+.+.++|+.++-=. +||... .+.|. --+.++.++++..++|++. ++.+.+++..+.+ .+|
T Consensus 27 s~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~--sf~G~G~~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~~e--~vd 100 (250)
T PRK13397 27 SYDHIRLAASSAKKLGYNYFRGGAYKPRTSAA--SFQGLGLQGIRYLHEVCQEFGLLSVS--EIMSERQLEEAYD--YLD 100 (250)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccCCCCCCc--ccCCCCHHHHHHHHHHHHHcCCCEEE--eeCCHHHHHHHHh--cCC
Confidence 34678899999999999888543 466542 23332 2366777788889999998 8999999988765 599
Q ss_pred EEEEehhhhhCCccccchh
Q 026945 106 GVLSAESLLENPALFAGFR 124 (230)
Q Consensus 106 gVmigR~~l~nP~lf~~~~ 124 (230)
.+-||...+.|..+...+.
T Consensus 101 ilqIgs~~~~n~~LL~~va 119 (250)
T PRK13397 101 VIQVGARNMQNFEFLKTLS 119 (250)
T ss_pred EEEECcccccCHHHHHHHH
Confidence 9999999999988877654
|
|
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=92.77 E-value=1.2 Score=38.72 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
--.++++.+.+.+ ++||.+-+.. .+..++++.++.++++|++.+.+..-... ..+...-.++.++|.+..++||
T Consensus 54 Er~~l~~~~~~~~~~~~~vi~gv~~-~~~~~~~~~a~~a~~~G~d~v~~~~P~~~---~~~~~~l~~~~~~ia~~~~~pi 129 (284)
T cd00950 54 EHEAVIEAVVEAVNGRVPVIAGTGS-NNTAEAIELTKRAEKAGADAALVVTPYYN---KPSQEGLYAHFKAIAEATDLPV 129 (284)
T ss_pred HHHHHHHHHHHHhCCCCcEEeccCC-ccHHHHHHHHHHHHHcCCCEEEEcccccC---CCCHHHHHHHHHHHHhcCCCCE
Confidence 3345566555554 4777766643 35688999999999999999988764321 1111223567788888888998
Q ss_pred E-E-----cCCCCCHHHHHHHHHhhCCcEE
Q 026945 84 L-A-----NGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 84 i-~-----nGgI~s~~da~~~l~~~gadgV 107 (230)
+ . .|-.-|++.+.++.+...+.|+
T Consensus 130 ~lYn~P~~~g~~ls~~~~~~L~~~p~v~gi 159 (284)
T cd00950 130 ILYNVPGRTGVNIEPETVLRLAEHPNIVGI 159 (284)
T ss_pred EEEEChhHhCCCCCHHHHHHHhcCCCEEEE
Confidence 7 2 4556678888877754334444
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.4 Score=37.70 Aligned_cols=102 Identities=12% Similarity=0.021 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCC---CCc-CCCCCcccHHHHHHHHhhC
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR---DEK-DGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~---~~~-~~~~~~~~~~~i~~i~~~~ 79 (230)
...+-++.+++.. +.||.+-+ .|.+.++..++++.++++| +|+|.+---.. ... .+.....-.+.++.+++.+
T Consensus 78 ~~~~~i~~~~~~~~~~pvI~Si-~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~ 156 (310)
T PRK02506 78 YYLDYVLELQKKGPNKPHFLSV-VGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF 156 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEE-EeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc
Confidence 3334444555443 58888776 5667788999999999998 99998732211 110 0111112245677788888
Q ss_pred CccEE--EcCCCCCHHHHHHHHH---hhCCcEEEE
Q 026945 80 RIPVL--ANGNVRHMEDVQKCLE---ETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi--~nGgI~s~~da~~~l~---~~gadgVmi 109 (230)
++||+ ..-++ +..++.+..+ ..|+++|..
T Consensus 157 ~~Pv~vKlsp~~-~~~~~a~~~~~~~~~g~~~i~~ 190 (310)
T PRK02506 157 TKPLGVKLPPYF-DIVHFDQAAAIFNKFPLAFVNC 190 (310)
T ss_pred CCccEEecCCCC-CHHHHHHHHHHhCcCceEEEEE
Confidence 89987 44555 4455544433 346666543
|
|
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.74 E-value=1.8 Score=39.02 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=57.6
Q ss_pred HHHHHHhhc-CCceEEEEECCCC------ChHHHHHHHHHHHHcCCCEEEEec--CCC-CCcCCCCCcccHHHHHHHHhh
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFP------NLQDTIKYAKMLEDAGCSLLAVHG--RTR-DEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~------~~~~~~~~a~~l~~~G~~~i~vh~--rt~-~~~~~~~~~~~~~~i~~i~~~ 78 (230)
..++.+++. .++||.+-|--.. ..++..+.++.+.+ ++|+|.+.- -.. .......+..-.+.++.+++.
T Consensus 126 ~~~~~l~~~~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~ 204 (344)
T PRK05286 126 ALAERLKKAYRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEA 204 (344)
T ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHH
Confidence 344444332 5788888774211 22445555555543 499998742 111 111111122234677888888
Q ss_pred CC-----ccEE--EcCCCC--CHHHHHHHHHhhCCcEEEEehhh
Q 026945 79 LR-----IPVL--ANGNVR--HMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 79 ~~-----ipvi--~nGgI~--s~~da~~~l~~~gadgVmigR~~ 113 (230)
++ +||+ .+-++. ...++.+.+++.|+|+|.+.-..
T Consensus 205 ~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 205 QAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 76 8987 445554 24555566777899999774433
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.71 E-value=1.5 Score=39.09 Aligned_cols=94 Identities=22% Similarity=0.368 Sum_probs=61.4
Q ss_pred EEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCC----CCCcccHHHHHHHHhhCCccEE--EcCCCCCHHHHH
Q 026945 24 CKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDG----KKFRADWNAIKAVKNALRIPVL--ANGNVRHMEDVQ 96 (230)
Q Consensus 24 vKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~----~~~~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~ 96 (230)
.|.-.++..++..+++..++++| +|++++---......+ +.+..-.+.++.+++..++||+ ..-++.+..++.
T Consensus 100 ~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA 179 (310)
T COG0167 100 GKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIA 179 (310)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHH
Confidence 44455566778999999999999 8999884222211111 0111223445567777789987 445777777888
Q ss_pred HHHHhhCCcEEEEehhhhhCC
Q 026945 97 KCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 97 ~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.+.|+|||.+---....+
T Consensus 180 ~~~~~~g~Dgl~~~NT~~~~~ 200 (310)
T COG0167 180 KAAEEAGADGLIAINTTKSGM 200 (310)
T ss_pred HHHHHcCCcEEEEEeeccccc
Confidence 888889999997765455344
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.70 E-value=1.6 Score=38.35 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=62.9
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+- .+..++++.++.++++|+|.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 61 ~~v~~~~~~~~~g~~pvi~gv~--~~t~~ai~~a~~a~~~Gadav~~~pP~y~~---~s~~~i~~~f~~v~~a~~~pvil 135 (296)
T TIGR03249 61 EQVVEIAVSTAKGKVPVYTGVG--GNTSDAIEIARLAEKAGADGYLLLPPYLIN---GEQEGLYAHVEAVCESTDLGVIV 135 (296)
T ss_pred HHHHHHHHHHhCCCCcEEEecC--ccHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhccCCCEEE
Confidence 44555554443 478888774 357899999999999999999887643211 1112235677888888899975
Q ss_pred Ec--CCCCCHHHHHHHHH-hhCCcEEE
Q 026945 85 AN--GNVRHMEDVQKCLE-ETGCEGVL 108 (230)
Q Consensus 85 ~n--GgI~s~~da~~~l~-~~gadgVm 108 (230)
.| |---+++.+.++.+ ...+.||=
T Consensus 136 Yn~~g~~l~~~~~~~La~~~~nvvgiK 162 (296)
T TIGR03249 136 YQRDNAVLNADTLERLADRCPNLVGFK 162 (296)
T ss_pred EeCCCCCCCHHHHHHHHhhCCCEEEEE
Confidence 44 32347887877765 34445543
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=92.69 E-value=3.1 Score=37.38 Aligned_cols=73 Identities=16% Similarity=0.270 Sum_probs=52.9
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC-CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++++.+ .+.||.+|.-. .+.++....+..+.+.|. +.+.+|+ +..- +......|+..|..+++..++||..++
T Consensus 127 L~~va~-~gkPvilstG~-~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~Y-P~~~~~~nL~~i~~lk~~f~~pVG~SD 200 (327)
T TIGR03586 127 IRYVAK-TGKPIIMSTGI-ATLEEIQEAVEACREAGCKDLVLLKC-TSSY-PAPLEDANLRTIPDLAERFNVPVGLSD 200 (327)
T ss_pred HHHHHh-cCCcEEEECCC-CCHHHHHHHHHHHHHCCCCcEEEEec-CCCC-CCCcccCCHHHHHHHHHHhCCCEEeeC
Confidence 444433 48999999877 477888888888889998 5677786 3321 111224689999999999999997765
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.93 Score=39.70 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=60.3
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.++++|++.+.+..-.... .+...-.++.++|.+.+++||+
T Consensus 57 ~~~~~~~~~~~~~~~~vi~gv~~-~~~~~~i~~a~~a~~~G~d~v~~~pP~~~~---~~~~~i~~~~~~ia~~~~~pv~l 132 (292)
T PRK03170 57 EELIRAVVEAVNGRVPVIAGTGS-NSTAEAIELTKFAEKAGADGALVVTPYYNK---PTQEGLYQHFKAIAEATDLPIIL 132 (292)
T ss_pred HHHHHHHHHHhCCCCcEEeecCC-chHHHHHHHHHHHHHcCCCEEEECCCcCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34455554433 4787765543 356889999999999999999987643211 1112235667778888888976
Q ss_pred E-----cCCCCCHHHHHHHHHhhCCcEE
Q 026945 85 A-----NGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~-----nGgI~s~~da~~~l~~~gadgV 107 (230)
. +|---+++.+.++.+...+-|+
T Consensus 133 Yn~P~~~g~~l~~~~~~~L~~~p~v~gi 160 (292)
T PRK03170 133 YNVPGRTGVDILPETVARLAEHPNIVGI 160 (292)
T ss_pred EECccccCCCCCHHHHHHHHcCCCEEEE
Confidence 2 3545577777776543334444
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.87 Score=40.08 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHH---hhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~---~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+++.+ ++||+++=+- +.+++.+..+ ..|+|
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~GstGE~~~-Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gad 101 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAGGTGEFFS-LTPAEYEQVVEIAVSTAKGKVPVYTGVGG-NTSDAIEIARLAEKAGAD 101 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCcCccc-CCHHHHHHHHHHHHHHhCCCCcEEEecCc-cHHHHHHHHHHHHHhCCC
Confidence 5567888999999999999999887766421 11111123344455544 4888865443 4666654443 48999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+--..+..|
T Consensus 102 av~~~pP~y~~~ 113 (296)
T TIGR03249 102 GYLLLPPYLING 113 (296)
T ss_pred EEEECCCCCCCC
Confidence 999976555443
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=92.58 E-value=2.2 Score=34.88 Aligned_cols=91 Identities=21% Similarity=0.157 Sum_probs=58.6
Q ss_pred HHHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+.++.+++. .++|+.+-.-+. +.. ..+++.+.++|++++++|+.... ...-+.++.+++ .++++++.
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~-~~~--~~~~~~~~~aGad~i~~h~~~~~-------~~~~~~i~~~~~-~g~~~~v~ 109 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTA-DAG--ALEAEMAFKAGADIVTVLGAAPL-------STIKKAVKAAKK-YGKEVQVD 109 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEec-ccc--HHHHHHHHhcCCCEEEEEeeCCH-------HHHHHHHHHHHH-cCCeEEEE
Confidence 3556677664 367776632221 111 24578899999999999985421 111244555554 57777763
Q ss_pred -CCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 87 -GNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -GgI~s~~da~~~l~~~gadgVmig 110 (230)
=+..|++++.+++. .|+|.|.++
T Consensus 110 ~~~~~t~~e~~~~~~-~~~d~v~~~ 133 (202)
T cd04726 110 LIGVEDPEKRAKLLK-LGVDIVILH 133 (202)
T ss_pred EeCCCCHHHHHHHHH-CCCCEEEEc
Confidence 67778999988554 799999884
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.56 Score=40.60 Aligned_cols=102 Identities=19% Similarity=0.228 Sum_probs=71.6
Q ss_pred HHHHHHhhc-CCceEEE--EEC-CCC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 9 SLVEKLALN-LNVPVSC--KIR-VFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsv--KiR-~g~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+.++++.. .+.+|.+ |-. ..+ ...+..++++.+++.|+++|.|-..... +.| +++.++.+++.+.
T Consensus 34 ~f~~AL~~~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~----F~G--s~e~L~~v~~~v~ 107 (254)
T COG0134 34 DFYAALKEASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKY----FQG--SFEDLRAVRAAVD 107 (254)
T ss_pred cHHHHHHhcCCCceEEEEeecCCCCCCcccccCCHHHHHHHHHHhCCeEEEEecCccc----cCC--CHHHHHHHHHhcC
Confidence 456666653 2445544 432 111 1235788999999999999998664332 323 4699999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+||..===|-++-.+.+... .|||+|.+==.+|.+.
T Consensus 108 ~PvL~KDFiiD~yQI~~Ar~-~GADavLLI~~~L~~~ 143 (254)
T COG0134 108 LPVLRKDFIIDPYQIYEARA-AGADAVLLIVAALDDE 143 (254)
T ss_pred CCeeeccCCCCHHHHHHHHH-cCcccHHHHHHhcCHH
Confidence 99988777899999998886 8999996644455443
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.5 Score=38.26 Aligned_cols=90 Identities=21% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.+++.|+|.+.+..-.... .+...-.++.+.|.+.+++||+
T Consensus 54 ~~~~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a~~a~~~Gad~v~v~pP~y~~---~~~~~i~~~~~~i~~~~~~pi~l 129 (285)
T TIGR00674 54 KKVIEFVVDLVNGRVPVIAGTGS-NATEEAISLTKFAEDVGADGFLVVTPYYNK---PTQEGLYQHFKAIAEEVDLPIIL 129 (285)
T ss_pred HHHHHHHHHHhCCCCeEEEeCCC-ccHHHHHHHHHHHHHcCCCEEEEcCCcCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34444444433 4788776532 356789999999999999999987643211 1112235677788888889987
Q ss_pred -----EcCCCCCHHHHHHHHHh
Q 026945 85 -----ANGNVRHMEDVQKCLEE 101 (230)
Q Consensus 85 -----~nGgI~s~~da~~~l~~ 101 (230)
.+|---+++.+.++.+.
T Consensus 130 Yn~P~~tg~~l~~~~l~~L~~~ 151 (285)
T TIGR00674 130 YNVPSRTGVSLYPETVKRLAEE 151 (285)
T ss_pred EECcHHhcCCCCHHHHHHHHcC
Confidence 24545578877777653
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.93 Score=39.69 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHH---HHHhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQK---CLEETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~---~l~~~ga 104 (230)
|.+...+.++.+.+.|++.|.+-|-+.+.. ..+..-..+.++.+.+.+ ++||++. |+- +.+++.+ ..++.|+
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~-~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~-~~~~~i~~a~~a~~~G~ 97 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESP-TLTHEEHEELIRAVVEAVNGRVPVIAGTGSN-STAEAIELTKFAEKAGA 97 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccc-cCCHHHHHHHHHHHHHHhCCCCcEEeecCCc-hHHHHHHHHHHHHHcCC
Confidence 556788899999999999999988776642 121111234455555554 3788754 443 4455543 3345899
Q ss_pred cEEEEehhhhhCC
Q 026945 105 EGVLSAESLLENP 117 (230)
Q Consensus 105 dgVmigR~~l~nP 117 (230)
|+||+.-..+..|
T Consensus 98 d~v~~~pP~~~~~ 110 (292)
T PRK03170 98 DGALVVTPYYNKP 110 (292)
T ss_pred CEEEECCCcCCCC
Confidence 9999987766554
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=92.35 E-value=1 Score=40.91 Aligned_cols=80 Identities=10% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHHHH-HcCCCEEEEecCCCCCcCC-CCCcccHHHHHHH----HhhCCcc------EEEcCCCCC-HHHHHHHH
Q 026945 33 QDTIKYAKMLE-DAGCSLLAVHGRTRDEKDG-KKFRADWNAIKAV----KNALRIP------VLANGNVRH-MEDVQKCL 99 (230)
Q Consensus 33 ~~~~~~a~~l~-~~G~~~i~vh~rt~~~~~~-~~~~~~~~~i~~i----~~~~~ip------vi~nGgI~s-~~da~~~l 99 (230)
+++.+|++... ..|+|.+.|.-.|.-..+. ..+..+++.+++| .+.+++| ++.-|+=.. .+++.+++
T Consensus 198 eeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHGgSGi~~e~i~kai 277 (357)
T TIGR01520 198 EDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFHGGSGSTKQEIKEAL 277 (357)
T ss_pred HHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeCCCCCCHHHHHHHH
Confidence 34555555442 3489999876555543331 2345799999999 4566788 888886544 47788888
Q ss_pred HhhCCcEEEEehhh
Q 026945 100 EETGCEGVLSAESL 113 (230)
Q Consensus 100 ~~~gadgVmigR~~ 113 (230)
+ .|+.-|=|+..+
T Consensus 278 ~-~GI~KINi~Tdl 290 (357)
T TIGR01520 278 S-YGVVKMNIDTDT 290 (357)
T ss_pred H-CCCeEEEeCcHH
Confidence 6 788877776543
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.8 Score=35.58 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec--CCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHG--RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~--rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|...+.+.++.+.+.|+|.|++-- ....+ .. ....+.++++++..+.|+.+.=-+.+.++..+.+...|+|+|.
T Consensus 9 ~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~--~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~ 84 (210)
T TIGR01163 9 DFARLGEEVKAVEEAGADWIHVDVMDGHFVP--NL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIIT 84 (210)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC--Cc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEE
Confidence 456788999999999999999951 11111 11 2457889999887777753211122345555555579999987
Q ss_pred E
Q 026945 109 S 109 (230)
Q Consensus 109 i 109 (230)
+
T Consensus 85 v 85 (210)
T TIGR01163 85 V 85 (210)
T ss_pred E
Confidence 7
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=2.1 Score=37.76 Aligned_cols=85 Identities=9% Similarity=0.111 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-----CC
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LR 80 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ 80 (230)
+.+.++.+++.. ..+|.|-++ +.+-++.+.++|+|.|-+-..+. +.++++.+. .+
T Consensus 176 i~~av~~~r~~~~~~kIeVEv~-------tleqa~ea~~agaDiI~LDn~~~------------e~l~~av~~~~~~~~~ 236 (284)
T PRK06096 176 WSGAINQLRRHAPEKKIVVEAD-------TPKEAIAALRAQPDVLQLDKFSP------------QQATEIAQIAPSLAPH 236 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECC-------CHHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhhccCCC
Confidence 455666666654 234555443 34556666789999999833222 333333222 35
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+.+.++||| +++.+.++-+ +|+|.+.+|--
T Consensus 237 ~~leaSGGI-~~~ni~~yA~-tGvD~Is~gal 266 (284)
T PRK06096 237 CTLSLAGGI-NLNTLKNYAD-CGIRLFITSAP 266 (284)
T ss_pred eEEEEECCC-CHHHHHHHHh-cCCCEEEECcc
Confidence 789999999 6888888775 99999988764
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=2.1 Score=39.52 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE-c
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-N 86 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~-n 86 (230)
++++++++. .+.+|.+-+-+. |..+++ ++.+.++|+++++||+-.... .--..++.+++ .++-+.. .
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK~~-Di~~~v--v~~~a~aGAD~vTVH~ea~~~-------ti~~ai~~akk-~GikvgVD~ 283 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLKTL-DTGNLE--ARMAADATADAVVISGLAPIS-------TIEKAIHEAQK-TGIYSILDM 283 (391)
T ss_pred HHHHHHHHhCCCCeEEEEeccc-ChhhHH--HHHHHhcCCCEEEEeccCCHH-------HHHHHHHHHHH-cCCEEEEEE
Confidence 456666665 356666655542 333333 888899999999999853210 01133444444 4554444 3
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
=+..++.+..+.+ ..++|.|++.++
T Consensus 284 lnp~tp~e~i~~l-~~~vD~Vllht~ 308 (391)
T PRK13307 284 LNVEDPVKLLESL-KVKPDVVELHRG 308 (391)
T ss_pred cCCCCHHHHHHHh-hCCCCEEEEccc
Confidence 3445665555545 368999988864
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=1.8 Score=37.53 Aligned_cols=48 Identities=10% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 69 WNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 69 ~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++-|+++++. .++.|.+-||| +.+.+.++.+ .|+|.+.+|+++..+++
T Consensus 177 l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~-aGad~~V~GSalF~~~d 229 (254)
T PRK14057 177 HERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIA-QGIDRVVSGSALFRDDR 229 (254)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHH-CCCCEEEEChHhhCCCC
Confidence 4455555443 24678899999 5778887775 89999999998765544
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.96 Score=37.86 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++.. .+|.+-+.+++-.......++.+.++|+|++|||+-
T Consensus 40 ~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~ 85 (213)
T TIGR01740 40 KIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGV 85 (213)
T ss_pred HHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4566666543 344333333221122335667778899999999974
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.77 Score=41.58 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCC--CCc---ccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHH
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGK--KFR---ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL 99 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~~---~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l 99 (230)
.+..+-+++.|+|.|.|.-.|.-..+.. .+. .+|+.+++|++.+ ++|++.-|+=..+.++.+.+
T Consensus 176 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~ 245 (347)
T PRK13399 176 DQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEII 245 (347)
T ss_pred HHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHH
Confidence 3444445668999997654443322111 122 7899999999999 79999999877664443333
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=92.12 E-value=8.5 Score=37.40 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=103.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEEC--CC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIR--VF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR--~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
|.+.+...++.+++. +.-+.+-+- .. .+.+...++++.+.++|++.|.+-.-... ..+..-.+.++.+++.
T Consensus 116 d~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~----~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 116 DPRNLQAAIQAAKKH-GAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGI----LTPKAAYELVSALKKR 190 (582)
T ss_pred cHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCC----cCHHHHHHHHHHHHHh
Confidence 445556666666554 333332221 12 25577889999999999999998653322 2223346788889998
Q ss_pred CCccEEEcCCCCC---HHHHHHHHHhhCCcEEEEehh----hhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHH
Q 026945 79 LRIPVLANGNVRH---MEDVQKCLEETGCEGVLSAES----LLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYL 151 (230)
Q Consensus 79 ~~ipvi~nGgI~s---~~da~~~l~~~gadgVmigR~----~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl 151 (230)
+++||-.-+--++ ......+++ .|||.|=.+=+ .-+||.+-.-+...+ ..|... .. -.+.+.-+.+|+
T Consensus 191 ~~~pi~~H~Hnt~Gla~An~laAve-aGa~~vd~ai~GlG~~tGn~~le~vv~~L~--~~g~~t-gi-d~~~L~~l~~~~ 265 (582)
T TIGR01108 191 FGLPVHLHSHATTGMAEMALLKAIE-AGADGIDTAISSMSGGTSHPPTETMVAALR--GTGYDT-GL-DIELLLEIAAYF 265 (582)
T ss_pred CCCceEEEecCCCCcHHHHHHHHHH-hCCCEEEeccccccccccChhHHHHHHHHH--hcCCCc-cc-CHHHHHHHHHHH
Confidence 8888876542222 333345554 79987743322 234555433221111 011110 01 123343344454
Q ss_pred HHH-hhCCChhHHHHHHHHH-HHhhhcCCC--HHHHHHHHhcCcc-CHHHHHHHHHHHHHhCCCCCCccCcc
Q 026945 152 KLC-EKYPVPWRMIRSHVHK-LLGEWFRIQ--PGVREDLNAQNRL-TFEFLYNLVDRLRELGVRIPLYKKDA 218 (230)
Q Consensus 152 ~~~-~~~~~~~~~~r~h~~~-~l~~~~~~~--~~~r~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (230)
+-. ..|..-...++..=.. |.+ -++|- ..+..++.+.... -+.++.+-+.+..+....+|+++-.+
T Consensus 266 ~~v~~~Y~~~~~~~~~~~~~v~~~-e~pGG~~snl~~ql~~~g~~~~~~~vl~e~~~v~~~lG~~~~VTP~S 336 (582)
T TIGR01108 266 REVRKKYSQFEGQLKGPDSRILVA-QVPGGMLSNLESQLKEQNALDKLDEVLEEIPRVREDLGYPPLVTPTS 336 (582)
T ss_pred HHHHHHhhcCCCcccCCCccEEEE-cCCCchHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCCCeECCcc
Confidence 422 3331100000000001 122 25664 5666666665411 14445555555666777788877666
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.67 Score=41.74 Aligned_cols=103 Identities=22% Similarity=0.296 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.++.++-|+.+.+.|+..+.+-.-.+. + ++..+.-.+.++.|++.+++++.+|=|+-+.+.++++-+ .|+|.+---
T Consensus 86 ~eeIle~Ak~ak~~Ga~r~c~~aagr~-~-~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~-aGvd~ynhN- 161 (335)
T COG0502 86 VEEILEAAKKAKAAGATRFCMGAAGRG-P-GRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLAD-AGVDRYNHN- 161 (335)
T ss_pred HHHHHHHHHHHHHcCCceEEEEEeccC-C-CccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHH-cChhheecc-
Confidence 357889999999999655554322221 1 122233357788889899999999988999999988665 899987552
Q ss_pred hhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 112 SLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 112 ~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
+=.+|.+|.++... .+..+|++.+..-
T Consensus 162 -LeTs~~~y~~I~tt-----------~t~edR~~tl~~v 188 (335)
T COG0502 162 -LETSPEFYENIITT-----------RTYEDRLNTLENV 188 (335)
T ss_pred -cccCHHHHcccCCC-----------CCHHHHHHHHHHH
Confidence 22367777776532 3455666655443
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.3 Score=37.72 Aligned_cols=92 Identities=14% Similarity=0.046 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-Cc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 81 (230)
+--.++++.+.+.+ ++||.+-+-. .+..+++++++.+++.|+|.+-+..-... ..+...-.++.+.|.+.+ ++
T Consensus 61 eEr~~v~~~~~~~~~grvpvi~Gv~~-~~t~~ai~~a~~A~~~Gad~vlv~~P~y~---~~~~~~l~~yf~~va~a~~~l 136 (309)
T cd00952 61 EEKQAFVATVVETVAGRVPVFVGATT-LNTRDTIARTRALLDLGADGTMLGRPMWL---PLDVDTAVQFYRDVAEAVPEM 136 (309)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecc-CCHHHHHHHHHHHHHhCCCEEEECCCcCC---CCCHHHHHHHHHHHHHhCCCC
Confidence 33456666665544 4888877643 34588999999999999999998764221 011123467778888888 58
Q ss_pred cEE-E-----cCCCCCHHHHHHHHH
Q 026945 82 PVL-A-----NGNVRHMEDVQKCLE 100 (230)
Q Consensus 82 pvi-~-----nGgI~s~~da~~~l~ 100 (230)
||+ . .|---+++.+.++.+
T Consensus 137 Pv~iYn~P~~tg~~l~~~~l~~L~~ 161 (309)
T cd00952 137 AIAIYANPEAFKFDFPRAAWAELAQ 161 (309)
T ss_pred cEEEEcCchhcCCCCCHHHHHHHhc
Confidence 986 2 232335666666653
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.3 Score=38.58 Aligned_cols=68 Identities=26% Similarity=0.336 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCceEE-------EEECC-------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 7 VKSLVEKLALNLNVPVS-------CKIRV-------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvs-------vKiR~-------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
+.+.++.+.+ .++||. ...|. |.+. ..+++-++.++++|++.|.+-+- + -
T Consensus 118 ~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v----------p--~ 184 (263)
T TIGR00222 118 LVETVQMLTE-RGVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLECV----------P--V 184 (263)
T ss_pred HHHHHHHHHH-CCCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC----------c--H
Confidence 4455666654 377877 22221 2232 35778888999999999997442 2 3
Q ss_pred HHHHHHHhhCCccEEEcC
Q 026945 70 NAIKAVKNALRIPVLANG 87 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nG 87 (230)
+.+++|.+.+++|+|+-|
T Consensus 185 ~~a~~It~~l~iP~iGIG 202 (263)
T TIGR00222 185 ELAAKITEALAIPVIGIG 202 (263)
T ss_pred HHHHHHHHhCCCCEEeec
Confidence 888999999999998765
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=91.96 E-value=3.4 Score=35.34 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cCCCCCcCCCCCc---ccHHHH----HHHH
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKFR---ADWNAI----KAVK 76 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~rt~~~~~~~~~~---~~~~~i----~~i~ 76 (230)
.+.+-+..++ .+.|+.+-+|. .+.++..+.++.+++ +++.|.+. .+.........|. -|.+.+ +.++
T Consensus 56 ~i~~e~~~~~--~~~~vivnv~~-~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~ 131 (231)
T TIGR00736 56 YIIEQIKKAE--SRALVSVNVRF-VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK 131 (231)
T ss_pred HHHHHHHHHh--hcCCEEEEEec-CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH
Confidence 4445555554 25688888885 356888899999876 89999874 4432111111111 144444 4444
Q ss_pred hhCCccEEE--cCCCC--CHHHHHHHHHhhCCcEEEE
Q 026945 77 NALRIPVLA--NGNVR--HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 77 ~~~~ipvi~--nGgI~--s~~da~~~l~~~gadgVmi 109 (230)
..++||.+ -.++. +..++.+.+++.|+|++.+
T Consensus 132 -~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 132 -ELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred -cCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE
Confidence 24688763 23332 3335666777899999977
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.54 Score=38.60 Aligned_cols=75 Identities=28% Similarity=0.372 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCc---CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+=|+..+++|+-++-.--|-...- .+-..-.|...|++|.++++|||++--.|...-.+. .|+..|+|.+==..
T Consensus 24 ~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RIGHfvEAq-iLealgVD~IDESE 101 (208)
T PF01680_consen 24 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVEAQ-ILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEETT-HHHHH-HHHHTT-SEEEEET
T ss_pred HHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeeccccceeehhh-hHHHhCCceecccc
Confidence 4568999999999998877654321 111223578999999999999999999999988885 67778999874433
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.92 E-value=3.3 Score=35.59 Aligned_cols=45 Identities=22% Similarity=0.287 Sum_probs=28.8
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGRT 56 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~rt 56 (230)
+++.+++... +|.+-...+ |..+| ...++.+.+.|+|+++||+-.
T Consensus 54 ~~~el~~~~~-~VflDlK~~-DIpnT~~~~~~~~~~~g~d~vtvH~~~ 99 (240)
T COG0284 54 ILEELKARGK-KVFLDLKLA-DIPNTVALAAKAAADLGADAVTVHAFG 99 (240)
T ss_pred HHHHHHHhCC-ceEEeeecc-cchHHHHHHHHHhhhcCCcEEEEeCcC
Confidence 4555555432 566555443 34444 456777889999999999743
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=2 Score=36.55 Aligned_cols=67 Identities=21% Similarity=0.357 Sum_probs=49.7
Q ss_pred HHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 42 LEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 42 l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..++|++.+-+.+-. . ....+++.++.-+ ++|++..|||.. .+++.+.++ .|+.+|.+|+.+..+.+
T Consensus 128 A~~~Ga~~vKlFPA~------~---~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~-aGa~avg~Gs~L~~~~~ 196 (222)
T PRK07114 128 AEELGCEIVKLFPGS------V---YGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFG-AGVTCVGMGSKLIPKEA 196 (222)
T ss_pred HHHCCCCEEEECccc------c---cCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHh-CCCEEEEEChhhcCccc
Confidence 356777777776521 1 1247788887655 589999999974 589999998 89999999997775554
|
|
| >TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase | Back alignment and domain information |
|---|
Probab=91.74 E-value=4.3 Score=37.65 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=60.1
Q ss_pred CceEEEEECC------CCChHHHHHHHHHHHHcCCCE-EEEecCCCCCcCCCCCcccHHHHHHHHhh-----CCccEEEc
Q 026945 19 NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEKDGKKFRADWNAIKAVKNA-----LRIPVLAN 86 (230)
Q Consensus 19 ~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~-i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-----~~ipvi~n 86 (230)
+..+.+-..- +|+..++.++.+.+++....+ +.+-.-... .....+++..+++++. +++||++.
T Consensus 228 ~~~l~vDaN~~~~~~~~~~~~~ai~~l~~l~~~~~~~~~~iEqPv~~----~d~~~~~e~la~Lr~~~~~~~~~vPI~aD 303 (408)
T TIGR01502 228 APIFHIDVYGTIGEAFGVDIKAMADYIQTLAEAAKPFHLRIEGPMDV----GSRQAQIEAMADLRAELDGRGVDAEIVAD 303 (408)
T ss_pred CCeEEEEcCCCcccccCCCHHHHHHHHHHHHHhCccCCeEEecCCCC----CcchhhHHHHHHHHHHhhcCCCCceEEec
Confidence 3456666653 688889999999998742211 122111000 0001248889999887 58999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmi 109 (230)
=.++|++|+.++++...||.|.+
T Consensus 304 Es~~t~~d~~~~i~~~a~d~v~i 326 (408)
T TIGR01502 304 EWCNTVEDVKFFTDAKAGHMVQI 326 (408)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEe
Confidence 89999999999998778888876
|
This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation. |
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.11 Score=46.75 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------------CC--CCCcCCCCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------------RT--RDEKDGKKFR 66 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------------rt--~~~~~~~~~~ 66 (230)
++|..+.|+..=++..+.+|+.-|+-. +..+..+.++.....|+..|+-.. |. ....+...|+
T Consensus 256 q~p~v~~EvC~Wi~A~~~Ip~~~kmTP--Nitd~revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT~GG 333 (471)
T KOG1799|consen 256 QCPIVDCEVCGWINAKATIPMVSKMTP--NITDKREVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYSTPGG 333 (471)
T ss_pred cChhhhHHHhhhhhhccccccccccCC--CcccccccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccCCCC
Confidence 478899999999988889999999874 344455667777666666654311 10 0111112222
Q ss_pred ccHHHH--------HHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 67 ADWNAI--------KAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 67 ~~~~~i--------~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..+..+ -.|++.+ ..|+.+.|||.|..|+.+++- .|+.-|.+..|.+..
T Consensus 334 ~S~~AvRPIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil-~Gs~~vQVCt~V~~~ 391 (471)
T KOG1799|consen 334 YSYKAVRPIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFIL-LGSNTVQVCTGVMMH 391 (471)
T ss_pred ccccccchHHHHHHHHHHHHhhcCccccccCcccccchhhHhh-cCCcHhhhhhHHHhc
Confidence 233322 2333333 589999999999999999886 788888887776653
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=91.73 E-value=2.9 Score=36.62 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=61.3
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+- . +..+++++++.++++|++.+.+.+-.... .+...-.++.+.|.+.+++||+
T Consensus 56 ~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~pP~y~~---~~~~~i~~~f~~v~~~~~~pi~l 130 (289)
T cd00951 56 AQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLPPYLTE---APQEGLYAHVEAVCKSTDLGVIV 130 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCCCCCC---CCHHHHHHHHHHHHhcCCCCEEE
Confidence 34555554443 589988774 3 67899999999999999999886532211 1111235677788888899976
Q ss_pred Ec--CCCCCHHHHHHHHH-hhCCcEE
Q 026945 85 AN--GNVRHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~n--GgI~s~~da~~~l~-~~gadgV 107 (230)
.| |---+++.+.++.+ ...+-||
T Consensus 131 Yn~~g~~l~~~~l~~L~~~~pnivgi 156 (289)
T cd00951 131 YNRANAVLTADSLARLAERCPNLVGF 156 (289)
T ss_pred EeCCCCCCCHHHHHHHHhcCCCEEEE
Confidence 33 42346777777665 2344444
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.9 Score=38.84 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcC--CCEEEE--ecCCCC-CcCCCCCcccHHHHHHHHhhCC-------ccEE--EcCCCC--CHHHHHHH
Q 026945 35 TIKYAKMLEDAG--CSLLAV--HGRTRD-EKDGKKFRADWNAIKAVKNALR-------IPVL--ANGNVR--HMEDVQKC 98 (230)
Q Consensus 35 ~~~~a~~l~~~G--~~~i~v--h~rt~~-~~~~~~~~~~~~~i~~i~~~~~-------ipvi--~nGgI~--s~~da~~~ 98 (230)
..++++.++.++ +|+|.+ ++.... ......+..-.+.++.+++.++ +||+ ..-++. +..++.+.
T Consensus 153 ~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~ 232 (335)
T TIGR01036 153 KEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADS 232 (335)
T ss_pred HHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHH
Confidence 445555555555 999988 333221 1111111222455666666655 8987 556665 36666676
Q ss_pred HHhhCCcEEEEehhh
Q 026945 99 LEETGCEGVLSAESL 113 (230)
Q Consensus 99 l~~~gadgVmigR~~ 113 (230)
+.+.|+|||.+.--+
T Consensus 233 ~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 233 LVELGIDGVIATNTT 247 (335)
T ss_pred HHHhCCcEEEEECCC
Confidence 667999999775444
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.70 E-value=3.4 Score=36.36 Aligned_cols=103 Identities=13% Similarity=0.090 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhc---CCceEEEEECCCCChHHHHHHHHHHHHc---CCCEEEEecCCCCCcC----CCCCcccHHHHHHH
Q 026945 6 LVKSLVEKLALN---LNVPVSCKIRVFPNLQDTIKYAKMLEDA---GCSLLAVHGRTRDEKD----GKKFRADWNAIKAV 75 (230)
Q Consensus 6 ~~~eiv~~v~~~---~~~pvsvKiR~g~~~~~~~~~a~~l~~~---G~~~i~vh~rt~~~~~----~~~~~~~~~~i~~i 75 (230)
...+.++..++. .+.||.+-+-- . .++..+.++.+++. |+|+|.+----..... +..+..-.+.++.+
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g-~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v 152 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTG-S-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAV 152 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCC-C-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHH
Confidence 334444444433 46888877753 3 68888999988886 6999988432211100 01111223456667
Q ss_pred HhhCCccEE--EcCCC--CCHHHHHHHHHhh--CCcEEEEe
Q 026945 76 KNALRIPVL--ANGNV--RHMEDVQKCLEET--GCEGVLSA 110 (230)
Q Consensus 76 ~~~~~ipvi--~nGgI--~s~~da~~~l~~~--gadgVmig 110 (230)
++.+++||+ ..-+. ....++.+.+... |+|+|.+.
T Consensus 153 ~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 153 KAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEE
Confidence 777789987 33333 2333444445456 89999864
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=91.68 E-value=1.8 Score=37.93 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=58.2
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|++.+.+..-.... .+...-+++.+.|.+.+ ++||+
T Consensus 57 ~~~~~~~~~~~~~~~~viagv~~-~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~---~~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 57 KQIAEIVAEAAKGKVTLIAHVGS-LNLKESQELAKHAEELGYDAISAITPFYYK---FSFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred HHHHHHHHHHhCCCCeEEeccCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHHhcCCCCEE
Confidence 44555554433 4788776643 346789999999999999999886633211 11122357778888888 89987
Q ss_pred -E-----cCCCCCHHHHHHHHH
Q 026945 85 -A-----NGNVRHMEDVQKCLE 100 (230)
Q Consensus 85 -~-----nGgI~s~~da~~~l~ 100 (230)
. .|---+++.+.++.+
T Consensus 133 iYn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 133 IYHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred EEeCccccCCCCCHHHHHHHhc
Confidence 2 344457777777664
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.1 Score=39.01 Aligned_cols=71 Identities=17% Similarity=0.286 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCC--HHHHHHHHH---hhCCcEEEE
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH--MEDVQKCLE---ETGCEGVLS 109 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s--~~da~~~l~---~~gadgVmi 109 (230)
+...++...+.|+|.|-+ .|++ +.+.++++.+.+++||+..||=++ .+++.++.. +.|+.|+.+
T Consensus 168 v~~aaRlaaelGADIiK~---------~ytg--~~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~ 236 (265)
T COG1830 168 VGYAARLAAELGADIIKT---------KYTG--DPESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAV 236 (265)
T ss_pred HHHHHHHHHHhcCCeEee---------cCCC--ChHHHHHHHHhCCCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhh
Confidence 334455667888888863 1322 348889999999999999998765 445544332 269999999
Q ss_pred ehhhhhC
Q 026945 110 AESLLEN 116 (230)
Q Consensus 110 gR~~l~n 116 (230)
||-+...
T Consensus 237 GRNifQ~ 243 (265)
T COG1830 237 GRNIFQH 243 (265)
T ss_pred hhhhhcc
Confidence 9965543
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.6 Score=36.95 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=61.8
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++.+++.|+|.+.+..-.... .+...-+++.+.|.+.+++||+
T Consensus 60 ~~~~~~~~~~~~~~~~viagvg~-~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~---~~~~~l~~~f~~va~a~~lPv~i 135 (293)
T PRK04147 60 KQVLEIVAEEAKGKVKLIAQVGS-VNTAEAQELAKYATELGYDAISAVTPFYYP---FSFEEICDYYREIIDSADNPMIV 135 (293)
T ss_pred HHHHHHHHHHhCCCCCEEecCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCcCCC---CCHHHHHHHHHHHHHhCCCCEEE
Confidence 44555555444 4788776632 356889999999999999999998743211 1112235677888888889976
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+..++-||
T Consensus 136 Yn~P~~tg~~l~~~~l~~L~~~pnvvgi 163 (293)
T PRK04147 136 YNIPALTGVNLSLDQFNELFTLPKVIGV 163 (293)
T ss_pred EeCchhhccCCCHHHHHHHhcCCCEEEE
Confidence 33 444467777766643344444
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.3 Score=39.33 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
-.+-...+.++|++.|.+..- |-+. ....+.|+.||+..+-.=+..|+|-|.+.++.++. .|+||+=+|-
T Consensus 252 dK~rl~ll~~aGvdvviLDSS---qGnS---~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~-aGaDgLrVGM 321 (503)
T KOG2550|consen 252 DKERLDLLVQAGVDVVILDSS---QGNS---IYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIA-AGADGLRVGM 321 (503)
T ss_pred hhHHHHHhhhcCCcEEEEecC---CCcc---hhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHH-ccCceeEecc
Confidence 345567788999999998652 2111 34678999999987644444499999999999997 8999965553
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.5 Score=37.96 Aligned_cols=73 Identities=16% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE------EcCCCCCHHHHH------HHHHh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL------ANGNVRHMEDVQ------KCLEE 101 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi------~nGgI~s~~da~------~~l~~ 101 (230)
+..+=+...++.|++.|.+-..-.. .|. .+.+..++.+++.+++||. +.+=+.|.+++. +.+++
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~--GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~ 84 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKE--GGL--TPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIATVRE 84 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCC--CCc--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_pred hCCcEEEEe
Q 026945 102 TGCEGVLSA 110 (230)
Q Consensus 102 ~gadgVmig 110 (230)
.|+|||.+|
T Consensus 85 ~GadGvV~G 93 (248)
T PRK11572 85 LGFPGLVTG 93 (248)
T ss_pred cCCCEEEEe
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.8 Score=33.67 Aligned_cols=91 Identities=19% Similarity=0.199 Sum_probs=52.5
Q ss_pred HHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.++++.+++.. +.++.+-+.+. +... ..++.+.++|+++|++|.-+.. ....+.+..+++ .+++++..
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~Gad~i~vh~~~~~-------~~~~~~i~~~~~-~g~~~~~~ 108 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTM-DAGE--YEAEQAFAAGADIVTVLGVADD-------ATIKGAVKAAKK-HGKEVQVD 108 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeec-cchH--HHHHHHHHcCCCEEEEeccCCH-------HHHHHHHHHHHH-cCCEEEEE
Confidence 35566666542 33333322221 2121 1478889999999999975321 111244555544 68888754
Q ss_pred -CCCCC-HHHHHHHHHhhCCcEEEEe
Q 026945 87 -GNVRH-MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -GgI~s-~~da~~~l~~~gadgVmig 110 (230)
-+..+ .+++..+.+ .|+|.|.+.
T Consensus 109 ~~~~~t~~~~~~~~~~-~g~d~v~~~ 133 (206)
T TIGR03128 109 LINVKDKVKRAKELKE-LGADYIGVH 133 (206)
T ss_pred ecCCCChHHHHHHHHH-cCCCEEEEc
Confidence 24444 477777765 699988773
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.4 Score=40.01 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=52.8
Q ss_pred HHHHHcCC----CEEEEecCCCCCcCC-CCCcccHHHHHHHHhhC---------CccEEEcCCCCCH-HHHHHHHHhhCC
Q 026945 40 KMLEDAGC----SLLAVHGRTRDEKDG-KKFRADWNAIKAVKNAL---------RIPVLANGNVRHM-EDVQKCLEETGC 104 (230)
Q Consensus 40 ~~l~~~G~----~~i~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~---------~ipvi~nGgI~s~-~da~~~l~~~ga 104 (230)
+-+++.|+ |.|.|.-.|.-..+. ..+..|++.+++|++.+ ++|++.-|+=..+ +++.++.+ .|+
T Consensus 195 ~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~~ai~-~GI 273 (350)
T PRK09197 195 YAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIREAVS-YGV 273 (350)
T ss_pred HHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHHHHHH-CCC
Confidence 33445566 999887776654432 13457999999999998 7999999986655 66777776 788
Q ss_pred cEEEEehhh
Q 026945 105 EGVLSAESL 113 (230)
Q Consensus 105 dgVmigR~~ 113 (230)
.-|=|+..+
T Consensus 274 ~KINi~T~l 282 (350)
T PRK09197 274 VKMNIDTDT 282 (350)
T ss_pred eeEEeCcHH
Confidence 888776644
|
|
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.28 E-value=3.3 Score=37.27 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhcCCceEEE-EECCC---CChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNLNVPVSC-KIRVF---PNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsv-KiR~g---~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
.+.+...+++|+.....|++| -+-.+ .+.+++++.+.++ .++|++.|-+-|.+. ...+.|+.+. .
T Consensus 80 ld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~~---------~~~~~I~~l~-~ 149 (332)
T PLN02424 80 LDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGSP---------SRVTAAKAIV-E 149 (332)
T ss_pred HHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCcH---------HHHHHHHHHH-H
Confidence 355667778888888888887 66655 3567888888877 679999999876431 1236777777 5
Q ss_pred CCccEE-----------EcCCC----CCHHHHHH------HHHhhCCcEEEE
Q 026945 79 LRIPVL-----------ANGNV----RHMEDVQK------CLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi-----------~nGgI----~s~~da~~------~l~~~gadgVmi 109 (230)
.+|||+ .-||. ++.+.+.+ .+++.||+++.+
T Consensus 150 ~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivL 201 (332)
T PLN02424 150 AGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVL 201 (332)
T ss_pred cCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 689999 33552 23443332 345689998876
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.8 Score=36.69 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+|......+++..+..|++++.| .+|-+.++.+++..++||+.++ | .++.+..+.+ .|||.|-|
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDI-------------Aadp~LV~~~~~~s~lPICVSa-V-ep~~f~~aV~-AGAdliEI 87 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDI-------------AADPELVKLAKSLSNLPICVSA-V-EPELFVAAVK-AGADLIEI 87 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEe-------------cCCHHHHHHHHHhCCCCeEeec-C-CHHHHHHHHH-hCCCEEEe
Confidence 45667888999999999999986 3466899999999999999865 3 5888888886 89999999
Q ss_pred eh
Q 026945 110 AE 111 (230)
Q Consensus 110 gR 111 (230)
|-
T Consensus 88 GN 89 (242)
T PF04481_consen 88 GN 89 (242)
T ss_pred cc
Confidence 74
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.93 Score=40.89 Aligned_cols=78 Identities=18% Similarity=0.308 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..++|+.+++.|+++|.|-.-... +.| +++.+.++++. +++||..-==|-++-.+.+... .|||+|.+==
T Consensus 139 ~dp~~iA~~Ye~~GA~aISVLTd~~~----F~G--s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~-~GADAVLLIa 211 (338)
T PLN02460 139 FDPVEIAQAYEKGGAACLSVLTDEKY----FQG--SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARS-KGADAILLIA 211 (338)
T ss_pred CCHHHHHHHHHhCCCcEEEEecCcCc----CCC--CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHH-cCCCcHHHHH
Confidence 36889999999999999998652211 222 57899999998 9999999877899999998886 8999997655
Q ss_pred hhhhCC
Q 026945 112 SLLENP 117 (230)
Q Consensus 112 ~~l~nP 117 (230)
++|.+.
T Consensus 212 aiL~~~ 217 (338)
T PLN02460 212 AVLPDL 217 (338)
T ss_pred HhCCHH
Confidence 555543
|
|
| >PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5 | Back alignment and domain information |
|---|
Probab=91.19 E-value=2.2 Score=28.74 Aligned_cols=63 Identities=16% Similarity=0.305 Sum_probs=47.3
Q ss_pred HHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 11 VEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 11 v~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
|+++++.+ ++++.+-..-+|+.+++..+++.+++ +.+|. +- . ++-+++..+++++.+++||.+
T Consensus 2 i~avr~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~--~~~iE-------eP--~-~~~d~~~~~~l~~~~~~pia~ 66 (67)
T PF01188_consen 2 IRAVREAVGPDIDLMVDANQAWTLEEAIRLARALED--YEWIE-------EP--L-PPDDLDGLAELRQQTSVPIAA 66 (67)
T ss_dssp HHHHHHHHSTTSEEEEE-TTBBSHHHHHHHHHHHGG--GSEEE-------SS--S-STTSHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHcCh--hheee-------cC--C-CCCCHHHHHHHHHhCCCCEEe
Confidence 56676664 57888888888999999999999988 34443 21 1 234789999999999999976
|
1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C .... |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.8 Score=41.47 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCC--CC---cccHHHHHHHHhhC-CccEEEcCCCCCHHHHH
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGK--KF---RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQ 96 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~--~~---~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~ 96 (230)
..+..+-+++.|+|.|.|.-.|.-..+.. .+ ..||+.+++|++.+ ++|++.-|+=..++|..
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~ 242 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELL 242 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHH
Confidence 44555556778999997654443322111 12 27999999999999 79999999876654443
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.14 Score=42.48 Aligned_cols=92 Identities=20% Similarity=0.338 Sum_probs=59.4
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEcCCCCCHHHHH
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLANGNVRHMEDVQ 96 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~nGgI~s~~da~ 96 (230)
++|+.-.+++..+.. ....+.... ++++-+.++.. +.....||+.+..+.+. .+.|++..||+ +++.+.
T Consensus 92 ~~~vi~~~~v~~~~~----~~~~~~~~~~~d~~LlD~~~G----gtG~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~ 162 (197)
T PF00697_consen 92 GLPVIKAIHVDKDID----LLDYLERYESVDYFLLDSGSG----GTGKTFDWSLLKKIVESYSPKPVILAGGL-NPENVR 162 (197)
T ss_dssp TSEEEEEEEESSCHS----CCHHCHCSTT-SEEEEESSST----SSSS---GGGGCCCHHT-GTSTEEEESS---TTTHH
T ss_pred CceEEEEEEeCCccc----hHHHHHhcccccEEeEccCCC----cCCcccCHHHhhhhhhhcccCcEEEEcCC-ChHHHH
Confidence 578877777765433 222222222 38888884322 22225799999988774 48999999999 688999
Q ss_pred HHHHhhCCcEEEEehhhhhCCcc
Q 026945 97 KCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 97 ~~l~~~gadgVmigR~~l~nP~l 119 (230)
++++..++.||=+..|.-.+|-.
T Consensus 163 ~ai~~~~p~gvDvsSGvE~~pG~ 185 (197)
T PF00697_consen 163 EAIRQVRPYGVDVSSGVETSPGV 185 (197)
T ss_dssp HHHHHC--SEEEESGGGEEETTE
T ss_pred HHHHhcCceEEEeCCccccCCCC
Confidence 99988899999999988777765
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.4 Score=37.37 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=62.6
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.++++.+.+.+ ++||.+-+-. .+..++++.++..++.|+|.+.+..-.... .+...-.++.+.|.+++ ++||+
T Consensus 56 ~~l~~~~~~~~~g~~pvi~gv~~-~~t~~ai~~a~~A~~~Gad~v~v~pP~y~~---~~~~~l~~~f~~ia~a~~~lpv~ 131 (294)
T TIGR02313 56 KQAIENAIDQIAGRIPFAPGTGA-LNHDETLELTKFAEEAGADAAMVIVPYYNK---PNQEALYDHFAEVADAVPDFPII 131 (294)
T ss_pred HHHHHHHHHHhCCCCcEEEECCc-chHHHHHHHHHHHHHcCCCEEEEcCccCCC---CCHHHHHHHHHHHHHhccCCCEE
Confidence 34455444433 4788766543 356789999999999999999998743221 11122356778888888 79976
Q ss_pred -E-----cCCCCCHHHHHHHHH-hhCCcEEEEe
Q 026945 85 -A-----NGNVRHMEDVQKCLE-ETGCEGVLSA 110 (230)
Q Consensus 85 -~-----nGgI~s~~da~~~l~-~~gadgVmig 110 (230)
. .|---+++.+.++.+ ...+-||=-+
T Consensus 132 iYn~P~~tg~~l~~~~l~~L~~~~pnv~giK~s 164 (294)
T TIGR02313 132 IYNIPGRAAQEIAPKTMARLRKDCPNIVGAKES 164 (294)
T ss_pred EEeCchhcCcCCCHHHHHHHHhhCCCEEEEEeC
Confidence 3 344456777777664 2445554443
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.2 Score=38.15 Aligned_cols=98 Identities=18% Similarity=0.228 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL---NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
++...+=|++++++. ++=|..++-.. ...+++++=++.+.++|+|.|.+++.. +-+.++++.
T Consensus 119 ~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------~~~~i~~~~ 187 (238)
T PF13714_consen 119 PEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------SEEEIERIV 187 (238)
T ss_dssp HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------CHHHHHHHH
Confidence 344444455554432 44444444321 134678888888999999999998852 235688888
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+.++.|+..+.+ ...-++.++- +.|+..|..|-.++
T Consensus 188 ~~~~~Pl~v~~~-~~~~~~~eL~-~lGv~~v~~~~~~~ 223 (238)
T PF13714_consen 188 KAVDGPLNVNPG-PGTLSAEELA-ELGVKRVSYGNSLL 223 (238)
T ss_dssp HHHSSEEEEETT-SSSS-HHHHH-HTTESEEEETSHHH
T ss_pred HhcCCCEEEEcC-CCCCCHHHHH-HCCCcEEEEcHHHH
Confidence 888999877653 2113444433 58999998875443
|
... |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.96 E-value=2.8 Score=36.91 Aligned_cols=94 Identities=21% Similarity=0.233 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC---C-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF---P-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g---~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+++...+-|++++++. +.++.+--|.. . ..+++++=++.+.++|+|.|..++.+ +.+.++++.+
T Consensus 131 ~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------~~e~i~~f~~ 199 (289)
T COG2513 131 SIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------DLEEIRAFAE 199 (289)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------CHHHHHHHHH
Confidence 3455566666666654 55666655652 1 25788889999999999999987753 3588999999
Q ss_pred hCCccEEEc----CC--CCCHHHHHHHHHhhCCcEEEEeh
Q 026945 78 ALRIPVLAN----GN--VRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 78 ~~~ipvi~n----Gg--I~s~~da~~~l~~~gadgVmigR 111 (230)
.+++|+.+| |. ..|. +-|++.|+..|..|-
T Consensus 200 av~~pl~~N~t~~g~tp~~~~----~~L~~~Gv~~V~~~~ 235 (289)
T COG2513 200 AVPVPLPANITEFGKTPLLTV----AELAELGVKRVSYGL 235 (289)
T ss_pred hcCCCeeeEeeccCCCCCcCH----HHHHhcCceEEEECc
Confidence 998777666 33 3444 334568999998873
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.8 Score=37.75 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE-ecCCC---CCcCCCCCcccHHHHHHHHhhCC-ccE--EEcCCCCCHHHHHHHHHhhC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAV-HGRTR---DEKDGKKFRADWNAIKAVKNALR-IPV--LANGNVRHMEDVQKCLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~v-h~rt~---~~~~~~~~~~~~~~i~~i~~~~~-ipv--i~nGgI~s~~da~~~l~~~g 103 (230)
+.++..++++.|.++|++.|.| |+... +-.+++....+|+.++.+++..+ ..+ +..-++.+.+++..+.+ +|
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~-~g 101 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYD-AG 101 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHH-cC
Confidence 4578899999999999999999 43321 11123333457999999976543 333 34445667899988886 89
Q ss_pred CcEEEEeh
Q 026945 104 CEGVLSAE 111 (230)
Q Consensus 104 adgVmigR 111 (230)
+|.|-++-
T Consensus 102 vd~iri~~ 109 (337)
T PRK08195 102 VRVVRVAT 109 (337)
T ss_pred CCEEEEEE
Confidence 99988763
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=90.77 E-value=3.2 Score=41.07 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.+++.|+++|.|..-... +. -+++.+..+++.+++||+.-==|-++-++.+... .|||+|.+==+
T Consensus 70 ~d~~~~a~~y~~~GA~aiSVlTe~~~----F~--Gs~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~-~GADavLLI~~ 142 (695)
T PRK13802 70 PDPAALAREYEQGGASAISVLTEGRR----FL--GSLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARA-HGADLVLLIVA 142 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEEecCcCc----CC--CCHHHHHHHHHhCCCCEEeccccCCHHHHHHHHH-cCCCEeehhHh
Confidence 36889999999999999999753221 22 2578999999999999998777899999998886 89999976666
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+|.+
T Consensus 143 ~L~~ 146 (695)
T PRK13802 143 ALDD 146 (695)
T ss_pred hcCH
Confidence 6653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 230 | ||||
| 1vhn_A | 318 | Crystal Structure Of A Putative Flavin Oxidoreducta | 4e-07 |
| >pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-28
Identities = 43/214 (20%), Positives = 87/214 (40%), Gaps = 23/214 (10%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+ +L + +V +L +++ S K R+ + + ++L + G + +H RT
Sbjct: 108 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--V 165
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
RA+W A+ ++ RIP +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 166 QSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 223
Query: 121 ----AGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEW- 175
R+ ++ S E +LL++ E+ V +R +
Sbjct: 224 KQIKDFLRSGKYSEPSREEILRTFERHLELLIKT--KGERKAV--VEMRKFLA-----GY 274
Query: 176 FRIQPG---VREDLNAQNRLTFEFLYNLVDRLRE 206
+ G RE + + L + +
Sbjct: 275 TKDLKGARRFREKVMKIE--EVQILKEMFYNFIK 306
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 5e-06
Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 34 DTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRH 91
T++ AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVIT 186
Query: 92 MEDVQKCLEETGCEGV 107
+ ++ + + G
Sbjct: 187 PDMYKRVM-DLGVHCS 201
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Length = 244 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 8e-06
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
D + L GC+ V T KDG + +K V A PV+A+G V ++
Sbjct: 147 DLYETLDRLNKEGCARYVV---TDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLD 203
Query: 94 DVQKC--LEETGCEGVLSAESLLEN 116
D++ L G EG + ++L
Sbjct: 204 DLRAIAGLVPAGVEGAIVGKALYAK 228
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* Length = 244 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
D + L+ GCS V T KDG + + + V + PV+A+G V ++
Sbjct: 150 DLWDVLERLDSEGCSRFVV---TDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLD 206
Query: 94 DVQKC--LEETGCEGVLSAESLLEN 116
D++ L G EG + ++L
Sbjct: 207 DLRAIATLTHRGVEGAIVGKALYAR 231
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A Length = 241 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 92
D + K L++ G + T EKDG D++ K + + VLA G +
Sbjct: 144 IDPVSLLKRLKEYGLEEIVH---TEIEKDGTLQEHDFSLTKKIAIEAEVKVLAAGGISSE 200
Query: 93 EDVQK-----CLEETGCEGVLSAESLLEN 116
++ +GV+ + LE
Sbjct: 201 NSLKTAQKVHTETNGLLKGVIVGRAFLEG 229
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 12/93 (12%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKD---GKKFRADWNA--IKAVKNALRIPVLAN 86
+T++ A+ +E AG +++ + + + + +K + +P++
Sbjct: 227 FAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTT 286
Query: 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ + L + V A L + L
Sbjct: 287 NRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* Length = 297 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 5e-04
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 35 TIKYAKMLEDAG-CSLLAVHGRTRD-EKDGKKFR-ADWNAIKAVKNALRIPVLANGNVRH 91
T + A + E+AG +++A+ D G R +D IK + A+ IPV+A + H
Sbjct: 30 TPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGH 89
Query: 92 MEDVQKCLEETGCEGVLSAESL 113
+ LE G + + +E L
Sbjct: 90 FVEAM-ILEAIGVDFIDESEVL 110
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* Length = 340 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 8e-04
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 31 NLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKD-GKKFRADWNAIKAVKNALRIPVLANG 87
+D + YAK +++ G L+ V + ++ + A + ++ IP A G
Sbjct: 227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPF-A-ELIRREADIPTGAVG 284
Query: 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
+ ++ L+ + V LL NP
Sbjct: 285 LITSGWQAEEILQNGRADLVFLGRELLRNPYW 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 100.0 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 100.0 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.84 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 99.83 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 99.83 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.82 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 99.82 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.81 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.81 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.8 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 99.79 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 99.78 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 99.78 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.78 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.77 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 99.77 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 99.77 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 99.76 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 99.76 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 99.76 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 99.75 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.73 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 99.72 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 99.71 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.7 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 99.7 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.69 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.68 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.66 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.64 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.61 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 99.59 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.58 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.56 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.55 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.54 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.54 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.5 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.48 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.47 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.47 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.47 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.45 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.45 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.44 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.43 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 99.43 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 99.43 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 99.4 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 99.4 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.39 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 99.39 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.35 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.29 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.27 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.26 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.25 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.25 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.24 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.21 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.19 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.16 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 99.16 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.14 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.13 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.12 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.09 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.07 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.07 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.06 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.05 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.05 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.0 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.98 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 98.98 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 98.96 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.96 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 98.96 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.95 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 98.94 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 98.94 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 98.92 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 98.92 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 98.91 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 98.87 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 98.85 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 98.84 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.79 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.79 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.77 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.76 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 98.75 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 98.74 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 98.73 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 98.69 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 98.68 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.67 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.63 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 98.61 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 98.59 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 98.59 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 98.58 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.56 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 98.55 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 98.55 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.52 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 98.52 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 98.51 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.5 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 98.5 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 98.49 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.48 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 98.48 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 98.46 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 98.46 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 98.46 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 98.42 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 98.42 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 98.41 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.41 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 98.41 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 98.4 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 98.39 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 98.33 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 98.32 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 98.3 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 98.3 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 98.29 | |
| 3go2_A | 409 | Putative L-alanine-DL-glutamate epimerase; structu | 98.28 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 98.27 | |
| 3mqt_A | 394 | Mandelate racemase/muconate lactonizing protein; P | 98.27 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 98.27 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 98.27 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 98.27 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 98.26 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.26 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 98.25 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 98.25 | |
| 3sbf_A | 401 | Mandelate racemase / muconate lactonizing enzyme; | 98.24 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 98.24 | |
| 3rr1_A | 405 | GALD, putative D-galactonate dehydratase; enolase, | 98.24 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 98.24 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 98.23 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 98.23 | |
| 3mkc_A | 394 | Racemase; metabolic process, PSI2, NYSGXRC, struct | 98.22 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 98.22 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 98.22 | |
| 3rcy_A | 433 | Mandelate racemase/muconate lactonizing enzyme-LI | 98.21 | |
| 4e5t_A | 404 | Mandelate racemase / muconate lactonizing enzyme, | 98.21 | |
| 1chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Ralstonia eu | 98.2 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 98.2 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 98.19 | |
| 3r4e_A | 418 | Mandelate racemase/muconate lactonizing enzyme; en | 98.19 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 98.19 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 98.18 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 98.16 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.14 | |
| 3v3w_A | 424 | Starvation sensing protein RSPA; enolase, enzyme f | 98.14 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 98.13 | |
| 4e4u_A | 412 | Mandalate racemase/muconate lactonizing enzyme; ma | 98.12 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 98.11 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 98.11 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 98.11 | |
| 3my9_A | 377 | Muconate cycloisomerase; structural genomics, PSI- | 98.1 | |
| 3ugv_A | 390 | Enolase; enzyme function initiative, EFI, lyase; 2 | 98.09 | |
| 3q45_A | 368 | Mandelate racemase/muconate lactonizing enzyme FA | 98.09 | |
| 3t6c_A | 440 | RSPA, putative MAND family dehydratase; enolase, m | 98.09 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 98.09 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.09 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 98.07 | |
| 3vcn_A | 425 | Mannonate dehydratase; enolase, magnesium binding | 98.06 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 98.05 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.05 | |
| 3tcs_A | 388 | Racemase, putative; PSI-biology, nysgrc, structura | 98.04 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.03 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 98.01 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 98.01 | |
| 3i6e_A | 385 | Muconate cycloisomerase I; structural genomics, NY | 98.01 | |
| 4e4f_A | 426 | Mannonate dehydratase; magnesium binding, enzyme f | 98.0 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 98.0 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 97.98 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 97.98 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 97.97 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.96 | |
| 3dgb_A | 382 | Muconate cycloisomerase; muconate lactonizing enzy | 97.94 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 97.93 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 97.91 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.9 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 97.9 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 97.9 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 97.9 | |
| 3fcp_A | 381 | L-Ala-D/L-Glu epimerase, A muconate lactonizing en | 97.9 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 97.9 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 97.9 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.89 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 97.89 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.89 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.89 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 97.88 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 97.88 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 97.88 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 97.88 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 97.87 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 97.87 | |
| 3gd6_A | 391 | Muconate cycloisomerase; structural genomics, NYSG | 97.84 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 97.84 | |
| 3mwc_A | 400 | Mandelate racemase/muconate lactonizing protein; e | 97.8 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 97.79 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 97.79 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 97.79 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 97.75 | |
| 3fv9_G | 386 | Mandelate racemase/muconate lactonizing enzyme; st | 97.73 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 97.72 | |
| 4dye_A | 398 | Isomerase; enolase family protein, EFI, enzym func | 97.72 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 97.69 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 97.67 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 97.66 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 97.64 | |
| 4e8g_A | 391 | Enolase, mandelate racemase/muconate lactonizing e | 97.64 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 97.63 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.61 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 97.59 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 97.5 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.49 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 97.48 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.47 | |
| 3ik4_A | 365 | Mandelate racemase/muconate lactonizing protein; s | 97.37 | |
| 4hnl_A | 421 | Mandelate racemase/muconate lactonizing enzyme; de | 97.35 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 97.34 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.34 | |
| 4a35_A | 441 | Mitochondrial enolase superfamily member 1; isomer | 97.31 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 97.27 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 97.27 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 97.22 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.17 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.17 | |
| 4hpn_A | 378 | Putative uncharacterized protein; enolase, enzyme | 97.16 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 97.15 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 97.14 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 97.12 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 97.12 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 97.12 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 97.1 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 97.09 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 97.08 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.05 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.04 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 97.03 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 97.03 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 97.02 | |
| 4h83_A | 388 | Mandelate racemase/muconate lactonizing enzyme; st | 97.0 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 96.99 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.99 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.97 | |
| 2chr_A | 370 | Chloromuconate cycloisomerase; 3.00A {Cupriavidus | 96.96 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.95 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.95 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.88 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 96.83 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.82 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 96.81 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.8 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 96.8 | |
| 4h1z_A | 412 | Enolase Q92ZS5; dehydratase, magnesium binding sit | 96.78 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 96.77 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 96.76 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 96.75 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 96.74 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 96.71 | |
| 1wuf_A | 393 | Hypothetical protein LIN2664; structural genomics, | 96.7 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 96.69 | |
| 2pge_A | 377 | MENC; OSBS, NYSGXRC, PSI-II, structural genomics, | 96.67 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 96.67 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 96.66 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 96.65 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 96.64 | |
| 3va8_A | 445 | Probable dehydratase; enolase, magnesium binding s | 96.64 | |
| 3vdg_A | 445 | Probable glucarate dehydratase; enolase, magnesium | 96.64 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 96.63 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 96.62 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 96.61 | |
| 2ozt_A | 332 | TLR1174 protein; structural genomics, O-succinylbe | 96.58 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 96.57 | |
| 3s5s_A | 389 | Mandelate racemase/muconate lactonizing enzyme FA | 96.56 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 96.56 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 96.56 | |
| 3u9i_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 96.54 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.54 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 96.52 | |
| 3vc5_A | 441 | Mandelate racemase/muconate lactonizing protein; d | 96.42 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 96.41 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 96.41 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.4 | |
| 3ekg_A | 404 | Mandelate racemase/muconate lactonizing enzyme; st | 96.38 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 96.35 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.3 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 96.29 | |
| 1o60_A | 292 | 2-dehydro-3-deoxyphosphooctonate aldolase; structu | 96.28 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 96.27 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 96.26 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 96.25 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 96.24 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 96.24 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 96.24 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 96.2 | |
| 1wue_A | 386 | Mandelate racemase/muconate lactonizing enzyme FA | 96.13 | |
| 3cyj_A | 372 | Mandelate racemase/muconate lactonizing enzyme-LI | 96.12 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 96.11 | |
| 1kko_A | 413 | 3-methylaspartate ammonia-lyase; enolase superfami | 96.11 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.09 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 96.07 | |
| 2opj_A | 327 | O-succinylbenzoate-COA synthase; TIM barrel, struc | 96.06 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 96.05 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 96.05 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 96.05 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 96.04 | |
| 2p3z_A | 415 | L-rhamnonate dehydratase; enolase, structural geno | 96.03 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 95.99 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 95.96 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 95.95 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 95.93 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 95.93 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 95.86 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 95.85 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 95.84 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 95.83 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 95.82 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 95.79 | |
| 3qld_A | 388 | Mandelate racemase/muconate lactonizing protein; s | 95.74 | |
| 3fxg_A | 455 | Rhamnonate dehydratase; structural gemomics, enola | 95.73 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 95.7 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 95.69 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 95.68 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 95.68 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 95.58 | |
| 2fym_A | 431 | Enolase; RNA degradosome, enolase, lyase; 1.60A {E | 95.55 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 95.49 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 95.49 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 95.46 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 95.46 | |
| 1kcz_A | 413 | Beta-methylaspartase; beta zigzag, alpha/beta-barr | 95.45 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 95.44 | |
| 3ijl_A | 338 | Muconate cycloisomerase; enolase superfamily, dipe | 95.43 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 95.43 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 95.42 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 95.41 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 95.37 | |
| 4g8t_A | 464 | Glucarate dehydratase; enolase, enzyme function IN | 95.36 | |
| 3fs2_A | 298 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 95.36 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 95.35 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 95.29 | |
| 4h2h_A | 376 | Mandelate racemase/muconate lactonizing enzyme; en | 95.28 | |
| 1w6t_A | 444 | Enolase; bacterial infection, surface protein, moo | 95.28 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 95.25 | |
| 3tqp_A | 428 | Enolase; energy metabolism, lyase; 2.20A {Coxiella | 95.2 | |
| 3tml_A | 288 | 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, | 95.15 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 95.15 | |
| 3v5c_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 95.13 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 95.08 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 95.07 | |
| 2nwr_A | 267 | 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KD | 95.07 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 95.06 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.04 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 95.03 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 95.02 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 95.02 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 94.98 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 94.97 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 94.97 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 94.96 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 94.94 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 94.94 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 94.91 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 94.87 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 94.87 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 94.86 | |
| 3mzn_A | 450 | Glucarate dehydratase; lyase, structural genomics, | 94.8 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.8 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 94.79 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 94.79 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 94.77 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 94.76 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 94.73 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 94.72 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 94.72 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 94.72 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 94.7 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 94.7 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 94.64 | |
| 2okt_A | 342 | OSB synthetase, O-succinylbenzoic acid synthetase; | 94.63 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 94.63 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 94.62 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 94.55 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 94.54 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.43 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 94.41 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 94.4 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 94.38 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 94.37 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 94.34 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 94.31 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 94.3 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 94.28 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 94.23 | |
| 3p0w_A | 470 | Mandelate racemase/muconate lactonizing protein; s | 94.2 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 94.18 | |
| 3pfr_A | 455 | Mandelate racemase/muconate lactonizing protein; e | 94.16 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 94.13 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 94.1 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 94.05 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 93.95 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 93.94 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 93.94 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 93.92 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 93.89 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 93.88 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.88 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 93.87 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.87 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 93.86 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 93.86 | |
| 2pa6_A | 427 | Enolase; glycolysis, lyase, magnesium, metal-bindi | 93.81 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 93.75 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 93.75 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 93.74 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 93.74 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 93.73 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 93.62 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 93.58 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 93.56 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.56 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 93.55 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 93.53 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 93.52 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 93.5 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 93.49 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 93.48 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 93.48 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 93.48 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 93.38 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 93.37 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.33 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 93.33 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 93.29 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 93.23 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 93.2 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 93.19 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 93.17 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 93.13 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.13 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 93.01 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 92.92 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 92.84 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.8 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 92.73 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 92.73 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 92.7 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 92.69 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 92.63 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 92.59 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 92.58 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 92.55 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 92.24 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 92.22 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 92.19 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 92.16 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 92.16 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 92.09 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 92.0 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.96 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 91.96 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 91.96 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.9 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 91.81 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.77 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 91.71 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 91.65 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 91.6 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 91.47 | |
| 3qn3_A | 417 | Enolase; structural genomics, center for structura | 91.41 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 91.25 | |
| 3uj2_A | 449 | Enolase 1; enzyme function initiative, EFI, lyase; | 91.23 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 91.18 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 91.13 | |
| 1r6w_A | 322 | OSB synthase, O-succinylbenzoate synthase, OSBS; e | 91.09 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 91.08 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 91.05 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 91.03 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 91.02 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 91.0 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 90.99 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.76 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 90.73 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 90.72 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 90.42 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 90.23 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 90.17 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 90.1 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 90.01 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 89.92 |
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=255.76 Aligned_cols=197 Identities=20% Similarity=0.306 Sum_probs=172.9
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|++|+++.++++++++.+++||+||+|+|++..+..++++.++++|+++|+||+|+..+. +.++++|+.++++++ +
T Consensus 108 ~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~--~~~~~~~~~i~~i~~--~ 183 (318)
T 1vhn_A 108 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--FTGRAEWKALSVLEK--R 183 (318)
T ss_dssp GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--TSSCCCGGGGGGSCC--S
T ss_pred hhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEcCCCcccc--CCCCcCHHHHHHHHc--C
Confidence 468999999999999999999999999999877777999999999999999999998653 556789999999988 9
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh-CCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV 159 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~-~~~ 159 (230)
+||++||||+|++|+.++++.+|||+||+||+++.|||+|.++... +.+| ..++++..+.++++.+|++++.. +|.
T Consensus 184 ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~--~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~g~ 260 (318)
T 1vhn_A 184 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDF--LRSG-KYSEPSREEILRTFERHLELLIKTKGE 260 (318)
T ss_dssp SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHH--HHHS-CCCCCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred CeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHH--HhCC-CCCCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999888999999999999999999988753 2224 33446788899999999997654 464
Q ss_pred --hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHHh
Q 026945 160 --PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 207 (230)
Q Consensus 160 --~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 207 (230)
.+..+|+|+.+|+++ +++.+.+|+.|++++ +.+++.++++++++.
T Consensus 261 ~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~ 307 (318)
T 1vhn_A 261 RKAVVEMRKFLAGYTKD-LKGARRFREKVMKIE--EVQILKEMFYNFIKE 307 (318)
T ss_dssp HHHHHHHHTTHHHHTTT-CTTHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhc-CCChHHHHHHHHcCC--CHHHHHHHHHHHHHh
Confidence 478999999999987 799999999999998 999999999987653
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=255.20 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=170.6
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh----HHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCCCcccHHH
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL----QDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWNA 71 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~----~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~~~~~~~~ 71 (230)
|.+|+++.++++++++++++||++|+|+|++. +++.++++.++++|+++|+||+|++.+.. ...++.+|+.
T Consensus 108 ~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~ 187 (350)
T 3b0p_A 108 LLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDW 187 (350)
T ss_dssp GGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHH
T ss_pred HhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHH
Confidence 46899999999999999999999999998753 47899999999999999999999875411 1123468999
Q ss_pred HHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHH
Q 026945 72 IKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEY 150 (230)
Q Consensus 72 i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~y 150 (230)
++++++.+ ++||++||||+|++++.++++ |||+||+||+++.|||+|.++....+ + ..++++..+.++.+.+|
T Consensus 188 i~~ik~~~~~iPVianGgI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i~~~l~---~-~~~~~~~~~~~~~~~~~ 261 (350)
T 3b0p_A 188 VHRLKGDFPQLTFVTNGGIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEADRRVF---G-LPRRPSRLEVARRMRAY 261 (350)
T ss_dssp HHHHHHHCTTSEEEEESSCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTHHHHTT---C-CSCCCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEEECCcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHHHHHhc---C-CCCCCCHHHHHHHHHHH
Confidence 99999999 899999999999999999996 89999999999999999999986544 2 23456778889999999
Q ss_pred HHHHhhCCChhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHHh
Q 026945 151 LKLCEKYPVPWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 207 (230)
Q Consensus 151 l~~~~~~~~~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 207 (230)
++....++..++.+|+|+.||+++ +++.+.||+.|+++. +++++.++++++...
T Consensus 262 ~~~~~~~g~~~~~~~kh~~~~~~g-~~~~~~~r~~l~~~~--~~~~~~~~l~~~~~~ 315 (350)
T 3b0p_A 262 LEEEVLKGTPPWAVLRHMLNLFRG-RPKGRLWRRLLSEGR--SLQALDRALRLMEEE 315 (350)
T ss_dssp HHHHHHHTCCHHHHHTTSTTTTTT-STTHHHHHHHHHHHC--SHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHcc-CCCHHHHHHHHHCCC--CHHHHHHHHHHHhhh
Confidence 986655777789999999999998 799999999999997 999999999998654
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=169.37 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=106.8
Q ss_pred CCChHHHHHHHHHHhhc-------CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-----------cCC
Q 026945 1 MDNLPLVKSLVEKLALN-------LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDG 62 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~-------~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-----------~~~ 62 (230)
|++|+.+.++++++++. +++||+||+|.+++.++..++|+.++++|+|.|++|++|... ..+
T Consensus 195 l~~~~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gG 274 (367)
T 3zwt_A 195 LQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGG 274 (367)
T ss_dssp GGSHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSE
T ss_pred cCCHHHHHHHHHHHHHHHhhccccCCceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCC
Confidence 46899999999999764 689999999999888889999999999999999999987432 123
Q ss_pred CCCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh-hCCccccchhh
Q 026945 63 KKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFRT 125 (230)
Q Consensus 63 ~~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l-~nP~lf~~~~~ 125 (230)
++|++ .|+.++++++.+ ++|||++|||+|++|+.++++ +|||+||+||+++ .+||+|.++..
T Consensus 275 lSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l~-~GAd~V~vgra~l~~gP~~~~~i~~ 343 (367)
T 3zwt_A 275 LSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGKVKR 343 (367)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHHH
T ss_pred cCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHhcCcHHHHHHHH
Confidence 44444 368899999999 799999999999999999997 8999999999995 58999997753
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=164.85 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=106.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC------CChHHHHHHHHHHHHcCCCEEEEecC-CCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGR-TRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g------~~~~~~~~~a~~l~~~G~~~i~vh~r-t~~~~~~~~~~~~~~~i~~i 75 (230)
+++++.||+++|++++++||+||++.. ++.+++.++++.++++|+|+|+||.+ +..+.....+..+++.++++
T Consensus 193 R~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~i 272 (340)
T 3gr7_A 193 RYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELI 272 (340)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHH
Confidence 467899999999999999999999974 56788999999999999999999954 33221111234589999999
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++.+++||++||||+|+++++++++..+||+||+||+++.||+++.++...
T Consensus 273 k~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~ 323 (340)
T 3gr7_A 273 RREADIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARE 323 (340)
T ss_dssp HHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred HHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHH
Confidence 999999999999999999999999866699999999999999999988753
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-20 Score=163.46 Aligned_cols=124 Identities=10% Similarity=0.164 Sum_probs=108.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i 75 (230)
+++++.|+++++++++++||+||++. |++.+++.++++.++++|+++|+||+++.... ....+..+++.++++
T Consensus 193 r~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~i 272 (338)
T 1z41_A 193 RYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKI 272 (338)
T ss_dssp HHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHH
Confidence 46889999999999999999999998 56778899999999999999999999875421 111123578999999
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++.+++||++||||+|++++.++++.++||+||+||+++.||+++.++..+
T Consensus 273 r~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~~ 323 (338)
T 1z41_A 273 REQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQ 323 (338)
T ss_dssp HHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHcC
Confidence 999999999999999999999999866699999999999999999988754
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=167.15 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=105.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEec------------CCCC-----CcCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHG------------RTRD-----EKDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~------------rt~~-----~~~~~ 63 (230)
++|+.+.++++++++.+++||+||+|.+++..+..++++.++++| +++|++++ |+.. ...++
T Consensus 176 ~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGl 255 (354)
T 4ef8_A 176 YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGL 255 (354)
T ss_dssp GSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEE
T ss_pred cCHHHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCC
Confidence 589999999999999999999999999998888889999999998 99998754 3211 11234
Q ss_pred CCc----ccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchhh
Q 026945 64 KFR----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFRT 125 (230)
Q Consensus 64 ~~~----~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~~ 125 (230)
+|+ .+|+.++++++.. ++|||+||||+|++|+.+++. +|||+||+||+++.| ||+|.++..
T Consensus 256 SG~~i~p~a~~~i~~v~~~~~~ipII~~GGI~s~~da~~~l~-aGAd~V~vgra~l~~GP~~~~~i~~ 322 (354)
T 4ef8_A 256 GGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFERLTS 322 (354)
T ss_dssp EGGGGHHHHHHHHHHHHHHCTTSEEEEESCCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHhCCCCCEEEECCcCCHHHHHHHHH-cCCCEEEEhHHHHHhCHHHHHHHHH
Confidence 443 5799999999987 699999999999999999997 899999999999999 999997753
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=163.79 Aligned_cols=123 Identities=18% Similarity=0.216 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHhhcC---------CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------C
Q 026945 2 DNLPLVKSLVEKLALNL---------NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------D 61 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~---------~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~ 61 (230)
.+++++.++++++++.+ ++||+||++.+++.+++.++++.++++|+|+|++|+++.... .
T Consensus 185 ~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~g 264 (336)
T 1f76_A 185 QYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTG 264 (336)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSS
T ss_pred cCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCC
Confidence 46889999999999987 899999999888878899999999999999999998763210 1
Q ss_pred CCCCcc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 62 GKKFRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 62 ~~~~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
+++|++ .++.++++++.+ ++|||++|||+|++|+.++++ .|||+||+||+++. |||+|.++..
T Consensus 265 g~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~i~~ 334 (336)
T 1f76_A 265 GLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKEIVT 334 (336)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHHHHH
T ss_pred CcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHHHHh
Confidence 123332 357889999988 899999999999999999998 79999999999998 9999998753
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-20 Score=165.69 Aligned_cols=124 Identities=17% Similarity=0.119 Sum_probs=107.1
Q ss_pred CCChHHHHHHHHHHhhc--------------------CCce-EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC
Q 026945 1 MDNLPLVKSLVEKLALN--------------------LNVP-VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE 59 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~--------------------~~~p-vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~ 59 (230)
|++|+.+.++++++++. .++| |+||++.+++.++..++|+.++++|+|.|++|++|..+
T Consensus 230 lq~~~~l~~ll~aV~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r 309 (415)
T 3i65_A 230 NQEAGKLKNIILSVKEEIDNLEKNNIMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQI 309 (415)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHCCSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCC
T ss_pred ccCHHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCccc
Confidence 57899999999999875 2689 99999999887889999999999999999999988642
Q ss_pred ---------cCCCCCcccH----HHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccch
Q 026945 60 ---------KDGKKFRADW----NAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGF 123 (230)
Q Consensus 60 ---------~~~~~~~~~~----~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~ 123 (230)
..+++|++.| +.++++++.+ ++|||++|||.|++|+.+++. +|||+||+||+++.+ ||+|.++
T Consensus 310 ~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~-aGAd~VqIgra~l~~GP~~~~~i 388 (415)
T 3i65_A 310 NDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQI 388 (415)
T ss_dssp CCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHH-HTEEEEEESHHHHHHGGGHHHHH
T ss_pred ccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHhcCHHHHHHH
Confidence 1235566665 7899999998 799999999999999999997 899999999999988 9999877
Q ss_pred hh
Q 026945 124 RT 125 (230)
Q Consensus 124 ~~ 125 (230)
..
T Consensus 389 ~~ 390 (415)
T 3i65_A 389 KR 390 (415)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=159.45 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=105.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC-----C---C---------cCCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR-----D---E---------KDGKK 64 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~-----~---~---------~~~~~ 64 (230)
.+|+.+.++++++++.+++||++|++.+++.++..++++.++++|+|+|++|+++. + . ..+++
T Consensus 141 ~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~s 220 (311)
T 1jub_A 141 YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIG 220 (311)
T ss_dssp GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccc
Confidence 37899999999999999999999999988878888999999999999999999861 1 0 01222
Q ss_pred Cc----ccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 65 FR----ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 65 ~~----~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ ..|+.++++++.+ ++||+++|||+|++|+.+++. +|||+||+||+++. +||+|.++..
T Consensus 221 g~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~-~GAd~V~vg~~~l~~~p~~~~~i~~ 287 (311)
T 1jub_A 221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDRIIK 287 (311)
T ss_dssp SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEchHHHhcCcHHHHHHHH
Confidence 33 2488999999999 899999999999999999996 79999999999996 9999987753
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-19 Score=158.44 Aligned_cols=122 Identities=16% Similarity=0.242 Sum_probs=105.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecCCC-----C---C---------cCCCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGRTR-----D---E---------KDGKK 64 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~rt~-----~---~---------~~~~~ 64 (230)
+|+.+.++++++++.+++||++|++.+++.++..++++.++++| +|+|++|+++. + . ..+++
T Consensus 144 ~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~s 223 (314)
T 2e6f_A 144 DFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLG 223 (314)
T ss_dssp SHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccC
Confidence 78899999999999889999999999888888999999999999 99999999871 1 0 01122
Q ss_pred Cc----ccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 65 FR----ADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 65 ~~----~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++ ..|+.++++++.+ ++||+++|||+|++|+.+++. .|||+||+||+++. +||+|.++..
T Consensus 224 g~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~~~da~~~l~-~GAd~V~ig~~~l~~~p~~~~~i~~ 289 (314)
T 2e6f_A 224 GKYILPTALANVNAFYRRCPDKLVFGCGGVYSGEDAFLHIL-AGASMVQVGTALQEEGPGIFTRLED 289 (314)
T ss_dssp SGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-HTCSSEEECHHHHHHCTTHHHHHHH
T ss_pred cccccHHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHH-cCCCEEEEchhhHhcCcHHHHHHHH
Confidence 32 3489999999999 999999999999999999996 79999999999996 9999998753
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=157.72 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=104.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEE-ecCCCCCcCCCCCcccHHHHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAV-HGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~v-h~rt~~~~~~~~~~~~~~~i~ 73 (230)
+++++.||+++|++++ ++||+||++. |++.+++.++++.|+++ +|+|++ |+++..+.....+..+|++++
T Consensus 192 R~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3kru_A 192 RARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAE 270 (343)
T ss_dssp HTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHH
Confidence 4688999999999998 6899999997 34578899999999999 999999 577654321112345899999
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++++.+++||++||+|+|+++++++++..+||+||+||+++.||+++.++.
T Consensus 271 ~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 271 TIKKRCNIKTSAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY 321 (343)
T ss_dssp HHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred HHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence 999999999999999999999999999777999999999999999999876
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=155.17 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=105.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEec-CCCCCcCC-CCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDG-KKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~-~~~~~~~~~i 72 (230)
+++++.|+++++++++ ++||+||++. |++.+++.++++.|+++|+|+|++|. ++...... ..+..+++.+
T Consensus 201 R~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 280 (349)
T 3hgj_A 201 RMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFA 280 (349)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHH
Confidence 4678999999999998 7999999997 56788999999999999999999994 44322111 1123588999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+++++.+++||+++|+|+|+++++++++...||+|++||+++.||+++.++..
T Consensus 281 ~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~ 333 (349)
T 3hgj_A 281 DAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAAK 333 (349)
T ss_dssp HHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHH
T ss_pred HHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHHH
Confidence 99999999999999999999999999986569999999999999999998764
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=158.15 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCC---------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVF---------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g---------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.||+++|+++++- ||+||++.. ++.+++.++++.++++|+++|++|+++..+. ..+ .+|+.+
T Consensus 215 R~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--~~~-~~~~~~ 291 (377)
T 2r14_A 215 RARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGG--DIT-YPEGFR 291 (377)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--------C-CCTTHH
T ss_pred chHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCC--CCc-chHHHH
Confidence 467899999999998853 999999974 2346789999999999999999999876432 112 368899
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++||++|||| +++++.++++.++||+||+||+++.|||++.++..+
T Consensus 292 ~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g 344 (377)
T 2r14_A 292 EQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLG 344 (377)
T ss_dssp HHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhCchHHHHHHcC
Confidence 99999999999999999 699999999977799999999999999999988754
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.78 E-value=8e-19 Score=156.30 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEE-------------EecCCCCC-----cCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLA-------------VHGRTRDE-----KDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~-------------vh~rt~~~-----~~~~ 63 (230)
+||+.+.++++++++.+++||+||+|.+.+ ..++++.++++|++.|+ +|.|+... ..++
T Consensus 176 ~~~e~l~~il~av~~~~~~PV~vKi~p~~~---~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGl 252 (345)
T 3oix_A 176 YDFETTDQILSEVFTYFTKPLGIKLPPYFD---IVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGI 252 (345)
T ss_dssp GCHHHHHHHHHHHTTTCCSCEEEEECCCCC---HHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEECCCCC---HHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCc
Confidence 689999999999999999999999998754 45666666666665443 56554321 2335
Q ss_pred CCccc----HHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh-hhhCCccccchhh
Q 026945 64 KFRAD----WNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES-LLENPALFAGFRT 125 (230)
Q Consensus 64 ~~~~~----~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~-~l~nP~lf~~~~~ 125 (230)
+|++. |+.++++++.+ ++|||++|||.|++|+.+++. +|||+||+||+ ++.+||+|.++..
T Consensus 253 SG~ai~p~a~~~v~~i~~~~~~~ipIIg~GGI~s~~da~~~l~-aGAd~V~igra~~~~gP~~~~~i~~ 320 (345)
T 3oix_A 253 GGDYVKPTALANVHAFYKRLNPSIQIIGTGGVXTGRDAFEHIL-CGASMVQIGTALHQEGPQIFKRITK 320 (345)
T ss_dssp EEGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCCCcEEEECCCCChHHHHHHHH-hCCCEEEEChHHHhcChHHHHHHHH
Confidence 56665 78999999998 699999999999999999997 89999999999 8999999987753
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=9.9e-19 Score=160.19 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCce-EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC---------cCCCCCcc----cHHHHHHHHhhC--Cc
Q 026945 18 LNVP-VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------KDGKKFRA----DWNAIKAVKNAL--RI 81 (230)
Q Consensus 18 ~~~p-vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------~~~~~~~~----~~~~i~~i~~~~--~i 81 (230)
.++| |+||++.+++.++..++|+.++++|+|+|++|++|... ..+++|++ .++.++++++.+ ++
T Consensus 295 ~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~i 374 (443)
T 1tv5_A 295 KKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQI 374 (443)
T ss_dssp SSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCC
Confidence 3689 99999998887789999999999999999999998632 12233443 368899999998 89
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
|||++|||.|++|+.+++. .|||+||+||+++. +||++.++..
T Consensus 375 PVIg~GGI~s~~DA~e~l~-aGAd~Vqigrall~~gP~l~~~i~~ 418 (443)
T 1tv5_A 375 PIIASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQIKR 418 (443)
T ss_dssp CEEEESSCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHhcChHHHHHHHH
Confidence 9999999999999999997 89999999999886 9999998753
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=154.58 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=103.1
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCC--C--------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVF--P--------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g--~--------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
+++++.||+++++++++ -||++|++.+ + +.+++.++++.++++|+++|++|+++..+. .+..|+.
T Consensus 210 r~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~----~~~~~~~ 285 (364)
T 1vyr_A 210 RARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGG----KPYSEAF 285 (364)
T ss_dssp HTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBC----CCCCHHH
T ss_pred ChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCC----CcccHHH
Confidence 46789999999999984 3999999986 2 234688899999999999999999876432 1246889
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++++++.+++||++||+| |++++.++++.++||+||+||+++.|||++.++..+
T Consensus 286 ~~~v~~~~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g 339 (364)
T 1vyr_A 286 RQKVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKK 339 (364)
T ss_dssp HHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHHHCCCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhChhHHHHHHcC
Confidence 999999999999999999 999999999977799999999999999999988754
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-18 Score=158.01 Aligned_cols=123 Identities=11% Similarity=0.126 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCCC---------ChHHHHHHHHHHHHcC------CCEEEEecCCCCCcCCCC--
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVFP---------NLQDTIKYAKMLEDAG------CSLLAVHGRTRDEKDGKK-- 64 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g~---------~~~~~~~~a~~l~~~G------~~~i~vh~rt~~~~~~~~-- 64 (230)
+++++.||+++|+++++ .||+||++... +.+++.++++.|+++| +++|+||+++..+.....
T Consensus 220 R~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~ 299 (402)
T 2hsa_B 220 RCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAG 299 (402)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSST
T ss_pred hhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccc
Confidence 47889999999999985 49999999752 2356899999999999 999999999765411111
Q ss_pred ---Cc-ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 65 ---FR-ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 65 ---~~-~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+ .+|++++++++.+++|||+|||| |++++++++++++||+||+||+++.|||++.++..+
T Consensus 300 ~~~~~~~~~~~~~~vk~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~~g 364 (402)
T 2hsa_B 300 RLGSEEEEARLMRTLRNAYQGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLN 364 (402)
T ss_dssp TTTHHHHHHHHHHHHHHHCSSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred cccCCcchHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHHHHhC
Confidence 02 36889999999999999999999 999999999987899999999999999999988754
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=153.79 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCC-C--------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVF-P--------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g-~--------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.||+++++++++- ||++|++.. + +.+++.++++.++++|+++|++|+++.... +...|+.+
T Consensus 210 r~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~----~~~~~~~~ 285 (365)
T 2gou_A 210 RLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDA----PDTPVSFK 285 (365)
T ss_dssp HTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBC----CCCCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCC----CCccHHHH
Confidence 467899999999998843 999999983 2 345788999999999999999999875321 12357899
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++|||+|||| |++++.++++.++||+||+||+++.|||++.++..+
T Consensus 286 ~~i~~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~~g 338 (365)
T 2gou_A 286 RALREAYQGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIANPDLPERLRHG 338 (365)
T ss_dssp HHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHHT
T ss_pred HHHHHHCCCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHhCchHHHHHHcC
Confidence 99999999999999999 999999999976799999999999999999988754
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=157.32 Aligned_cols=122 Identities=14% Similarity=0.159 Sum_probs=104.5
Q ss_pred ChHHHHHHHHHHhhcC------CceEEEEECC--------CCChHHHHHHHHHHHH-cCCCEEEEecCCCCCc---CCCC
Q 026945 3 NLPLVKSLVEKLALNL------NVPVSCKIRV--------FPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEK---DGKK 64 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~------~~pvsvKiR~--------g~~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~---~~~~ 64 (230)
++.++.||+++|++++ ++||++|++. |++.+++.++++.|++ +|+|+|+||+++.... ....
T Consensus 220 R~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~ 299 (419)
T 3l5a_A 220 RARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTP 299 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCS
T ss_pred hhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCC
Confidence 4678999999999887 6899999998 5677899999999999 9999999999875211 1112
Q ss_pred Cc-ccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 65 FR-ADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 65 ~~-~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++ .+|+.++.+++.+ ++|||+||||+|+++++++++. ||+||+||+++.||+++.++..+
T Consensus 300 g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki~~G 362 (419)
T 3l5a_A 300 GDHFGRPVNQIVYEHLAGRIPLIASGGINSPESALDALQH--ADMVGMSSPFVTEPDFVHKLAEQ 362 (419)
T ss_dssp STTTTSBHHHHHHHHHTTSSCEEECSSCCSHHHHHHHGGG--CSEEEESTHHHHCTTHHHHHHTT
T ss_pred CccccHHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHh--CCcHHHHHHHHHCcHHHHHHHcC
Confidence 22 4678899999988 5999999999999999999985 99999999999999999998765
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-18 Score=156.76 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=101.5
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCCC---------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g~---------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.||+++|+++++- ||++|++... +.+++.++++.|+++|+++|++|+++..+. .++..+|+.+
T Consensus 216 R~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~--~~~~~~~~~~ 293 (376)
T 1icp_A 216 RCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--WEKIECTESL 293 (376)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCC--CCccccHHHH
Confidence 467899999999999853 9999999641 234688999999999999999999876532 1122467788
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++||++||+| +++++.++++.++||+||+||+++.|||++.++..+
T Consensus 294 ~~vr~~~~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g 346 (376)
T 1icp_A 294 VPMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFELN 346 (376)
T ss_dssp HHHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHHcCCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHHcC
Confidence 99999999999999999 999999999987899999999999999999988754
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-18 Score=151.84 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCC-------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC--CCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVF-------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g-------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~~~~~~i 72 (230)
++++.||++++++++ ++||+||++.. ++.+++.++++.|+++|+++|+||+++...... ..+..+++.+
T Consensus 208 ~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~ 287 (363)
T 3l5l_A 208 SRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIA 287 (363)
T ss_dssp HHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHH
Confidence 578999999999998 68999999973 445688999999999999999999865322111 1123578999
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+++++.+++||+++|+|+|+++++++++..+||+|++||+++.||+++.++..
T Consensus 288 ~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~ 340 (363)
T 3l5l_A 288 ERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAK 340 (363)
T ss_dssp HHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHH
T ss_pred HHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHHH
Confidence 99999999999999999999999999986669999999999999999998764
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=144.54 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---------ecCCCCC-----cCCCCCcc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---------HGRTRDE-----KDGKKFRA 67 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---------h~rt~~~-----~~~~~~~~ 67 (230)
.+|+++.++++++++.+++||.+|++.++ .+..++++.++++|+|+|++ |.+++.. ..++.++.
T Consensus 147 ~~~~~~~eii~~v~~~~~~pv~vk~~~~~--~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~ 224 (311)
T 1ep3_A 147 TDPEVAAALVKACKAVSKVPLYVKLSPNV--TDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPA 224 (311)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCS--SCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCh--HHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCcc
Confidence 37889999999999988999999999765 34568899999999999999 5554321 01234444
Q ss_pred c----HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 68 D----WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 68 ~----~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
. ++.++++++.+++||+++|||+|++|+.++++ .|||+|++||+++.+|+++.++.
T Consensus 225 ~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~-~GAd~V~vg~~~l~~p~~~~~i~ 284 (311)
T 1ep3_A 225 IKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp GHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHH-HTCSEEEECTHHHHCTTHHHHHH
T ss_pred chHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCCEEEECHHHHcCcHHHHHHH
Confidence 4 47889999999999999999999999999997 79999999999999999988765
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=148.35 Aligned_cols=113 Identities=14% Similarity=0.162 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCCC--------C-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVFP--------N-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g~--------~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.||+++|+++++- ||+||++... + .+++.++++.|+++|+++|+||+++ . + + +.+
T Consensus 202 R~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~-~---~---~---~~~ 271 (362)
T 4ab4_A 202 RARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRAETFTYVARELGKRGIAFICSRERE-A---D---D---SIG 271 (362)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCC-C---T---T---CCH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCC-C---C---H---HHH
Confidence 467899999999998843 9999999742 1 3468899999999999999999986 1 1 1 457
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++|||+||++ |+++++++++.++||+||+||+++.|||++.++..+
T Consensus 272 ~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~~~g 324 (362)
T 4ab4_A 272 PLIKEAFGGPYIVNERF-DKASANAALASGKADAVAFGVPFIANPDLPARLAAD 324 (362)
T ss_dssp HHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred HHHHHHCCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHcC
Confidence 88999999999999999 999999999977799999999999999999988764
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=146.64 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=97.9
Q ss_pred ChHHHHHHHHHHhhcCCc-eEEEEECCCC---------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLNV-PVSCKIRVFP---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~-pvsvKiR~g~---------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.||+++|+++++- ||+||++... +.+++.++++.|+++|+++|+||+++. + + +.+
T Consensus 210 R~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~----~---~---~~~ 279 (361)
T 3gka_A 210 RARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAFLFARESFG----G---D---AIG 279 (361)
T ss_dssp HSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS----T---T---CCH
T ss_pred cHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC----C---H---HHH
Confidence 467999999999998843 9999999731 135688999999999999999999861 1 1 457
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++|||+||++ |+++++++++.++||+||+||+++.|||++.++..+
T Consensus 280 ~~ik~~~~iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~~g 332 (361)
T 3gka_A 280 QQLKAAFGGPFIVNENF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRRFKLN 332 (361)
T ss_dssp HHHHHHHCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHHcCCCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHHhC
Confidence 88999999999999999 999999999977799999999999999999998764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=155.86 Aligned_cols=124 Identities=12% Similarity=0.199 Sum_probs=106.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC----CCCCc-ccH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD----GKKFR-ADW 69 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~----~~~~~-~~~ 69 (230)
+++++.|+++++++++ ++||++|++. |++.+++.++++.++++|+++|++|+++.+... .+.++ ..+
T Consensus 190 r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~ 269 (671)
T 1ps9_A 190 RMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFS 269 (671)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTH
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHH
Confidence 4788999999999998 7999999996 567788999999999999999999987654321 11222 346
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
++++++++.+++||++||+|+|++++.++++..+||+||+||+++.||+++.++..+
T Consensus 270 ~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g 326 (671)
T 1ps9_A 270 WVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSG 326 (671)
T ss_dssp HHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTT
T ss_pred HHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHHcC
Confidence 899999999999999999999999999999976799999999999999999987754
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.3e-17 Score=146.33 Aligned_cols=117 Identities=13% Similarity=0.093 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCC---------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVF---------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g---------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+++++.|++++|+++++ -||++|++.. ++.+++.++++.|+++|+++|++|+++... ..+ ..+ +
T Consensus 226 R~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~-~~~----~~~-~ 299 (379)
T 3aty_A 226 RCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVN-QQI----GDV-V 299 (379)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTS-CCC----CCH-H
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCC-CCc----cHH-H
Confidence 46789999999999885 4899999983 234678999999999999999999986432 111 236 8
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+++++.+++||++||+| |++++.++++.++||+||+||+++.||+++.++..+
T Consensus 300 ~~ir~~~~iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g 352 (379)
T 3aty_A 300 AWVRGSYSGVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIANPDLVERAQQN 352 (379)
T ss_dssp HHHHTTCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHHCCCcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHHcC
Confidence 99999999999999999 999999999977799999999999999999988754
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.6e-17 Score=154.70 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=103.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---CC-CCCcccHH
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DG-KKFRADWN 70 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---~~-~~~~~~~~ 70 (230)
++.++.||++++++++ ++||.+|+.. |++.+++.++++.+++ |+|+|+||+++.... .. .....+++
T Consensus 206 R~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~~~~~~~~~~~~~~~~~~ 284 (690)
T 3k30_A 206 RMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSWEGDSVTSRFAPEGRQEE 284 (690)
T ss_dssp HTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCHHHHTCCTTTCCTTTTHH
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccccccCCCCccCCccccHH
Confidence 4679999999999998 6788888854 5567889999999998 899999998763210 11 12345678
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.++++++.+++|||+||+|++++++++++++++||+||+||+++.|||++.++..+
T Consensus 285 ~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~~g 340 (690)
T 3k30_A 285 FVAGLKKLTTKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIRDG 340 (690)
T ss_dssp HHTTSGGGCSSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred HHHHHHHHcCCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHHcC
Confidence 99999999999999999999999999999987899999999999999999988765
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=154.25 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=104.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECC-------CCC-hHHHHHHHHHHHHcCCCEEEEecCCC---CC---cCCCCC-
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRV-------FPN-LQDTIKYAKMLEDAGCSLLAVHGRTR---DE---KDGKKF- 65 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~-------g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~---~~---~~~~~~- 65 (230)
+++++.||++++++++ ++||++|++. |++ .+++.++++.+++ |+|+|+||.++. .. ...+.+
T Consensus 198 R~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~~~~~~~~ 276 (729)
T 1o94_A 198 RARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAGPSRFYQQ 276 (729)
T ss_dssp HTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSCCTTTCCT
T ss_pred HhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCchHHHHHHHHHHHh-hcCEEEEeeecccccccccCCccccCc
Confidence 4789999999999998 7999999985 455 5688999999988 799999998752 11 011222
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+|+.++++++.+++|||+||+|+|++++.++++.++||+||+||+++.|||++.++..+
T Consensus 277 ~~~~~~~~~i~~~~~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g 337 (729)
T 1o94_A 277 GHTIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQG 337 (729)
T ss_dssp TTTHHHHHHHHTTCSSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTT
T ss_pred cccHHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHHcC
Confidence 2368999999999999999999999999999999987799999999999999999988765
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=137.02 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=93.8
Q ss_pred hHHHHHHHHHHh-hcCCceEEEEEC---------CCCChH---HHH-HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 4 LPLVKSLVEKLA-LNLNVPVSCKIR---------VFPNLQ---DTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 4 p~~~~eiv~~v~-~~~~~pvsvKiR---------~g~~~~---~~~-~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
|+++.++++++. +.+-+++.+|+| -||... +.. ++++.+++. ++.|.+|++++++. +.| +||
T Consensus 115 p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~--~~G-~d~ 190 (260)
T 2agk_A 115 LKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGL--CGG-IDE 190 (260)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC---------CC-CCH
T ss_pred HHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccC--cCC-CCH
Confidence 999999999997 555566666643 146421 456 999999999 99999999999865 344 499
Q ss_pred HHHHHHHhhC----CccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhh--hhCC-ccccchh
Q 026945 70 NAIKAVKNAL----RIPVLANGNVRHMEDVQKCLEET-GCEGVLSAESL--LENP-ALFAGFR 124 (230)
Q Consensus 70 ~~i~~i~~~~----~ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~--l~nP-~lf~~~~ 124 (230)
+.++++++.+ ++|||+||||.|++|+.++++.+ ||++||+||++ +.+| |.|.++.
T Consensus 191 eli~~l~~~~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~ 253 (260)
T 2agk_A 191 LLVSKLFEWTKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCC 253 (260)
T ss_dssp HHHHHHHHHHTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHH
T ss_pred HHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHH
Confidence 9999999999 99999999999999999999877 99999999997 9998 9998764
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-16 Score=130.37 Aligned_cols=119 Identities=19% Similarity=0.265 Sum_probs=98.4
Q ss_pred CChHHHHHHHHHHhhcC----Cce-----EEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 2 DNLPLVKSLVEKLALNL----NVP-----VSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~----~~p-----vsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
.+|+++.++++.+.... +.+ .+||+| +|.. .++.++++.+++.|++.|.+|+|++.+. +. +.+|+
T Consensus 108 ~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~-g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~--~~-g~~~~ 183 (244)
T 2y88_A 108 ENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGR-GWETDGGDLWDVLERLDSEGCSRFVVTDITKDGT--LG-GPNLD 183 (244)
T ss_dssp HCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEG-GGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTT--TS-CCCHH
T ss_pred hChHHHHHHHHHcCCCEEEEEeccccCCCCEEEEC-CccCCCCCHHHHHHHHHhCCCCEEEEEecCCccc--cC-CCCHH
Confidence 47888889988876443 333 357788 6631 2578999999999999999999998753 23 35999
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhh--CCcEEEEehhhhhCCccccchh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEET--GCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~--gadgVmigR~~l~nP~lf~~~~ 124 (230)
.++++++.+++||+++|||++++|+.++++.+ |||+||+||+++.+||.|.++.
T Consensus 184 ~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~ 239 (244)
T 2y88_A 184 LLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQAL 239 (244)
T ss_dssp HHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred HHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence 99999999999999999999999999999755 9999999999999999988764
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=152.56 Aligned_cols=117 Identities=18% Similarity=0.282 Sum_probs=99.3
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE----------------------ecCCCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV----------------------HGRTRDE 59 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v----------------------h~rt~~~ 59 (230)
.+|+++.++++++++.+++||+||++.+. .+..++++.++++|+|+|++ |+|+..
T Consensus 686 ~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~--~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~- 762 (1025)
T 1gte_A 686 QDPELVRNICRWVRQAVQIPFFAKLTPNV--TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTY- 762 (1025)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCS--SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCC-
T ss_pred cCHHHHHHHHHHHHHhhCCceEEEeCCCh--HHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccC-
Confidence 68999999999999999999999999643 46889999999999999999 454433
Q ss_pred cCCCCCcccH----HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccch
Q 026945 60 KDGKKFRADW----NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGF 123 (230)
Q Consensus 60 ~~~~~~~~~~----~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~ 123 (230)
.++++++.| +.++++++.+ ++|||++|||+|++|+.+++. .|||+||+||+++.+ |.++..+
T Consensus 763 -gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~da~~~l~-~Ga~~v~vg~~~l~~~~~~~~~~ 830 (1025)
T 1gte_A 763 -GGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDY 830 (1025)
T ss_dssp -EEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHH
T ss_pred -CCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHHHHHHHH-cCCCEEEEeeccccCCccHHHHH
Confidence 235566665 7899999998 899999999999999999998 899999999999984 4455544
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-16 Score=139.60 Aligned_cols=123 Identities=19% Similarity=0.163 Sum_probs=98.4
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCCC---------C----hHHHHHHHHHH---HHcC--CCEEEEe-cCCCCCcCC
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVFP---------N----LQDTIKYAKML---EDAG--CSLLAVH-GRTRDEKDG 62 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g~---------~----~~~~~~~a~~l---~~~G--~~~i~vh-~rt~~~~~~ 62 (230)
+++++.||+++|+++++ -||++|++... + .+++..+++.| ++.| +++|+|| +|+..+...
T Consensus 217 r~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~~~~~ 296 (407)
T 3tjl_A 217 RARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDV 296 (407)
T ss_dssp HHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEETTEEC
T ss_pred ChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCCCCcC
Confidence 46789999999999885 48999999732 2 34578899999 8889 9999999 665433211
Q ss_pred CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHh---hCCcEEEEehhhhhCCccccchhhh
Q 026945 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEE---TGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 63 ~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~---~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+..+|+.+..+++.+++|||+||||++.+++.++++. ++||+||+||+++.|||++.+++.+
T Consensus 297 -~~~~~~~~~~~ir~~~~~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri~~g 362 (407)
T 3tjl_A 297 -SEEDQAGDNEFVSKIWKGVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDG 362 (407)
T ss_dssp -CGGGCCCCSHHHHHHCCSEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHHHHT
T ss_pred -CccchhHHHHHHHHHhCCCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHHHcC
Confidence 11123566788888899999999999999988888876 7899999999999999999988764
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-15 Score=138.91 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
++.++++.++++|++.|.+|++++.+. +. ++||+.++++++.+++|||+||||.|++|+.++++.+|||+||+||++
T Consensus 453 ~~~e~a~~~~~~Ga~~il~t~~~~dG~--~~-G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~ 529 (555)
T 1jvn_A 453 GVWELTRACEALGAGEILLNCIDKDGS--NS-GYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 529 (555)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTTT--CS-CCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCC--CC-CCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 478999999999999999999999864 33 469999999999999999999999999999999987899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.+||.|.++..
T Consensus 530 ~~~~~~~~e~~~ 541 (555)
T 1jvn_A 530 HRGEFTVNDVKE 541 (555)
T ss_dssp HTTSCCHHHHHH
T ss_pred HcCCCCHHHHHH
Confidence 999999998763
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-15 Score=135.12 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 79 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-- 79 (230)
.||.+..+.++.+++.+++||.+|... +.+.++.+.++|+|.|+|++....+. ..+++.++.+.++++.+
T Consensus 200 ~d~~~~w~~i~~lr~~~~~PvivK~v~------~~e~A~~a~~~GaD~I~vsn~GG~~~--d~~~~~~~~L~~i~~av~~ 271 (352)
T 3sgz_A 200 PKASFCWNDLSLLQSITRLPIILKGIL------TKEDAELAMKHNVQGIVVSNHGGRQL--DEVSASIDALREVVAAVKG 271 (352)
T ss_dssp CCTTCCHHHHHHHHHHCCSCEEEEEEC------SHHHHHHHHHTTCSEEEECCGGGTSS--CSSCCHHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEecC------cHHHHHHHHHcCCCEEEEeCCCCCcc--CCCccHHHHHHHHHHHhCC
Confidence 367777889999999999999999873 24668999999999999966543332 23577899999999887
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH-hhCC
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKYP 158 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~-~~~~ 158 (230)
++|||++|||++..|+.++|. .|||+||+||+++..+.. .+. ....+.++.+.++++.. ...|
T Consensus 272 ~ipVia~GGI~~g~Dv~kaLa-lGA~aV~iGr~~l~~l~~-----~G~----------~gv~~~l~~l~~el~~~m~~~G 335 (352)
T 3sgz_A 272 KIEVYMDGGVRTGTDVLKALA-LGARCIFLGRPILWGLAC-----KGE----------DGVKEVLDILTAELHRCMTLSG 335 (352)
T ss_dssp SSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHHHHHH-----HHH----------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHHHHHh-----cCc----------HHHHHHHHHHHHHHHHHHHHhC
Confidence 799999999999999999998 899999999977654331 111 12335667777777743 3444
Q ss_pred C-hhHHHHHHHHHH
Q 026945 159 V-PWRMIRSHVHKL 171 (230)
Q Consensus 159 ~-~~~~~r~h~~~~ 171 (230)
. .+..+++++.||
T Consensus 336 ~~~i~el~~~~~~y 349 (352)
T 3sgz_A 336 CQSVAEISPDLIQF 349 (352)
T ss_dssp CSBGGGCCGGGBSS
T ss_pred CCcHHHHhhhcchh
Confidence 3 366677665543
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=122.36 Aligned_cols=120 Identities=18% Similarity=0.246 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEE---E-CCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCK---I-RVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvK---i-R~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i 75 (230)
.+|+++.++++.....+.+.++++ + +-+|.. .+..++++.+++.|++.|.+|++++... .. +.+|+.++++
T Consensus 109 ~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~--~~-g~~~~~~~~i 185 (244)
T 1vzw_A 109 ETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGT--LQ-GPNLELLKNV 185 (244)
T ss_dssp HCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHHHH
T ss_pred hCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccc--cC-CCCHHHHHHH
Confidence 468888888888765444455554 1 224531 1578899999999999999999987643 22 4699999999
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhh--CCcEEEEehhhhhCCccccchh
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEET--GCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~--gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.+++||+++|||++++++.++++.+ |||+||+||+++.+||.|.++.
T Consensus 186 ~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~ 236 (244)
T 1vzw_A 186 CAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEAL 236 (244)
T ss_dssp HHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred HHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHH
Confidence 999999999999999999999999755 9999999999999999888654
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=129.78 Aligned_cols=140 Identities=19% Similarity=0.196 Sum_probs=103.9
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
|+.+..++++.+++.+++||.+|.- .+.+.++.+.++|+|+|+|++....+ .+.+++.|+.+.++++.+ +
T Consensus 213 d~~~~~~~i~~lr~~~~~PvivK~v------~~~e~a~~a~~~Gad~I~vs~~ggr~--~~~g~~~~~~l~~v~~~v~~~ 284 (368)
T 2nli_A 213 KQKISPRDIEEIAGHSGLPVFVKGI------QHPEDADMAIKRGASGIWVSNHGARQ--LYEAPGSFDTLPAIAERVNKR 284 (368)
T ss_dssp CSBCCHHHHHHHHHHSSSCEEEEEE------CSHHHHHHHHHTTCSEEEECCGGGTS--CSSCCCHHHHHHHHHHHHTTS
T ss_pred CchhhHHHHHHHHHHcCCCEEEEcC------CCHHHHHHHHHcCCCEEEEcCCCcCC--CCCCCChHHHHHHHHHHhCCC
Confidence 6777888999999999999999953 13567899999999999996643333 244678999999999987 6
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH-hhCCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKYPV 159 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~-~~~~~ 159 (230)
+|||++|||++.+|+.++|. .|||+|||||+++ +.....+. ....+.++.+.++++.. ..+|.
T Consensus 285 ipVia~GGI~~g~D~~kala-lGAd~V~iGr~~l-----~~~~~~G~----------~gv~~~l~~l~~el~~~m~~~G~ 348 (368)
T 2nli_A 285 VPIVFDSGVRRGEHVAKALA-SGADVVALGRPVL-----FGLALGGW----------QGAYSVLDYFQKDLTRVMQLTGS 348 (368)
T ss_dssp SCEEECSSCCSHHHHHHHHH-TTCSEEEECHHHH-----HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCHHHHHHHHH-cCCCEEEECHHHH-----HHHHhcCh----------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999998 8999999999554 44322111 12345667777777744 33342
Q ss_pred -hhHHHHH
Q 026945 160 -PWRMIRS 166 (230)
Q Consensus 160 -~~~~~r~ 166 (230)
.+..+++
T Consensus 349 ~~i~~l~~ 356 (368)
T 2nli_A 349 QNVEDLKG 356 (368)
T ss_dssp SSHHHHHT
T ss_pred cCHHHhcc
Confidence 2444544
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=117.38 Aligned_cols=118 Identities=17% Similarity=0.300 Sum_probs=94.0
Q ss_pred CChHHHHHHHHHHhh-cCCceEEE---------EECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSC---------KIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsv---------KiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
.+|+.+.++.+.... .+-+.+++ +++ +|.. .++.++++.+++.|++.|.+|++++.+. .. +.+
T Consensus 109 ~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~--~~-g~~ 184 (252)
T 1ka9_F 109 RRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVA-GGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT--KE-GYD 184 (252)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTT--CS-CCC
T ss_pred hCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEEC-CCccccCCcHHHHHHHHHHcCCCEEEEecccCCCC--cC-CCC
Confidence 367888888887742 22233443 332 4532 3578899999999999999998877643 22 458
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
|+.++++++.+++||+++|||++++|+.++++ +||||||+|++++.+||.+.+..
T Consensus 185 ~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~-~Gadgv~vgsal~~~~~~~~~~~ 239 (252)
T 1ka9_F 185 LRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPKLK 239 (252)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-CCCHHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999886 99999999999999999888754
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-14 Score=118.78 Aligned_cols=117 Identities=16% Similarity=0.224 Sum_probs=91.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEE-----EECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSC-----KIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsv-----KiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
.+|+++.++ +.+...+-+.+++ ++ -||.. ..+.++++.+++.|++.|.+|++++.+. +. +++|+.++
T Consensus 107 ~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~-~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~--~~-g~~~~~i~ 181 (241)
T 1qo2_A 107 EDPSFLKSL-REIDVEPVFSLDTRGGRVAF-KGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--LQ-EHDFSLTK 181 (241)
T ss_dssp HCTTHHHHH-HTTTCEEEEEEEEETTEECC-TTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHH--TC-CCCHHHHH
T ss_pred hChHHHHHH-HHcCCcEEEEEEecCCEEEE-CCceecCCCCHHHHHHHHHhCCCCEEEEEeeccccc--CC-cCCHHHHH
Confidence 367777777 6654322233444 23 24532 2577899999999999999999987653 22 35899999
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhh----C-CcEEEEehhhhhCCccccch
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEET----G-CEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~----g-adgVmigR~~l~nP~lf~~~ 123 (230)
++++.+++||+++|||.+++|+.++++.+ | |||||+|++++..+.-+.++
T Consensus 182 ~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~ 236 (241)
T 1qo2_A 182 KIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_dssp HHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred HHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHH
Confidence 99999999999999999999999999865 9 99999999999998876654
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=9.3e-14 Score=125.63 Aligned_cols=104 Identities=17% Similarity=0.204 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
||++..+.++.+++.+++||.+|.-. +.+.++.+.++|+|+|+|+++...+. +.+++.|+.+.++++.+ +
T Consensus 236 d~~~~~~~i~~lr~~~~~PvivKgv~------~~e~A~~a~~aGad~I~vs~~ggr~~--~~g~~~~~~l~~v~~av~~~ 307 (392)
T 2nzl_A 236 DPSISWEDIKWLRRLTSLPIVAKGIL------RGDDAREAVKHGLNGILVSNHGARQL--DGVPATIDVLPEIVEAVEGK 307 (392)
T ss_dssp CTTCCHHHHHHHC--CCSCEEEEEEC------CHHHHHHHHHTTCCEEEECCGGGTSS--TTCCCHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHhhCCCEEEEecC------CHHHHHHHHHcCCCEEEeCCCCCCcC--CCCcChHHHHHHHHHHcCCC
Confidence 66677888999999999999999531 25668999999999999976554332 34678899999999887 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+|||++|||+|.+|+.++|. .|||+||+||+++.
T Consensus 308 ipVia~GGI~~g~Dv~kala-lGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 308 VEVFLDGGVRKGTDVLKALA-LGAKAVFVGRPIVW 341 (392)
T ss_dssp SEEEECSSCCSHHHHHHHHH-TTCSEEEECHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHH-hCCCeeEECHHHHH
Confidence 99999999999999999998 89999999996654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=119.79 Aligned_cols=105 Identities=25% Similarity=0.217 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcCCceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEE--ecCC--------CCCc-----C-CCCCcccH
Q 026945 7 VKSLVEKLALNLNVPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRT--------RDEK-----D-GKKFRADW 69 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt--------~~~~-----~-~~~~~~~~ 69 (230)
+.++++++++ +++||.+| +..+.+ .+.++.++++|+|+|+| |++| +.+. + ...+.+.+
T Consensus 170 ~~~~i~~vr~-~~~Pv~vK~v~~g~~----~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~ 244 (332)
T 1vcf_A 170 LVERLAELLP-LPFPVMVKEVGHGLS----REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTA 244 (332)
T ss_dssp HHHHHHHHCS-CSSCEEEECSSSCCC----HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHH
T ss_pred HHHHHHHHHc-CCCCEEEEecCCCCC----HHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHH
Confidence 5788999999 99999999 544443 34578999999999999 6664 2210 0 12356789
Q ss_pred HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 70 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+.++++.+ ++|||++|||+|++|+.++|. .|||+||+||+++..+
T Consensus 245 ~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~-~GAd~V~igr~~l~~~ 292 (332)
T 1vcf_A 245 RAILEVREVLPHLPLVASGGVYTGTDGAKALA-LGADLLAVARPLLRPA 292 (332)
T ss_dssp HHHHHHHHHCSSSCEEEESSCCSHHHHHHHHH-HTCSEEEECGGGHHHH
T ss_pred HHHHHHHHhcCCCeEEEECCCCCHHHHHHHHH-hCCChHhhhHHHHHHH
Confidence 9999999998 799999999999999999998 7999999999877654
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.5e-13 Score=119.86 Aligned_cols=106 Identities=18% Similarity=0.196 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCceEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCC-----cC-------CCCCcccHHH
Q 026945 7 VKSLVEKLALNLNVPVSCKI-RVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDE-----KD-------GKKFRADWNA 71 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKi-R~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~-----~~-------~~~~~~~~~~ 71 (230)
+.++++++++.+++||.+|+ ..+.+ .+.++.+.++|+|+|++ ||+|... +. ...+.+.++.
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~----~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~ 241 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAAS 241 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCC----HHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHH
Confidence 67899999988899999998 44444 46689999999999999 7765210 10 1335678899
Q ss_pred HHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 72 IKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 72 i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.++++.+ ++|||++|||+|++|+.+++. .|||+||+||+++..+
T Consensus 242 l~~v~~~~~~ipvia~GGI~~~~d~~k~l~-~GAd~V~iG~~~l~~~ 287 (349)
T 1p0k_A 242 LAEIRSEFPASTMIASGGLQDALDVAKAIA-LGASCTGMAGHFLKAL 287 (349)
T ss_dssp HHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHHHH
T ss_pred HHHHHHhcCCCeEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHHHH
Confidence 99999887 899999999999999999997 7999999999877654
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-13 Score=126.14 Aligned_cols=142 Identities=18% Similarity=0.211 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 79 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-- 79 (230)
.+|.+..++++.+++.+++||.+|.-. + .+.++.++++|+|+|+|++....+. ..+++.|+.+.++++.+
T Consensus 326 ~d~~~~~~~i~~lr~~~~~PvivKgv~--~----~e~A~~a~~aGad~I~vs~hgG~~~--d~~~~~~~~l~~v~~~v~~ 397 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKKTKLPIVIKGVQ--R----TEDVIKAAEIGVSGVVLSNHGGRQL--DFSRAPIEVLAETMPILEQ 397 (511)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEEEEC--S----HHHHHHHHHTTCSEEEECCTTTTSS--TTCCCHHHHHHHHHHHHHT
T ss_pred cChHhHHHHHHHHHHHhCCcEEEEeCC--C----HHHHHHHHHcCCCEEEEcCCCCccC--CCCCchHHHHHHHHHHHHh
Confidence 366777889999999999999999421 1 5678999999999999955433332 23466799999998877
Q ss_pred -----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH
Q 026945 80 -----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC 154 (230)
Q Consensus 80 -----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~ 154 (230)
++|||++|||++.+|+.++|. .|||+|||||+++ +.....+ + ......++.+.++++..
T Consensus 398 ~~~~~~ipVia~GGI~~g~Dv~kaLa-lGAdaV~iGr~~l-----~~~~~~G------~----~gv~~~l~~l~~el~~~ 461 (511)
T 1kbi_A 398 RNLKDKLEVFVDGGVRRGTDVLKALC-LGAKGVGLGRPFL-----YANSCYG------R----NGVEKAIEILRDEIEMS 461 (511)
T ss_dssp TTCBTTBEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHH-----HHHHHHH------H----HHHHHHHHHHHHHHHHH
T ss_pred hccCCCcEEEEECCCCCHHHHHHHHH-cCCCEEEECHHHH-----HHHHhcC------h----HHHHHHHHHHHHHHHHH
Confidence 799999999999999999998 8999999999655 3322111 1 12334566777777743
Q ss_pred -hhCCC-hhHHHHHH
Q 026945 155 -EKYPV-PWRMIRSH 167 (230)
Q Consensus 155 -~~~~~-~~~~~r~h 167 (230)
..+|. .+..++++
T Consensus 462 m~~~G~~~i~el~~~ 476 (511)
T 1kbi_A 462 MRLLGVTSIAELKPD 476 (511)
T ss_dssp HHHHTCCBGGGCCGG
T ss_pred HHHhCCCcHHHHhHH
Confidence 33342 24445444
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=113.45 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=93.5
Q ss_pred CChHHHHHHHHHHhh-cCCceEEE---------EECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 2 DNLPLVKSLVEKLAL-NLNVPVSC---------KIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~-~~~~pvsv---------KiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
.+|+.+.++++.+.. .+.+.+++ +++ +|.. .+..++++.+++.|++.|.+|++++.+. .. +.+
T Consensus 108 ~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~--~~-g~~ 183 (253)
T 1thf_D 108 ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTY-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT--KS-GYD 183 (253)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTS--CS-CCC
T ss_pred hChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEEC-CCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCC--CC-CCC
Confidence 467888888888743 22234444 342 4432 2578899999999999999999887643 22 458
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
|+.++++++.+++||+++|||++++|+.++++ +|||+||+|++++.+|+.+.+..
T Consensus 184 ~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~-~Gadgv~vGsal~~~~~~~~~~~ 238 (253)
T 1thf_D 184 TEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDVRELK 238 (253)
T ss_dssp HHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCChHHHHHHHHHcCCCCHHHHH
Confidence 99999999999999999999999999999996 99999999999999998777543
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.5e-13 Score=115.10 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=85.5
Q ss_pred EEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH
Q 026945 22 VSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 99 (230)
Q Consensus 22 vsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l 99 (230)
..||+|.++.. .+..++++.+++.|+++|+++..+.... ..+.+++.++++++.+++||+++|||+|++++.+++
T Consensus 22 ~~v~~~~~~~~~~~~~~~~a~~~~~~G~~~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l 98 (247)
T 3tdn_A 22 FMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT---KSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF 98 (247)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTC---SSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHH
T ss_pred EEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEecCcccC---CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 56788855432 3689999999999999999999876532 125689999999999999999999999999999999
Q ss_pred HhhCCcEEEEehhhhhCCccccchhh
Q 026945 100 EETGCEGVLSAESLLENPALFAGFRT 125 (230)
Q Consensus 100 ~~~gadgVmigR~~l~nP~lf~~~~~ 125 (230)
+ .|||+|++||+++.||+++.++..
T Consensus 99 ~-~Gad~V~ig~~~l~dp~~~~~~~~ 123 (247)
T 3tdn_A 99 L-RGADKVSINTAAVENPSLITQIAQ 123 (247)
T ss_dssp H-TTCSEECCSHHHHHCTHHHHHHHH
T ss_pred H-cCCCeeehhhHHhhChHHHHHHHH
Confidence 6 799999999999999998877653
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-13 Score=114.81 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHh---hcC--CceE-------EEEECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc
Q 026945 3 NLPLVKSLVEKLA---LNL--NVPV-------SCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 67 (230)
Q Consensus 3 ~p~~~~eiv~~v~---~~~--~~pv-------svKiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~ 67 (230)
+|+.+.++++... +.+ .+++ .|+++ +|+. .+..++++.+++.|++.|.+|++++.+. . .+.
T Consensus 112 ~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~-g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~--~-~g~ 187 (266)
T 2w6r_A 112 DMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTH-SGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT--K-SGY 187 (266)
T ss_dssp -CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEET-TTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTT--C-SCC
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEEC-CCceecchhHHHHHHHHHHcCCCEEEEEeecCCCC--c-CCC
Confidence 6777777766654 121 2222 34443 4431 2467899999999999999999887643 2 246
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+|+.++++++.+++||+++|||++++|+.++++ +|||||++|++++.+|+.+.++.
T Consensus 188 ~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~~ 243 (266)
T 2w6r_A 188 DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREIDMRELK 243 (266)
T ss_dssp CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESTTTC----------
T ss_pred CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHH-cCCHHHHccHHHHcCCCCHHHHH
Confidence 899999999999999999999999999999986 89999999999999999988765
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=118.61 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=92.7
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEE----------ecCCCC-------CcCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAV----------HGRTRD-------EKDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~v----------h~rt~~-------~~~~~ 63 (230)
.+|+.+.++++++++.+..|+.+|++..++.......+..+.+.+ ++.++. ..++.. ...++
T Consensus 176 ~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGl 255 (354)
T 3tjx_A 176 YDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGL 255 (354)
T ss_dssp TSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEE
T ss_pred cCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhheecccccccccccccccccccCccccccc
Confidence 478999999999999999999999999887655556666666554 343332 222221 11345
Q ss_pred CCcccHHH----HHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh-hCCccccchhh
Q 026945 64 KFRADWNA----IKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL-ENPALFAGFRT 125 (230)
Q Consensus 64 ~~~~~~~~----i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l-~nP~lf~~~~~ 125 (230)
+|++.|+. ++++.+.+ ++|||++|||.|.+|+.+++. +|||+||+|++++ .+|++|.++..
T Consensus 256 SG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~-aGAs~Vqv~Ta~~y~GP~~~~~I~~ 322 (354)
T 3tjx_A 256 GGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFERLTS 322 (354)
T ss_dssp EGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHH-cCCCEEEEChhhhhcCchHHHHHHH
Confidence 67777764 45555554 699999999999999999996 8999999999975 68999998753
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=110.18 Aligned_cols=110 Identities=16% Similarity=0.262 Sum_probs=90.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEE---CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKI---RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKi---R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.+.+.++++++.++ |+.+|+ +.+++.++..++++.++++|+|+| +.+| +. +.++++|+.++.+++.+
T Consensus 100 ~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I--~tst--g~--~~gga~~~~i~~v~~~v 172 (225)
T 1mzh_A 100 KYDFVVEELKEIFRETP-SAVHKVIVETPYLNEEEIKKAVEICIEAGADFI--KTST--GF--APRGTTLEEVRLIKSSA 172 (225)
T ss_dssp CHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEE--ECCC--SC--SSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEE--EECC--CC--CCCCCCHHHHHHHHHHh
Confidence 56778888999999988 999999 777887889999999999999999 3333 21 24578999999999987
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++||+++|||+|++|+.++++ +|||.|.++++ ++++++++
T Consensus 173 ~~~ipVia~GGI~t~~da~~~l~-aGA~~iG~s~~----~~i~~~~~ 214 (225)
T 1mzh_A 173 KGRIKVKASGGIRDLETAISMIE-AGADRIGTSSG----ISIAEEFL 214 (225)
T ss_dssp TTSSEEEEESSCCSHHHHHHHHH-TTCSEEEESCH----HHHHHHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHH-hCchHHHHccH----HHHHHHHH
Confidence 699999999999999999997 89997766664 35565544
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-13 Score=118.04 Aligned_cols=47 Identities=26% Similarity=0.468 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCccE--EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 70 NAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 70 ~~i~~i~~~~~ipv--i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.++++++..++|| +++|||.|++|+.++++ .||||||+||+++..+
T Consensus 230 ell~~i~~~~~IPVV~VAeGGI~Tpeda~~~l~-~GaDgV~VGsaI~~a~ 278 (330)
T 2yzr_A 230 EVLLEVKKLGRLPVVNFAAGGVATPADAALMMQ-LGSDGVFVGSGIFKSE 278 (330)
T ss_dssp HHHHHHHHHTSCSSEEEECSCCCSHHHHHHHHH-TTCSCEEESHHHHTSS
T ss_pred HHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHH-cCcCEEeeHHHHhcCC
Confidence 88999999889998 69999999999999998 6999999999999543
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=120.63 Aligned_cols=139 Identities=17% Similarity=0.092 Sum_probs=105.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|++..++++.+++.+++||.+|.- .+.+.++.+.++|+|.|.| |+++ +. ..++++|+.+.++++.++
T Consensus 209 ~p~~~~~~i~~i~~~~~~Pv~vkgv------~t~e~a~~a~~aGad~I~vs~~gg~--~~--d~~~~~~~~l~~v~~~~~ 278 (380)
T 1p4c_A 209 DASFNWEALRWLRDLWPHKLLVKGL------LSAEDADRCIAEGADGVILSNHGGR--QL--DCAISPMEVLAQSVAKTG 278 (380)
T ss_dssp CTTCCHHHHHHHHHHCCSEEEEEEE------CCHHHHHHHHHTTCSEEEECCGGGT--SC--TTCCCGGGTHHHHHHHHC
T ss_pred CccccHHHHHHHHHhcCCCEEEEec------CcHHHHHHHHHcCCCEEEEcCCCCC--cC--CCCcCHHHHHHHHHHHcC
Confidence 6777889999999999999999952 2356799999999999999 6654 22 234678999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHH-hhCCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLC-EKYPV 159 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~-~~~~~ 159 (230)
+|||++|||++.+|+.+++. .|||+||+||+++.... .. |. ....+.++.+.++++.. ..+|.
T Consensus 279 ~pVia~GGI~~~~dv~kal~-~GAdaV~iGr~~l~~~~-----~~------g~----~~v~~~~~~l~~el~~~m~~~G~ 342 (380)
T 1p4c_A 279 KPVLIDSGFRRGSDIVKALA-LGAEAVLLGRATLYGLA-----AR------GE----TGVDEVLTLLKADIDRTLAQIGC 342 (380)
T ss_dssp SCEEECSSCCSHHHHHHHHH-TTCSCEEESHHHHHHHH-----HH------HH----HHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCHHHHHHHHH-hCCcHhhehHHHHHHHH-----hc------CH----HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999997 89999999999985421 11 11 12345666777777643 33443
Q ss_pred -hhHHHHHH
Q 026945 160 -PWRMIRSH 167 (230)
Q Consensus 160 -~~~~~r~h 167 (230)
.+..++++
T Consensus 343 ~~i~el~~~ 351 (380)
T 1p4c_A 343 PDITSLSPD 351 (380)
T ss_dssp CBGGGCCGG
T ss_pred CCHHHhccC
Confidence 35566665
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.3e-13 Score=118.22 Aligned_cols=105 Identities=25% Similarity=0.272 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+|.+..+.++.+++.+++||.+|.... .+.++.+.++|+|.|.|++....+. ..++++++.+.++++.+ +
T Consensus 209 ~~~~~~~~i~~l~~~~~~pv~vK~~~~------~e~a~~a~~~Gad~I~vs~~ggr~~--~~~~~~~~~l~~v~~~~~~~ 280 (370)
T 1gox_A 209 DRSLSWKDVAWLQTITSLPILVKGVIT------AEDARLAVQHGAAGIIVSNHGARQL--DYVPATIMALEEVVKAAQGR 280 (370)
T ss_dssp CTTCCHHHHHHHHHHCCSCEEEECCCS------HHHHHHHHHTTCSEEEECCGGGTSS--TTCCCHHHHHHHHHHHTTTS
T ss_pred CccchHHHHHHHHHHhCCCEEEEecCC------HHHHHHHHHcCCCEEEECCCCCccC--CCcccHHHHHHHHHHHhCCC
Confidence 556666789999999999999999842 3668999999999999943211122 23467899999999988 7
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||+++|||++.+|+.+++. .|||+||+||+++..
T Consensus 281 ipvia~GGI~~~~D~~k~l~-~GAdaV~iGr~~l~~ 315 (370)
T 1gox_A 281 IPVFLDGGVRRGTDVFKALA-LGAAGVFIGRPVVFS 315 (370)
T ss_dssp SCEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHH-cCCCEEeecHHHHHH
Confidence 99999999999999999998 899999999977653
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-12 Score=109.14 Aligned_cols=52 Identities=25% Similarity=0.489 Sum_probs=47.0
Q ss_pred cccHHHHHHHHhhCCccE--EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 66 RADWNAIKAVKNALRIPV--LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipv--i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.++|+.++++++.+++|| |+||||.|++|+.+++ ++||||||+|||++..|+
T Consensus 184 ~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~l-e~GaDGVmVGrAI~~s~D 237 (291)
T 3o07_A 184 RVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLM-QLGCDGVFVGSGIFKSSN 237 (291)
T ss_dssp TSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHH-HTTCSCEEECGGGGGSSC
T ss_pred CCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHH-HhCCCEEEEchHHhCCCC
Confidence 468999999999999998 5699999999999999 489999999999998554
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-12 Score=106.07 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=92.2
Q ss_pred CChHHHHHHHHHHhhc-C----Cce-----EEEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 2 DNLPLVKSLVEKLALN-L----NVP-----VSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~-~----~~p-----vsvKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
.+|+.+.++.+..... + +++ +.|++|.++. ..+..++++.+.+.|+++|.+|+++.... ....++
T Consensus 111 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~---~~~~~~ 187 (253)
T 1h5y_A 111 RNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT---GLGYDV 187 (253)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT---CSCCCH
T ss_pred hCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCC---cCcCCH
Confidence 3677777777775421 1 222 5778887542 13567889999999999999999887542 124589
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+.++++++.+++||+++|||++++++.++++ +|||+||+|++++.+++.+.++
T Consensus 188 ~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~-~Ga~~v~vgsal~~~~~~~~~~ 240 (253)
T 1h5y_A 188 ELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFRVLSIAQV 240 (253)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHHH
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH-cCCcHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999999985 8999999999999888655543
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=105.08 Aligned_cols=105 Identities=14% Similarity=0.183 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.+.++++.+++. ++++.+.+. +.+.++.++++|+++|.+ |++|... ....++|+.++++++. +
T Consensus 114 ~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Gad~Ig~~~~g~t~~~---~~~~~~~~li~~l~~~-~ 181 (229)
T 3q58_A 114 RPVDIDSLLTRIRLH-GLLAMADCS-------TVNEGISCHQKGIEFIGTTLSGYTGPI---TPVEPDLAMVTQLSHA-G 181 (229)
T ss_dssp CSSCHHHHHHHHHHT-TCEEEEECS-------SHHHHHHHHHTTCSEEECTTTTSSSSC---CCSSCCHHHHHHHHTT-T
T ss_pred ChHHHHHHHHHHHHC-CCEEEEecC-------CHHHHHHHHhCCCCEEEecCccCCCCC---cCCCCCHHHHHHHHHc-C
Confidence 677888888888764 788887664 356688899999999964 5655543 2346799999999988 9
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+|||++|||.|++|+.++++ .|||+|++|.++ .+||.+.
T Consensus 182 ipvIA~GGI~t~~d~~~~~~-~GadgV~VGsai-~~p~~~~ 220 (229)
T 3q58_A 182 CRVIAEGRYNTPALAANAIE-HGAWAVTVGSAI-TRIEHIC 220 (229)
T ss_dssp CCEEEESSCCSHHHHHHHHH-TTCSEEEECHHH-HCHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHH-cCCCEEEEchHh-cChHHHH
Confidence 99999999999999999997 799999999655 5687654
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-11 Score=111.24 Aligned_cols=104 Identities=20% Similarity=0.209 Sum_probs=80.7
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec--CC--------CCCc------------CCCC
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG--RT--------RDEK------------DGKK 64 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~--rt--------~~~~------------~~~~ 64 (230)
..++++.+++.+++||.+|. +|+.. +.+.++.+.++|+++|+|++ +| +... .++
T Consensus 175 ~~~~i~~i~~~~~vPVivK~-vG~g~--s~~~A~~l~~aGad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~- 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKE-SGNGI--SMETAKLLYSYGIKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLDW- 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEEC-SSSCC--CHHHHHHHHHTTCCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHcCCCEEEEe-CCCCC--CHHHHHHHHhCCCCEEEEeCCCCCcccchhhhhcccccccchhhccccccc-
Confidence 67889999999999999997 55432 25679999999999999954 43 1100 000
Q ss_pred CcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 65 FRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.+....+.++++.++ +|||++|||+|+.|+.+++. .|||+||+||+++.
T Consensus 251 g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~-lGA~~v~ig~~~l~ 301 (368)
T 3vkj_A 251 GVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIA-LGADIAGMALPVLK 301 (368)
T ss_dssp SCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHH
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHHH
Confidence 2233467788888884 99999999999999999998 79999999996553
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=106.81 Aligned_cols=97 Identities=12% Similarity=0.253 Sum_probs=83.5
Q ss_pred EEEEECCCCCh------HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHH
Q 026945 22 VSCKIRVFPNL------QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 95 (230)
Q Consensus 22 vsvKiR~g~~~------~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da 95 (230)
..||+|.||.. .++.++++.++++|++.|++|.++..... .+.+++.+++++ .+++||+++|||++.+++
T Consensus 13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~~~~---~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~~~ 88 (241)
T 1qo2_A 13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNAIEN---SGENLPVLEKLS-EFAEHIQIGGGIRSLDYA 88 (241)
T ss_dssp EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHHHHC---CCTTHHHHHHGG-GGGGGEEEESSCCSHHHH
T ss_pred EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEecccccccC---CchhHHHHHHHH-hcCCcEEEECCCCCHHHH
Confidence 46888888732 46899999999999999999987654321 246899999999 889999999999999999
Q ss_pred HHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 96 QKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 96 ~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.++++ .|||+|++|++++.||+++.++
T Consensus 89 ~~~~~-~Gad~V~lg~~~l~~p~~~~~~ 115 (241)
T 1qo2_A 89 EKLRK-LGYRRQIVSSKVLEDPSFLKSL 115 (241)
T ss_dssp HHHHH-TTCCEEEECHHHHHCTTHHHHH
T ss_pred HHHHH-CCCCEEEECchHhhChHHHHHH
Confidence 99997 8999999999999999998877
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=102.96 Aligned_cols=105 Identities=13% Similarity=0.189 Sum_probs=83.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.+.++++.+++. ++++.+.+. +.+.++.++++|+++|.+ +++|...+ ...++|+.++++++. +
T Consensus 114 ~p~~l~~~i~~~~~~-g~~v~~~v~-------t~eea~~a~~~Gad~Ig~~~~g~t~~~~---~~~~~~~~i~~l~~~-~ 181 (232)
T 3igs_A 114 RPVAVEALLARIHHH-HLLTMADCS-------SVDDGLACQRLGADIIGTTMSGYTTPDT---PEEPDLPLVKALHDA-G 181 (232)
T ss_dssp CSSCHHHHHHHHHHT-TCEEEEECC-------SHHHHHHHHHTTCSEEECTTTTSSSSSC---CSSCCHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHC-CCEEEEeCC-------CHHHHHHHHhCCCCEEEEcCccCCCCCC---CCCCCHHHHHHHHhc-C
Confidence 677888888888764 778877664 346688899999999964 55554432 235699999999988 9
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+||+++|||.|++|+.++++ .|||+|++|.+++ +|+...
T Consensus 182 ipvIA~GGI~t~~d~~~~~~-~GadgV~VGsal~-~p~~~~ 220 (232)
T 3igs_A 182 CRVIAEGRYNSPALAAEAIR-YGAWAVTVGSAIT-RLEHIC 220 (232)
T ss_dssp CCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHH-CHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCEEEEehHhc-CHHHHH
Confidence 99999999999999999997 7999999996655 676543
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-11 Score=107.46 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=83.1
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEE-ECCCCChHHHHHHHHHHHHcCCCEEEE--ecCCCC-Cc-CCCCCcc--cHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCK-IRVFPNLQDTIKYAKMLEDAGCSLLAV--HGRTRD-EK-DGKKFRA--DWNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvK-iR~g~~~~~~~~~a~~l~~~G~~~i~v--h~rt~~-~~-~~~~~~~--~~~~i~~ 74 (230)
++....++++.+++.++ .||... +. +.+.++.+.++|+|+|.+ |+++.. +. ....+.+ .++.+.+
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~-------s~e~A~~a~~aGad~Ivvs~hgG~~~~~~~~~~~g~~g~~~~~l~~ 204 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVG-------TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRW 204 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEEC-------SHHHHHHHHHHTCSEEEECSSCSTTCHHHHHHSCSSTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcC-------CHHHHHHHHHcCCCEEEEecCCCceeecccccCcCCchhHHHHHHH
Confidence 56788899999999885 566543 21 247899999999999999 554311 00 0011223 6889999
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+++.+++|||++|||+++.|+.+++. .|||+||+||+++.-+
T Consensus 205 v~~~~~ipVIa~GGI~~g~Dv~kala-lGAdaV~iGr~~l~t~ 246 (336)
T 1ypf_A 205 CAKAASKPIIADGGIRTNGDVAKSIR-FGATMVMIGSLFAGHE 246 (336)
T ss_dssp HHHTCSSCEEEESCCCSTHHHHHHHH-TTCSEEEESGGGTTCT
T ss_pred HHHHcCCcEEEeCCCCCHHHHHHHHH-cCCCEEEeChhhhccc
Confidence 99999999999999999999999997 7999999999999643
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.6e-11 Score=106.26 Aligned_cols=100 Identities=19% Similarity=0.263 Sum_probs=82.3
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++++.+++ .++||.+|+. +.+.++.+++.|+|+|.++++... +.. ...+|+.+.++++.+++||+++|
T Consensus 101 ~~i~~l~~-~g~~v~~~v~-------~~~~a~~~~~~GaD~i~v~g~~~G---G~~g~~~~~~ll~~i~~~~~iPViaaG 169 (332)
T 2z6i_A 101 KYMERFHE-AGIIVIPVVP-------SVALAKRMEKIGADAVIAEGMEAG---GHIGKLTTMTLVRQVATAISIPVIAAG 169 (332)
T ss_dssp GTHHHHHH-TTCEEEEEES-------SHHHHHHHHHTTCSCEEEECTTSS---EECCSSCHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHH-cCCeEEEEeC-------CHHHHHHHHHcCCCEEEEECCCCC---CCCCCccHHHHHHHHHHhcCCCEEEEC
Confidence 45566665 3789998873 345688899999999999987432 122 25689999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
||.+++++.+++. .|||+|++||+++.+|...
T Consensus 170 GI~~~~~~~~al~-~GAdgV~vGs~~l~~~e~~ 201 (332)
T 2z6i_A 170 GIADGEGAAAGFM-LGAEAVQVGTRFVVAKESN 201 (332)
T ss_dssp SCCSHHHHHHHHH-TTCSEEEECHHHHTBTTCC
T ss_pred CCCCHHHHHHHHH-cCCCEEEecHHHhcCcccc
Confidence 9999999999998 7999999999999999754
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-11 Score=105.75 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----CC--------CCCcccHHH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----DG--------KKFRADWNA 71 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----~~--------~~~~~~~~~ 71 (230)
+-..+.|+.+++.+++||.+|. +++. .+.+.++.+.++|+|+|+|+++...+. .. ..+.+....
T Consensus 192 ~~~~~~I~~l~~~~~~PVivK~-vg~g--~s~e~A~~l~~aGad~I~V~g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~ 268 (365)
T 3sr7_A 192 RSWKKHLSDYAKKLQLPFILKE-VGFG--MDVKTIQTAIDLGVKTVDISGRGGTSFAYIENRRGGNRSYLNQWGQTTAQV 268 (365)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEE-CSSC--CCHHHHHHHHHHTCCEEECCCBC--------------CGGGTTCSCBHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEE-CCCC--CCHHHHHHHHHcCCCEEEEeCCCCcccchhhccccccccccccccccHHHH
Confidence 3466889999999999999995 4432 234678999999999999976533210 00 012233456
Q ss_pred HHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 72 IKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 72 i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+..++... ++|||++|||+|..|+.++|. .|||+||+||+++.
T Consensus 269 L~~v~~~~~~ipvia~GGI~~g~Dv~KaLa-lGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 269 LLNAQPLMDKVEILASGGIRHPLDIIKALV-LGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHHGGGTTTSEEEECSSCCSHHHHHHHHH-HTCSEEEESHHHHH
T ss_pred HHHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEECHHHHH
Confidence 66664432 699999999999999999998 89999999996654
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.3e-11 Score=107.83 Aligned_cols=110 Identities=23% Similarity=0.212 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i 75 (230)
+|+.+.++++.+++.+ ++||.++.-. +.+.++.+.++|+|+|.+.. +++.. .+ .+.++++.+..+
T Consensus 177 ~~~~~~e~i~~ir~~~~~~pviv~~v~------~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~-~~-~g~p~~~~l~~v 248 (404)
T 1eep_A 177 HSTRIIELIKKIKTKYPNLDLIAGNIV------TKEAALDLISVGADCLKVGIGPGSICTTRIV-AG-VGVPQITAICDV 248 (404)
T ss_dssp SSHHHHHHHHHHHHHCTTCEEEEEEEC------SHHHHHHHHTTTCSEEEECSSCSTTSHHHHH-HC-CCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCeEEEcCCC------cHHHHHHHHhcCCCEEEECCCCCcCcCcccc-CC-CCcchHHHHHHH
Confidence 5778899999999988 8999984221 25778999999999999922 11111 11 234467777777
Q ss_pred Hh---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 76 KN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 76 ~~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++ ..++|||++|||++++|+.+++. .|||+|++||+++..|+...
T Consensus 249 ~~~~~~~~ipVia~GGI~~~~d~~~ala-~GAd~V~iG~~~l~~~e~~~ 296 (404)
T 1eep_A 249 YEACNNTNICIIADGGIRFSGDVVKAIA-AGADSVMIGNLFAGTKESPS 296 (404)
T ss_dssp HHHHTTSSCEEEEESCCCSHHHHHHHHH-HTCSEEEECHHHHTBTTSSS
T ss_pred HHHHhhcCceEEEECCCCCHHHHHHHHH-cCCCHHhhCHHHhcCCCCCc
Confidence 66 56899999999999999999998 79999999999999988754
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.2e-10 Score=96.73 Aligned_cols=107 Identities=19% Similarity=0.290 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+.+.++++.+++.+ +.++.+.+. + .+.+..+++.|+++|.+. +.|...........+++.++++++.+++
T Consensus 104 ~~~~~~i~~~~~~~~~~~v~~~~~---t----~~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~i 176 (223)
T 1y0e_A 104 ETLDELVSYIRTHAPNVEIMADIA---T----VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDA 176 (223)
T ss_dssp SCHHHHHHHHHHHCTTSEEEEECS---S----HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCS
T ss_pred cCHHHHHHHHHHhCCCceEEecCC---C----HHHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCC
Confidence 35678888888765 677876554 2 233567889999999874 3443222111135578999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
||+++|||+|++++.++++ .|||+|++||+++. |+..
T Consensus 177 pvia~GGI~~~~~~~~~~~-~Gad~v~vG~al~~-p~~~ 213 (223)
T 1y0e_A 177 KVIAEGNVITPDMYKRVMD-LGVHCSVVGGAITR-PKEI 213 (223)
T ss_dssp EEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHC-HHHH
T ss_pred CEEEecCCCCHHHHHHHHH-cCCCEEEEChHHcC-cHHH
Confidence 9999999999999999997 79999999998665 6643
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=103.20 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCC---------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFP---------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~---------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
-.++.||+++|+++++ -+|.||+.... +......+++.+.+.|++++.++....... +..........
T Consensus 202 ~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~a~ 279 (358)
T 4a3u_A 202 IRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAVDGT--FGKTDQPKLSP 279 (358)
T ss_dssp THHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBTTCS--SSBCSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchHHHHHHHHHhhhccCccccccccccccCc--ccccccHHHHH
Confidence 3588999999999873 45788877521 223467788999999999999987654432 11122334567
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+++.+..||++ |++.+++.+++++++..||.|++||+++.||+|..+++.+
T Consensus 280 ~ik~~~~~~v~~-~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~~g 331 (358)
T 4a3u_A 280 EIRKVFKPPLVL-NQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEK 331 (358)
T ss_dssp HHHHHCCSCEEE-ESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHhcCCcEEE-eCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHHhC
Confidence 788888888876 5577999999999977799999999999999999998765
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.6e-10 Score=106.30 Aligned_cols=113 Identities=21% Similarity=0.225 Sum_probs=88.1
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe---cC---CCCCc-CCCCCcccHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH---GR---TRDEK-DGKKFRADWNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh---~r---t~~~~-~~~~~~~~~~~i~~ 74 (230)
+++...++++.+++.+ ++||.+|-= .+.+.++.+.++|+|+|.|. |. ++... .+.+....+..+.+
T Consensus 279 ~~~~~~~~i~~i~~~~~~~pvi~~~v------~t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~ 352 (514)
T 1jcn_A 279 NSVYQIAMVHYIKQKYPHLQVIGGNV------VTAAQAKNLIDAGVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAE 352 (514)
T ss_dssp CSHHHHHHHHHHHHHCTTCEEEEEEE------CSHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCceEeccc------chHHHHHHHHHcCCCEEEECCCCCcccccccccCCCccchhHHHHHHH
Confidence 4567789999999988 899988621 23567899999999999882 11 11110 01112346788889
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+++.+++|||++|||+++.|+.+++. .|||+||+||+++.+|+....
T Consensus 353 ~~~~~~ipVia~GGI~~~~di~kala-~GAd~V~iG~~~l~~~e~~~~ 399 (514)
T 1jcn_A 353 YARRFGVPIIADGGIQTVGHVVKALA-LGASTVMMGSLLAATTEAPGE 399 (514)
T ss_dssp HHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTSTTSSCC
T ss_pred HHhhCCCCEEEECCCCCHHHHHHHHH-cCCCeeeECHHHHcCCcCCcc
Confidence 99989999999999999999999998 799999999999999987654
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=5.7e-10 Score=98.22 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=81.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+++. ++||.+++. +.+.++.+.+.|+|+|.+++++.....+.....+|+.+.++++.+++||+++||
T Consensus 109 ~~~~~l~~~-gi~vi~~v~-------t~~~a~~~~~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGG 180 (328)
T 2gjl_A 109 EHIAEFRRH-GVKVIHKCT-------AVRHALKAERLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGG 180 (328)
T ss_dssp HHHHHHHHT-TCEEEEEES-------SHHHHHHHHHTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESS
T ss_pred HHHHHHHHc-CCCEEeeCC-------CHHHHHHHHHcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECC
Confidence 456666654 788887663 235577888999999999987653221211246899999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|.+++++.+++. .|||+|++||+++..|.
T Consensus 181 I~~~~~v~~al~-~GAdgV~vGs~~~~~~e 209 (328)
T 2gjl_A 181 FADGRGLVAALA-LGADAINMGTRFLATRE 209 (328)
T ss_dssp CCSHHHHHHHHH-HTCSEEEESHHHHTSSS
T ss_pred CCCHHHHHHHHH-cCCCEEEECHHHHcCcc
Confidence 999999999997 79999999999999998
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.12 E-value=9.7e-11 Score=98.96 Aligned_cols=89 Identities=19% Similarity=0.329 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.++++|+++|+++..+.... ..+.+++.++++++.+++||+++|+|++++++.++++ .|||+|++|+.
T Consensus 30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~-~Gad~V~lg~~ 105 (253)
T 1thf_D 30 GDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINTA 105 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESHH
T ss_pred cCHHHHHHHHHHcCCCEEEEECCchhhc---CCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEChH
Confidence 4688999999999999999998765421 1246789999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|+++.++..
T Consensus 106 ~l~~p~~~~~~~~ 118 (253)
T 1thf_D 106 AVENPSLITQIAQ 118 (253)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhChHHHHHHHH
Confidence 9999998876643
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.1e-10 Score=99.57 Aligned_cols=110 Identities=21% Similarity=0.210 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
+|+.+.++++.+++.+++||.++.-. +.+.++.+.++|+|+|.++. .++... ..+.+++..+.+++
T Consensus 168 ~~~~~~e~I~~ik~~~~i~Vi~g~V~------t~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~--g~g~p~~~al~~v~ 239 (400)
T 3ffs_A 168 HSLNIIRTLKEIKSKMNIDVIVGNVV------TEEATKELIENGADGIKVGIGPGSICTTRIVA--GVGVPQITAIEKCS 239 (400)
T ss_dssp SBHHHHHHHHHHHTTCCCEEEEEEEC------SHHHHHHHHHTTCSEEEECC---------CCS--CBCCCHHHHHHHHH
T ss_pred CcccHHHHHHHHHhcCCCeEEEeecC------CHHHHHHHHHcCCCEEEEeCCCCcCccccccc--ccchhHHHHHHHHH
Confidence 46677889999998889999885321 35678899999999999941 222211 12346788888887
Q ss_pred hh---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 77 NA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 77 ~~---~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+. .++|||++|||.+.+|+.+++. .|||+||+|+.++.-+.-..
T Consensus 240 ~~~~~~~IPVIA~GGI~~~~di~kala-lGAd~V~vGt~f~~t~Es~~ 286 (400)
T 3ffs_A 240 SVASKFGIPIIADGGIRYSGDIGKALA-VGASSVMIGSILAGTEESPG 286 (400)
T ss_dssp HHHTTTTCCEEEESCCCSHHHHHHHHT-TTCSEEEECGGGTTBTTSSC
T ss_pred HHHHhcCCCEEecCCCCCHHHHHHHHH-cCCCEEEEChHHhcCCCCCc
Confidence 64 5899999999999999999997 79999999999999776443
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-10 Score=93.55 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEE--EEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLL--AVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i--~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.+.++++.+++.. +.+|.+.++. .+-++.+.++|+|+| ++++.+.... .+ .+.+++.++++++. ++|
T Consensus 119 ~~~~~i~~i~~~~~~~~v~~~~~t-------~~ea~~a~~~Gad~i~~~v~g~~~~~~-~~-~~~~~~~i~~~~~~-~ip 188 (234)
T 1yxy_A 119 DIASFIRQVKEKYPNQLLMADIST-------FDEGLVAHQAGIDFVGTTLSGYTPYSR-QE-AGPDVALIEALCKA-GIA 188 (234)
T ss_dssp CHHHHHHHHHHHCTTCEEEEECSS-------HHHHHHHHHTTCSEEECTTTTSSTTSC-CS-SSCCHHHHHHHHHT-TCC
T ss_pred cHHHHHHHHHHhCCCCeEEEeCCC-------HHHHHHHHHcCCCEEeeeccccCCCCc-CC-CCCCHHHHHHHHhC-CCC
Confidence 5678888888766 6788876652 233788889999999 7888754321 12 25689999999988 999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|+++|||+|++++.++++ .|||+|++|++++. |+
T Consensus 189 via~GGI~s~~~~~~~~~-~Gad~v~vGsal~~-p~ 222 (234)
T 1yxy_A 189 VIAEGKIHSPEEAKKIND-LGVAGIVVGGAITR-PK 222 (234)
T ss_dssp EEEESCCCSHHHHHHHHT-TCCSEEEECHHHHC-HH
T ss_pred EEEECCCCCHHHHHHHHH-CCCCEEEEchHHhC-hH
Confidence 999999999999999997 79999999998876 54
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=97.40 Aligned_cols=104 Identities=18% Similarity=0.247 Sum_probs=79.7
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC----CC-----cccHHHHHHHHhhC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK----KF-----RADWNAIKAVKNAL 79 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~----~~-----~~~~~~i~~i~~~~ 79 (230)
++++.+++ .++||.+++. +.+.++.+++.|+|+|.++++......+. .. ...|+.++++++.+
T Consensus 136 ~~i~~~~~-~g~~v~~~v~-------t~~~a~~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~ 207 (369)
T 3bw2_A 136 EVIARLRR-AGTLTLVTAT-------TPEEARAVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV 207 (369)
T ss_dssp HHHHHHHH-TTCEEEEEES-------SHHHHHHHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHH-CCCeEEEECC-------CHHHHHHHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhc
Confidence 45555555 3678887763 23457888999999999987643111010 00 12399999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++||++.|||.+++++.++++ .|||+|++||+++.+|+...
T Consensus 208 ~iPViaaGGI~~~~~~~~~l~-~GAd~V~vGs~~~~~~e~~~ 248 (369)
T 3bw2_A 208 DIPVVAAGGIMRGGQIAAVLA-AGADAAQLGTAFLATDESGA 248 (369)
T ss_dssp SSCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTSTTCCC
T ss_pred CceEEEECCCCCHHHHHHHHH-cCCCEEEEChHHhCCcccCc
Confidence 999999999999999999997 89999999999999998754
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=96.54 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++.++++.++++|++.|+++..+.... ..+.+++.++++++.+++||+++|+|++.+++.++++ .|||+|++|+.
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~---~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~-~Gad~V~lg~~ 106 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSA 106 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCcccc---CccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHH-cCCCEEEEChH
Confidence 4688999999999999999998765421 2245788999999999999999999999999999997 79999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.+|+++.++..
T Consensus 107 ~l~~p~~~~~~~~ 119 (252)
T 1ka9_F 107 AVRRPELIRELAD 119 (252)
T ss_dssp HHHCTHHHHHHHH
T ss_pred HHhCcHHHHHHHH
Confidence 9999998876643
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-09 Score=95.79 Aligned_cols=100 Identities=18% Similarity=0.264 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 88 (230)
++++.+++ .++||.+++. +.+.++.+.+.|+|+|.++++......+ ...+|+.+.++++.+++||+++||
T Consensus 115 ~~~~~l~~-~g~~v~~~v~-------s~~~a~~a~~~GaD~i~v~g~~~GG~~G--~~~~~~ll~~i~~~~~iPviaaGG 184 (326)
T 3bo9_A 115 KYIRELKE-NGTKVIPVVA-------SDSLARMVERAGADAVIAEGMESGGHIG--EVTTFVLVNKVSRSVNIPVIAAGG 184 (326)
T ss_dssp HHHHHHHH-TTCEEEEEES-------SHHHHHHHHHTTCSCEEEECTTSSEECC--SSCHHHHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHH-cCCcEEEEcC-------CHHHHHHHHHcCCCEEEEECCCCCccCC--CccHHHHHHHHHHHcCCCEEEECC
Confidence 34555554 3788888773 2456778889999999999976432111 246899999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
|.|++++.+++. .|||+|++|++++..|..
T Consensus 185 I~~~~dv~~al~-~GA~gV~vGs~~~~~~e~ 214 (326)
T 3bo9_A 185 IADGRGMAAAFA-LGAEAVQMGTRFVASVES 214 (326)
T ss_dssp CCSHHHHHHHHH-HTCSEEEESHHHHTBSSC
T ss_pred CCCHHHHHHHHH-hCCCEEEechHHHcCccc
Confidence 999999999997 899999999999999875
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.5e-10 Score=99.41 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~ 76 (230)
+++.+.+.++.+++.+++||.++.-. +.+.++.+.++|+|+|.+... ++.. .+ .+.+++..+.+++
T Consensus 129 ~~~~~~~~i~~i~~~~~~~Vivg~v~------t~e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~-~g-~g~p~~~~i~~v~ 200 (361)
T 3khj_A 129 HSLNIIRTLKEIKSKMNIDVIVGNVV------TEEATKELIENGADGIKVGIGPGSICTTRIV-AG-VGVPQITAIEKCS 200 (361)
T ss_dssp SBHHHHHHHHHHHHHCCCEEEEEEEC------SHHHHHHHHHTTCSEEEECSSCCTTCCHHHH-TC-BCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCcEEEccCC------CHHHHHHHHHcCcCEEEEecCCCcCCCcccc-cC-CCCCcHHHHHHHH
Confidence 46777888999988889999985431 346688999999999999421 1110 11 2345677777775
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+ .+++|||++|||.+++|+.+++. .|||+||+|+.++..+....+
T Consensus 201 ~~~~~~~iPVIA~GGI~~~~di~kala-~GAd~V~vGs~~~~t~Esp~~ 248 (361)
T 3khj_A 201 SVASKFGIPIIADGGIRYSGDIGKALA-VGASSVMIGSILAGTEESPGE 248 (361)
T ss_dssp HHHHHHTCCEEEESCCCSHHHHHHHHH-HTCSEEEESTTTTTBTTSSCE
T ss_pred HHHhhcCCeEEEECCCCCHHHHHHHHH-cCCCEEEEChhhhcCCcCCcc
Confidence 4 46899999999999999999997 799999999999998775543
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4.9e-09 Score=89.59 Aligned_cols=105 Identities=13% Similarity=0.235 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcCCceEEEEEC-------CCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 7 VKSLVEKLALNLNVPVSCKIR-------VFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR-------~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+.++++..++ .++|+.+.+- -+.+..+..+.++.++++|+|+|.++. +.+|+.++++++.+
T Consensus 134 ~~~v~~~~~~-~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~-----------~~~~~~l~~i~~~~ 201 (273)
T 2qjg_A 134 LGMIAETCEY-WGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY-----------TGDIDSFRDVVKGC 201 (273)
T ss_dssp HHHHHHHHHH-HTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC-----------CSSHHHHHHHHHHC
T ss_pred HHHHHHHHHH-cCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC-----------CCCHHHHHHHHHhC
Confidence 4444444433 4888888761 123444555667999999999999873 25789999999999
Q ss_pred CccEEEcCCCCC--HHHHHHHHH---hhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRH--MEDVQKCLE---ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s--~~da~~~l~---~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+++|||.+ .+|+.+.+. .+||+||++||+++.+||.+..+
T Consensus 202 ~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~ 250 (273)
T 2qjg_A 202 PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGIT 250 (273)
T ss_dssp SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHH
Confidence 999999999994 888555443 48999999999999999866543
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=100.97 Aligned_cols=109 Identities=25% Similarity=0.225 Sum_probs=84.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++.. ++||.++--. +.+.++.+.++|+|+|.|.. .++.. .+ .+.++++.+.++
T Consensus 253 ~~~~~~~~v~~i~~~~p~~~Vi~g~v~------t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~-~g-~g~p~~~~l~~v 324 (490)
T 4avf_A 253 HSKGVIERVRWVKQTFPDVQVIGGNIA------TAEAAKALAEAGADAVKVGIGPGSICTTRIV-AG-VGVPQISAIANV 324 (490)
T ss_dssp SBHHHHHHHHHHHHHCTTSEEEEEEEC------SHHHHHHHHHTTCSEEEECSSCSTTCHHHHH-TC-BCCCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCceEEEeeeC------cHHHHHHHHHcCCCEEEECCCCCcCCCcccc-CC-CCccHHHHHHHH
Confidence 3567778999999887 7899886321 34668999999999999832 11111 11 245688888888
Q ss_pred HhhC---CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 76 KNAL---RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 76 ~~~~---~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
++.+ ++|||++|||.+++|+.+++. .|||+||+|+.++.-+.-.
T Consensus 325 ~~~~~~~~iPVIa~GGI~~~~di~kal~-~GAd~V~vGs~~~~~~Esp 371 (490)
T 4avf_A 325 AAALEGTGVPLIADGGIRFSGDLAKAMV-AGAYCVMMGSMFAGTEEAP 371 (490)
T ss_dssp HHHHTTTTCCEEEESCCCSHHHHHHHHH-HTCSEEEECTTTTTBTTSS
T ss_pred HHHhccCCCcEEEeCCCCCHHHHHHHHH-cCCCeeeecHHHhcCCCCC
Confidence 8754 799999999999999999997 7999999999999866543
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-09 Score=92.27 Aligned_cols=51 Identities=22% Similarity=0.444 Sum_probs=46.3
Q ss_pred cccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 66 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+++.++++++.+++||+ ++|||.|++|+.++++ .|||+|++||+++.++
T Consensus 193 ~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~-~GadgV~vGsai~~~~ 245 (305)
T 2nv1_A 193 GAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQ-LGADGVFVGSGIFKSD 245 (305)
T ss_dssp TCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHH-TTCSCEEECGGGGGSS
T ss_pred cccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHH-cCCCEEEEcHHHHcCC
Confidence 4578999999998899999 9999999999999996 8999999999999754
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-09 Score=100.74 Aligned_cols=106 Identities=22% Similarity=0.220 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
.+.+.++++.+++.. ++||.++--. +.+.++.+.++|+|+|.|.. .++.. .+ .+.+++..+.+++
T Consensus 256 ~~~~~~~i~~ir~~~p~~~Vi~g~v~------t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~-~g-~g~p~~~~i~~v~ 327 (496)
T 4fxs_A 256 SEGVLQRIRETRAAYPHLEIIGGNVA------TAEGARALIEAGVSAVKVGIGPGSICTTRIV-TG-VGVPQITAIADAA 327 (496)
T ss_dssp SHHHHHHHHHHHHHCTTCCEEEEEEC------SHHHHHHHHHHTCSEEEECSSCCTTBCHHHH-HC-CCCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCceEEEcccC------cHHHHHHHHHhCCCEEEECCCCCcCcccccc-cC-CCccHHHHHHHHH
Confidence 456778899999887 7899885321 34668899999999999842 22211 11 2456788888887
Q ss_pred hh---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 77 NA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 77 ~~---~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+. .++|||++|||.+++|+.+++. .|||+||+|+.+++-..
T Consensus 328 ~~~~~~~iPVIa~GGI~~~~di~kala-~GAd~V~iGs~f~~t~E 371 (496)
T 4fxs_A 328 GVANEYGIPVIADGGIRFSGDISKAIA-AGASCVMVGSMFAGTEE 371 (496)
T ss_dssp HHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBTT
T ss_pred HHhccCCCeEEEeCCCCCHHHHHHHHH-cCCCeEEecHHHhcCCC
Confidence 74 4799999999999999999997 79999999999988554
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-09 Score=96.78 Aligned_cols=99 Identities=20% Similarity=0.220 Sum_probs=76.4
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC---CCcCCCCCcccHHHHHHHHhh-------CC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR---DEKDGKKFRADWNAIKAVKNA-------LR 80 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~---~~~~~~~~~~~~~~i~~i~~~-------~~ 80 (230)
+..+++.+++||.+|-- .+ .+.++.+.++|+|.|.| ++.. .+.. ..+.+.++.+.++++. ++
T Consensus 203 i~~l~~~~~~pvi~ggi--~t----~e~a~~~~~~Gad~i~v-g~Gg~~~~~~~-~~g~~~~~~l~~v~~~~~~~~~~~~ 274 (393)
T 2qr6_A 203 LKEFIGSLDVPVIAGGV--ND----YTTALHMMRTGAVGIIV-GGGENTNSLAL-GMEVSMATAIADVAAARRDYLDETG 274 (393)
T ss_dssp HHHHHHHCSSCEEEECC--CS----HHHHHHHHTTTCSEEEE-SCCSCCHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEECCc--CC----HHHHHHHHHcCCCEEEE-CCCcccccccC-CCCCChHHHHHHHHHHHHHhHhhcC
Confidence 56677777999999632 22 34578888999999999 4411 1111 1245678888887776 54
Q ss_pred ---ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 ---IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ---ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+|||++|||++..|+.+++. .|||+||+||+++..+.
T Consensus 275 ~~~ipvia~GGI~~~~dv~kala-lGA~~V~iG~~~l~~~e 314 (393)
T 2qr6_A 275 GRYVHIIADGSIENSGDVVKAIA-CGADAVVLGSPLARAEE 314 (393)
T ss_dssp SCCCEEEECSSCCSHHHHHHHHH-HTCSEEEECGGGGGSTT
T ss_pred CcceEEEEECCCCCHHHHHHHHH-cCCCEEEECHHHHcCCC
Confidence 99999999999999999997 89999999999999887
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=94.70 Aligned_cols=109 Identities=18% Similarity=0.194 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe--cCCC-CCc--CCCCCcccHHHHHHHHh
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH--GRTR-DEK--DGKKFRADWNAIKAVKN 77 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh--~rt~-~~~--~~~~~~~~~~~i~~i~~ 77 (230)
++.+.++++.+++.+ ++||.+|--. +.+.++.+.++|+|+|.|. +... ..+ .+ .+.+.++.+.++++
T Consensus 125 ~~~~~e~I~~ir~~~~~~~Vi~G~V~------T~e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g-~g~p~l~aI~~~~~ 197 (361)
T 3r2g_A 125 AKYVGKTLKSLRQLLGSRCIMAGNVA------TYAGADYLASCGADIIKAGIGGGSVCSTRIKTG-FGVPMLTCIQDCSR 197 (361)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEEC------SHHHHHHHHHTTCSEEEECCSSSSCHHHHHHHC-CCCCHHHHHHHHTT
T ss_pred cHhHHHHHHHHHHhcCCCeEEEcCcC------CHHHHHHHHHcCCCEEEEcCCCCcCccccccCC-ccHHHHHHHHHHHH
Confidence 456678899998876 7999997321 3456889999999999983 2111 000 01 12346777777776
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
... |||+.|||+++.|+.++|. .|||+||+||.++.......
T Consensus 198 ~~~-PVIAdGGI~~~~di~kALa-~GAd~V~iGr~f~~t~Espg 239 (361)
T 3r2g_A 198 ADR-SIVADGGIKTSGDIVKALA-FGADFVMIGGMLAGSAPTPG 239 (361)
T ss_dssp SSS-EEEEESCCCSHHHHHHHHH-TTCSEEEESGGGTTBTTSSS
T ss_pred hCC-CEEEECCCCCHHHHHHHHH-cCCCEEEEChHHhCCccCCc
Confidence 655 9999999999999999998 89999999999999866433
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.9e-09 Score=98.63 Aligned_cols=112 Identities=18% Similarity=0.221 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-----CcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-----EKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-----~~~~~~~~~~~~~i~~i~ 76 (230)
++....++++.+++.+ ++||.++-- .+ .+.++.+.++|+|+|.|.+.... ...+. +.+.+..+..++
T Consensus 261 ~~~~~~e~i~~i~~~~p~~pvi~g~~--~t----~e~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~-g~p~~~~l~~v~ 333 (494)
T 1vrd_A 261 HSRRVIETLEMIKADYPDLPVVAGNV--AT----PEGTEALIKAGADAVKVGVGPGSICTTRVVAGV-GVPQLTAVMECS 333 (494)
T ss_dssp SSHHHHHHHHHHHHHCTTSCEEEEEE--CS----HHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCC-CCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCCceEEeCCc--CC----HHHHHHHHHcCCCEEEEcCCCCccccccccCCC-CccHHHHHHHHH
Confidence 3566788999999988 799988632 22 34568888999999999442210 00111 234566666665
Q ss_pred hh---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 NA---LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 ~~---~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+. .++|||++|||+++.|+.+++. .|||+|++||+++..|.....
T Consensus 334 ~~~~~~~ipvia~GGI~~~~di~kala-~GAd~V~iGr~~l~~~e~~~~ 381 (494)
T 1vrd_A 334 EVARKYDVPIIADGGIRYSGDIVKALA-AGAESVMVGSIFAGTEEAPGE 381 (494)
T ss_dssp HHHHTTTCCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTBTTSSSE
T ss_pred HHHhhcCCCEEEECCcCCHHHHHHHHH-cCCCEEEECHHHhcCCcCCcc
Confidence 54 6899999999999999999997 799999999999999887543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=1e-09 Score=92.11 Aligned_cols=86 Identities=21% Similarity=0.257 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.++++|+++|+++..+.... ....+ +.++++++.+++||+++|+|.+++++..+++ .|||+|++|+++
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~---~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~-~Gad~V~lg~~~ 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFG---RGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALA-TGCARVNVGTAA 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTT---SCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEcCccccc---CCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHH-cCCCEEEECchH
Confidence 688999999999999999997654321 12345 8999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||+++.++.
T Consensus 107 l~~p~~~~~~~ 117 (244)
T 2y88_A 107 LENPQWCARVI 117 (244)
T ss_dssp HHCHHHHHHHH
T ss_pred hhChHHHHHHH
Confidence 99999887654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.8e-09 Score=90.38 Aligned_cols=88 Identities=27% Similarity=0.393 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
+++.++++.+++.|+++|+++..+... ...+.+++.++++++.+++||+++|+|.+++++.++++ .|||+|++|+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~---~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~-~Gad~V~i~~~ 108 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP---EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTA 108 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT---TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc---cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEEChH
Confidence 368899999999999999999866542 11235688999999999999999999999999988887 89999999999
Q ss_pred hhhCCccccchh
Q 026945 113 LLENPALFAGFR 124 (230)
Q Consensus 113 ~l~nP~lf~~~~ 124 (230)
++.+|+++.++.
T Consensus 109 ~~~~~~~~~~~~ 120 (253)
T 1h5y_A 109 AVRNPQLVALLA 120 (253)
T ss_dssp HHHCTHHHHHHH
T ss_pred HhhCcHHHHHHH
Confidence 999999887654
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.1e-09 Score=94.33 Aligned_cols=110 Identities=20% Similarity=0.179 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i 75 (230)
+++.+.+.++.+++.. ++||.+..-. +.+.++.+.++|+|+|.+.. .|+.. . ..+.+.+..+.++
T Consensus 132 ~~~~~~~~I~~ik~~~p~v~Vi~G~v~------t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~-~-g~g~p~~~~l~~v 203 (366)
T 4fo4_A 132 HSEGVLQRIRETRAAYPHLEIIGGNVA------TAEGARALIEAGVSAVKVGIGPGSICTTRIV-T-GVGVPQITAIADA 203 (366)
T ss_dssp TSHHHHHHHHHHHHHCTTCEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSTTBCHHHH-H-CCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCceEeeeeC------CHHHHHHHHHcCCCEEEEecCCCCCCCcccc-c-CcccchHHHHHHH
Confidence 4566778888898877 7888775211 34668889999999999921 11110 0 1234567777777
Q ss_pred Hh---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 76 KN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 76 ~~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++ .+++|||+.|||.++.|+.+++. .|||+||+|+.++..+.-..
T Consensus 204 ~~~~~~~~iPVIA~GGI~~~~di~kala-~GAd~V~vGs~f~~t~Esp~ 251 (366)
T 4fo4_A 204 AGVANEYGIPVIADGGIRFSGDISKAIA-AGASCVMVGSMFAGTEEAPG 251 (366)
T ss_dssp HHHHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBTTSSS
T ss_pred HHHHhhcCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHhhcCCCCCc
Confidence 65 56899999999999999999997 79999999999998776543
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-08 Score=91.20 Aligned_cols=112 Identities=11% Similarity=0.103 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+++...++++++++++ ++|+.++.+-+|+.+++.++++.+++.|+++|. | .. ++.+|+..+++++.+++
T Consensus 173 ~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~~i 242 (384)
T 2pgw_A 173 GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE-------Q--PT-VSWSIPAMAHVREKVGI 242 (384)
T ss_dssp CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe-------C--CC-ChhhHHHHHHHHhhCCC
Confidence 5678889999999988 699999999999999999999999999999987 2 12 35689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
||++++.+.+++++.++++...||+|++..+.++.++-+.++.
T Consensus 243 PI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~ 285 (384)
T 2pgw_A 243 PIVADQAAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKAA 285 (384)
T ss_dssp CEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHHH
Confidence 9999999999999999999888999999999999998776653
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=91.65 Aligned_cols=86 Identities=22% Similarity=0.255 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.++++|+++|+++..+.... + ...+ +.++++++.+++||+++|+|.+++++..+++ .|||+|++|+.+
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~-~--~~~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~-~Gad~V~lg~~~ 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFG-T--GDNR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALA-TGCTRVNLGTAA 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHT-S--CCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhc-C--CChH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHH-cCCCEEEECchH
Confidence 678899999999999999997654321 1 1445 8999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchh
Q 026945 114 LENPALFAGFR 124 (230)
Q Consensus 114 l~nP~lf~~~~ 124 (230)
+.||+++.++.
T Consensus 108 l~~p~~~~~~~ 118 (244)
T 1vzw_A 108 LETPEWVAKVI 118 (244)
T ss_dssp HHCHHHHHHHH
T ss_pred hhCHHHHHHHH
Confidence 99999887654
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.9e-09 Score=94.90 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCC------C------hHHHHHHHHHHHHcC-----CCEEEEecCCCCCcCCCC-
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFP------N------LQDTIKYAKMLEDAG-----CSLLAVHGRTRDEKDGKK- 64 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~------~------~~~~~~~a~~l~~~G-----~~~i~vh~rt~~~~~~~~- 64 (230)
-.++.||+++|++++ .-||.+|+.... + ..+..+++..++..| .+++++............
T Consensus 222 ~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (400)
T 4gbu_A 222 ARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEG 301 (400)
T ss_dssp THHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTT
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccc
Confidence 368899999999987 358999887521 1 124556666665533 456666543221110000
Q ss_pred -CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 65 -FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 65 -~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+.........+++.+++||+++|++.+..++.+.+...+||.|.+||+++.||+|..+++.+
T Consensus 302 ~~~~~~~~~~~ir~~~~~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~G 364 (400)
T 4gbu_A 302 EGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG 364 (400)
T ss_dssp TTCCCSCCSTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred cchhhhHHHHHHHHHhCCCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHcC
Confidence 11111223457778899999999999877777777668899999999999999999998765
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-09 Score=89.31 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++.++++.+++.|++.|.++..+.... . ...+++.++++++.+++||+++|+|.+++++.++++ .|||+|++|+.
T Consensus 30 ~~~~~~a~~~~~~Ga~~i~v~d~~~~~~--~-~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~-~Gad~v~lg~~ 105 (266)
T 2w6r_A 30 ILLRDWVVEVEKRGAGEILLTSIDRDGT--K-SGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADKALAASV 105 (266)
T ss_dssp EEHHHHHHHHHHHTCSEEEEEETTTSSC--S-SCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHH-HTCSEEECCCC
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccC--C-CcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCcHhhhhHH
Confidence 3688999999999999999988765432 1 245899999999999999999999999999999986 89999999999
Q ss_pred hh-h--CCccccchh
Q 026945 113 LL-E--NPALFAGFR 124 (230)
Q Consensus 113 ~l-~--nP~lf~~~~ 124 (230)
++ . +|+.+.++.
T Consensus 106 ~~~~~~~~~~~~~~~ 120 (266)
T 2w6r_A 106 FHFREIDMRELKEYL 120 (266)
T ss_dssp C------CHHHHHHC
T ss_pred HHhCCCCHHHHHHHH
Confidence 99 5 898887653
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-08 Score=85.45 Aligned_cols=52 Identities=27% Similarity=0.530 Sum_probs=45.9
Q ss_pred cccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 66 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.++++.++++++.+++||+ +.|||.+++++.++++ .|||+|++|++++..++
T Consensus 193 ~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~-~GAdgVlVGsai~~a~d 246 (297)
T 4adt_A 193 RAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQ-LGMDGVFVGSGIFESEN 246 (297)
T ss_dssp TCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHH-TTCSCEEESHHHHTSSC
T ss_pred CCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHH-cCCCEEEEhHHHHcCCC
Confidence 4578889999998889987 9999999999999997 79999999999997543
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-08 Score=83.14 Aligned_cols=117 Identities=12% Similarity=0.220 Sum_probs=86.8
Q ss_pred CCChHHHHHHHHHHhhcC-CceEEEEECC-------CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 1 MDNLPLVKSLVEKLALNL-NVPVSCKIRV-------FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~-~~pvsvKiR~-------g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
++||+++.++.+..-... -+-+.+|.+- +|. ..+..++++.+++.|+..|.++.-.++.. ..++|.
T Consensus 108 ~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt---~~G~d~ 184 (243)
T 4gj1_A 108 IKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGT---MQGVNV 184 (243)
T ss_dssp TTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC--------CCCH
T ss_pred ccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeeccccc---ccCCCH
Confidence 368999999999886442 3344444332 232 12478999999999999999998877643 336799
Q ss_pred HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 70 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.++.+++.+ ++||+++||+.|.+|+.++ + .+++||.+|++++.+-.-+.+
T Consensus 185 ~l~~~l~~~~~~ipviasGGv~~~~Dl~~l-~-~~~~gvivg~Al~~g~i~l~e 236 (243)
T 4gj1_A 185 RLYKLIHEIFPNICIQASGGVASLKDLENL-K-GICSGVIVGKALLDGVFSVEE 236 (243)
T ss_dssp HHHHHHHHHCTTSEEEEESCCCSHHHHHHT-T-TTCSEEEECHHHHTTSSCHHH
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCHHHHHHH-H-ccCchhehHHHHHCCCCCHHH
Confidence 9999999987 6999999999999999875 4 579999999998876554444
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=80.79 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=63.1
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..++++++++|++.+..++.... ...|-.+++.++.+++..++|||+.|||.|++|+..+++ .|||||++|.++..
T Consensus 146 ~~~akrl~~~G~~aVmPlg~pIG---sG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~Ame-LGAdgVlVgSAI~~ 221 (265)
T 1wv2_A 146 PIIARQLAEIGCIAVMPLAGLIG---SGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAVLMNTAIAH 221 (265)
T ss_dssp HHHHHHHHHSCCSEEEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEEEESHHHHT
T ss_pred HHHHHHHHHhCCCEEEeCCccCC---CCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHH-cCCCEEEEChHHhC
Confidence 46778888888888887775321 112346899999999999999999999999999999998 79999999998864
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-08 Score=80.61 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
...++++.+...|+..+.+++++.... .. +.+++.+++++...++||++.||+.+++++.++++ .|+|+|++|+++
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~--~~-g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~-~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGT--KS-GYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTC--CS-CCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-HTCSEEEESHHH
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCc--cc-cccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHH-cCcHHHhhhHHH
Confidence 567889999999999999988643321 22 34589999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.+|+.+.++..
T Consensus 207 ~~~~~~~~~~~~ 218 (237)
T 3cwo_X 207 HFREIDVRELKE 218 (237)
T ss_dssp HTTSSCHHHHHH
T ss_pred HcCCCCHHHHHH
Confidence 999999987753
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.8e-08 Score=93.85 Aligned_cols=108 Identities=20% Similarity=0.204 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i 75 (230)
++..+.++++.+++.. ++||.++--. +.+.++.+.++|+|+|.+.. .++.. .+ .+.+++..+.++
T Consensus 280 ~~~~v~~~i~~i~~~~~~~~vi~g~v~------t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~-~g-~g~p~~~~l~~v 351 (511)
T 3usb_A 280 HSQGVIDKVKEVRAKYPSLNIIAGNVA------TAEATKALIEAGANVVKVGIGPGSICTTRVV-AG-VGVPQLTAVYDC 351 (511)
T ss_dssp TSHHHHHHHHHHHHHCTTSEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSTTCCHHHH-HC-CCCCHHHHHHHH
T ss_pred chhhhhhHHHHHHHhCCCceEEeeeec------cHHHHHHHHHhCCCEEEECCCCccccccccc-cC-CCCCcHHHHHHH
Confidence 3456778889998876 4788876321 35678999999999999822 11111 12 235667777766
Q ss_pred Hh---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 76 KN---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 76 ~~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++ ..++|||++|||.+++|+.+++. .|||+||+||.++.-..-
T Consensus 352 ~~~~~~~~iPVIa~GGI~~~~di~kala-~GA~~V~vGs~~~~~~es 397 (511)
T 3usb_A 352 ATEARKHGIPVIADGGIKYSGDMVKALA-AGAHVVMLGSMFAGVAES 397 (511)
T ss_dssp HHHHHTTTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBTTS
T ss_pred HHHHHhCCCcEEEeCCCCCHHHHHHHHH-hCchhheecHHHhcCccC
Confidence 44 45799999999999999999997 799999999998776553
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5e-08 Score=86.82 Aligned_cols=109 Identities=16% Similarity=0.140 Sum_probs=79.6
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCC--C---CcCCCCCcccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTR--D---EKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~--~---~~~~~~~~~~~~~i~~i~ 76 (230)
++..+.+.++.+++.+ ++||.+|.=. +.+.++.+.++|+|.|.|..... . +..+. +.+....+.++.
T Consensus 144 ~~~~~~~~i~~lr~~~~~~~vi~g~v~------t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~-~~p~~~~l~~v~ 216 (351)
T 2c6q_A 144 YSEHFVEFVKDVRKRFPQHTIMAGNVV------TGEMVEELILSGADIIKVGIGPGSVCTTRKKTGV-GYPQLSAVMECA 216 (351)
T ss_dssp TBHHHHHHHHHHHHHCTTSEEEEEEEC------SHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCB-CCCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEeCC------CHHHHHHHHHhCCCEEEECCCCCcCcCccccCCC-CccHHHHHHHHH
Confidence 4566788899999988 8999887532 24678899999999998853211 0 00111 223444555543
Q ss_pred ---hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 77 ---NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 77 ---~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+..++|||+.|||+++.|+.++|. .|||+|++||.++..+..
T Consensus 217 ~~~~~~~ipvIa~GGI~~g~di~kAla-lGA~~V~vG~~fl~~~Es 261 (351)
T 2c6q_A 217 DAAHGLKGHIISDGGCSCPGDVAKAFG-AGADFVMLGGMLAGHSES 261 (351)
T ss_dssp HHHHHTTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBTTS
T ss_pred HHHhhcCCcEEEeCCCCCHHHHHHHHH-cCCCceeccHHHhcCccC
Confidence 445899999999999999999997 799999999999875443
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=98.74 E-value=4.9e-08 Score=87.17 Aligned_cols=111 Identities=13% Similarity=0.085 Sum_probs=96.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++|+.++.+-+|+.++++++++.+++.|+++|. |. . ++.+|+..+++++.++
T Consensus 173 ~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ 242 (371)
T 2ovl_A 173 DLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWIE-------EP--T-IPDDLVGNARIVRESG 242 (371)
T ss_dssp SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------CC--S-CTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC--C-CcccHHHHHHHHhhCC
Confidence 5677889999999987 699999999999999999999999999999985 21 2 3468999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.|++++.++++...||.|++-.+-++.++-+.++
T Consensus 243 iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 285 (371)
T 2ovl_A 243 HTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNIGGYTTFRKV 285 (371)
T ss_dssp SCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTTTSHHHHHHH
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEeeCccccCCHHHHHHH
Confidence 9999999999999999999988899999988777777655544
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=87.11 Aligned_cols=111 Identities=14% Similarity=0.222 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++|+.++.+-+|+.+++.++++.+++.|+++|. |. . ++.+|+..+++++.++
T Consensus 171 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~ 240 (359)
T 1mdl_A 171 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIE-------EP--T-LQHDYEGHQRIQSKLN 240 (359)
T ss_dssp SHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCEE-------CC--S-CTTCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeEE-------CC--C-ChhhHHHHHHHHHhCC
Confidence 5778889999999987 699999999999999999999999999999884 21 2 2468999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.|++++.++++...||.|++-.+-++.++-+.++
T Consensus 241 iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 283 (359)
T 1mdl_A 241 VPVQMGENWLGPEEMFKALSIGACRLAMPDAMKIGGVTGWIRA 283 (359)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCBTTTTTHHHHHHHH
T ss_pred CCEEeCCCCCCHHHHHHHHHcCCCCEEeecchhhCCHHHHHHH
Confidence 9999999999999999999988899999977766666544443
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.69 E-value=1e-07 Score=85.76 Aligned_cols=103 Identities=17% Similarity=0.286 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
|++.+.++++.+++. +.|+.++++.. ...++++.+.++|++.+.+|++...+... .+..+|+.+.++++.+++|
T Consensus 140 d~~~~~~~i~~~~~~-g~~v~~~v~~~----~~~e~a~~~~~agad~i~i~~~~~~~~~~-~~~~~~~~i~~l~~~~~~p 213 (393)
T 2qr6_A 140 DTELLSERIAQVRDS-GEIVAVRVSPQ----NVREIAPIVIKAGADLLVIQGTLISAEHV-NTGGEALNLKEFIGSLDVP 213 (393)
T ss_dssp CHHHHHHHHHHHHHT-TSCCEEEECTT----THHHHHHHHHHTTCSEEEEECSSCCSSCC-CC-----CHHHHHHHCSSC
T ss_pred CHHHHHHHHHHHhhc-CCeEEEEeCCc----cHHHHHHHHHHCCCCEEEEeCCccccccC-CCcccHHHHHHHHHhcCCC
Confidence 788899999999876 89999998742 35677888889999999999876333211 1123788899999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
|++ ||+.|++++..+++ .|||+|++|+|.
T Consensus 214 vi~-ggi~t~e~a~~~~~-~Gad~i~vg~Gg 242 (393)
T 2qr6_A 214 VIA-GGVNDYTTALHMMR-TGAVGIIVGGGE 242 (393)
T ss_dssp EEE-ECCCSHHHHHHHHT-TTCSEEEESCCS
T ss_pred EEE-CCcCCHHHHHHHHH-cCCCEEEECCCc
Confidence 999 99999999999886 899999998854
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=84.06 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=94.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++|+.++.+-+|+.+++.++++.+++.|+ +|. | .. + +|+..+++++.++
T Consensus 171 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------~--P~--~-~~~~~~~l~~~~~ 237 (379)
T 2rdx_A 171 DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-ILE-------Q--PC--R-SYEECQQVRRVAD 237 (379)
T ss_dssp CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EEE-------C--CS--S-SHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EEe-------C--Cc--C-CHHHHHHHHhhCC
Confidence 4677889999999988 59999999999999999999999999999 874 2 12 3 9999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.+++++.++++...||.|++-.+-++.++-+.++
T Consensus 238 iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 280 (379)
T 2rdx_A 238 QPMKLDECVTGLHMAQRIVADRGAEICCLKISNLGGLSKARRT 280 (379)
T ss_dssp SCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTTTSHHHHHHH
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCCHHHHHHH
Confidence 9999999999999999999988899999988777776655443
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=85.06 Aligned_cols=88 Identities=18% Similarity=0.287 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.+++|+.+.+.|++.+++-.-+.... ..+.+++.++++.+.+.+|+...|||+|.++++++|+ .|||-|.+|..
T Consensus 31 ~dP~~~a~~~~~~gad~lhvvDld~a~~---~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~-~GadkVii~t~ 106 (243)
T 4gj1_A 31 YNPLKKFKEYEKAGAKELHLVDLTGAKD---PSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLD-CGVKRVVIGSM 106 (243)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEHHHHHC---GGGCCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHH-TTCSEEEECTT
T ss_pred CCHHHHHHHHHHCCCCEEEEEecCcccc---cchhHHHHHHHHHHhcCCCeEeccccccHHHHHHHHH-cCCCEEEEccc
Confidence 4688999999999999999987654421 1256889999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchh
Q 026945 113 LLENPALFAGFR 124 (230)
Q Consensus 113 ~l~nP~lf~~~~ 124 (230)
++.||.++.++.
T Consensus 107 a~~~p~li~e~~ 118 (243)
T 4gj1_A 107 AIKDATLCLEIL 118 (243)
T ss_dssp TTTCHHHHHHHH
T ss_pred cccCCchHHHHH
Confidence 999999987654
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=3.9e-07 Score=78.35 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++..++ .++.+.+-+. +.++ ++.+.+.|+++|.+.+|+... + +.+.+.+.++.+.+ +
T Consensus 147 ~~~~l~~l~~~a~~-lGl~~lvev~---t~ee----~~~A~~~Gad~IGv~~r~l~~---~--~~dl~~~~~l~~~v~~~ 213 (272)
T 3qja_A 147 EQSVLVSMLDRTES-LGMTALVEVH---TEQE----ADRALKAGAKVIGVNARDLMT---L--DVDRDCFARIAPGLPSS 213 (272)
T ss_dssp CHHHHHHHHHHHHH-TTCEEEEEES---SHHH----HHHHHHHTCSEEEEESBCTTT---C--CBCTTHHHHHGGGSCTT
T ss_pred CHHHHHHHHHHHHH-CCCcEEEEcC---CHHH----HHHHHHCCCCEEEECCCcccc---c--ccCHHHHHHHHHhCccc
Confidence 34556777777654 5777766553 2222 344557899999999876432 1 45778888998887 6
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+||++.|||+|++|+.++++ .|+|||.+|++++..++.-.
T Consensus 214 ~pvVaegGI~t~edv~~l~~-~GadgvlVGsal~~a~dp~~ 253 (272)
T 3qja_A 214 VIRIAESGVRGTADLLAYAG-AGADAVLVGEGLVTSGDPRA 253 (272)
T ss_dssp SEEEEESCCCSHHHHHHHHH-TTCSEEEECHHHHTCSCHHH
T ss_pred CEEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHhCCCCHHH
Confidence 99999999999999999886 89999999999998776443
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=83.08 Aligned_cols=108 Identities=10% Similarity=0.033 Sum_probs=95.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+...++++++++++ ++++.++.+-+|+.+++.++++.+++.|+ +|. | .. + +|+.++++++.++
T Consensus 171 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i-~iE-------q--P~--~-~~~~~~~l~~~~~ 237 (378)
T 3eez_A 171 DVERDIARIRDVEDIREPGEIVLYDVNRGWTRQQALRVMRATEDLHV-MFE-------Q--PG--E-TLDDIAAIRPLHS 237 (378)
T ss_dssp CHHHHHHHHHHHTTSCCTTCEEEEECTTCCCHHHHHHHHHHTGGGTC-CEE-------C--CS--S-SHHHHHHTGGGCC
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHhccCCe-EEe-------c--CC--C-CHHHHHHHHhhCC
Confidence 5777889999999988 68999999999999999999999999998 874 2 12 2 8999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.+++++.++++..++|.|++-.+-++.++-+.++
T Consensus 238 iPIa~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~GGit~~~~i 280 (378)
T 3eez_A 238 APVSVDECLVTLQDAARVARDGLAEVFGIKLNRVGGLTRAARM 280 (378)
T ss_dssp CCEEECTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHH
Confidence 9999999999999999999988899999999988888766654
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-07 Score=79.04 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=45.0
Q ss_pred cccHHHHHHHHhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 66 RADWNAIKAVKNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+.+++.++++++.+++||+ +.|||.|++++.++++ .|||+|++|++++..+
T Consensus 193 ~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~-aGadgvvvGsai~~~~ 245 (297)
T 2zbt_A 193 GAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMH-LGMDGVFVGSGIFKSG 245 (297)
T ss_dssp TCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHH-TTCSEEEECGGGGGSS
T ss_pred hhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHH-cCCCEEEEchHHhCCC
Confidence 3467889999998899998 9999999999999997 7999999999998543
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.6e-07 Score=84.30 Aligned_cols=109 Identities=9% Similarity=0.080 Sum_probs=93.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++. .++++++++++ ++|+.++.+-+|+.+++.++++.+++.|+++|. |. . ++.+|+..+++++.++
T Consensus 191 ~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ 259 (388)
T 2nql_A 191 DDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFAE-------AP--V-WTEDIAGLEKVSKNTD 259 (388)
T ss_dssp TTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCEE-------CC--S-CTTCHHHHHHHHTSCC
T ss_pred ChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------CC--C-ChhhHHHHHHHHhhCC
Confidence 5677 89999999877 699999999999999999999999999999985 21 2 2468999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.+++++.++++...||.|++-.+- +.++-+.++
T Consensus 260 iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~-GGit~~~~i 301 (388)
T 2nql_A 260 VPIAVGEEWRTHWDMRARIERCRIAIVQPEMGH-KGITNFIRI 301 (388)
T ss_dssp SCEEECTTCCSHHHHHHHHTTSCCSEECCCHHH-HCHHHHHHH
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCCEEEecCCC-CCHHHHHHH
Confidence 999999999999999999998889999997777 766655443
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=3.9e-07 Score=92.92 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~i~~i 75 (230)
+++.+.++++.+++.. ++||.||+-...+ ..+.|+.+.++|+|.|+|.|........ ..|.+....+.++
T Consensus 976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g---i~~~A~~a~~AGAD~IvVsG~eGGTgasp~~~~~~~G~Pt~~aL~ev 1052 (1479)
T 1ea0_A 976 SIEDLAQLIYDLKQINPDAKVTVKLVSRSG---IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEV 1052 (1479)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEEECCTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEEcCCCC---hHHHHHHHHHcCCcEEEEcCCCCCCCCCchhhhcCCchhHHHHHHHH
Confidence 4677889999999988 8999999875432 3346888999999999997653211000 1122233556666
Q ss_pred HhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 76 KNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 76 ~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.+.+ ++||++.|||.|..|+.+++. .|||+|++||++|...
T Consensus 1053 ~~al~~~glr~~VpVIAdGGIrtG~DVakALa-LGAdaV~iGTafL~a~ 1100 (1479)
T 1ea0_A 1053 HQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM-LGAEEFGIGTASLIAM 1100 (1479)
T ss_dssp HHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH-TTCSEEECCHHHHHHH
T ss_pred HHHHHHcCCCCCceEEEECCCCCHHHHHHHHH-cCCCeeeEcHHHHHHH
Confidence 6643 699999999999999999997 8999999999998743
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-07 Score=93.06 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~i~~i 75 (230)
+++-+.++|+.+++.. ++||.||+-...+ ..+.++.+.++|+|.|+|.|...-.... ..+.+....+.++
T Consensus 1011 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g---i~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~~~~GlPt~~aL~ev 1087 (1520)
T 1ofd_A 1011 SIEDLAQLIYDLHQINPEAQVSVKLVAEIG---IGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEV 1087 (1520)
T ss_dssp SHHHHHHHHHHHHHHCTTSEEEEEEECSTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEecCCCC---hHHHHHHHHHcCCCEEEEeCCCCccCCCcchhhcCCchhHHHHHHHH
Confidence 4677889999999988 8999999865432 3457788999999999998754221100 0112223555666
Q ss_pred HhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 76 KNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 76 ~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
.+.+ ++||++.|||.|..|+.+++. .|||+|++||++|...
T Consensus 1088 ~~al~~~glr~~IpVIAdGGIrtG~DVakALa-LGAdaV~iGTafL~al 1135 (1520)
T 1ofd_A 1088 HRVLMENQLRDRVLLRADGGLKTGWDVVMAAL-MGAEEYGFGSIAMIAE 1135 (1520)
T ss_dssp HHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH-TTCSEEECSHHHHHHT
T ss_pred HHHHHhcCCCCCceEEEECCCCCHHHHHHHHH-cCCCeeEEcHHHHHHH
Confidence 5543 699999999999999999997 8999999999998754
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-07 Score=77.42 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 38 YAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 38 ~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
-++.+.+.|+|+|.+......+. .+. .+.+|+.++++++.+++||++.||| +++++.++++ +|+|+|++|++++.+
T Consensus 122 ~~~~a~~~gaD~i~~~~~f~~~~~~g~-~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~-~Ga~gv~vgs~i~~~ 198 (221)
T 1yad_A 122 EAVQAEKEDADYVLFGHVFETDCKKGL-EGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQ-AGADGIAVMSGIFSS 198 (221)
T ss_dssp HHHHHHHTTCSEEEEECCC-----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHH-TTCSEEEESHHHHTS
T ss_pred HHHHHHhCCCCEEEECCccccCCCCCC-CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHH-cCCCEEEEhHHhhCC
Confidence 35667789999999977532221 111 2467999999998889999999999 9999999997 899999999999887
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
|+
T Consensus 199 ~d 200 (221)
T 1yad_A 199 AE 200 (221)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=9.8e-07 Score=78.90 Aligned_cols=108 Identities=10% Similarity=0.114 Sum_probs=93.0
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.++.+-+|+.++++++++.+++.|+++|. | .. ++.+|+..+++++.++
T Consensus 182 ~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~--P~-~~~~~~~~~~l~~~~~ 251 (382)
T 1rvk_A 182 DVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIE-------E--PM-DEQSLSSYKWLSDNLD 251 (382)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred chHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------C--CC-ChhhHHHHHHHHhhCC
Confidence 6788889999999977 699999999999999999999999999999985 2 12 2458999999999999
Q ss_pred ccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 81 IPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 81 ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
+||++.+.+.| ++++.++++...||.|++--+-++...-+
T Consensus 252 iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~ 292 (382)
T 1rvk_A 252 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVGGITPA 292 (382)
T ss_dssp SCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHTSHHHH
T ss_pred CCEEEeCCccCcHHHHHHHHHcCCCCEEeeCchhcCCHHHH
Confidence 99999999999 99999999988899999966555554433
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.7e-07 Score=78.41 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
..++...+..|...+.+-+.. .+.+.+.++++++.+ ++||++.|||+|++++.++++ .|||+|.+|+++
T Consensus 189 ~aYa~~gad~G~~lV~LD~~~--------~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~-aGAD~VVVGSAa 259 (286)
T 3vk5_A 189 DRYLHVARAFGFHMVYLYSRN--------EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLD-SGADYVGFAGAL 259 (286)
T ss_dssp HHHHHHHHHTTCSEEEEECSS--------SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHH-TTCSEEEESGGG
T ss_pred HHHHHHHHHcCCCEEEEcCCC--------CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHH-cCCCEEEECchh
Confidence 567777788898888877532 145789999999999 899999999999999999997 799999999999
Q ss_pred hhC--Cccccchh
Q 026945 114 LEN--PALFAGFR 124 (230)
Q Consensus 114 l~n--P~lf~~~~ 124 (230)
+.| |.+++++.
T Consensus 260 v~d~~Pelv~e~a 272 (286)
T 3vk5_A 260 EQPDWRSALAEIA 272 (286)
T ss_dssp SSTTHHHHHHHHH
T ss_pred hcCCCHHHHHHHH
Confidence 999 77877764
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=4.1e-07 Score=80.98 Aligned_cols=111 Identities=6% Similarity=0.079 Sum_probs=95.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHH-HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~-~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++|+.++.+-+|+.+++. ++++.+++.|+++|. | .. ++.||+..+++++.+
T Consensus 167 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~ 236 (369)
T 2p8b_A 167 NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLGHLNIDWIE-------Q--PV-IADDIDAMAHIRSKT 236 (369)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTSTTSCCSCEE-------C--CB-CTTCHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEE-------C--CC-CcccHHHHHHHHHhC
Confidence 5677889999999987 689999999999989999 999999999999886 2 12 356899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||++++.+.+++++.++++...||+|++--+-++.++-+.++
T Consensus 237 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 280 (369)
T 2p8b_A 237 DLPLMIDEGLKSSREMRQIIKLEAADKVNIKLMKCGGIYPAVKL 280 (369)
T ss_dssp CSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CCCEEeCCCCCCHHHHHHHHHhCCCCEEEeecchhCCHHHHHHH
Confidence 99999999999999999999988899999987777776654443
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.7e-07 Score=74.16 Aligned_cols=105 Identities=16% Similarity=0.217 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccE
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPV 83 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipv 83 (230)
+.+.++++.+++. ++++.+-+.. + .+..+.++.+.+.|+++|.++.....+. . ++..++.++++++.+ ++||
T Consensus 90 ~~~~~~~~~~~~~-g~~~~v~~~~-~--~t~~~~~~~~~~~g~d~i~v~~g~~g~~--~-~~~~~~~i~~l~~~~~~~~i 162 (211)
T 3f4w_A 90 LTIQSCIRAAKEA-GKQVVVDMIC-V--DDLPARVRLLEEAGADMLAVHTGTDQQA--A-GRKPIDDLITMLKVRRKARI 162 (211)
T ss_dssp HHHHHHHHHHHHH-TCEEEEECTT-C--SSHHHHHHHHHHHTCCEEEEECCHHHHH--T-TCCSHHHHHHHHHHCSSCEE
T ss_pred hHHHHHHHHHHHc-CCeEEEEecC-C--CCHHHHHHHHHHcCCCEEEEcCCCcccc--c-CCCCHHHHHHHHHHcCCCcE
Confidence 4456667776654 5666553221 1 2345778889999999999875422221 1 233678999999986 8999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++.|||+ ++++.++++ .|||+|.+||+++..++
T Consensus 163 ~~~gGI~-~~~~~~~~~-~Gad~vvvGsai~~~~d 195 (211)
T 3f4w_A 163 AVAGGIS-SQTVKDYAL-LGPDVVIVGSAITHAAD 195 (211)
T ss_dssp EEESSCC-TTTHHHHHT-TCCSEEEECHHHHTCSS
T ss_pred EEECCCC-HHHHHHHHH-cCCCEEEECHHHcCCCC
Confidence 9999995 999999886 89999999999987654
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.50 E-value=6.5e-07 Score=74.98 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.++...+|...+-.|...+-+.+ +.. . .+.+.++++++.+ ++||++.|||+|++++.+++ .|||+|.+|
T Consensus 139 ~e~~~~~a~~a~~~g~~~VYld~-sG~-----~--~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVG 208 (228)
T 3vzx_A 139 MDDIVAYARVSELLQLPIFYLEY-SGV-----L--GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVG 208 (228)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEC-TTS-----C--CCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH--TTCSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEecC-CCC-----c--CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH--hCCCEEEEC
Confidence 46677778878888899998877 322 1 2789999999999 79999999999999999987 499999999
Q ss_pred hhhhhCCccccchh
Q 026945 111 ESLLENPALFAGFR 124 (230)
Q Consensus 111 R~~l~nP~lf~~~~ 124 (230)
.++..||.++.++-
T Consensus 209 Sa~v~~p~~~~~~v 222 (228)
T 3vzx_A 209 NAVYEDFDRALKTV 222 (228)
T ss_dssp THHHHCHHHHHHHH
T ss_pred hHHhcCHHHHHHHH
Confidence 99999999888654
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.8e-07 Score=81.04 Aligned_cols=109 Identities=9% Similarity=0.005 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-hC
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-AL 79 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~ 79 (230)
+...++++++++++ ++++.++.+-+| +.++++++++.+++.|+++|. |. . ++.+|+..+++++ .+
T Consensus 177 ~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ 246 (401)
T 2hzg_A 177 AADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAAARLPTLDAAGVLWLE-------EP--F-DAGALAAHAALAGRGA 246 (401)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHHTTHHHHHHTTCSEEE-------CC--S-CTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC--C-CccCHHHHHHHHhhCC
Confidence 67789999999987 699999999999 999999999999999999985 21 2 2468999999999 89
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||++++.+.|++++.++++...||.|++-.+-++.++-+.++
T Consensus 247 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i 290 (401)
T 2hzg_A 247 RVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRV 290 (401)
T ss_dssp SSEEEECTTCSSHHHHHHHHHHSCCSEEEECHHHHTSHHHHHHH
T ss_pred CCCEEecCCcCCHHHHHHHHHCCCCCEEEeCcchhCCHHHHHHH
Confidence 99999999999999999999988899999988887777655443
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=98.49 E-value=6.5e-07 Score=80.04 Aligned_cols=107 Identities=10% Similarity=0.097 Sum_probs=94.0
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++|+.++.+-+|+.++++++++.++ .|+ +|. | .. + ||+..+++++.++
T Consensus 172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i-~iE-------q--P~--~-d~~~~~~l~~~~~ 237 (378)
T 2qdd_A 172 DPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD-WIE-------Q--PC--Q-TLDQCAHVARRVA 237 (378)
T ss_dssp CHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC-EEE-------C--CS--S-SHHHHHHHHTTCC
T ss_pred ChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc-EEE-------c--CC--C-CHHHHHHHHHhCC
Confidence 5678889999999987 6999999999999999999999998 999 773 3 12 3 9999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+||++++.+.+++++.++++...||.|++-.+.++.++-+.++
T Consensus 238 iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~~~~~i 280 (378)
T 2qdd_A 238 NPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLTRARQI 280 (378)
T ss_dssp SCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred CCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 9999999999999999999988899999998888888766554
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-07 Score=82.73 Aligned_cols=110 Identities=19% Similarity=0.162 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~ 76 (230)
++...+.++.+++.+ ++|+..+-=. +.+.++.+.++|++.|.+... ++. ..+. +.+..+.+.++.
T Consensus 258 ~~~~~~~i~~l~~~~p~~pvi~G~v~------t~~~a~~~~~~Gad~I~vg~g~g~~~~tr~-~~~~-~~p~~~~l~~~~ 329 (491)
T 1zfj_A 258 SAGVLRKIAEIRAHFPNRTLIAGNIA------TAEGARALYDAGVDVVKVGIGPGSICTTRV-VAGV-GVPQVTAIYDAA 329 (491)
T ss_dssp CHHHHHHHHHHHHHCSSSCEEEEEEC------SHHHHHHHHHTTCSEEEECSSCCTTBCHHH-HTCC-CCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCCcEeCCCcc------CHHHHHHHHHcCCCEEEECccCCcceEEee-ecCC-CCCcHHHHHHHH
Confidence 455667788888887 7888754211 236677888999999988521 111 0111 344667777766
Q ss_pred h---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 77 N---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 77 ~---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
. ..++|||+.|||+++.|+.+++. .|||+||+||+++..++...+
T Consensus 330 ~~~~~~~ipvia~GGi~~~~di~kal~-~GA~~v~vG~~~~~~~e~~~~ 377 (491)
T 1zfj_A 330 AVAREYGKTIIADGGIKYSGDIVKALA-AGGNAVMLGSMFAGTDEAPGE 377 (491)
T ss_dssp HHHHHTTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBSSCCCC
T ss_pred HHHhhcCCCEEeeCCCCCHHHHHHHHH-cCCcceeeCHHhhCCCcCcce
Confidence 5 46899999999999999999997 799999999999987665543
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.3e-07 Score=79.78 Aligned_cols=109 Identities=13% Similarity=0.142 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++|+.++.+-+|+.++++++++.+++.|+++|. |. . ++.+|+..+++++.+++
T Consensus 177 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~i 246 (391)
T 2qgy_A 177 LSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWIE-------EP--V-DGENISLLTEIKNTFNM 246 (391)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEEE-------CS--S-CTTCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeEe-------CC--C-ChhhHHHHHHHHhhCCC
Confidence 577889999999977 699999999999999999999999999999985 21 2 24689999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
||++.+.+.+++++.++++...+|.|++--+-++.++-+.+
T Consensus 247 PIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~ 287 (391)
T 2qgy_A 247 KVVTGEKQSGLVHFRELISRNAADIFNPDISGMGGLIDIIE 287 (391)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCBTTTSSCHHHHHH
T ss_pred CEEEcCCcCCHHHHHHHHHcCCCCEEEECcchhCCHHHHHH
Confidence 99999999999999999998889999997666666554443
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=72.01 Aligned_cols=113 Identities=18% Similarity=0.200 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCC------------------------
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTR------------------------ 57 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~------------------------ 57 (230)
+.....++++++++.+++||.+.....+. .....++++.+.++|++.+++|.-..
T Consensus 64 ~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~ 143 (248)
T 1geq_A 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPN 143 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTT
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCC
Confidence 34556789999999888998886642110 01125788888999999999885110
Q ss_pred --CCc-----------------CCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 58 --DEK-----------------DGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 58 --~~~-----------------~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+. .++.+ +...+.++++++.+++||++.|||++++++.++++ .|+|+|.+|++
T Consensus 144 t~~e~~~~~~~~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GGI~~~e~i~~~~~-~Gad~vivGsa 222 (248)
T 1geq_A 144 TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLK-EGANGVVVGSA 222 (248)
T ss_dssp CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHH
T ss_pred CHHHHHHHHHhcCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEeecCCHHHHHHHHH-cCCCEEEEcHH
Confidence 000 01111 12366889999988999999999999999999886 89999999999
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
++..
T Consensus 223 i~~~ 226 (248)
T 1geq_A 223 LVKI 226 (248)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8865
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=78.89 Aligned_cols=106 Identities=9% Similarity=0.138 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH-hhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK-NAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~-~~~ 79 (230)
+++...++++++++++ ++++.++.+-+|+.+++.++++.+++.|+++|. | .. ++.|++..++++ +.+
T Consensus 177 ~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 246 (389)
T 3ozy_A 177 APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFE-------E--PL-SIDDIEGHRILRAQGT 246 (389)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEE-------S--CS-CTTCHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHhcCC
Confidence 5677889999999987 689999999999999999999999999999996 2 12 245899999999 999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++||++++.+.+++++.++++...+|.|++--+-.+...
T Consensus 247 ~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit 285 (389)
T 3ozy_A 247 PVRIATGENLYTRNAFNDYIRNDAIDVLQADASRAGGIT 285 (389)
T ss_dssp SSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTSSCHH
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 999999999999999999999888999998655555444
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2e-06 Score=76.51 Aligned_cols=109 Identities=12% Similarity=0.123 Sum_probs=92.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+++|. | .. ++.+|+..+++++.++
T Consensus 170 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~~ 239 (370)
T 1nu5_A 170 TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVE-------Q--PV-PRANFGALRRLTEQNG 239 (370)
T ss_dssp CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceEe-------C--CC-CcccHHHHHHHHHhCC
Confidence 4667788999999876 589999999999999999999999999999985 2 12 2468999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+||++++.+.+++++.++++...+|.|++--+-.+.++-+.
T Consensus 240 ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~ 280 (370)
T 1nu5_A 240 VAILADESLSSLSSAFELARDHAVDAFSLKLCNMGGIANTL 280 (370)
T ss_dssp SEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHH
T ss_pred CCEEeCCCCCCHHHHHHHHHhCCCCEEEEchhhcCCHHHHH
Confidence 99999999999999999999888999999766666655443
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=2.8e-06 Score=72.93 Aligned_cols=108 Identities=16% Similarity=0.149 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++..++ .++.+.|-+. +. +-++.+.++|++.|.+.+|+... + ..|++...++.+.+ +
T Consensus 154 ~~~~l~~l~~~a~~-lGl~~lvevh---~~----eEl~~A~~~ga~iIGinnr~l~t---~--~~dl~~~~~L~~~ip~~ 220 (272)
T 3tsm_A 154 DDDLAKELEDTAFA-LGMDALIEVH---DE----AEMERALKLSSRLLGVNNRNLRS---F--EVNLAVSERLAKMAPSD 220 (272)
T ss_dssp CHHHHHHHHHHHHH-TTCEEEEEEC---SH----HHHHHHTTSCCSEEEEECBCTTT---C--CBCTHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC---CH----HHHHHHHhcCCCEEEECCCCCcc---C--CCChHHHHHHHHhCCCC
Confidence 44566677776655 4666666553 22 22466678999999999886542 2 46788888888877 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+|+|+-|||.|++|+.++.+ .|+|||.||.+++..++.-..++
T Consensus 221 ~~vIaesGI~t~edv~~l~~-~Ga~gvLVG~almr~~d~~~~~~ 263 (272)
T 3tsm_A 221 RLLVGESGIFTHEDCLRLEK-SGIGTFLIGESLMRQHDVAAATR 263 (272)
T ss_dssp SEEEEESSCCSHHHHHHHHT-TTCCEEEECHHHHTSSCHHHHHH
T ss_pred CcEEEECCCCCHHHHHHHHH-cCCCEEEEcHHHcCCcCHHHHHH
Confidence 99999999999999999886 89999999999999888765543
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=5.1e-07 Score=73.86 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=60.9
Q ss_pred HHHHHHcCCCEEEEecCCCC-CcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 39 AKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~-~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+..+.+.|+++|.+++.... .+.+ ..+.+|+.++++++.+++||++.|||+ ++++.++++ .|+|+|++|++++..|
T Consensus 121 ~~~~~~~g~d~i~~~~~~~~~~~~~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i~~~~ 197 (215)
T 1xi3_A 121 ALEAEKKGADYLGAGSVFPTKTKED-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLK-TGVDGIAVISAVMGAE 197 (215)
T ss_dssp HHHHHHHTCSEEEEECSSCC----C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHT-TTCSEEEESHHHHTSS
T ss_pred HHHHHhcCCCEEEEcCCccCCCCCC-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHH-cCCCEEEEhHHHhCCC
Confidence 34567789999999764222 1112 235689999999988899999999998 999999876 8999999999999876
Q ss_pred c
Q 026945 118 A 118 (230)
Q Consensus 118 ~ 118 (230)
+
T Consensus 198 d 198 (215)
T 1xi3_A 198 D 198 (215)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=75.38 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=91.6
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~--~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++...++++++++++ ++++.+..+-+|+.++++++++.+++ .|+++|. | .. ++.+|+..+++++.
T Consensus 167 ~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~ 236 (366)
T 1tkk_A 167 DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVE-------Q--PV-HKDDLAGLKKVTDA 236 (366)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEEE-------C--CS-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCceEEE-------C--CC-CcccHHHHHHHHhh
Confidence 5677889999999887 68999999999999999999999999 8888885 2 12 34689999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+++||++++.+.+++++.++++...+|.|++--.-.+.+.-
T Consensus 237 ~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~ 277 (366)
T 1tkk_A 237 TDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISG 277 (366)
T ss_dssp CSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHHH
T ss_pred CCCCEEEcCCCCCHHHHHHHHHhCCCCEEEeehhhhcCHHH
Confidence 99999999999999999999998889999996655555443
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.6e-06 Score=80.59 Aligned_cols=104 Identities=19% Similarity=0.184 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhhcC-C-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC------CcCCCCCcccHHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-N-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------EKDGKKFRADWNAIKAV 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~------~~~~~~~~~~~~~i~~i 75 (230)
+..+.+.++.+++.. + +||.++-.. +.+-++.+.++|++.+.| |.... +..+ .+.+....+.++
T Consensus 267 ~~~~~~~i~~lk~~~~~~~~Vi~G~V~------t~~~a~~l~~aGad~I~V-g~~~g~~~~~r~~~~-~g~p~~~~l~~v 338 (503)
T 1me8_A 267 SEWQKITIGWIREKYGDKVKVGAGNIV------DGEGFRYLADAGADFIKI-GIGGGSICITREQKG-IGRGQATAVIDV 338 (503)
T ss_dssp SHHHHHHHHHHHHHHGGGSCEEEEEEC------SHHHHHHHHHHTCSEEEE-CSSCSTTCCSTTTTC-CCCCHHHHHHHH
T ss_pred ccchhhHHHHHHHhCCCCceEeecccc------CHHHHHHHHHhCCCeEEe-cccCCcCcccccccC-CCCchHHHHHHH
Confidence 344555667777665 4 788776543 235678888999999988 43211 0011 134456666666
Q ss_pred HhhC---------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 76 KNAL---------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 76 ~~~~---------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+.+ ++|||+.|||+++.|+.++|. .|||+||+|+.++.-
T Consensus 339 ~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAla-lGA~~V~iG~~~~~~ 387 (503)
T 1me8_A 339 VAERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-MGADFIMLGRYFARF 387 (503)
T ss_dssp HHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTB
T ss_pred HHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHH-cCCCEEEECchhhcc
Confidence 5442 699999999999999999997 799999999998864
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-06 Score=76.65 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=91.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++++.++.+-+|+.+++.++++.+ ++.|+ +|. | .. + +|+..+++++.+
T Consensus 172 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~~i-~iE-------~--P~--~-~~~~~~~l~~~~ 238 (371)
T 2ps2_A 172 EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLPHGLDF-ALE-------A--PC--A-TWRECISLRRKT 238 (371)
T ss_dssp CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSCTTCCC-EEE-------C--CB--S-SHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHHhhcCC-cCc-------C--Cc--C-CHHHHHHHHhhC
Confidence 4677889999999987 689999999999999999999999 99999 774 2 12 2 899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++||++++.+.+++++.++++...||.|++--+-++.+.-+.
T Consensus 239 ~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~ 280 (371)
T 2ps2_A 239 DIPIIYDELATNEMSIVKILADDAAEGIDLKISKAGGLTRGR 280 (371)
T ss_dssp CSCEEESTTCCSHHHHHHHHHHTCCSEEEEEHHHHTSHHHHH
T ss_pred CCCEEeCCCcCCHHHHHHHHHhCCCCEEEechhhcCCHHHHH
Confidence 999999999999999999999888999999776666655443
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.2e-06 Score=77.11 Aligned_cols=98 Identities=10% Similarity=0.095 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. +. . ++.+|+..+++++.++
T Consensus 189 ~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~P--~-~~~~~~~~~~l~~~~~ 258 (393)
T 2og9_A 189 DGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWIE-------EP--L-DAYDHEGHAALALQFD 258 (393)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------CC--S-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------CC--C-CcccHHHHHHHHHhCC
Confidence 4677889999999986 689999999899999999999999999999885 21 1 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||++.+.+.+++++.++++...||.|++-
T Consensus 259 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 259 TPIATGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCEEeCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 999999999999999999998789999873
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.39 E-value=4.8e-06 Score=74.64 Aligned_cols=106 Identities=13% Similarity=0.190 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.++++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 176 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 245 (383)
T 3i4k_A 176 DPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPILAEAGVELFE-------Q--PT-PADDLETLREITRRTN 245 (383)
T ss_dssp CHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEE-------S--CS-CTTCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-ChhhHHHHHHHHhhCC
Confidence 6778889999999987 589999999999999999999999999999997 2 11 2457999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||++.+.+.+++++.++++...+|.|++--+-.+...
T Consensus 246 iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 283 (383)
T 3i4k_A 246 VSVMADESVWTPAEALAVVKAQAADVIALKTTKHGGLL 283 (383)
T ss_dssp CEEEESTTCSSHHHHHHHHHHTCCSEEEECTTTTTSHH
T ss_pred CCEEecCccCCHHHHHHHHHcCCCCEEEEcccccCCHH
Confidence 99999999999999999999888999998654444433
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.1e-06 Score=69.90 Aligned_cols=111 Identities=13% Similarity=0.152 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHhhc-CCceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------------
Q 026945 4 LPLVKSLVEKLALN-LNVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------------- 60 (230)
Q Consensus 4 p~~~~eiv~~v~~~-~~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------------- 60 (230)
.+.+.++++++++. .++||.+-.-..+- ......|++.+.++|+|.+.++.-..++.
T Consensus 79 ~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~ 158 (267)
T 3vnd_A 79 SSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPN 158 (267)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCC
Confidence 45677899999887 78998774321110 01235788888888888888864321100
Q ss_pred ----------------------CCCCCc------ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 61 ----------------------DGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 61 ----------------------~~~~~~------~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.+|. ...+.++++++..++||++.|||++++++.+.+. .|||||.+|.+
T Consensus 159 t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~~pv~vGfGI~~~e~~~~~~~-~gADgvVVGSa 237 (267)
T 3vnd_A 159 ADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIK-AGAAGAISGSA 237 (267)
T ss_dssp CCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTTCCCEEECSSCCSHHHHHHHHH-TTCSEEEECHH
T ss_pred CCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCCEEEECHH
Confidence 011121 1357889999988999999999999999997786 79999999998
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 238 iv~ 240 (267)
T 3vnd_A 238 VVK 240 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.4e-06 Score=74.55 Aligned_cols=104 Identities=12% Similarity=0.182 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. |. . ++.+|+..+++++.++
T Consensus 171 ~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~~~~~~~~l~~~~~ 240 (397)
T 2qde_A 171 PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKIE-------QP--L-PAWDLDGMARLRGKVA 240 (397)
T ss_dssp CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------CC--S-CTTCHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEEE-------CC--C-ChhhHHHHHHHHhhCC
Confidence 5677789999999886 689999999899999999999999999999885 21 1 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||++.+.+.+++++.++++...+|.|++--.-.+.
T Consensus 241 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GG 276 (397)
T 2qde_A 241 TPIYADESAQELHDLLAIINKGAADGLMIKTQKAGG 276 (397)
T ss_dssp SCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTS
T ss_pred CCEEEeCCcCCHHHHHHHHHcCCCCEEEEeccccCC
Confidence 999999999999999999998889999985444443
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-06 Score=74.87 Aligned_cols=98 Identities=11% Similarity=0.085 Sum_probs=86.0
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. | .. ++.+|+..+++++.++
T Consensus 202 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 271 (398)
T 2pp0_A 202 NCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIE-------E--PL-DAYDIEGHAQLAAALD 271 (398)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCceee-------C--CC-ChhhHHHHHHHHhhCC
Confidence 4677889999999886 689999999899999999999999999999885 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||++.+.+.+++++.++++...+|.|++-
T Consensus 272 iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 272 TPIATGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999999998889999873
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.7e-06 Score=72.74 Aligned_cols=97 Identities=8% Similarity=0.082 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~--~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++...++++++++++ ++++.+..+-+|+.++++++++.+++ .|+.+|. |. . .+.+|+..+++++.
T Consensus 172 ~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~iE-------qP--~-~~~~~~~~~~l~~~ 241 (389)
T 2oz8_A 172 DFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWVE-------DP--I-LRHDHDGLRTLRHA 241 (389)
T ss_dssp SHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEEE-------SC--B-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEEe-------CC--C-CCcCHHHHHHHHhh
Confidence 5677889999999987 68999999989999999999999999 7787774 21 2 24589999999999
Q ss_pred C-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 79 L-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 79 ~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+ ++||++.+.+ +++++.++++...||.|++.
T Consensus 242 ~~~iPIa~dE~~-~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 242 VTWTQINSGEYL-DLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp CCSSEEEECTTC-CHHHHHHHHHTTCCSEEEEC
T ss_pred CCCCCEEeCCCC-CHHHHHHHHHcCCCCEEEEC
Confidence 9 9999999999 99999999998889999997
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=73.46 Aligned_cols=78 Identities=10% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHHHHHcCCCEEEEecCCCCC-cCCCCCcccHHHHHHHHhh--CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~-~~~~~~~~~~~~i~~i~~~--~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+....+.|+|+|.+.+..... +... .+..++.++++++. .++||++-||| +++++.++++ +|+|||.+|++++.
T Consensus 148 a~~A~~~GaDyI~vgpvf~T~tK~~~-~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~-aGa~gvav~sai~~ 224 (243)
T 3o63_A 148 VAAAAAGDADYFCVGPCWPTPTKPGR-AAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLD-AGARRIVVVRAITS 224 (243)
T ss_dssp HHHHHHSSCSEEEECCSSCCCC------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHH-TTCCCEEESHHHHT
T ss_pred HHHHhhCCCCEEEEcCccCCCCCCCc-chhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHH-cCCCEEEEeHHHhC
Confidence 556677899999998753322 1122 35679999999886 58999999999 8999999886 89999999999988
Q ss_pred CCcc
Q 026945 116 NPAL 119 (230)
Q Consensus 116 nP~l 119 (230)
.++.
T Consensus 225 a~dp 228 (243)
T 3o63_A 225 ADDP 228 (243)
T ss_dssp CSSH
T ss_pred CCCH
Confidence 6654
|
| >3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-06 Score=75.39 Aligned_cols=94 Identities=10% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+...++++++++++ ++++.+...-+|+.++++++++.|++.|+.+|.. +..+++..+++++.+++|
T Consensus 197 ~~~~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE~------------P~~d~~~~~~l~~~~~iP 264 (409)
T 3go2_A 197 RNLRAHLEALRDGAGPDVEILLDLNFNAKPEGYLKILRELADFDLFWVEI------------DSYSPQGLAYVRNHSPHP 264 (409)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCCSEEEC------------CCSCHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCeEEEe------------CcCCHHHHHHHHhhCCCC
Confidence 45678899999886 6899999999999999999999999999999982 124889999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|++.+.+.+++++.++++...+|.|++=
T Consensus 265 Ia~dE~~~~~~~~~~~i~~~~~d~v~~k 292 (409)
T 3go2_A 265 ISSCETLFGIREFKPFFDANAVDVAIVD 292 (409)
T ss_dssp EEECTTCCHHHHHHHHHHTTCCSEEEEC
T ss_pred EEeCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 9999999999999999987779998874
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=98.27 E-value=6e-06 Score=74.87 Aligned_cols=102 Identities=9% Similarity=-0.019 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 213 ~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai~~~~~Le~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 282 (412)
T 3stp_A 213 MRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAKRMLPKLAPYEPRWLE-------E--PV-IADDVAGYAELNAMNIV 282 (412)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHhCCCC
Confidence 467788999999987 689999999999999999999999999999996 2 11 24489999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.+.+.++.++.++++...+|.|++--+-.+
T Consensus 283 PIa~dE~~~~~~~~~~li~~~a~D~v~ik~~~~G 316 (412)
T 3stp_A 283 PISGGEHEFSVIGCAELINRKAVSVLQYDTNRVG 316 (412)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHT
T ss_pred CEEeCCCCCCHHHHHHHHHcCCCCEEecChhhcC
Confidence 9999999999999999999778999987544333
|
| >3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.4e-06 Score=74.63 Aligned_cols=104 Identities=13% Similarity=0.030 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++++.+..+-+| +.++++++++.+++.|+++|. | .. ++.+++..+++++.+
T Consensus 182 ~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~~~~~~~~l~~~~ 251 (394)
T 3mqt_A 182 SDKEIVAYLRELREVIGWDMDMMVDCLYRWTDWQKARWTFRQLEDIDLYFIE-------A--CL-QHDDLIGHQKLAAAI 251 (394)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCSCHHHHHHHHHHTGGGCCSEEE-------S--CS-CTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHHhhcCCeEEE-------C--CC-CcccHHHHHHHHhhC
Confidence 5777889999999986 689999999999 999999999999999999996 2 11 244899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++||++.+.+.+++++.++++...+|.|.+--+-.+.
T Consensus 252 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GG 288 (394)
T 3mqt_A 252 NTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGG 288 (394)
T ss_dssp SSEEEECTTCCHHHHHHHHHHHHCCSEECCCTTTSSC
T ss_pred CCCEEeCCCcCCHHHHHHHHHcCCCCeEecCccccCC
Confidence 9999999999999999999998889999875443333
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=71.70 Aligned_cols=111 Identities=12% Similarity=0.183 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHhhc-CCceEEEEECCCCCh-HHHHHHHHHHHHcCCCEEEEecCCCC-----------------------
Q 026945 4 LPLVKSLVEKLALN-LNVPVSCKIRVFPNL-QDTIKYAKMLEDAGCSLLAVHGRTRD----------------------- 58 (230)
Q Consensus 4 p~~~~eiv~~v~~~-~~~pvsvKiR~g~~~-~~~~~~a~~l~~~G~~~i~vh~rt~~----------------------- 58 (230)
.+.+.++++++++. .++|+.+-.-..+-. .....|++.+.++|+|.+.+..-..+
T Consensus 81 ~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~ 160 (271)
T 3nav_A 81 PDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPT 160 (271)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 45677899999887 789998743211000 12345677777777777666322110
Q ss_pred ---Cc-----------------CCCCCc------ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 59 ---EK-----------------DGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 59 ---~~-----------------~~~~~~------~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+ .+.+|. ...+.++++++.+++||++.|||++++++.+.+. .|||||.+|.+
T Consensus 161 t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGIst~e~~~~~~~-~gADgvIVGSA 239 (271)
T 3nav_A 161 ASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIE-AGAAGAISGSA 239 (271)
T ss_dssp CCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTTCCCEEECSSCCSHHHHHHHHH-TTCSEEEESHH
T ss_pred CCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH-cCCCEEEECHH
Confidence 00 011221 1246788999988999999999999999997786 79999999998
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 240 iv~ 242 (271)
T 3nav_A 240 VVK 242 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 873
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.3e-06 Score=74.14 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++++.+..+-+|+ .+++.++++.+++.|+.+|. | .. ++.+++..+++++.+
T Consensus 175 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~ 244 (374)
T 3sjn_A 175 DPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWIE-------E--PV-LADSLISYEKLSRQV 244 (374)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEEE-------C--SS-CTTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEEE-------C--CC-CcccHHHHHHHHhhC
Confidence 5788889999999986 6899999999999 99999999999999999996 2 11 244899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++.+.+.+++++.++++...+|.|++-
T Consensus 245 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 245 SQKIAGGESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp SSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred CCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 9999999999999999999998889998873
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=75.42 Aligned_cols=97 Identities=13% Similarity=0.174 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. + .. ++.+|+..+++++.++
T Consensus 200 ~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~--P~-~~~~~~~~~~l~~~~~ 269 (410)
T 2gl5_A 200 QLKMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE-------E--PI-HPLNSDNMQKVSRSTT 269 (410)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------C--SS-CSSCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCeEE-------C--CC-ChhhHHHHHHHHhhCC
Confidence 3467789999999876 689999999899999999999999999999876 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||++.+.+.+++++.++++...||.|++
T Consensus 270 iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 298 (410)
T 2gl5_A 270 IPIATGERSYTRWGYRELLEKQSIAVAQP 298 (410)
T ss_dssp SCEEECTTCCTTHHHHHHHHTTCCSEECC
T ss_pred CCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 99999999999999999999778999887
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-05 Score=67.85 Aligned_cols=109 Identities=16% Similarity=0.213 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhc-CCceEEEEECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCc--------------------
Q 026945 5 PLVKSLVEKLALN-LNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEK-------------------- 60 (230)
Q Consensus 5 ~~~~eiv~~v~~~-~~~pvsvKiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~-------------------- 60 (230)
+...++++++++. +++||.+=.. ++. .....+++.+.++|++.+++|.-+.++.
T Consensus 79 ~~~~~~v~~ir~~~~~~Pv~lm~y--~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p 156 (268)
T 1qop_A 79 AQCFEMLAIIREKHPTIPIGLLMY--ANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPP 156 (268)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEC--HHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEc--ccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 3455889999988 7899866111 111 1235788888888999888875431100
Q ss_pred -----------------------CCCCCc------ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 61 -----------------------DGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 61 -----------------------~~~~~~------~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+++|. ...+.++++++..++||++.|||+|++++.+++. .|||+|++|+
T Consensus 157 ~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~-agAD~vVVGS 235 (268)
T 1qop_A 157 NADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVR-AGAAGAISGS 235 (268)
T ss_dssp TCCHHHHHHHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTTCCCEEEESSCCSHHHHHHHHH-TTCSEEEECH
T ss_pred CCCHHHHHHHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhccCCcEEEECCCCCHHHHHHHHH-cCCCEEEECh
Confidence 011121 1368899999988999999999999999999886 7999999999
Q ss_pred hhhhC
Q 026945 112 SLLEN 116 (230)
Q Consensus 112 ~~l~n 116 (230)
++...
T Consensus 236 ai~~~ 240 (268)
T 1qop_A 236 AIVKI 240 (268)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 87654
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.26 E-value=2.2e-05 Score=66.92 Aligned_cols=103 Identities=15% Similarity=0.179 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhc---CCceEEEEECC-CC------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH
Q 026945 6 LVKSLVEKLALN---LNVPVSCKIRV-FP------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 6 ~~~eiv~~v~~~---~~~pvsvKiR~-g~------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i 75 (230)
.+.+-++++++. .++|+.+=..+ |. +.+.....++...++|+|+|-+. +. .+.+.++++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~--~~---------~~~e~~~~~ 190 (263)
T 1w8s_A 122 KMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIK--YT---------GDPKTFSWA 190 (263)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEE--CC---------SSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEc--CC---------CCHHHHHHH
Confidence 344444444433 37888765544 11 33445556788999999999876 11 145888999
Q ss_pred HhhCCc-cEEEcCCCC--CHHHHHHHHH---hhCCcEEEEehhhhhCCcc
Q 026945 76 KNALRI-PVLANGNVR--HMEDVQKCLE---ETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 76 ~~~~~i-pvi~nGgI~--s~~da~~~l~---~~gadgVmigR~~l~nP~l 119 (230)
++.+++ ||++.|||+ +.+++.+.+. +.|++|+.+||.++..|+.
T Consensus 191 ~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp 240 (263)
T 1w8s_A 191 VKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDA 240 (263)
T ss_dssp HHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTH
T ss_pred HHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCH
Confidence 888887 999999999 9999988773 3899999999999988764
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-06 Score=75.11 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. + .. ++.+|+..+++++.+++
T Consensus 182 ~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE-------~--P~-~~~~~~~~~~l~~~~~i 251 (392)
T 2poz_A 182 IELAYRRVKAVRDAAGPEIELMVDLSGGLTTDETIRFCRKIGELDICFVE-------E--PC-DPFDNGALKVISEQIPL 251 (392)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------C--CS-CTTCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHhhCCC
Confidence 467789999999876 689999999899999999999999999999885 2 11 24589999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++.+.+.|++++.++++...+|.|++
T Consensus 252 pIa~dE~~~~~~~~~~~i~~~~~d~v~i 279 (392)
T 2poz_A 252 PIAVGERVYTRFGFRKIFELQACGIIQP 279 (392)
T ss_dssp CEEECTTCCHHHHHHHHHTTTCCSEECC
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 9999999999999999998778999887
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-06 Score=75.35 Aligned_cols=97 Identities=15% Similarity=0.187 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. + .. ++.+|+..+++++.+++
T Consensus 192 ~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~--P~-~~~d~~~~~~l~~~~~i 261 (403)
T 2ox4_A 192 IKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSAIQFAKAIEEFNIFFYE-------E--IN-TPLNPRLLKEAKKKIDI 261 (403)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------C--CS-CTTSTHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEe-------C--CC-ChhhHHHHHHHHHhCCC
Confidence 466789999999876 699999999899999999999999999999885 2 11 24589999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++.+.+.|++++.++++...+|.|++-
T Consensus 262 PIa~dE~~~~~~~~~~~i~~~~~d~v~ik 290 (403)
T 2ox4_A 262 PLASGERIYSRWGFLPFLEDRSIDVIQPD 290 (403)
T ss_dssp CEEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 99999999999999999997789999873
|
| >3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A | Back alignment and structure |
|---|
Probab=98.24 E-value=5.5e-06 Score=74.75 Aligned_cols=105 Identities=7% Similarity=0.017 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 184 ~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~~i 253 (401)
T 3sbf_A 184 MDNTLTMFKSLREKYGNQFHILHDVHERLFPNQAIQFAKEVEQYKPYFIE-------D--IL-PPNQTEWLDNIRSQSSV 253 (401)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------C--SS-CTTCGGGHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-ChhHHHHHHHHHhhCCC
Confidence 467788999999987 689999999999999999999999999999986 2 11 23478889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||++++.+.+++++.++++...+|.|++--+-.+...
T Consensus 254 PIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 290 (401)
T 3sbf_A 254 SLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGIT 290 (401)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHH
T ss_pred CEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHH
Confidence 9999999999999999999778999988655555444
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=71.51 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.++.+.+.|+++|...+...... .+..+++.++++++..++||++.|||.+++++.++++ .|||||.+|++++..
T Consensus 138 ~~a~~~~~~gad~v~~~~~~~Gt~---~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~-~GAdgViVGSAi~~a 213 (264)
T 1xm3_A 138 VLARKLEELGVHAIMPGASPIGSG---QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADGVLLNTAVSGA 213 (264)
T ss_dssp HHHHHHHHHTCSCBEECSSSTTCC---CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTS
T ss_pred HHHHHHHHhCCCEEEECCcccCCC---CCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHH-cCCCEEEEcHHHhCC
Confidence 346677778888873312211111 1223578999999988999999999999999999987 899999999998865
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
+.
T Consensus 214 ~d 215 (264)
T 1xm3_A 214 DD 215 (264)
T ss_dssp SS
T ss_pred CC
Confidence 44
|
| >3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A | Back alignment and structure |
|---|
Probab=98.24 E-value=6.5e-06 Score=74.45 Aligned_cols=100 Identities=13% Similarity=0.062 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 161 ~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 230 (405)
T 3rr1_A 161 VDAAVARVAEIRSAFGNTVEFGLDFHGRVSAPMAKVLIKELEPYRPLFIE-------E--PV-LAEQAETYARLAAHTHL 230 (405)
T ss_dssp HHHHHHHHHHHHHTTGGGSEEEEECCSCBCHHHHHHHHHHHGGGCCSCEE-------C--SS-CCSSTHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHhCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHhcCCC
Confidence 456788999999987 689999999999999999999999999999986 2 11 24578999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
||++.+.+.++.++.++++...+|.|++--+-
T Consensus 231 PIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~ 262 (405)
T 3rr1_A 231 PIAAGERMFSRFDFKRVLEAGGVSILQPDLSH 262 (405)
T ss_dssp CEEECTTCCSHHHHHHHHHHCCCSEECCBTTT
T ss_pred CEEecCCcCCHHHHHHHHHHhCCCeEEEChhh
Confidence 99999999999999999988889999875433
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.6e-06 Score=72.20 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.++++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 165 ~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 234 (354)
T 3jva_A 165 GIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVE-------Q--PV-KRRDLEGLKYVTSQVN 234 (354)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTSCEEEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-ChhhHHHHHHHHHhCC
Confidence 4566678899999876 689999999999999999999999999999996 2 11 2448999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||++.+.+.+++++.++++...+|.|++--+-.+...
T Consensus 235 iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit 272 (354)
T 3jva_A 235 TTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIH 272 (354)
T ss_dssp SEEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH
T ss_pred CCEEEcCCcCCHHHHHHHHHcCCCCEEEECchhcCCHH
Confidence 99999999999999999999888999999655555443
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-06 Score=74.45 Aligned_cols=96 Identities=17% Similarity=0.251 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. + .. .+.+|+..+++++.+++
T Consensus 198 ~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------~--P~-~~~~~~~~~~l~~~~~i 267 (407)
T 2o56_A 198 LRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSAIQFGRMIEELGIFYYE-------E--PV-MPLNPAQMKQVADKVNI 267 (407)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSCEE-------C--SS-CSSSHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------C--CC-ChhhHHHHHHHHHhCCC
Confidence 466789999999876 689999999899999999999999999999886 2 11 24589999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++.+.+.+++++.++++...+|.|++
T Consensus 268 PIa~dE~~~~~~~~~~~i~~~~~d~v~i 295 (407)
T 2o56_A 268 PLAAGERIYWRWGYRPFLENGSLSVIQP 295 (407)
T ss_dssp CEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred CEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 9999999999999999998778999887
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=73.83 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=60.2
Q ss_pred HHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 41 MLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 41 ~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.+.|+++|.++.|.... ...|++...++.+.+ ++|+++.|||+|++|+.++.+ |+|||.+|++++.
T Consensus 169 ~a~~~gad~IGvn~~~l~~-----~~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~--Ga~gvlVGsAl~~ 241 (254)
T 1vc4_A 169 IALEAGAEVLGINNRDLAT-----LHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEG--LFDAVLIGTSLMR 241 (254)
T ss_dssp HHHHHTCSEEEEESBCTTT-----CCBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT--TCSEEEECHHHHT
T ss_pred HHHHcCCCEEEEccccCcC-----CCCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHHHHHHHc--CCCEEEEeHHHcC
Confidence 4456678888888876431 256777777777766 789999999999999999885 9999999999999
Q ss_pred CCccccch
Q 026945 116 NPALFAGF 123 (230)
Q Consensus 116 nP~lf~~~ 123 (230)
.++.-..+
T Consensus 242 ~~d~~~~~ 249 (254)
T 1vc4_A 242 APDLEAAL 249 (254)
T ss_dssp SSCHHHHH
T ss_pred CCCHHHHH
Confidence 88765543
|
| >3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=73.92 Aligned_cols=98 Identities=8% Similarity=-0.012 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++++.+..+-+| +.++++++++.+++.|+++|. | .. ++.+++..+++++.+
T Consensus 187 ~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~ 256 (394)
T 3mkc_A 187 STKEVAYYLRELRGILGHDTDMMVDYLYRFTDWYEVARLLNSIEDLELYFAE-------A--TL-QHDDLSGHAKLVENT 256 (394)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCHHHHHHHHHHTGGGCCSEEE-------S--CS-CTTCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCHHHHHHHHHHhhhcCCeEEE-------C--CC-CchhHHHHHHHHhhC
Confidence 5777889999999987 689999999999 999999999999999999986 2 11 244899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++.+.+.+++++.++++...+|.|++-
T Consensus 257 ~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 287 (394)
T 3mkc_A 257 RSRICGAEMSTTRFEAEEWITKGKVHLLQSD 287 (394)
T ss_dssp SSCBEECTTCCHHHHHHHHHHTTCCSEECCC
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCeEecC
Confidence 9999999999999999999987789998874
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=69.96 Aligned_cols=78 Identities=17% Similarity=0.304 Sum_probs=59.3
Q ss_pred HHHHHHcCCCEEEEecCCCC-CcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 39 AKMLEDAGCSLLAVHGRTRD-EKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~-~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+..+.+.|+|+|.+..-... .+.++..+.+|+.++++++.++ +||++.|||+ ++++.++++ .|+|+|.+|++++..
T Consensus 129 ~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~-~Ga~gv~vgs~i~~~ 206 (227)
T 2tps_A 129 VKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQ-AGADGVSMISAISQA 206 (227)
T ss_dssp HHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHH-TTCSEEEESHHHHTS
T ss_pred HHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHH-cCCCEEEEhHHhhcC
Confidence 45567889999997432111 1111123467999999999888 9999999998 999999886 899999999999875
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
++
T Consensus 207 ~d 208 (227)
T 2tps_A 207 ED 208 (227)
T ss_dssp SC
T ss_pred CC
Confidence 43
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.7e-06 Score=73.09 Aligned_cols=98 Identities=17% Similarity=0.118 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+++|. |. . .+.+|+..+++++.++
T Consensus 192 ~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ 261 (392)
T 1tzz_A 192 PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYE-------EV--G-DPLDYALQAALAEFYP 261 (392)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------CC--S-CTTCHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCeec-------CC--C-ChhhHHHHHHHHhhCC
Confidence 4677889999999876 689999999899999999999999999999986 21 2 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhh----CCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEET----GCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~----gadgVmig 110 (230)
+||++.+.+.+++++.++++.. .+|.|++-
T Consensus 262 iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik 295 (392)
T 1tzz_A 262 GPMATGENLFSHQDARNLLRYGGMRPDRDWLQFD 295 (392)
T ss_dssp SCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCC
T ss_pred CCEEECCCCCCHHHHHHHHHcCCCccCCcEEEEC
Confidence 9999999999999999999876 69999884
|
| >3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.9e-06 Score=74.52 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.+++.++++.|++.|+.+|. | .. ++.+++..+++++.++
T Consensus 185 ~~~~d~e~v~avR~avG~d~~L~vDan~~~t~~~A~~~~~~Le~~~i~~iE-------e--P~-~~~~~~~~~~l~~~~~ 254 (433)
T 3rcy_A 185 DISLSVEFCRKIRAAVGDKADLLFGTHGQFTTAGAIRLGQAIEPYSPLWYE-------E--PV-PPDNVGAMAQVARAVR 254 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhcCCCEEE-------C--CC-ChhhHHHHHHHHhccC
Confidence 3566788999999886 689999998899999999999999999999996 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||++.+.+.|+.++.++++...+|.|++--+-.+...-
T Consensus 255 iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit~ 293 (433)
T 3rcy_A 255 IPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIWE 293 (433)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHHH
T ss_pred CCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHH
Confidence 999999999999999999997789999886555554443
|
| >4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.2e-06 Score=74.51 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.+++.++++.+++.|+++|. | .. .+.+++..+++++.+++
T Consensus 191 ~~~d~~~v~avR~a~G~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~~~~~~~~l~~~~~i 260 (404)
T 4e5t_A 191 LERSEAFCKQIRAAVGTKADLLFGTHGQFTVSGAKRLARRLEAYDPLWFE-------E--PI-PPEKPEDMAEVARYTSI 260 (404)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCcEEE-------C--CC-CcccHHHHHHHHhhCCC
Confidence 567788999999987 689999999899999999999999999999996 2 11 23489999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
||++.+.+.+++++.++++...+|.|++--+
T Consensus 261 PIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~ 291 (404)
T 4e5t_A 261 PVATGERLCTKYEFSRVLETGAASILQMNLG 291 (404)
T ss_dssp CEEECTTCCHHHHHHHHHHHTCCSEECCCTT
T ss_pred CEEeCCCcCCHHHHHHHHHhCCCCEEecCcc
Confidence 9999999999999999999778999877433
|
| >1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1e-05 Score=72.10 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 170 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~~ 239 (370)
T 1chr_A 170 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIE-------Q--PV-GRENTQALRRLSDNNR 239 (370)
T ss_dssp CSHHHHHHHHHHHHHSSTTCCEEEECTTCCCTTHHHHHTHHHHTTTEEEEE-------C--CS-CTTCHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHhhCC
Confidence 5677788999999987 489999999999999999999999999999886 2 12 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+||.+.+.+.+++++.++++..++|.|++--
T Consensus 240 iPia~dE~~~~~~~~~~~~~~~~~d~v~~k~ 270 (370)
T 1chr_A 240 VAIMADESLSTLASAFDLARDRSVDVFSLKL 270 (370)
T ss_dssp SEEEESSSCCSHHHHHHHHTTTSCSEEEECT
T ss_pred CCEEeCCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 9999999999999999999877899998843
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=98.20 E-value=6.8e-06 Score=73.57 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...++++++++++ ++++.+..+-+|+.+++.++++.+++. |+++|. |. . ++.+|+..+++++.+
T Consensus 166 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~ 235 (382)
T 2gdq_A 166 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLE-------EP--L-PFDQPQDYAMLRSRL 235 (382)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------CC--S-CSSCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCeEEE-------CC--C-CcccHHHHHHHHhhC
Confidence 5677889999999887 689999999999999999999999999 998875 21 1 245899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||++.+.+.+++++.++++...+|.|++
T Consensus 236 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 236 SVPVAGGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred CCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 999999999999999999998778999887
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-05 Score=71.79 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.++++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 173 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 242 (393)
T 4dwd_A 173 DIPGDIAKARAVRELLGPDAVIGFDANNGYSVGGAIRVGRALEDLGYSWFE-------E--PV-QHYHVGAMGEVAQRLD 242 (393)
T ss_dssp CHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHHHHTTCSEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------C--CC-CcccHHHHHHHHhhCC
Confidence 6788889999999986 689999999999999999999999999999996 2 12 2348999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+||++.+.+.+++++.++++.. +|.|++--
T Consensus 243 iPIa~dE~~~~~~~~~~~i~~~-~d~v~~k~ 272 (393)
T 4dwd_A 243 ITVSAGEQTYTLQALKDLILSG-VRMVQPDI 272 (393)
T ss_dssp SEEEBCTTCCSHHHHHHHHHHT-CCEECCCT
T ss_pred CCEEecCCcCCHHHHHHHHHcC-CCEEEeCc
Confidence 9999999999999999999866 99998743
|
| >3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.2e-06 Score=76.72 Aligned_cols=102 Identities=15% Similarity=0.074 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.|++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 203 ~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~i 272 (418)
T 3r4e_A 203 LNYVPKLFEELRKTYGFDHHLLHDGHHRYTPQEAANLGKMLEPYQLFWLE-------D--CT-PAENQEAFRLVRQHTVT 272 (418)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------S--CS-CCSSGGGGHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------C--CC-CccCHHHHHHHHhcCCC
Confidence 456788999999987 689999999999999999999999999999996 2 11 23478889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.+.+.+++++.++++...+|.|++--+-.+
T Consensus 273 PIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~G 306 (418)
T 3r4e_A 273 PLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAG 306 (418)
T ss_dssp CEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTT
T ss_pred CEEEcCCcCCHHHHHHHHHcCCCCeEecCccccC
Confidence 9999999999999999998777999887543333
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=72.16 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc-HHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~ 79 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.| ++..+++++.+
T Consensus 181 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~~l~~~~ 250 (392)
T 3ddm_A 181 DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWLE-------E--PL-RADRPAAEWAELAQAA 250 (392)
T ss_dssp CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTSCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEEE-------C--CC-CccchHHHHHHHHHhc
Confidence 4667788999999986 689999999999999999999999999999996 2 11 2447 89999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.+.+.+++++.++++...+|.|++
T Consensus 251 ~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~ 280 (392)
T 3ddm_A 251 PMPLAGGENIAGVAAFETALAARSLRVMQP 280 (392)
T ss_dssp SSCEEECTTCCSHHHHHHHHHHTCEEEECC
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999999999998777898877
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=8.5e-06 Score=68.74 Aligned_cols=77 Identities=12% Similarity=0.169 Sum_probs=61.4
Q ss_pred HHHHHHHcC----CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 38 YAKMLEDAG----CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 38 ~a~~l~~~G----~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++.+.+.| ..++-+-+ +. . +.+.+.++++++.+ ++||++.|||+|++++.++++ |||+|.+|.+
T Consensus 143 ~~~~~a~~g~~~~~~~VYl~s-~G-----~--~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~--gAd~VIVGSa 212 (240)
T 1viz_A 143 DIVAYARVSELLQLPIFYLEY-SG-----V--LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAE--HADVIVVGNA 212 (240)
T ss_dssp HHHHHHHHHHHTTCSEEEEEC-TT-----S--CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHT--TCSEEEECTH
T ss_pred HHHHHHHhCcccCCCEEEEeC-CC-----c--cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHh--CCCEEEEChH
Confidence 444444444 36665555 32 1 34789999999999 999999999999999999875 9999999999
Q ss_pred hhhCCc-cccchh
Q 026945 113 LLENPA-LFAGFR 124 (230)
Q Consensus 113 ~l~nP~-lf~~~~ 124 (230)
+..+|. ++++++
T Consensus 213 ~v~~~~~~~~~v~ 225 (240)
T 1viz_A 213 VYEDFDRALKTVA 225 (240)
T ss_dssp HHHCHHHHHTHHH
T ss_pred HHhCHHHHHHHHH
Confidence 999999 888764
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=72.04 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=84.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. + .. .+.+|+..+++++.++
T Consensus 192 ~~~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 261 (410)
T 2qq6_A 192 EHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIRFARAMEPFGLLWLE-------E--PT-PPENLDALAEVRRSTS 261 (410)
T ss_dssp HHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCeEE-------C--CC-ChhhHHHHHHHHhhCC
Confidence 3466789999999876 689999998889999999999999999999987 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||++.+.+.+++++.++++...+|.|++
T Consensus 262 iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 290 (410)
T 2qq6_A 262 TPICAGENVYTRFDFRELFAKRAVDYVMP 290 (410)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred CCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 99999999999999999998778999887
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3.9e-06 Score=78.82 Aligned_cols=92 Identities=11% Similarity=0.141 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-----------HHHHHHHHh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-----------EDVQKCLEE 101 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-----------~da~~~l~~ 101 (230)
.+.+++|+.+++.|++.|++-.-+.........+.+.+.++++++.+++||++.|||++. +++.++++
T Consensus 280 ~dp~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~- 358 (555)
T 1jvn_A 280 GKPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR- 358 (555)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH-
Confidence 478899999999999999998766532110111335889999999999999999999998 55999887
Q ss_pred hCCcEEEEehhhhh-------------CCccccchhh
Q 026945 102 TGCEGVLSAESLLE-------------NPALFAGFRT 125 (230)
Q Consensus 102 ~gadgVmigR~~l~-------------nP~lf~~~~~ 125 (230)
.|||.|.||.+++. ||.++.++..
T Consensus 359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~ 395 (555)
T 1jvn_A 359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISK 395 (555)
T ss_dssp HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHH
T ss_pred cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHH
Confidence 89999999999988 4788877653
|
| >3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.4e-06 Score=74.47 Aligned_cols=102 Identities=7% Similarity=0.093 Sum_probs=86.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+...-+|+.++++++++.|++.|+.+|. |- . ++.+++..+++++.+++
T Consensus 209 ~~~d~e~v~avR~avG~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~i 278 (424)
T 3v3w_A 209 LNYIPDVFAAVRKEFGPDIHLLHDVHHRLTPIEAARLGKALEPYHLFWME-------DA--V-PAENQESFKLIRQHTTT 278 (424)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------CC--S-CCSSTTHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------CC--C-ChHhHHHHHHHHhhCCC
Confidence 356788999999987 689999999999999999999999999999996 21 1 23478889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||++.+.+.+++++.++++...+|.|++--+-.+
T Consensus 279 PIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~G 312 (424)
T 3v3w_A 279 PLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAG 312 (424)
T ss_dssp CEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTT
T ss_pred CEEEccCcCCHHHHHHHHHcCCCCeEeecchhcC
Confidence 9999999999999999998777999987544433
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=73.08 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=84.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. |. . ++.+++..+++++.++
T Consensus 211 ~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~iE-------qP--~-~~~d~~~~~~l~~~~~ 280 (428)
T 3bjs_A 211 AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWLE-------EP--F-ACNDFASYREVAKITP 280 (428)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCEE-------CC--S-CTTCHHHHHHHTTTCS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------CC--C-CccCHHHHHHHHHhCC
Confidence 4567788999999876 689999999899999999999999999999885 21 1 2458999999999999
Q ss_pred -ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 -IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 -ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||++.+.+.+++++.++++...+|.|++
T Consensus 281 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 310 (428)
T 3bjs_A 281 LVPIAAGENHYTRFEFGQMLDAGAVQVWQP 310 (428)
T ss_dssp SSCEEECTTCCSHHHHHHHHTTCCEEEECC
T ss_pred CCcEEcCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 99999999999999999998777898877
|
| >4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.3e-05 Score=72.71 Aligned_cols=103 Identities=15% Similarity=0.086 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+...-+|+.+++.++++.+++.|+.+|. | .. .+.+++..+++++.+++
T Consensus 184 ~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 253 (412)
T 4e4u_A 184 LDRCELFCRRVREAVGSKADLLFGTHGQMVPSSAIRLAKRLEKYDPLWFE-------E--PV-PPGQEEAIAQVAKHTSI 253 (412)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEECCCSCBCHHHHHHHHHHHGGGCCSEEE-------C--CS-CSSCHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCcEEE-------C--CC-ChhhHHHHHHHHhhCCC
Confidence 566788999999987 689999999899999999999999999999997 2 11 23489999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
||++.+.+.+++++.++++...+|.|++--+-.+.
T Consensus 254 PIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GG 288 (412)
T 4e4u_A 254 PIATGERLTTKYEFHKLLQAGGASILQLNVARVGG 288 (412)
T ss_dssp CEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTS
T ss_pred CEEecCccCCHHHHHHHHHcCCCCEEEeCccccCC
Confidence 99999999999999999987779998874433333
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-05 Score=70.48 Aligned_cols=97 Identities=8% Similarity=0.079 Sum_probs=84.6
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 179 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 248 (372)
T 3tj4_A 179 DPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWFE-------E--PL-WYDDVTSHARLARNTS 248 (372)
T ss_dssp SHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------S--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEEE-------C--CC-CchhHHHHHHHHhhcC
Confidence 4667788999999987 689999999999999999999999999998886 2 12 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||++.+.+.+++++.++++...+|.|++
T Consensus 249 iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 277 (372)
T 3tj4_A 249 IPIALGEQLYTVDAFRSFIDAGAVAYVQP 277 (372)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred CCEEeCCCccCHHHHHHHHHcCCCCEEEe
Confidence 99999999999999999998778998876
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8.3e-06 Score=72.38 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+|+..+++++.++
T Consensus 166 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 235 (356)
T 3ro6_B 166 DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQELGIEFIE-------Q--PF-PAGRTDWLRALPKAIR 235 (356)
T ss_dssp CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHHHTTCCCEE-------C--CS-CTTCHHHHHTSCHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CCCcHHHHHHHHhcCC
Confidence 5677788899999886 689999999999999999999999999999996 2 12 2348999999998889
Q ss_pred ccEEEcCCCCCHHHHHHHHHhh-CCcEEEEehhhhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEET-GCEGVLSAESLLE 115 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~-gadgVmigR~~l~ 115 (230)
+||++++.+.+++++.++++.. ++|.|++--+-.+
T Consensus 236 iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~~~~G 271 (356)
T 3ro6_B 236 RRIAADESLLGPADAFALAAPPAACGIFNIKLMKCG 271 (356)
T ss_dssp HTEEESTTCCSHHHHHHHHSSSCSCSEEEECHHHHC
T ss_pred CCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcccccC
Confidence 9999999999999999999877 7999998554443
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=98.11 E-value=1e-05 Score=73.59 Aligned_cols=107 Identities=8% Similarity=0.007 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.+++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 205 ~~~d~e~v~avR~avG~d~~L~vDaN~~~~~~~A~~~~~~Le~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~i 274 (422)
T 3tji_A 205 MSNTVEMFHALREKYGWKLHILHDVHERLFPQQAVQLAKQLEPFQPYFIE-------D--IL-PPQQSAWLEQVRQQSCV 274 (422)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C--CS-CGGGGGGHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCeEE-------C--CC-ChhhHHHHHHHHhhCCC
Confidence 456788899999986 689999999999999999999999999999996 2 11 24578889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
||++.+.+.+++++.++++...+|.|++--+-.+...-+
T Consensus 275 PIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~ 313 (422)
T 3tji_A 275 PLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPA 313 (422)
T ss_dssp CEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHH
T ss_pred CEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHHHH
Confidence 999999999999999999977899998865555544433
|
| >3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.2e-05 Score=70.13 Aligned_cols=103 Identities=10% Similarity=0.102 Sum_probs=86.8
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.|++..+++++.++
T Consensus 173 ~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 242 (377)
T 3my9_A 173 PHAEELRILETMRGEFGERIDLRLDFNQALTPFGAMKILRDVDAFRPTFIE-------Q--PV-PRRHLDAMAGFAAALD 242 (377)
T ss_dssp CHHHHHHHHHHHHHHHGGGSEEEEECTTCCCTTTHHHHHHHHHTTCCSCEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCEEE-------C--CC-CccCHHHHHHHHHhCC
Confidence 3566678899999876 689999999999999999999999999999986 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+||.+.+.+.++.++.++++...+|.|++--+-.+
T Consensus 243 ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 277 (377)
T 3my9_A 243 TPILADESCFDAVDLMEVVRRQAADAISVKIMKCG 277 (377)
T ss_dssp SCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHT
T ss_pred CCEEECCccCCHHHHHHHHHcCCCCEEEecccccC
Confidence 99999999999999999998888999987543333
|
| >3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.8e-05 Score=69.85 Aligned_cols=98 Identities=10% Similarity=0.254 Sum_probs=85.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 201 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 270 (390)
T 3ugv_A 201 DPAVDIETAEAVWDAVGRDTALMVDFNQGLDMAEAMHRTRQIDDLGLEWIE-------E--PV-VYDNFDGYAQLRHDLK 270 (390)
T ss_dssp SHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEE-------C--CC-CcccHHHHHHHHHhcC
Confidence 5677788899999886 689999999999999999999999999999996 2 11 2448999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||.+.+.+.++.++.++++...+|.|++-
T Consensus 271 iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik 300 (390)
T 3ugv_A 271 TPLMIGENFYGPREMHQALQAGACDLVMPD 300 (390)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred CCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 999999999999999999987779988763
|
| >3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.3e-05 Score=69.80 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=84.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 166 ~~~~d~~~v~avR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~~~~~~~~l~~~~~ 235 (368)
T 3q45_A 166 SKELDVERIRMIREAAGDSITLRIDANQGWSVETAIETLTLLEPYNIQHCE-------E--PV-SRNLYTALPKIRQACR 235 (368)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHHGGGCCSCEE-------C--CB-CGGGGGGHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCChHHHHHHHHHHhhcCCCEEE-------C--CC-ChhHHHHHHHHHhhCC
Confidence 4666778899999886 689999999899999999999999999999996 2 11 2447888999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||.+.+.+.+++++.++++...+|.|++-
T Consensus 236 iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k 265 (368)
T 3q45_A 236 IPIMADESCCNSFDAERLIQIQACDSFNLK 265 (368)
T ss_dssp SCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred CCEEEcCCcCCHHHHHHHHHcCCCCeEEec
Confidence 999999999999999999998889999874
|
| >3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=72.28 Aligned_cols=105 Identities=12% Similarity=0.077 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...++++++++++ ++++.+..+-+|+.++++++++.|++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 223 ~~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 292 (440)
T 3t6c_A 223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPINAIHMAKALEPYQLFFLE-------D--PV-APENTEWLKMLRQQSST 292 (440)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------C--SS-CGGGGGGHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCEEE-------C--CC-ChhhHHHHHHHHhhcCC
Confidence 356778899999987 689999999999999999999999999999996 2 11 24478889999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||.+.+.+.++.++.++++...+|.|++--+-.+...
T Consensus 293 PIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 329 (440)
T 3t6c_A 293 PIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGIT 329 (440)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHH
T ss_pred CEEeCcccCCHHHHHHHHHcCCccceeechhhhCCHH
Confidence 9999999999999999998778999988655554443
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=7.5e-06 Score=68.81 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=59.2
Q ss_pred HHHHHHHHcCC-----CEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 37 KYAKMLEDAGC-----SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 37 ~~a~~l~~~G~-----~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+.++.+.+.|. .++-+.+ +.. +.+.+.++++++.+ ++||++.|||+|++++.++++ |||+|.+|
T Consensus 149 e~~~~~a~~g~~~l~~~~Vyl~~-~G~-------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~--gAd~VIVG 218 (234)
T 2f6u_A 149 ELAASYALVGEKLFNLPIIYIEY-SGT-------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVG 218 (234)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TTS-------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEEC
T ss_pred HHHHHHHHhhhhhcCCCEEEEeC-CCC-------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh--CCCEEEEC
Confidence 44555555555 6666655 321 34789999999999 999999999999999999886 89999999
Q ss_pred hhhhhCCccc
Q 026945 111 ESLLENPALF 120 (230)
Q Consensus 111 R~~l~nP~lf 120 (230)
.++..+|.-+
T Consensus 219 Sa~v~~~~~~ 228 (234)
T 2f6u_A 219 NVIYEKGIDA 228 (234)
T ss_dssp HHHHHHCHHH
T ss_pred hHHHhCHHHH
Confidence 9999998643
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=66.61 Aligned_cols=82 Identities=11% Similarity=0.142 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+.....|....+ .|-.+|.+-. +. ..+ +.+.++++++.+ ++|++..|||+|++++.++.+ |||+|.+|
T Consensus 145 e~iaa~A~~a~~~~g~~~vY~e~-sG-----~~g--~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~--gAD~VVVG 214 (235)
T 3w01_A 145 EDLEAYAQMVNHMYRLPVMYIEY-SG-----IYG--DVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA--IADTIIVG 214 (235)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEC-TT-----SCC--CHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHT--TSSEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEec-CC-----CcC--CHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHc--CCCEEEEC
Confidence 344444443232 5778877755 32 112 689999999998 899999999999999998775 89999999
Q ss_pred hhhhhCCccccchh
Q 026945 111 ESLLENPALFAGFR 124 (230)
Q Consensus 111 R~~l~nP~lf~~~~ 124 (230)
.++..||..+.++-
T Consensus 215 Sai~~~~~~~~e~v 228 (235)
T 3w01_A 215 DIIYKDIKKALKTV 228 (235)
T ss_dssp THHHHCHHHHHHTT
T ss_pred CceecCHHHHHHHH
Confidence 99999999887653
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.1e-05 Score=69.42 Aligned_cols=97 Identities=12% Similarity=0.168 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.++
T Consensus 195 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 264 (383)
T 3toy_A 195 DLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARLADYDLTWIE-------E--PV-PQENLSGHAAVRERSE 264 (383)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHHHhhCCCEEE-------C--CC-CcchHHHHHHHHhhcC
Confidence 5677788999999986 689999999999999999999999999999986 2 11 2448999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.+.+.++.++.++++...+|.|++
T Consensus 265 iPIa~dE~~~~~~~~~~~i~~~a~d~v~i 293 (383)
T 3toy_A 265 IPIQAGENWWFPRGFAEAIAAGASDFIMP 293 (383)
T ss_dssp SCEEECTTCCHHHHHHHHHHHTCCSEECC
T ss_pred CCEEeCCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99999999999999999998777898865
|
| >3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A | Back alignment and structure |
|---|
Probab=98.06 E-value=8.3e-06 Score=74.18 Aligned_cols=102 Identities=14% Similarity=0.087 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+...++++++++++ ++++.+...-+|+.++++++++.|++.|+.+|. | .. ++.+++..+++++.+++|
T Consensus 211 ~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~iP 280 (425)
T 3vcn_A 211 NSVPKLFERAREVLGWDVHLLHDVHHRLTPIEAARLGKDLEPYRLFWLE-------D--SV-PAENQAGFRLIRQHTTTP 280 (425)
T ss_dssp TTTHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C--CS-CCSSTTHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-ChhhHHHHHHHHhcCCCC
Confidence 34578899999887 689999999999999999999999999999996 2 11 234788899999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|++.+.+.+++++.++++...+|.|++--+-.+.
T Consensus 281 Ia~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GG 314 (425)
T 3vcn_A 281 LAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGG 314 (425)
T ss_dssp EEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTH
T ss_pred EEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCC
Confidence 9999999999999999987779999875444433
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.9e-05 Score=69.16 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=81.8
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.-.++++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.+++||
T Consensus 170 ~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~iPI 239 (367)
T 3dg3_A 170 LDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREMADLDLLFAE-------E--LC-PADDVLSRRRLVGQLDMPF 239 (367)
T ss_dssp HHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHTTTSCCSCEE-------S--CS-CTTSHHHHHHHHHHCSSCE
T ss_pred hHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE-------C--CC-CcccHHHHHHHHHhCCCCE
Confidence 5567888898876 689999999999999999999999999999987 2 11 2357899999999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.+.+.+++++.++++...+|.|++
T Consensus 240 a~dE~~~~~~~~~~~i~~~~~d~v~~ 265 (367)
T 3dg3_A 240 IADESVPTPADVTREVLGGSATAISI 265 (367)
T ss_dssp EECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred EecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 99999999999999998778999887
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=67.47 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh-hCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN-ALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~-~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.+++.+++.|++.|---+..-- +..|-.+.+.++.+++ ..+ +|||+-|||.+++|+..+++ .|||||.+|.++.
T Consensus 136 ~~ak~l~~~G~~aVmPlg~pIG---sG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~Ame-LGAdgVlVgSAI~ 211 (268)
T 2htm_A 136 VLAKRLAALGTATVMPLAAPIG---SGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVME-LGLDAVLVNTAIA 211 (268)
T ss_dssp HHHHHHHHHTCSCBEEBSSSTT---TCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHH-TTCCEEEESHHHH
T ss_pred HHHHHHHhcCCCEEEecCccCc---CCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence 5666677777777643232111 1123346788999998 678 99999999999999999997 8999999999887
Q ss_pred h
Q 026945 115 E 115 (230)
Q Consensus 115 ~ 115 (230)
.
T Consensus 212 ~ 212 (268)
T 2htm_A 212 E 212 (268)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.7e-05 Score=68.39 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
|+...+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 182 ~~~~~~~v~avReavG~d~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 251 (388)
T 3tcs_A 182 PGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFE-------E--PC-PYWELAQTKQVTDALDI 251 (388)
T ss_dssp TTHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHHHTTCCEEE-------C--CS-CTTCHHHHHHHHHHCSS
T ss_pred hhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCeEEE-------C--CC-CccCHHHHHHHHHhcCC
Confidence 566778899999986 689999999999999999999999999999885 2 11 23489999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
||.+...+.|..++.++++...+|.|.+--+-.+.
T Consensus 252 PIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GG 286 (388)
T 3tcs_A 252 DVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGG 286 (388)
T ss_dssp CEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTS
T ss_pred CEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCC
Confidence 99999999999999999987789998875444333
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-06 Score=72.56 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|++.+++-.-+. .+.+.++++++.+++||...|||++. ++.+++ .|||-|.+|..
T Consensus 38 ~dp~~~A~~~~~~Ga~~l~vvDL~~---------~n~~~i~~i~~~~~~pv~vgGGir~~-~~~~~l--~Ga~~Viigs~ 105 (260)
T 2agk_A 38 HPSSYYAKLYKDRDVQGCHVIKLGP---------NNDDAAREALQESPQFLQVGGGINDT-NCLEWL--KWASKVIVTSW 105 (260)
T ss_dssp CCHHHHHHHHHHTTCTTCEEEEESS---------SCHHHHHHHHHHSTTTSEEESSCCTT-THHHHT--TTCSCEEECGG
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCC---------CCHHHHHHHHhcCCceEEEeCCCCHH-HHHHHh--cCCCEEEECcH
Confidence 4588999999999999999865432 46789999999999999999999987 999988 79999999999
Q ss_pred hhhC-----Cccccchh
Q 026945 113 LLEN-----PALFAGFR 124 (230)
Q Consensus 113 ~l~n-----P~lf~~~~ 124 (230)
++.| |.++.++-
T Consensus 106 a~~~~g~~~p~~~~~~~ 122 (260)
T 2agk_A 106 LFTKEGHFQLKRLERLT 122 (260)
T ss_dssp GBCTTCCBCHHHHHHHH
T ss_pred HHhhcCCCCHHHHHHHH
Confidence 9999 99887764
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-05 Score=65.88 Aligned_cols=108 Identities=16% Similarity=0.237 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChH---HHHHHHHHHHHcCCCEEEEecCCCC----------------------
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQ---DTIKYAKMLEDAGCSLLAVHGRTRD---------------------- 58 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~---~~~~~a~~l~~~G~~~i~vh~rt~~---------------------- 58 (230)
+.+.++++++++.+ ++|+.+ + ..++.- ....+++.+.++|++.++++.-..+
T Consensus 79 ~~~~~~v~~ir~~~~~~Pi~~-m-~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p 156 (262)
T 2ekc_A 79 EDVLELSETLRKEFPDIPFLL-M-TYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAP 156 (262)
T ss_dssp HHHHHHHHHHHHHCTTSCEEE-E-CCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECT
T ss_pred HHHHHHHHHHHhhcCCCCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 45668899999888 899977 3 111111 1246677777777777766432110
Q ss_pred ----Cc-----------------CCCCC---c---c-cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 59 ----EK-----------------DGKKF---R---A-DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 59 ----~~-----------------~~~~~---~---~-~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+ .+.+| + . ..+.++++++.+++||++.|||.|++++.+ +. .|||+|++|
T Consensus 157 ~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~~~pv~vG~GI~t~e~~~~-~~-~gADgvIVG 234 (262)
T 2ekc_A 157 TSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELCDKPVVVGFGVSKKEHARE-IG-SFADGVVVG 234 (262)
T ss_dssp TCCHHHHHHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHCCSCEEEESSCCSHHHHHH-HH-TTSSEEEEC
T ss_pred CCCHHHHHHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhcCCCEEEeCCCCCHHHHHH-HH-cCCCEEEEC
Confidence 00 01111 1 1 236788999988999999999999999999 54 589999999
Q ss_pred hhhhhC
Q 026945 111 ESLLEN 116 (230)
Q Consensus 111 R~~l~n 116 (230)
+++...
T Consensus 235 Sai~~~ 240 (262)
T 2ekc_A 235 SALVKL 240 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998865
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.01 E-value=8.6e-06 Score=66.99 Aligned_cols=76 Identities=12% Similarity=0.070 Sum_probs=57.1
Q ss_pred HHHHHHcCCCEEEEecCCCCC-cCCCCCcccHHHHHHHHhh--CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 39 AKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNA--LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~-~~~~~~~~~~~~i~~i~~~--~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+...+ .|+|+|.+.+-.... +.++.++.+|+.++++++. .++||++.|||+ ++++.++++ +|++||.+++++..
T Consensus 101 ~~~A~-~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~-~Ga~gVav~s~i~~ 177 (210)
T 3ceu_A 101 VKNRK-HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKD-FGFGGAVVLGDLWN 177 (210)
T ss_dssp HHTTG-GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHH-TTCSEEEESHHHHT
T ss_pred HHHHh-hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHH-hCCCEEEEhHHhHc
Confidence 44456 899999987653221 2222235689999999887 689999999997 899999997 99999999999986
Q ss_pred CC
Q 026945 116 NP 117 (230)
Q Consensus 116 nP 117 (230)
.+
T Consensus 178 ~~ 179 (210)
T 3ceu_A 178 KF 179 (210)
T ss_dssp TC
T ss_pred CC
Confidence 44
|
| >3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A | Back alignment and structure |
|---|
Probab=98.01 E-value=6.7e-05 Score=67.25 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=86.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++.|+.+|. | .. ++.|++..+++++.+++
T Consensus 175 ~~~~d~~~v~avR~a~~~~~l~vDan~~~~~~~A~~~~~~L~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~i 244 (385)
T 3i6e_A 175 DHAFDIMRLELIARDFPEFRVRVDYNQGLEIDEAVPRVLDVAQFQPDFIE-------Q--PV-RAHHFELMARLRGLTDV 244 (385)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHHHHHTTCCSCEE-------C--CS-CTTCHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C--CC-CcccHHHHHHHHHhCCC
Confidence 3556678888888876 688999999999999999999999999999986 2 11 24589999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
||.+...+.++.++.++++...+|.|++--+-.
T Consensus 245 PIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~ 277 (385)
T 3i6e_A 245 PLLADESVYGPEDMVRAAHEGICDGVSIKIMKS 277 (385)
T ss_dssp CEEESTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CEEEeCCcCCHHHHHHHHHcCCCCEEEeccccc
Confidence 999999999999999999888899998854333
|
| >4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.5e-05 Score=72.53 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+..++++++++++ ++++.+...-+|+.+++.++++.+++.|+.+|. | .. ++.+++..+++++.+++||
T Consensus 213 ~~~e~v~avR~a~G~d~~L~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~iPI 282 (426)
T 4e4f_A 213 FTPKLFEAVRDKFGFNEHLLHDMHHRLTPIEAARFGKSVEDYRLFWME-------D--PT-PAENQACFRLIRQHTVTPI 282 (426)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHTGGGCCSEEE-------C--CS-CCSSGGGGHHHHTTCCSCE
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------C--CC-ChHHHHHHHHHHhcCCCCE
Confidence 4568899999987 689999999999999999999999999999996 2 11 2347888899999999999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++.+.+.+++++.++++...+|.|++--
T Consensus 283 a~dE~~~~~~~~~~~i~~ga~d~v~~k~ 310 (426)
T 4e4f_A 283 AVGEVFNSIWDCKQLIEEQLIDYIRTTI 310 (426)
T ss_dssp EECTTCCSGGGTHHHHHTTCCSEECCCT
T ss_pred EeCCCcCCHHHHHHHHHcCCCCEEEeCc
Confidence 9999999999999999877899987643
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-05 Score=70.35 Aligned_cols=98 Identities=9% Similarity=0.104 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+++...++++++++++ ++++.+...-+|+.++++++++.+++.|+++|. | .. .+.+++..+++++.+
T Consensus 224 ~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 293 (441)
T 2hxt_A 224 NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIE-------E--PT-SPDDVLGHAAIRQGIT 293 (441)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEE-------C--CS-CTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeee-------C--CC-CHHHHHHHHHHHhhCC
Confidence 4567788999999876 689999988899999999999999999999885 2 11 245899999999987
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++||++.+.+.+++++.++++...+|.|++-
T Consensus 294 ~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 294 PVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp TSCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred CCCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 6999999999999999999988889998873
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00013 Score=64.08 Aligned_cols=103 Identities=19% Similarity=0.187 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCC--EEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS--LLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~--~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...+++++++++- ++++.+...-+|+.++++++++.+++.|++ +|. | .. ++.+++..+++++.+
T Consensus 165 ~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~~~iE-------~--P~-~~~~~~~~~~l~~~~ 234 (345)
T 2zad_A 165 NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQKGIDIAVYE-------Q--PV-RREDIEGLKFVRFHS 234 (345)
T ss_dssp CHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHTTCCCSEEE-------C--CS-CTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCeeeee-------C--CC-CcccHHHHHHHHHhC
Confidence 4566678889998762 478888888889999999999999999999 875 2 12 245899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE--ehhhhh
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS--AESLLE 115 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi--gR~~l~ 115 (230)
++||++.+.+.+++++.++++...+|.|++ ++|-+.
T Consensus 235 ~ipia~dE~~~~~~~~~~~i~~~~~d~v~ik~~~GGit 272 (345)
T 2zad_A 235 PFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGIS 272 (345)
T ss_dssp SSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHHHH
T ss_pred CCCEEEeCCcCCHHHHHHHHHhCCCCEEEEecccccHH
Confidence 999999999999999999999878999998 554443
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.7e-05 Score=68.82 Aligned_cols=97 Identities=12% Similarity=0.177 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...+.++++++++ ++++.+...-+|+.+++.++++.|++.|+.+|. | + ..++.+++..+++++.+++
T Consensus 196 ~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------q-P-~~~~~~~~~~~~l~~~~~i 266 (410)
T 3dip_A 196 LKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALADYGVLWVE-------D-P-IAKMDNIPAVADLRRQTRA 266 (410)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGGGGTCSEEE-------C-C-BSCTTCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHHhcCCCEEE-------C-C-CCCcccHHHHHHHHhhCCC
Confidence 345678899999987 589999988899999999999999999999997 1 1 0023478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++.+.+.+++++.++++...+|.|.+
T Consensus 267 PIa~dE~~~~~~~~~~~l~~~~~d~v~~ 294 (410)
T 3dip_A 267 PICGGENLAGTRRFHEMLCADAIDFVML 294 (410)
T ss_dssp CEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCeEee
Confidence 9999999999999999998777999887
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-05 Score=63.83 Aligned_cols=107 Identities=14% Similarity=0.180 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCC-----------------------
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNL---QDTIKYAKMLEDAGCSLLAVHGRTRD----------------------- 58 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~----------------------- 58 (230)
+.+.++++++++.+++||.+ + ..++. .....|++.+.++|++.+.+-+-+.+
T Consensus 77 ~~~~~~v~~ir~~~~~Pii~-m-~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~ 154 (271)
T 1ujp_A 77 QGALELVREVRALTEKPLFL-M-TYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPT 154 (271)
T ss_dssp HHHHHHHHHHHHHCCSCEEE-E-CCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTT
T ss_pred HHHHHHHHHHHhcCCCCEEE-E-ecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCC
Confidence 45678899999888899887 3 11110 12356677777777776554221100
Q ss_pred ---C-----------------cCCCCC------cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 59 ---E-----------------KDGKKF------RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 59 ---~-----------------~~~~~~------~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
. ..+++| ....+.++++++..++||++.|||+|++++.++ .|||||++|.+
T Consensus 155 s~~eri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~---~~ADgVIVGSA 231 (271)
T 1ujp_A 155 STDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQA---AVADGVVVGSA 231 (271)
T ss_dssp CCHHHHHHHHTTCCSCEEEECC------------CCHHHHHHHHTTCCSCEEEESCCCSHHHHHHH---TTSSEEEECHH
T ss_pred CCHHHHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhcCCCEEEEcCCCCHHHHHHh---cCCCEEEEChH
Confidence 0 001111 123578999999999999999999999999996 58999999998
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
+...
T Consensus 232 i~~~ 235 (271)
T 1ujp_A 232 LVRA 235 (271)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8764
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.1e-05 Score=64.15 Aligned_cols=104 Identities=18% Similarity=0.189 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC---CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc---cHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---DWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g---~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~---~~~~i~~i~ 76 (230)
+.+.+.+-+.++++.++-|+ +|+=+- .+.++....++...++|+|+|--+.... .+++ +...++++.
T Consensus 156 ~~~~v~~eI~~V~~a~~~~~-lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf~------~~GAT~edv~lmr~~v 228 (288)
T 3oa3_A 156 RYTDVFQDIRAVRLAAKDAI-LKVILETSQLTADEIIAGCVLSSLAGADYVKTSTGFN------GPGASIENVSLMSAVC 228 (288)
T ss_dssp CHHHHHHHHHHHHHHTTTSE-EEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS------SCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCC-ceEEEECCCCCHHHHHHHHHHHHHcCCCEEEcCCCCC------CCCCCHHHHHHHHHHH
Confidence 56788888889988876553 665442 2456677788899999999997552211 1234 445555554
Q ss_pred hh--CCccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhh
Q 026945 77 NA--LRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 114 (230)
Q Consensus 77 ~~--~~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l 114 (230)
+. .++||.+.|||+|.+++.++++ .||+ |...|+.++
T Consensus 229 ~~~g~~v~VKAAGGIrt~edAl~mi~-aGA~RiGtS~g~~I~ 269 (288)
T 3oa3_A 229 DSLQSETRVKASGGIRTIEDCVKMVR-AGAERLGASAGVKIV 269 (288)
T ss_dssp HHSSSCCEEEEESSCCSHHHHHHHHH-TTCSEEEESCHHHHH
T ss_pred HHhCCCceEEEeCCCCCHHHHHHHHH-cCCceeehhhHHHHH
Confidence 42 4699999999999999999997 8999 556665554
|
| >3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-05 Score=66.42 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+..++.++++.+++.|+.+|. | .. ++.|++..+++++.++
T Consensus 176 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ 245 (382)
T 3dgb_A 176 EVDRDLAHVIAIKKALGDSASVRVDVNQAWDEAVALRACRILGGNGIDLIE-------Q--PI-SRNNRAGMVRLNASSP 245 (382)
T ss_dssp CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHTTTCCCEE-------C--CB-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCcCeee-------C--CC-CccCHHHHHHHHHhCC
Confidence 3566778899999876 488999999999999999999999999999885 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+||.+...+.+..++.++++...+|.|++--+-.+
T Consensus 246 ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~G 280 (382)
T 3dgb_A 246 APIMADESIECVEDAFNLAREGAASVFALKIAKNG 280 (382)
T ss_dssp SCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHT
T ss_pred CCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccC
Confidence 99999999999999999999888999998544433
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00012 Score=65.41 Aligned_cols=101 Identities=16% Similarity=0.223 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED--AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~--~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+++ .|+.+|. | .. ++.|++..+++++.
T Consensus 168 ~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~~~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~ 237 (379)
T 3r0u_A 168 DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEINKYSLNVEIIE-------Q--PV-KYYDIKAMAEITKF 237 (379)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHHTSCCCEEEEE-------C--CS-CTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHhhcCCCcEEEE-------C--CC-CcccHHHHHHHHhc
Confidence 4666778899999987 58999999999999999999999999 7788875 2 11 24579999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+++||.++..+.+..++.++++...+|.|.+--+-
T Consensus 238 ~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~ 272 (379)
T 3r0u_A 238 SNIPVVADESVFDAKDAERVIDEQACNMINIKLAK 272 (379)
T ss_dssp CSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccc
Confidence 99999999999999999999987779999885433
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00014 Score=60.28 Aligned_cols=104 Identities=11% Similarity=0.174 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~--G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.+.++.+++. ++.+.+-+....+ .+.++.+.+. ++|+|.+.+...........+..++.++++++.. ++|++
T Consensus 103 ~~~~~~i~~~-g~~igv~~~p~t~----~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~ 177 (228)
T 1h1y_A 103 QELIQSIKAK-GMRPGVSLRPGTP----VEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIE 177 (228)
T ss_dssp HHHHHHHHHT-TCEEEEEECTTSC----GGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHc-CCCEEEEEeCCCC----HHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEE
Confidence 5667777654 6666665543322 2334555565 8999988654332110011233466778888887 89999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.|||+. +++.++++ .|+|++.+|++++..|+
T Consensus 178 v~GGI~~-~ni~~~~~-aGaD~vvvGsai~~~~d 209 (228)
T 1h1y_A 178 VDGGLGP-STIDVAAS-AGANCIVAGSSIFGAAE 209 (228)
T ss_dssp EESSCST-TTHHHHHH-HTCCEEEESHHHHTSSC
T ss_pred EECCcCH-HHHHHHHH-cCCCEEEECHHHHCCCC
Confidence 9999976 88888876 79999999999988766
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=62.39 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=76.6
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECC--C-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRV--F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~--g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-+.++++.++ .|+ |+=+ + .+.++....++...++|+|+|--+... ..+++..+.++.+++.
T Consensus 141 ~~~~v~~eI~~v~~a~~~~~l--KVIlEt~~Lt~eei~~A~~ia~eaGADfVKTSTGf------~~~GAT~edV~lm~~~ 212 (260)
T 3r12_A 141 EWEYVYEDIRSVVESVKGKVV--KVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGF------GTGGATAEDVHLMKWI 212 (260)
T ss_dssp CHHHHHHHHHHHHHHTTTSEE--EEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSS------SSCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcE--EEEEeCCCCCHHHHHHHHHHHHHhCcCEEEcCCCC------CCCCCCHHHHHHHHHH
Confidence 56778888888888764 454 5433 2 245677888899999999999855211 1235677777777776
Q ss_pred C--CccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhhh
Q 026945 79 L--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 115 (230)
Q Consensus 79 ~--~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l~ 115 (230)
+ +++|-++|||+|.+++.++++ .||+ |...|+.++.
T Consensus 213 vg~~v~VKaAGGIrt~~~al~mi~-aGA~RiGtS~g~~I~~ 252 (260)
T 3r12_A 213 VGDEMGVKASGGIRTFEDAVKMIM-YGADRIGTSSGVKIVQ 252 (260)
T ss_dssp HCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESCHHHHHH
T ss_pred hCCCceEEEeCCCCCHHHHHHHHH-cCCceeecchHHHHHH
Confidence 5 599999999999999999997 8999 6666665553
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=4.4e-05 Score=67.73 Aligned_cols=94 Identities=11% Similarity=0.054 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+...++++++++++ ++++.+...-+|+.++ +++++.+++.|+++|. | .. .+.+|+..+++++.+++|
T Consensus 167 ~~~~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~iE-------~--P~-~~~~~~~~~~l~~~~~ip 235 (368)
T 1sjd_A 167 GWDVEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLLIE-------Q--PL-EEEDVLGHAELARRIQTP 235 (368)
T ss_dssp TBSHHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSEEE-------C--CS-CTTCHHHHHHHHTTCSSC
T ss_pred hhHHHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCeEe-------C--CC-ChhhHHHHHHHHHhCCCC
Confidence 34457788888776 5888888888899889 9999999999999886 2 12 245899999999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
|++.+.+.+++++.++++...+|.|++
T Consensus 236 Ia~dE~~~~~~~~~~~i~~~~~d~v~i 262 (368)
T 1sjd_A 236 ICLDESIVSARAAADAIKLGAVQIVNI 262 (368)
T ss_dssp EEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred EEECCCcCCHHHHHHHHHcCCCCEEEe
Confidence 999999999999999998778999988
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.6e-05 Score=63.56 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
|.+.+.+-+.++++.++- ..+|+=+ + .+.++....++...++|+|+|-.+.... .+++..+.++.+++.+
T Consensus 125 ~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt~eei~~a~~ia~~aGADfVKTSTGf~------~ggAt~~dv~lmr~~v 197 (239)
T 3ngj_A 125 KYDDVEKDVKAVVDASGK-ALTKVIIECCYLTNEEKVEVCKRCVAAGAEYVKTSTGFG------THGATPEDVKLMKDTV 197 (239)
T ss_dssp CHHHHHHHHHHHHHHHTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS------SCCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcC-CceEEEEecCCCCHHHHHHHHHHHHHHCcCEEECCCCCC------CCCCCHHHHHHHHHhh
Confidence 567778888888877641 2345422 1 2456777888889999999998653211 2456777777777665
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhhh
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 115 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l~ 115 (230)
+++|-++|||+|.+|+.++++ .||+ |+..|+.++.
T Consensus 198 g~~v~VKasGGIrt~~da~~~i~-aGA~riGtS~~~~I~~ 236 (239)
T 3ngj_A 198 GDKALVKAAGGIRTFDDAMKMIN-NGASRIGASAGIAILN 236 (239)
T ss_dssp GGGSEEEEESSCCSHHHHHHHHH-TTEEEEEESCHHHHHH
T ss_pred CCCceEEEeCCCCCHHHHHHHHH-hcccceecccHHHHHh
Confidence 589999999999999999996 8999 5555555443
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=64.74 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=40.2
Q ss_pred cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 68 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 68 ~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..+.++++++.+ ++||++.|||+ .+++.++++ .|+|+|.+|++++.
T Consensus 137 g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~-~Ga~~v~vGs~i~~ 183 (205)
T 1wa3_A 137 GPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFK-AGVLAVGVGSALVK 183 (205)
T ss_dssp HHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHH-HTCSCEEECHHHHC
T ss_pred CHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHH-CCCCEEEECccccC
Confidence 457778888877 79999999996 789999886 89999999999887
|
| >3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00018 Score=64.24 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=88.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+..+-+|+..++.++++.+++.|+.+|. | .. .+.|++..+++++.++
T Consensus 175 ~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 244 (381)
T 3fcp_A 175 ELATDLRHTRAIVEALGDRASIRVDVNQAWDAATGAKGCRELAAMGVDLIE-------Q--PV-SAHDNAALVRLSQQIE 244 (381)
T ss_dssp CHHHHHHHHHHHHHHTCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCSEEE-------C--CB-CTTCHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHhhcCcccee-------C--CC-CcccHHHHHHHHHhCC
Confidence 3567778899999987 488999999999999999999999999999985 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+||.+...+.+..++.++++..++|.|++--+-.+..
T Consensus 245 ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGi 281 (381)
T 3fcp_A 245 TAILADEAVATAYDGYQLAQQGFTGAYALKIAKAGGP 281 (381)
T ss_dssp SEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHTST
T ss_pred CCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCH
Confidence 9999999999999999999888899999855444443
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0001 Score=68.40 Aligned_cols=102 Identities=22% Similarity=0.232 Sum_probs=71.9
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec------CCCCCcCCCCCcccHHHHHHHHh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG------RTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~------rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.+.++.+++.. ++||.+---. +.+-++.|.++|+|.+-|-- -|+... + .|-+....|..+++
T Consensus 307 ~~v~~~i~~ik~~~p~~~viaGNVa------T~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~-G-vG~PQ~tAi~~~a~ 378 (556)
T 4af0_A 307 VYQIEFIKWIKQTYPKIDVIAGNVV------TREQAAQLIAAGADGLRIGMGSGSICITQEVM-A-VGRPQGTAVYAVAE 378 (556)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSTTBCCTTTC-C-SCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcceEEecccc------CHHHHHHHHHcCCCEEeecCCCCccccccccc-C-CCCcHHHHHHHHHH
Confidence 45666777777665 5666553321 34667788899999998842 233322 2 23445666665544
Q ss_pred ---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 78 ---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 78 ---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..++|||+-|||++.-|+.++|. .|||.||+|.-+-+
T Consensus 379 ~a~~~~vpvIADGGI~~sGDi~KAla-aGAd~VMlGsllAG 418 (556)
T 4af0_A 379 FASRFGIPCIADGGIGNIGHIAKALA-LGASAVMMGGLLAG 418 (556)
T ss_dssp HHGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred HHHHcCCCEEecCCcCcchHHHHHhh-cCCCEEEEchhhcc
Confidence 46899999999999999999997 89999999985544
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=97.90 E-value=5e-05 Score=63.42 Aligned_cols=104 Identities=16% Similarity=0.250 Sum_probs=73.7
Q ss_pred HHHHHHhhc--CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------------c
Q 026945 9 SLVEKLALN--LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------------------K 60 (230)
Q Consensus 9 eiv~~v~~~--~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------------------~ 60 (230)
++++++++. .++|+.|++=+. +. ..+++.+.++|+|.|++|.-.... .
T Consensus 52 ~~v~~ir~~~~~~~~~dvhLmv~-~p---~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~ 127 (228)
T 3ovp_A 52 PVVESLRKQLGQDPFFDMHMMVS-KP---EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEY 127 (228)
T ss_dssp HHHHHHHHHHCSSSCEEEEEECS-CG---GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGG
T ss_pred HHHHHHHHhhCCCCcEEEEEEeC-CH---HHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHH
Confidence 567788777 478998887652 22 246777888999999999631110 0
Q ss_pred -----------------CCCCC----cccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 61 -----------------DGKKF----RADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 61 -----------------~~~~~----~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|+.| +..++-++++++.. ++|+.+.|||+ ++.+.++.+ .|||.+.+||++...++
T Consensus 128 l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~-aGAd~~VvGsaIf~a~d 205 (228)
T 3ovp_A 128 LAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAE-AGANMIVSGSAIMRSED 205 (228)
T ss_dssp TGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHH-HTCCEEEESHHHHTCSC
T ss_pred HHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 11111 12356678887765 58999999994 889988886 89999999999887664
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00016 Score=60.05 Aligned_cols=103 Identities=18% Similarity=0.250 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-+.++++.++-+ .+|+=+ ..+.++....++...++|+|+|-.+- |+ ++++..+.++.+++.
T Consensus 101 ~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~~e~i~~a~~ia~eaGADfVKTsT-------Gf~~~gat~~dv~~m~~~ 172 (220)
T 1ub3_A 101 DLDYLEAEVRAVREAVPQA-VLKVILETGYFSPEEIARLAEAAIRGGADFLKTST-------GFGPRGASLEDVALLVRV 172 (220)
T ss_dssp CHHHHHHHHHHHHHHSTTS-EEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCC-------SSSSCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCC-CceEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCC-------CCCCCCCCHHHHHHHHHh
Confidence 5667777788888776433 455322 13456777888999999999997432 12 245666777766663
Q ss_pred --CCccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhh
Q 026945 79 --LRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLL 114 (230)
Q Consensus 79 --~~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l 114 (230)
.++||-++|||+|.+++.++++ .|++ |+..|+.++
T Consensus 173 vg~~v~VkaaGGirt~~~al~~i~-aGa~RiG~S~g~~I~ 211 (220)
T 1ub3_A 173 AQGRAQVKAAGGIRDRETALRMLK-AGASRLGTSSGVALV 211 (220)
T ss_dssp HTTSSEEEEESSCCSHHHHHHHHH-TTCSEEEETTHHHHH
T ss_pred hCCCCeEEEECCCCCHHHHHHHHH-CCCcccchhHHHHHH
Confidence 4699999999999999999997 8999 777777654
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=97.89 E-value=6.3e-05 Score=63.80 Aligned_cols=106 Identities=11% Similarity=0.134 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-- 79 (230)
+++.+.++++..++ .++.+.|-+. +.++ ++.+.++ |++.|-++.|.-.. + ..|++...++.+.+
T Consensus 135 ~~~~l~~l~~~a~~-lGl~~lvEv~---~~eE----~~~A~~l~g~~iIGinnr~l~t---~--~~d~~~~~~l~~~ip~ 201 (251)
T 1i4n_A 135 TAEQIKEIYEAAEE-LGMDSLVEVH---SRED----LEKVFSVIRPKIIGINTRDLDT---F--EIKKNVLWELLPLVPD 201 (251)
T ss_dssp CHHHHHHHHHHHHT-TTCEEEEEEC---SHHH----HHHHHTTCCCSEEEEECBCTTT---C--CBCTTHHHHHGGGSCT
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC---CHHH----HHHHHhcCCCCEEEEeCccccc---C--CCCHHHHHHHHHhCCC
Confidence 34567777777765 4777777665 2222 5667788 99999999986432 2 56788888887776
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++++|+-|||+|++|+.++.+ . +|+|.+|.+++..++.-..+
T Consensus 202 ~~~vIaEsGI~t~edv~~~~~-~-a~avLVG~aimr~~d~~~~~ 243 (251)
T 1i4n_A 202 DTVVVAESGIKDPRELKDLRG-K-VNAVLVGTSIMKAENPRRFL 243 (251)
T ss_dssp TSEEEEESCCCCGGGHHHHTT-T-CSEEEECHHHHHCSSHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHH-h-CCEEEEcHHHcCCcCHHHHH
Confidence 579999999999999999886 6 99999999999987765544
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00011 Score=61.49 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=77.0
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCC---C----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVF---P----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKA 74 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g---~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~ 74 (230)
+.+.+.+-+.++++.++ .| +|+=+- . +.++....++...++|+|+|--+.... ..+++..+.++.
T Consensus 110 ~~~~v~~ei~~v~~a~~~~~--lKvIiEt~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~-----~~~gAt~edv~l 182 (231)
T 3ndo_A 110 DLDAVSADITAVRKAVRAAT--LKVIVESAALLEFSGEPLLADVCRVARDAGADFVKTSTGFH-----PSGGASVQAVEI 182 (231)
T ss_dssp CHHHHHHHHHHHHHHTTTSE--EEEECCHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCC-----TTCSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCCc--eEEEEECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCC-----CCCCCCHHHHHH
Confidence 67778888888888874 44 465432 2 456677888889999999997443211 024567777777
Q ss_pred HHhhC--CccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhhh
Q 026945 75 VKNAL--RIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 115 (230)
Q Consensus 75 i~~~~--~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l~ 115 (230)
+++.+ +++|-++|||+|.+++.++++ .||+ |...|+.++.
T Consensus 183 m~~~v~~~v~VKaaGGIrt~~~a~~~i~-aGa~RiGtS~g~~I~~ 226 (231)
T 3ndo_A 183 MARTVGERLGVKASGGIRTAEQAAAMLD-AGATRLGLSGSRAVLD 226 (231)
T ss_dssp HHHHHTTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESSHHHHHH
T ss_pred HHHHhCCCceEEEeCCCCCHHHHHHHHH-hcchhcccchHHHHHh
Confidence 77765 599999999999999999996 8999 6666666553
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.89 E-value=6e-05 Score=61.34 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=56.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..-.+.+.+...|++.+-+ |. -.+.|+++++.+++|||+.|.|++.+|+.++++ .||++|+.+...|+
T Consensus 117 ~~~~~~i~~~~PD~iEiLP----------Gi-~p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~-aGA~aVsTs~~~LW 184 (192)
T 3kts_A 117 NKGVALIQKVQPDCIELLP----------GI-IPEQVQKMTQKLHIPVIAGGLIETSEQVNQVIA-SGAIAVTTSNKHLW 184 (192)
T ss_dssp HHHHHHHHHHCCSEEEEEC----------TT-CHHHHHHHHHHHCCCEEEESSCCSHHHHHHHHT-TTEEEEEECCGGGG
T ss_pred HHHHHHHhhcCCCEEEECC----------ch-hHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHH-cCCeEEEeCCHHHh
Confidence 3455556666777775542 12 237899999999999999999999999999997 89999999988777
Q ss_pred CC
Q 026945 116 NP 117 (230)
Q Consensus 116 nP 117 (230)
+-
T Consensus 185 ~~ 186 (192)
T 3kts_A 185 EG 186 (192)
T ss_dssp TT
T ss_pred Cc
Confidence 64
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=97.88 E-value=9.9e-05 Score=62.47 Aligned_cols=102 Identities=17% Similarity=0.131 Sum_probs=65.4
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC---CCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++++.+++. ++++..-+....+ .+.++.+...+.+++.+-+. |.. +... .+...+.++++++.+++||
T Consensus 132 ~~~~~~~~~~~-g~~~i~~~a~~t~----~e~~~~~~~~~~g~v~~~s~~G~tG~-~~~~-~~~~~~~i~~v~~~~~~pI 204 (262)
T 1rd5_A 132 AHSLWSEAKNN-NLELVLLTTPAIP----EDRMKEITKASEGFVYLVSVNGVTGP-RANV-NPRVESLIQEVKKVTNKPV 204 (262)
T ss_dssp HHHHHHHHHHT-TCEECEEECTTSC----HHHHHHHHHHCCSCEEEECSSCCBCT-TSCB-CTHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHc-CCceEEEECCCCC----HHHHHHHHhcCCCeEEEecCCCCCCC-CcCC-CchHHHHHHHHHhhcCCeE
Confidence 45566665543 4554443432211 23444444555556654332 221 1111 1234578999999899999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++.|||+|++++.++++ .|||+|.+|+++...
T Consensus 205 ~vgGGI~~~e~~~~~~~-~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 205 AVGFGISKPEHVKQIAQ-WGADGVIIGSAMVRQ 236 (262)
T ss_dssp EEESCCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred EEECCcCCHHHHHHHHH-cCCCEEEEChHHHhH
Confidence 99999999999999886 899999999987654
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.4e-05 Score=66.94 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=71.8
Q ss_pred HHHHHHhh-cCCceEEEEECCCC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLAL-NLNVPVSCKIRVFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~-~~~~pvsvKiR~g~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+-|++++. ..+.++.+.-|... ..+++++-++.++++|++.|.+++.+ +++.++++.+.+++|+
T Consensus 138 ~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e~~~-----------~~~~~~~i~~~~~iP~ 206 (295)
T 1xg4_A 138 DRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPI 206 (295)
T ss_dssp HHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCC-----------SHHHHHHHHHHHCSCB
T ss_pred HHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEeCCC-----------CHHHHHHHHHHcCCCE
Confidence 33444443 34677888888743 23678999999999999999998852 5789999999999999
Q ss_pred EEcCCC--CCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 84 LANGNV--RHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 84 i~nGgI--~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
++|... .++..-.+-|.+.|++.|++|.+++.
T Consensus 207 ~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~ 240 (295)
T 1xg4_A 207 LANITEFGATPLFTTDELRSAHVAMALYPLSAFR 240 (295)
T ss_dssp EEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred EEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence 998765 33333345566799999999987663
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.9e-05 Score=63.48 Aligned_cols=105 Identities=14% Similarity=0.279 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC--CCCCc--------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR--TRDEK-------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r--t~~~~-------------------------- 60 (230)
++++++++.++.|+.|-+=+ .+. .++++.+.++|+|.+++|.- .....
T Consensus 52 ~~v~~lr~~~~~~~~vhlmv-~dp---~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~ 127 (230)
T 1tqj_A 52 LIVDAIRPLTKKTLDVHLMI-VEP---EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF 127 (230)
T ss_dssp HHHHHHGGGCCSEEEEEEES-SSG---GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGG
T ss_pred HHHHHHHhhcCCcEEEEEEc-cCH---HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHH
Confidence 67888888777788766544 232 24667778888888888865 21100
Q ss_pred -----------------CCCC----CcccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 61 -----------------DGKK----FRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 61 -----------------~~~~----~~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.++. .+...+.++++++.. ++||.+-|||+. +.+.++.+ +|||++.+|++++
T Consensus 128 ~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~-aGad~vvvGSai~ 205 (230)
T 1tqj_A 128 LEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLE-AGANAIVAGSAVF 205 (230)
T ss_dssp GTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHH-HTCCEEEESHHHH
T ss_pred HHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHH-cCCCEEEECHHHH
Confidence 0000 122467788888776 899999999986 88888875 8999999999999
Q ss_pred hCCcc
Q 026945 115 ENPAL 119 (230)
Q Consensus 115 ~nP~l 119 (230)
..|+.
T Consensus 206 ~a~d~ 210 (230)
T 1tqj_A 206 NAPNY 210 (230)
T ss_dssp TSSCH
T ss_pred CCCCH
Confidence 87763
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=97.88 E-value=5.6e-05 Score=68.10 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=82.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...+.++++++++ ++++.+...-+|+.+++.++++.|++.|+.+|. | .. ++.+++..+++++.+++
T Consensus 193 ~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~iE-------e--P~-~~~~~~~~~~l~~~~~i 262 (400)
T 4dxk_A 193 LKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKALTPYQTFWHE-------D--PI-KMDSLSSLTRYAAVSPA 262 (400)
T ss_dssp HHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHTGGGCCSEEE-------C--CB-CTTSGGGHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCEEE-------c--CC-CcccHHHHHHHHHhCCC
Confidence 455678899999887 588999988899999999999999999999997 2 11 23477888999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.+.+.++.++.++++...+|.|.+
T Consensus 263 PIa~dE~~~~~~~~~~~l~~~a~d~v~~ 290 (400)
T 4dxk_A 263 PISASETLGSRWAFRDLLETGAAGVVML 290 (400)
T ss_dssp CEEECTTCCHHHHHHHHHHTTCCCEEEE
T ss_pred CEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 9999999999999999998777898877
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=97.87 E-value=4.7e-05 Score=67.78 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=79.0
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
..++++++++++ ++++.+..+-+|+.++ +++++.+++.|+.+|. | .. ++.+|+..+++++.+++||++
T Consensus 176 d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ipIa~ 244 (375)
T 1r0m_A 176 DVQPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDLTYIE-------Q--PL-AWDDLVDHAELARRIRTPLCL 244 (375)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCCSCEE-------C--CS-CTTCSHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCCcEEE-------C--CC-CcccHHHHHHHHHhCCCCEEe
Confidence 346677777765 6889999888899888 9999999999999996 2 12 245899999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.+.+++++.++++...+|.|++
T Consensus 245 dE~~~~~~~~~~~i~~~~~d~v~i 268 (375)
T 1r0m_A 245 DESVASASDARKALALGAGGVINL 268 (375)
T ss_dssp STTCCSHHHHHHHHHHTSCSEEEE
T ss_pred cCccCCHHHHHHHHHhCCCCEEEE
Confidence 999999999999998878999988
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.6e-05 Score=70.30 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc------CCCCCccc---HHHHHHHHh
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK------DGKKFRAD---WNAIKAVKN 77 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~------~~~~~~~~---~~~i~~i~~ 77 (230)
+.+.++.+++.+++||.+|-=. + .+-++.+. |++.|.+ |...... .+. |... ...+.++.+
T Consensus 256 ~L~~I~~l~~~~~vpvi~k~v~--~----~~~a~~l~--G~d~v~v-g~g~g~~~~~r~~~~~-g~~~~~~l~~~~~~~~ 325 (486)
T 2cu0_A 256 AIKSMKEMRQKVDADFIVGNIA--N----PKAVDDLT--FADAVKV-GIGPGSICTTRIVAGV-GVPQITAVAMVADRAQ 325 (486)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEC--C----HHHHTTCT--TSSEEEE-CSSCSTTBCHHHHTCC-CCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhCCccccCCcC--C----HHHHHHhh--CCCeEEE-eeeeccceeeeEEeec-CcchHHHHHHHHHHHH
Confidence 3345566666667888766322 1 12344444 9999999 3211100 011 1122 333455555
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..++|||+.|||.+..|+.++|. .|||+||+|+.++.-
T Consensus 326 ~~~vpVia~GGi~~~~di~kala-lGA~~v~~g~~~~~~ 363 (486)
T 2cu0_A 326 EYGLYVIADGGIRYSGDIVKAIA-AGADAVMLGNLLAGT 363 (486)
T ss_dssp HHTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTB
T ss_pred HcCCcEEecCCCCCHHHHHHHHH-cCCCceeeChhhhcC
Confidence 66899999999999999999997 899999999998864
|
| >3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00011 Score=66.07 Aligned_cols=109 Identities=11% Similarity=0.163 Sum_probs=91.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEE-EEECCCCChHHHHHHHHHHHHcCC--CEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNL--NVPVS-CKIRVFPNLQDTIKYAKMLEDAGC--SLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvs-vKiR~g~~~~~~~~~a~~l~~~G~--~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+|+.-.+.++++++++ ++++. +..+-+|+.+++.++++.+++.|+ .+|. | .. .+.+++..+++++
T Consensus 168 ~~~~d~~~v~avR~a~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i~~~~iE-------q--P~-~~~d~~~~~~l~~ 237 (391)
T 3gd6_A 168 NLDADEEFLSRVKEEFGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDLGLEMIE-------S--PA-PRNDFDGLYQLRL 237 (391)
T ss_dssp CHHHHHHHHHHHHHHHGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCSSCCEEE-------C--CS-CTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCCCcceec-------C--CC-ChhhHHHHHHHHH
Confidence 5677788999999886 68899 999989999999999999999999 8886 2 11 2448999999999
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+++|| .+.+.+++++.++++...+|.|++--+-.+...-+.++
T Consensus 238 ~~~iPI--dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i 281 (391)
T 3gd6_A 238 KTDYPI--SEHVWSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKA 281 (391)
T ss_dssp HCSSCE--EEECCCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred HcCCCc--CCCCCCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHH
Confidence 999999 78899999999999988899999987777766544433
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=64.43 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=74.0
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--------------------------Cc-
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------------------EK- 60 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--------------------------~~- 60 (230)
.+++++++.+ ++|+.|.+-+.. ...+++.+.++|+++|++|.-... ..
T Consensus 75 ~~v~~lr~~~p~~~ldvHLmv~~----p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l 150 (246)
T 3inp_A 75 MVLKALRDYGITAGMDVHLMVKP----VDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCL 150 (246)
T ss_dssp HHHHHHHHHTCCSCEEEEEECSS----CHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGG
T ss_pred HHHHHHHHhCCCCeEEEEEeeCC----HHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHH
Confidence 5788888887 899999887532 235778888999999999953110 00
Q ss_pred ----------------CCCCC----cccHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 61 ----------------DGKKF----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 61 ----------------~~~~~----~~~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+++.| +..++-|+++++. .+++|.+-|||+ ++.+.++.+ .|||.+.+|+++..
T Consensus 151 ~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~-aGAD~~V~GSaIf~ 228 (246)
T 3inp_A 151 KYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAV-CGVNAFVAGSAIFN 228 (246)
T ss_dssp TTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHT-TTCCEEEESHHHHT
T ss_pred HHHHhcCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHH-cCCCEEEEehHHhC
Confidence 12212 2335667777664 358999999997 788888875 89999999999887
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
.++
T Consensus 229 a~d 231 (246)
T 3inp_A 229 SDS 231 (246)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
|
| >3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00016 Score=65.09 Aligned_cols=99 Identities=7% Similarity=-0.006 Sum_probs=82.7
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
-.+.++++++++ ++++.+..+-+|+.++ .++++.+++.|+.+|. | .. .+.+++..+++++.+++||.
T Consensus 191 d~~~v~avR~a~G~~~~L~vDaN~~w~~~~-~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~iPIa 259 (400)
T 3mwc_A 191 DVEPLQETRRAVGDHFPLWTDANSSFELDQ-WETFKAMDAAKCLFHE-------Q--PL-HYEALLDLKELGERIETPIC 259 (400)
T ss_dssp SHHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHHHGGGCCSCEE-------S--CS-CTTCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCCCHHH-HHHHHHHHhcCCCEEe-------C--CC-ChhhHHHHHHHHhhCCCCEE
Confidence 356778888776 6899999999999888 9999999999999986 2 11 24479999999999999999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+...+.++.++.++++...+|.|++--+-.+.
T Consensus 260 ~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GG 291 (400)
T 3mwc_A 260 LDESLISSRVAEFVAKLGISNIWNIKIQRVGG 291 (400)
T ss_dssp ESTTCCSHHHHHHHHHTTCCSEEEECHHHHTS
T ss_pred EeCCcCCHHHHHHHHhcCCCCEEEEcchhhCC
Confidence 99999999999999998889999885544444
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.5e-05 Score=65.93 Aligned_cols=92 Identities=10% Similarity=0.099 Sum_probs=78.6
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
..+.++++++++ ++++.+..+-+|+.++ +++++.+++.|+.+|. | .. ++.+|+..+++++.+++||++
T Consensus 169 d~~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ipIa~ 237 (369)
T 2zc8_A 169 DYEVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRLDYIE-------Q--PL-AYDDLLDHAKLQRELSTPICL 237 (369)
T ss_dssp SHHHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCCSCEE-------C--CS-CTTCSHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCCcEEE-------C--CC-CcccHHHHHHHHhhCCCCEEE
Confidence 346677777766 6889998888899888 9999999999999998 2 12 245889999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.+.++.++.++++...+|.|++
T Consensus 238 dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 238 DESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp STTCCSHHHHHHHHHHTCCSEEEE
T ss_pred cCccCCHHHHHHHHHhCCCCEEEE
Confidence 999999999999998777999988
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00035 Score=59.13 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++...+ .++.+-|-+. +.++ ++...+.|++.|-|..|.-.. -..|.+...++...+ +
T Consensus 138 ~~~~l~~l~~~A~~-lGl~~LvEVh---~~~E----l~rAl~~~a~iIGINNRnL~t-----f~vdl~~t~~L~~~ip~~ 204 (258)
T 4a29_A 138 TERELESLLEYARS-YGMEPLILIN---DEND----LDIALRIGARFIGIMSRDFET-----GEINKENQRKLISMIPSN 204 (258)
T ss_dssp CHHHHHHHHHHHHH-TTCCCEEEES---SHHH----HHHHHHTTCSEEEECSBCTTT-----CCBCHHHHHHHHTTSCTT
T ss_pred CHHHHHHHHHHHHH-HhHHHHHhcc---hHHH----HHHHhcCCCcEEEEeCCCccc-----cccCHHHHHHHHhhCCCC
Confidence 34445555555433 4555555554 2222 345556899999998886542 257888888888876 4
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+.+|+-+||.|++|+..+.+ .|+|+|.||.++|.+|+-.+
T Consensus 205 ~~~VsESGI~t~~dv~~l~~-~G~~a~LVGealmr~~d~~~ 244 (258)
T 4a29_A 205 VVKVAKLGISERNEIEELRK-LGVNAFLISSSLMRNPEKIK 244 (258)
T ss_dssp SEEEEEESSCCHHHHHHHHH-TTCCEEEECHHHHHCTTHHH
T ss_pred CEEEEcCCCCCHHHHHHHHH-CCCCEEEECHHHhCCCcHHH
Confidence 78899999999999998775 89999999999999987433
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=97.79 E-value=7.1e-05 Score=79.42 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCEEE---EecCCCCCcCCCC--CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH--------
Q 026945 33 QDTIKYAKMLEDAGCSLLA---VHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL-------- 99 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~---vh~rt~~~~~~~~--~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l-------- 99 (230)
.++.+.+..+.++|+|.|. +-|.......+.. ...-...+.+|++.+++|||+.|||.+.+++.++|
T Consensus 703 ~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~aaltg~ws~~~ 782 (2060)
T 2uva_G 703 VDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYPYLTGSWSTKF 782 (2060)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHhcCcchhhc
Confidence 4556666677899999999 6664433221110 02235788899999999999999999999999999
Q ss_pred ---HhhCCcEEEEehhhhhCCcc
Q 026945 100 ---EETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 100 ---~~~gadgVmigR~~l~nP~l 119 (230)
. .|||||++|+.++.-+.-
T Consensus 783 g~pa-lGAdgV~~GT~f~~t~Ea 804 (2060)
T 2uva_G 783 GYPP-MPFDGCMFGSRMMTAKEA 804 (2060)
T ss_dssp TSCC-CCCSCEEESGGGGGBTTS
T ss_pred CCCC-CCCCEEEEchhhhcCcCC
Confidence 6 799999999999987663
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.9e-05 Score=63.52 Aligned_cols=66 Identities=27% Similarity=0.349 Sum_probs=53.7
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR--IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
....+.|+|+|.+++. .+..++.++++++.++ +||++.|||+ ++++.++++ .|+++|.+|++++..
T Consensus 115 ~~a~~~G~d~v~v~~t---------~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~-~Ga~gv~vGsai~~~ 182 (212)
T 2v82_A 115 FTALEAGAQALKIFPS---------SAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID-AGCAGAGLGSDLYRA 182 (212)
T ss_dssp HHHHHTTCSEEEETTH---------HHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH-HTCSEEEECTTTCCT
T ss_pred HHHHHCCCCEEEEecC---------CCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH-cCCCEEEEChHHhCC
Confidence 4456789999987431 1235788999998886 9999999997 899999887 899999999998765
|
| >3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00024 Score=63.70 Aligned_cols=100 Identities=13% Similarity=0.166 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHH-HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKML-EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l-~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.-.+.++++++++ ++++.+..+-+|+.+++.++++.+ ++.++ +|. | . -.+++..+++++.+
T Consensus 176 ~~~~d~~~v~avR~a~G~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~i-~iE-------e--P---~~~~~~~~~l~~~~ 242 (386)
T 3fv9_G 176 GPALDAERITACLADRQPGEWYLADANNGLTVEHALRMLSLLPPGLDI-VLE-------A--P---CASWAETKSLRARC 242 (386)
T ss_dssp HHHHHHHHHHHHTTTCCTTCEEEEECTTCCCHHHHHHHHHHSCSSCCC-EEE-------C--C---CSSHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHhhccCCc-EEe-------c--C---CCCHHHHHHHHhhC
Confidence 4667778899999987 689999999999999999999999 77777 764 2 1 12899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
++||.+...+.+..++.++++...+|.|++--+-.+
T Consensus 243 ~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~G 278 (386)
T 3fv9_G 243 ALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQG 278 (386)
T ss_dssp CSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHT
T ss_pred CCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccC
Confidence 999999999999999999998778999988544333
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00027 Score=62.91 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=74.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+++...+.++.+++..+.||.+-+-+.. .+.++.+.++|++.|+++.-. +. .....+.++++++.+++|
T Consensus 79 s~e~~~~~I~~vk~~~~~pvga~ig~~~-----~e~a~~l~eaGad~I~ld~a~-----G~-~~~~~~~i~~i~~~~~~~ 147 (361)
T 3khj_A 79 DMESQVNEVLKVKNSGGLRVGAAIGVNE-----IERAKLLVEAGVDVIVLDSAH-----GH-SLNIIRTLKEIKSKMNID 147 (361)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECTTC-----HHHHHHHHHTTCSEEEECCSC-----CS-BHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHhccCceEEEEeCCCH-----HHHHHHHHHcCcCeEEEeCCC-----CC-cHHHHHHHHHHHHhcCCc
Confidence 5777788899998877889888885532 678899999999999986421 11 122357788898888999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|++ |++.|++++..+.+ .|+|+|.+|
T Consensus 148 Viv-g~v~t~e~A~~l~~-aGaD~I~VG 173 (361)
T 3khj_A 148 VIV-GNVVTEEATKELIE-NGADGIKVG 173 (361)
T ss_dssp EEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred EEE-ccCCCHHHHHHHHH-cCcCEEEEe
Confidence 987 67899999998776 899999986
|
| >4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0003 Score=63.30 Aligned_cols=104 Identities=15% Similarity=0.147 Sum_probs=87.9
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+|+.-.+.++++++++ ++++.+...-+|+..++.++++.+++.|+.+|. | .. + |++..+++++.+++
T Consensus 195 ~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~~~A~~~~~~l~~~~i~~iE-------q--P~--~-d~~~~~~l~~~~~i 262 (398)
T 4dye_A 195 DCAGDVAILRAVREALPGVNLRVDPNAAWSVPDSVRAGIALEELDLEYLE-------D--PC--V-GIEGMAQVKAKVRI 262 (398)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C--CS--S-HHHHHHHHHHHCCS
T ss_pred CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCHHHHHHHHHHHhhcCCCEEc-------C--CC--C-CHHHHHHHHhhCCC
Confidence 5666778888888876 678889888899999999999999999999996 2 12 3 89999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
||.+...+.++.++.++++...+|.|++--+-.+...
T Consensus 263 PIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit 299 (398)
T 4dye_A 263 PLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIA 299 (398)
T ss_dssp CEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHH
T ss_pred CEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence 9999999999999999998778999998655555433
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0004 Score=60.40 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCceEEEEEC-----CCC--Ch-HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 6 LVKSLVEKLALNLNVPVSCKIR-----VFP--NL-QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR-----~g~--~~-~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
.+.+++++.+ ..++|+.+=+- ++. +. +...+.++.+.+.|+|++-+|.-.. ++ .+|+.+.++.+
T Consensus 143 ~i~~v~~~~~-~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~----~~---g~~~~~~~vv~ 214 (304)
T 1to3_A 143 MVKEFNELCH-SNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLY----GK---GARSDLLTASQ 214 (304)
T ss_dssp HHHHHHHHHH-TTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGG----GC---SCHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcC----CC---CCHHHHHHHHH
Confidence 3344444443 35889877652 221 22 3345568889999999999987321 11 16777777766
Q ss_pred h----CCcc-EEEcCCCCCHH----HHHHHHHhhCCcEEEEehhhhhC
Q 026945 78 A----LRIP-VLANGNVRHME----DVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 ~----~~ip-vi~nGgI~s~~----da~~~l~~~gadgVmigR~~l~n 116 (230)
. +++| |++.||+ +.+ .+..+++ .|++||.+||.+...
T Consensus 215 ~~~~~~~~P~Vv~aGG~-~~~~~~~~~~~a~~-aGa~Gv~vGRaI~q~ 260 (304)
T 1to3_A 215 RLNGHINMPWVILSSGV-DEKLFPRAVRVAME-AGASGFLAGRAVWSS 260 (304)
T ss_dssp HHHHTCCSCEEECCTTS-CTTTHHHHHHHHHH-TTCCEEEESHHHHGG
T ss_pred hccccCCCCeEEEecCC-CHHHHHHHHHHHHH-cCCeEEEEehHHhCc
Confidence 6 8999 9999999 553 3666665 799999999999876
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=9.5e-05 Score=66.35 Aligned_cols=95 Identities=11% Similarity=-0.043 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-- 78 (230)
+++...++++++++.+ ++++.+...-+|+.++++++++.+++.|+++|. + ... .+++..+++++.
T Consensus 183 ~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~iE-------~--P~~--~d~~~~~~l~~~l~ 251 (392)
T 3p3b_A 183 GTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLE-------E--AFH--EDEALYEDLKEWLG 251 (392)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCEEEEE-------C--SSS--CCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEe-------c--CCc--ccHHHHHHHHHhhc
Confidence 3466778899998876 688888888889999999999999999998876 2 122 578999999998
Q ss_pred ---CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 ---LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ---~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||++.+ +.+++++.++++...+|.|.+
T Consensus 252 ~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~i 284 (392)
T 3p3b_A 252 QRGQNVLIADGE-GLASPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECC
T ss_pred cCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEe
Confidence 899999999 999999999998777998876
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00069 Score=58.68 Aligned_cols=95 Identities=11% Similarity=0.193 Sum_probs=63.7
Q ss_pred HHHHHHhhcCCceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 9 SLVEKLALNLNVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
+++++..+ .++|+.+=.-.| .+.+.....++...++|+|+|-..- ++ +.++++.+.+++||+
T Consensus 162 ~v~~~a~~-~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~~---------t~----e~~~~vv~~~~vPVv 227 (295)
T 3glc_A 162 QLVDAGMK-VGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYY---------VE----KGFERIVAGCPVPIV 227 (295)
T ss_dssp HHHHHHHT-TTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEEC---------CT----TTHHHHHHTCSSCEE
T ss_pred HHHHHHHH-cCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeCC---------CH----HHHHHHHHhCCCcEE
Confidence 34444433 368887633222 2323344578889999999998751 11 235778878899999
Q ss_pred EcCCCC-CHHHH----HHHHHhhCCcEEEEehhhhhCCc
Q 026945 85 ANGNVR-HMEDV----QKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 85 ~nGgI~-s~~da----~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.||+. +.+++ .++++ .|++|+.+||.++..|.
T Consensus 228 ~~GG~~~~~~~~l~~v~~ai~-aGA~Gv~vGRnI~q~~d 265 (295)
T 3glc_A 228 IAGGKKLPEREALEMCWQAID-QGASGVDMGRNIFQSDH 265 (295)
T ss_dssp EECCSCCCHHHHHHHHHHHHH-TTCSEEEESHHHHTSSS
T ss_pred EEECCCCCHHHHHHHHHHHHH-hCCeEEEeHHHHhcCcC
Confidence 999998 44444 44455 79999999999987654
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00044 Score=57.69 Aligned_cols=102 Identities=9% Similarity=0.171 Sum_probs=73.4
Q ss_pred HHHHHH---HHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEE---EEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 7 VKSLVE---KLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLL---AVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 7 ~~eiv~---~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i---~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+.+.++ .+++. ++-+.+-+..... .+.++.+.+.| +|+| +||+....|. + .+..++-++++++..
T Consensus 100 ~~~~i~~~~~i~~~-G~k~gvalnp~tp----~~~~~~~l~~g~~D~VlvmsV~pGf~gq~--f-~~~~l~ki~~lr~~~ 171 (227)
T 1tqx_A 100 TERCIQLAKEIRDN-NLWCGISIKPKTD----VQKLVPILDTNLINTVLVMTVEPGFGGQS--F-MHDMMGKVSFLRKKY 171 (227)
T ss_dssp HHHHHHHHHHHHTT-TCEEEEEECTTSC----GGGGHHHHTTTCCSEEEEESSCTTCSSCC--C-CGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc-CCeEEEEeCCCCc----HHHHHHHhhcCCcCEEEEeeeccCCCCcc--c-chHHHHHHHHHHHhc
Confidence 456666 77653 5556665654332 34556666776 9999 5555555443 2 355678888888877
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++|.+-|||+ .+.+..+.+ .|||.+.+|+++...++
T Consensus 172 ~~~~I~VdGGI~-~~ti~~~~~-aGAd~~V~GsaIf~~~d 209 (227)
T 1tqx_A 172 KNLNIQVDGGLN-IETTEISAS-HGANIIVAGTSIFNAED 209 (227)
T ss_dssp TTCEEEEESSCC-HHHHHHHHH-HTCCEEEESHHHHTCSS
T ss_pred cCCeEEEECCCC-HHHHHHHHH-cCCCEEEEeHHHhCCCC
Confidence 78999999995 889998886 89999999999988665
|
| >4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00035 Score=62.77 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=83.4
Q ss_pred ChHHHHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+|+.-.+.++++++++ ++++.+..+-+|+..++.++++.+++.++ +|. | +..+++..+++++.+
T Consensus 191 ~~~~d~~~v~avR~a~gg~~~~L~vDaN~~w~~~~A~~~~~~L~~~~i-~iE-------e-----P~~~~~~~~~l~~~~ 257 (391)
T 4e8g_A 191 PVEIDIETVRKVWERIRGTGTRLAVDGNRSLPSRDALRLSRECPEIPF-VLE-------Q-----PCNTLEEIAAIRGRV 257 (391)
T ss_dssp CHHHHHHHHHHHHHHHTTTTCEEEEECTTCCCHHHHHHHHHHCTTSCE-EEE-------S-----CSSSHHHHHHHGGGC
T ss_pred CHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCCHHHHHHHHHHHhhcCe-EEe-------c-----CCccHHHHHHHHhhC
Confidence 5667778888887764 57899999999999999999999999988 774 3 134899999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++||.+...+.+..++.++++...+|.|++--+-.
T Consensus 258 ~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~ 292 (391)
T 4e8g_A 258 QHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRI 292 (391)
T ss_dssp CSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred CCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 99999999999999999999877899998854333
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0003 Score=57.03 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEe-cCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.+.++++.+++. +.++.+-+- .++ +..+-++.+.+.|++++.++ +.+.. ..+. .+.. +.+++++.. ++|+
T Consensus 90 ~~~~~~~~~~~~~-g~~~gv~~~-s~~--~p~~~~~~~~~~g~d~v~~~~~~~~~-~~g~-~~~~-~~i~~~~~~-~~pi 161 (207)
T 3ajx_A 90 STIAGAVKAAQAH-NKGVVVDLI-GIE--DKATRAQEVRALGAKFVEMHAGLDEQ-AKPG-FDLN-GLLAAGEKA-RVPF 161 (207)
T ss_dssp HHHHHHHHHHHHH-TCEEEEECT-TCS--SHHHHHHHHHHTTCSEEEEECCHHHH-TSTT-CCTH-HHHHHHHHH-TSCE
T ss_pred HHHHHHHHHHHHc-CCceEEEEe-cCC--ChHHHHHHHHHhCCCEEEEEeccccc-ccCC-CchH-HHHHHhhCC-CCCE
Confidence 4455555555542 555544332 221 12233455667799999555 43321 1111 1222 555555543 7999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++.|||+ ++++.++++ .|||+|.+||+++..++
T Consensus 162 ~v~GGI~-~~~~~~~~~-aGad~vvvGsaI~~~~d 194 (207)
T 3ajx_A 162 SVAGGVK-VATIPAVQK-AGAEVAVAGGAIYGAAD 194 (207)
T ss_dssp EEESSCC-GGGHHHHHH-TTCSEEEESHHHHTSSS
T ss_pred EEECCcC-HHHHHHHHH-cCCCEEEEeeeccCCCC
Confidence 9999997 788888886 89999999999987655
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00038 Score=63.72 Aligned_cols=107 Identities=16% Similarity=0.258 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++..++ .++.+.|-+. + .+-++...++|++.|-+..|.-.. -..|++...++.+.+ +
T Consensus 142 ~~~~l~~l~~~a~~-lgm~~LvEvh---~----~eE~~~A~~lga~iIGinnr~L~t-----~~~dl~~~~~L~~~ip~~ 208 (452)
T 1pii_A 142 DDDQYRQLAAVAHS-LEMGVLTEVS---N----EEEQERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHN 208 (452)
T ss_dssp CHHHHHHHHHHHHH-TTCEEEEEEC---S----HHHHHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHH-cCCeEEEEeC---C----HHHHHHHHHCCCCEEEEeCCCCCC-----CCCCHHHHHHHHHhCCCC
Confidence 44567777777765 4777777665 2 233556677899999999886532 257888888888776 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+++|+-|||+|++|+.++.+ . +|+|.||.+++..++.-..++
T Consensus 209 ~~vIaEsGI~t~edv~~~~~-~-a~avLVGealmr~~d~~~~~~ 250 (452)
T 1pii_A 209 VTVISESGINTYAQVRELSH-F-ANGFLIGSALMAHDDLHAAVR 250 (452)
T ss_dssp SEEEEESCCCCHHHHHHHTT-T-CSEEEECHHHHTCSCHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHH-h-CCEEEEcHHHcCCcCHHHHHH
Confidence 89999999999999999886 6 999999999999888766554
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=58.25 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=63.0
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nG 87 (230)
++++..+. .++|+...+. +.. + +....+.|+|+|.+++ .. ..+ -.+.++.++..+ ++|+++.|
T Consensus 95 ~v~~~~~~-~g~~~i~G~~---t~~---e-~~~A~~~Gad~v~~fp---a~---~~g--G~~~lk~l~~~~~~ipvvaiG 158 (207)
T 2yw3_A 95 EVAALAQA-RGVPYLPGVL---TPT---E-VERALALGLSALKFFP---AE---PFQ--GVRVLRAYAEVFPEVRFLPTG 158 (207)
T ss_dssp HHHHHHHH-HTCCEEEEEC---SHH---H-HHHHHHTTCCEEEETT---TT---TTT--HHHHHHHHHHHCTTCEEEEBS
T ss_pred HHHHHHHH-hCCCEEecCC---CHH---H-HHHHHHCCCCEEEEec---Cc---ccc--CHHHHHHHHhhCCCCcEEEeC
Confidence 34444443 4566655432 222 2 4556678999999965 11 111 247789998888 79999999
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
||+ .+++.++++ +|+++|.+|++++.
T Consensus 159 GI~-~~n~~~~l~-aGa~~vavgSai~~ 184 (207)
T 2yw3_A 159 GIK-EEHLPHYAA-LPNLLAVGGSWLLQ 184 (207)
T ss_dssp SCC-GGGHHHHHT-CSSBSCEEESGGGS
T ss_pred CCC-HHHHHHHHh-CCCcEEEEehhhhC
Confidence 996 799999996 89999999998776
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00055 Score=56.51 Aligned_cols=102 Identities=9% Similarity=0.166 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC---CCCcCCCCCcccHHHHHHHHhhC----
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT---RDEKDGKKFRADWNAIKAVKNAL---- 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt---~~~~~~~~~~~~~~~i~~i~~~~---- 79 (230)
..+.++.+++. ++.+.+=+..+.+.+. ++.+ ..++++|.+-+.. ..+. + .+..++.++++++.+
T Consensus 107 ~~~~~~~~~~~-g~~ig~~~~p~t~~e~----~~~~-~~~~d~vl~~~~~pg~~g~~--~-~~~~~~~i~~l~~~~~~~~ 177 (230)
T 1rpx_A 107 LHRTINQIKSL-GAKAGVVLNPGTPLTA----IEYV-LDAVDLVLIMSVNPGFGGQS--F-IESQVKKISDLRKICAERG 177 (230)
T ss_dssp HHHHHHHHHHT-TSEEEEEECTTCCGGG----GTTT-TTTCSEEEEESSCTTCSSCC--C-CTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCcEEEEeCCCCCHHH----HHHH-HhhCCEEEEEEEcCCCCCcc--c-cHHHHHHHHHHHHHHHhcC
Confidence 34566666553 5555555554332222 1111 2578888444332 1111 1 122245566777665
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++|+++.|||+ ++++.++++ .|+|+|.+|+++...++.
T Consensus 178 ~~~pi~v~GGI~-~~n~~~~~~-aGad~vvvgSaI~~a~dp 216 (230)
T 1rpx_A 178 LNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAVFGAPDY 216 (230)
T ss_dssp CCCEEEEESSCC-TTTHHHHHH-HTCCEEEESHHHHTSSCH
T ss_pred CCceEEEECCCC-HHHHHHHHH-cCCCEEEEChhhhCCCCH
Confidence 79999999997 788888775 799999999999887663
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00076 Score=59.26 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG--CSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G--~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++...++++.+++. +.|+++.+ +.+ .+..+.++.+.++| +++|.++.. + + .+...|+.++++++.++
T Consensus 79 ~~~~~~~~i~~~~~~-g~~v~v~~--g~~-~~~~~~a~~~~~~g~~~~~i~i~~~---~--G-~~~~~~~~i~~lr~~~~ 148 (336)
T 1ypf_A 79 QPEKRISFIRDMQSR-GLIASISV--GVK-EDEYEFVQQLAAEHLTPEYITIDIA---H--G-HSNAVINMIQHIKKHLP 148 (336)
T ss_dssp SGGGHHHHHHHHHHT-TCCCEEEE--CCS-HHHHHHHHHHHHTTCCCSEEEEECS---S--C-CSHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHhc-CCeEEEeC--CCC-HHHHHHHHHHHhcCCCCCEEEEECC---C--C-CcHHHHHHHHHHHHhCC
Confidence 455566777777643 66888774 444 44567788899999 999988652 1 2 12457899999999987
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.|++..|.|.++++++.+.+ .|||+|.++
T Consensus 149 ~~~vi~G~v~s~e~A~~a~~-aGad~Ivvs 177 (336)
T 1ypf_A 149 ESFVIAGNVGTPEAVRELEN-AGADATKVG 177 (336)
T ss_dssp TSEEEEEEECSHHHHHHHHH-HTCSEEEEC
T ss_pred CCEEEECCcCCHHHHHHHHH-cCCCEEEEe
Confidence 56555677999999998886 899999993
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00083 Score=54.84 Aligned_cols=101 Identities=10% Similarity=0.111 Sum_probs=60.4
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC---CCCCcCCCCCcccHHHHHHHHhhC----
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR---TRDEKDGKKFRADWNAIKAVKNAL---- 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r---t~~~~~~~~~~~~~~~i~~i~~~~---- 79 (230)
..+.++.+++. +.++.+-+....+.+ .++.+ ..++++|.+-+. ...+. + ++..++.++++++..
T Consensus 98 ~~~~~~~~~~~-g~~i~~~~~~~t~~e----~~~~~-~~~~d~vl~~~~~~g~~g~~--~-~~~~~~~i~~~~~~~~~~~ 168 (220)
T 2fli_A 98 IHGALQKIKAA-GMKAGVVINPGTPAT----ALEPL-LDLVDQVLIMTVNPGFGGQA--F-IPECLEKVATVAKWRDEKG 168 (220)
T ss_dssp HHHHHHHHHHT-TSEEEEEECTTSCGG----GGGGG-TTTCSEEEEESSCTTCSSCC--C-CGGGHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCcEEEEEcCCCCHH----HHHHH-HhhCCEEEEEEECCCCcccc--c-CHHHHHHHHHHHHHHHhcC
Confidence 34455566543 455555453322212 12222 245888854222 22111 1 122345566666554
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++|+++.|||+ ++++.++++ .|+|+|.+||+++..++
T Consensus 169 ~~~~i~v~GGI~-~~~~~~~~~-~Gad~vvvGsai~~~~d 206 (220)
T 2fli_A 169 LSFDIEVDGGVD-NKTIRACYE-AGANVFVAGSYLFKASD 206 (220)
T ss_dssp CCCEEEEESSCC-TTTHHHHHH-HTCCEEEESHHHHTSSC
T ss_pred CCceEEEECcCC-HHHHHHHHH-cCCCEEEEChHHhCCCC
Confidence 79999999998 788888765 79999999999988765
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00095 Score=55.90 Aligned_cols=98 Identities=18% Similarity=0.148 Sum_probs=69.5
Q ss_pred HHHHHHHhhcC---CceEEEEECCC---CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC--CcccHHHHHH--HHh
Q 026945 8 KSLVEKLALNL---NVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--FRADWNAIKA--VKN 77 (230)
Q Consensus 8 ~eiv~~v~~~~---~~pvsvKiR~g---~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~--~~~~~~~i~~--i~~ 77 (230)
.+-+.++++.+ +.|+ |+=+. .+.++....++...++|+|+|-.+- ++. +++..+.++. +++
T Consensus 119 ~~ei~~v~~a~~~~g~~l--KvIlEt~~L~~e~i~~a~ria~eaGADfVKTsT-------G~~~~~gAt~~dv~l~~m~~ 189 (234)
T 1n7k_A 119 YREVSGIVKLAKSYGAVV--KVILEAPLWDDKTLSLLVDSSRRAGADIVKTST-------GVYTKGGDPVTVFRLASLAK 189 (234)
T ss_dssp HHHHHHHHHHHHHTTCEE--EEECCGGGSCHHHHHHHHHHHHHTTCSEEESCC-------SSSCCCCSHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhhcCCeE--EEEEeccCCCHHHHHHHHHHHHHhCCCEEEeCC-------CCCCCCCCCHHHHHHHHHHH
Confidence 33444444433 4666 43221 2456777888899999999998432 222 4566677777 777
Q ss_pred hCCccEEEcCCCCCHHHHHHHHHhhCCc--EEEEehhhhh
Q 026945 78 ALRIPVLANGNVRHMEDVQKCLEETGCE--GVLSAESLLE 115 (230)
Q Consensus 78 ~~~ipvi~nGgI~s~~da~~~l~~~gad--gVmigR~~l~ 115 (230)
.+++||-+.|||++.+++.++++ .|++ |+..|+.++.
T Consensus 190 ~v~v~VKaaGGirt~~~al~~i~-aGa~RiG~S~g~~I~~ 228 (234)
T 1n7k_A 190 PLGMGVKASGGIRSGIDAVLAVG-AGADIIGTSSAVKVLE 228 (234)
T ss_dssp GGTCEEEEESSCCSHHHHHHHHH-TTCSEEEETTHHHHHH
T ss_pred HHCCCEEEecCCCCHHHHHHHHH-cCccccchHHHHHHHH
Confidence 77799999999999999999996 8999 7777776654
|
| >3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0022 Score=56.86 Aligned_cols=96 Identities=14% Similarity=0.164 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHH--HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l--~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
++.-.+.++++++.+ ++++.+-..-+|+..++.++++.+ ++.++.+|. | .. ++.|++..+++++.++
T Consensus 171 ~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 240 (365)
T 3ik4_A 171 VAYDLARLRAIHQAAPTAPLIVDGNCGYDVERALAFCAACKAESIPMVLFE-------Q--PL-PREDWAGMAQVTAQSG 240 (365)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEECTTCCCHHHHHHHHHHHHHTTCCEEEEE-------C--CS-CTTCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCceEEE-------C--CC-CcccHHHHHHHHhhCC
Confidence 566677888888876 466777777789989999999999 777777776 2 11 2348999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+...+.+..++.++++...+|.|.+
T Consensus 241 ipIa~dE~~~~~~~~~~~i~~~a~d~v~i 269 (365)
T 3ik4_A 241 FAVAADESARSAHDVLRIAREGTASVINI 269 (365)
T ss_dssp SCEEESTTCSSHHHHHHHHHHTCCSEEEE
T ss_pred CCEEECCCCCCHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998778998877
|
| >4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00059 Score=61.69 Aligned_cols=96 Identities=7% Similarity=0.041 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++...+.++++++++ ++++.+-..-+|+.++++++++.+++.++.+|. + .. ++-|++..+++++.+++
T Consensus 204 ~~~d~~~v~avR~a~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~i 273 (421)
T 4hnl_A 204 METTLKMFAAIKEKYGNQFQMLHDVHERLHPNQAIQFAKAAEPYQLFFLE-------D--IL-PPDQSHWLTQLRSQSAT 273 (421)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEECTTCSCHHHHHHHHHHHGGGCCSEEE-------C--CS-CGGGGGGHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhCCCceEeccccccCCHHHHHHHHHHhhhhhhcccc-------c--CC-cccchHHHHHHHhcCCC
Confidence 456678888888887 578888888889999999999999999999986 2 11 24588999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.-.+.++.++.++++...+|.|++
T Consensus 274 pIa~dE~~~~~~~~~~~i~~~a~d~v~~ 301 (421)
T 4hnl_A 274 PIATGELFNNPMEWQELVKNRQIDFMRA 301 (421)
T ss_dssp CEEECTTCCSGGGTHHHHHTTCCSEECC
T ss_pred CeecCcceehhHHHHHHHhcCCceEEEe
Confidence 9999999999999999998777898875
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0032 Score=52.42 Aligned_cols=101 Identities=11% Similarity=0.122 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC---CChHHHHHHHHHHHHcCCCEEEEecCCC----CCcCCCCCcccHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTR----DEKDGKKFRADWNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g---~~~~~~~~~a~~l~~~G~~~i~vh~rt~----~~~~~~~~~~~~~~i~~i 75 (230)
+.+.+.+-+.++++.++- ..+|+=+. .+.++....++...++|+|+|--+.... ....+..+++..+.++.+
T Consensus 96 ~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm 174 (226)
T 1vcv_A 96 RWAEVRRDLISVVGAAGG-RVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAI 174 (226)
T ss_dssp CHHHHHHHHHHHHHHTTT-SEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-CCceEEEeccCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHH
Confidence 567778888888887632 24553221 2456777889999999999998653322 000111345666666666
Q ss_pred Hhh---CC--ccEEEcCCCCCHHHHHHHHHhh---CCc
Q 026945 76 KNA---LR--IPVLANGNVRHMEDVQKCLEET---GCE 105 (230)
Q Consensus 76 ~~~---~~--ipvi~nGgI~s~~da~~~l~~~---gad 105 (230)
++. ++ +||-++|||+|.+++.++++ . |++
T Consensus 175 ~~~i~~~g~~v~vKaaGGirt~~~al~~i~-a~~~Ga~ 211 (226)
T 1vcv_A 175 ARYIKEKGYRLGVKMAGGIRTREQAKAIVD-AIGWGED 211 (226)
T ss_dssp HHHHHHHTCCCEEEEESSCCSHHHHHHHHH-HHCSCSC
T ss_pred HHHHHHhCCCceEEEeCCCCCHHHHHHHHH-HHHCCCC
Confidence 655 55 99999999999999999997 5 776
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0011 Score=55.13 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=75.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nG 87 (230)
++++..++ .+.|+.+-+. +.. + +..+.+.|+|+|-+++ .. ..+ ..++++.++..+ ++|+++.|
T Consensus 101 ~v~~~ar~-~g~~~i~Gv~---t~~---e-~~~A~~~Gad~vk~Fp---a~---~~g--G~~~lk~l~~~~~~ipvvaiG 164 (224)
T 1vhc_A 101 KIVKLCQD-LNFPITPGVN---NPM---A-IEIALEMGISAVKFFP---AE---ASG--GVKMIKALLGPYAQLQIMPTG 164 (224)
T ss_dssp HHHHHHHH-TTCCEECEEC---SHH---H-HHHHHHTTCCEEEETT---TT---TTT--HHHHHHHHHTTTTTCEEEEBS
T ss_pred HHHHHHHH-hCCCEEeccC---CHH---H-HHHHHHCCCCEEEEee---Cc---ccc--CHHHHHHHHhhCCCCeEEEEC
Confidence 34555555 5666654332 222 2 4566789999999966 11 111 258899999888 79999999
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK 156 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~ 156 (230)
|| +++++.++++..|+++|. |+.+...+.+-. + .+....+.++++++...+
T Consensus 165 GI-~~~N~~~~l~agga~~v~-gS~i~~~~~i~~----~------------~~~~i~~~a~~~~~~~~~ 215 (224)
T 1vhc_A 165 GI-GLHNIRDYLAIPNIVACG-GSWFVEKKLIQS----N------------NWDEIGRLVREVIDIIKE 215 (224)
T ss_dssp SC-CTTTHHHHHTSTTBCCEE-ECGGGCHHHHHT----T------------CHHHHHHHHHHHHHHHTC
T ss_pred Cc-CHHHHHHHHhcCCCEEEE-EchhcCcchhcc----C------------CHHHHHHHHHHHHHHHHh
Confidence 99 578999999744999999 887776655411 1 233456677777776543
|
| >4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0024 Score=58.15 Aligned_cols=98 Identities=8% Similarity=0.005 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-- 78 (230)
+++.-.+.++++++++ ++++.+...-+|+..+++++++.+++.++.+|. | .. .+-|++..+++++.
T Consensus 227 ~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~L~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~l~ 296 (441)
T 4a35_A 227 DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVPEAVEWMSKLAKFKPLWIE-------E--PT-SPDDILGHATISKALV 296 (441)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE-------C--CS-CTTCHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHhhcccCccEEe-------C--CC-CcccHHHHHHHHHhcc
Confidence 4566677888898876 688999999899999999999999999999885 2 11 24578888999887
Q ss_pred -CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 79 -LRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 79 -~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+++||.+.-.+.+..++.++++...+|.|++-
T Consensus 297 ~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d 329 (441)
T 4a35_A 297 PLGIGIATGEQCHNRVIFKQLLQAKALQFLQID 329 (441)
T ss_dssp GGTCEEEECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred CCCCCEEeCCccccHHHHHHHHHcCCCCEEEEC
Confidence 78999999999999999999987789988773
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0018 Score=54.70 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++++.++++|+++|+|-.-.. .+.| ..+.++.+++.+++||+.-+.|.+..++..++. .|||+|.++-.
T Consensus 65 ~~p~~~A~~~~~~GA~~isvlt~~~----~f~G--~~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~-~GAD~VlL~~~ 137 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSVLTEPH----RFGG--SLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAALLIVA 137 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCCS----SSCC--CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEEHH
T ss_pred CCHHHHHHHHHHcCCCEEEEecchh----hhcc--CHHHHHHHHHhcCCCEEECCcCCCHHHHHHHHH-cCCCEEEECcc
Confidence 4678999999999999999843211 1222 467889999999999999999999999988776 89999999999
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 138 ~l~ 140 (254)
T 1vc4_A 138 LLG 140 (254)
T ss_dssp HHG
T ss_pred chH
Confidence 887
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0007 Score=60.22 Aligned_cols=70 Identities=19% Similarity=0.284 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+.+.++.+.++|++.|++|.-.. + ...-|+.++++++.. ++||++ |+|.|++++..+.+ .|||+|.+|
T Consensus 99 ~~~~e~~~~a~~aGvdvI~id~a~G-----~-~~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~-aGaD~I~Vg 169 (361)
T 3r2g_A 99 ENELQRAEALRDAGADFFCVDVAHA-----H-AKYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLAS-CGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCC-----S-SHHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCC-----C-cHhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHH-cCCCEEEEc
Confidence 5678899999999999999975221 1 123478999999986 789887 77999999998886 899999985
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00061 Score=56.35 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=51.5
Q ss_pred HHHHHcCCCEEEEecCCCCCcCC---CCCccc-H-HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDG---KKFRAD-W-NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~---~~~~~~-~-~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+.+.+.|.+.|.+++|+.... | .+...+ . ...+.+++.. ++||++-|||++++++..+.+ .|+|||.+|+++
T Consensus 125 ~~~~~~~~~~i~~~~~~~iGt-G~~~~t~~~~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~-~gaDgvlVGsAi 202 (219)
T 2h6r_A 125 KAVAALSPDCIAVEPPELIGT-GIPVSKANPEVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALD-LGAEGVLLASGV 202 (219)
T ss_dssp HHHTTTCCSEEEECCCC---------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHT-TTCCCEEESHHH
T ss_pred HHHHhCCCCEEEEEecccccc-CCCCccCCHHHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhh-CCCCEEEEcHHH
Confidence 344556778888887764211 1 011112 2 3344455544 799999999999999998765 899999999998
Q ss_pred hhCCccc
Q 026945 114 LENPALF 120 (230)
Q Consensus 114 l~nP~lf 120 (230)
+.-++..
T Consensus 203 ~~~~d~~ 209 (219)
T 2h6r_A 203 VKAKNVE 209 (219)
T ss_dssp HTCSSHH
T ss_pred hCcccHH
Confidence 8866643
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0032 Score=54.52 Aligned_cols=91 Identities=20% Similarity=0.230 Sum_probs=62.5
Q ss_pred HHHHHHHhhcCCc-eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEE
Q 026945 8 KSLVEKLALNLNV-PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~~~-pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi 84 (230)
.+-++++++...- +|.+-+. +. +-++...++|+|+|-++. .+.+.++++++.+ ++||.
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~---tl----ee~~eA~~aGaD~I~ld~------------~~~e~l~~~v~~~~~~~~I~ 256 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVE---NL----DELDDALKAGADIIMLDN------------FNTDQMREAVKRVNGQARLE 256 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEESS------------CCHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHHhCCCCcEEEEeC---CH----HHHHHHHHcCCCEEEECC------------CCHHHHHHHHHHhCCCCeEE
Confidence 4455566555432 4555443 22 224445678999999865 2346666666666 59999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||| +++.+.++.+ +|+|++.+|.....-|++
T Consensus 257 ASGGI-t~~~i~~~a~-~GvD~isvGsli~~a~~~ 289 (296)
T 1qap_A 257 VSGNV-TAETLREFAE-TGVDFISVGALTKHVRAL 289 (296)
T ss_dssp ECCCS-CHHHHHHHHH-TTCSEEECSHHHHEEECC
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCCCC
Confidence 99999 8999999886 899999999865555543
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=55.80 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=61.3
Q ss_pred HHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-----C
Q 026945 8 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----R 80 (230)
Q Consensus 8 ~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ 80 (230)
.+-++++++..+ +++.+-+. +.++ ++...++|+|+|-++.. +.+.++++++.+ +
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~ 229 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECE---SFEE----AKNAMNAGADIVMCDNL------------SVLETKEIAAYRDAHYPF 229 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEES---SHHH----HHHHHHHTCSEEEEETC------------CHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCCceEEEEcC---CHHH----HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCC
Confidence 445666666553 35555443 2222 34444689999998752 124444433332 3
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||.++||| +++.+.++.+ +|+|++.+|......|++
T Consensus 230 ~~i~AsGGI-~~~ni~~~~~-aGaD~i~vGs~i~~a~~~ 266 (273)
T 2b7n_A 230 VLLEASGNI-SLESINAYAK-SGVDAISVGALIHQATFI 266 (273)
T ss_dssp CEEEEESSC-CTTTHHHHHT-TTCSEEECTHHHHTCCCC
T ss_pred cEEEEECCC-CHHHHHHHHH-cCCcEEEEcHHhcCCCCC
Confidence 899999999 8999999886 899999999987766664
|
| >4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0033 Score=55.75 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+-..-+|+.+++.++++.+++.|+.+|. | .. .+-|++..+++++.++
T Consensus 170 ~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 239 (378)
T 4hpn_A 170 GVEEDLRVIAAVREAIGPDMRLMIDANHGYTVTEAITLGDRAAGFGIDWFE-------E--PV-VPEQLDAYARVRAGQP 239 (378)
T ss_dssp CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCHHHHHHHHHHHGGGCCSCEE-------C--CS-CTTCHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhcCCcEEEEEecCcccCHHHHHHHHhhhhhcccchhh-------c--CC-CccchhhhHHHHhhCC
Confidence 4555567788888876 577777777789989999999999999988876 2 11 2458999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.-.+.+..++.++++...+|.|.+
T Consensus 240 ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 268 (378)
T 4hpn_A 240 IPVAGGETWHGRYGMWQALSAGAVDILQP 268 (378)
T ss_dssp SCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred ceeeCCcCccchHhHHHHHHcCCCCEEee
Confidence 99999889999999999998777887754
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0082 Score=53.36 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=69.9
Q ss_pred HHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC----------------------cC--------
Q 026945 12 EKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----------------------KD-------- 61 (230)
Q Consensus 12 ~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~----------------------~~-------- 61 (230)
+.+......|.++.+-.+.+.+...++++.++++|++.|.|+--+... ..
T Consensus 115 eev~~~~~~~~~~QLy~~~d~~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~ 194 (370)
T 1gox_A 115 EEVASTGPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDK 194 (370)
T ss_dssp HHHHTTCCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC----
T ss_pred HHHHhhcCCCceEEEecCCCchHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhcccc
Confidence 334333335667776666676778899999999999999887432110 00
Q ss_pred ------------CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 ------------GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 ------------~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+...|+.++++++.+++||+. +++.+++++..+.+ .|+|+|.++
T Consensus 195 ~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~v-K~~~~~e~a~~a~~-~Gad~I~vs 253 (370)
T 1gox_A 195 ANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILV-KGVITAEDARLAVQ-HGAAGIIVS 253 (370)
T ss_dssp -----HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEE-ECCCSHHHHHHHHH-TTCSEEEEC
T ss_pred ccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEE-EecCCHHHHHHHHH-cCCCEEEEC
Confidence 001234788999999999999996 67789999998886 899999884
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.003 Score=56.23 Aligned_cols=97 Identities=18% Similarity=0.296 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-Cc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 81 (230)
+++...+.++.+++.-.++|.+-+... .+..+.++.+.++|++.|+|+.-. +. .....+.++++++.. ++
T Consensus 80 s~e~~~~~i~~vk~~~~l~vga~vg~~---~~~~~~~~~lieaGvd~I~idta~-----G~-~~~~~~~I~~ik~~~p~v 150 (366)
T 4fo4_A 80 SIEQQAAQVHQVKISGGLRVGAAVGAA---PGNEERVKALVEAGVDVLLIDSSH-----GH-SEGVLQRIRETRAAYPHL 150 (366)
T ss_dssp CHHHHHHHHHHHHTTTSCCCEEECCSC---TTCHHHHHHHHHTTCSEEEEECSC-----TT-SHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHhcCceeEEEEeccC---hhHHHHHHHHHhCCCCEEEEeCCC-----CC-CHHHHHHHHHHHHhcCCC
Confidence 577778888888875444454443322 235677899999999999986421 11 122346788898887 78
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||++ |.+.|++++.++.+ .|||+|.+|
T Consensus 151 ~Vi~-G~v~t~e~A~~a~~-aGAD~I~vG 177 (366)
T 4fo4_A 151 EIIG-GNVATAEGARALIE-AGVSAVKVG 177 (366)
T ss_dssp EEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred ceEe-eeeCCHHHHHHHHH-cCCCEEEEe
Confidence 8877 78999999998876 899999995
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00081 Score=62.89 Aligned_cols=82 Identities=13% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHHHHcC---CCEEEEecCCCCC-cCCCC-CcccHHHHHHHHhh------CCccEEEcCCCCCHHHHHHHHHh----
Q 026945 37 KYAKMLEDAG---CSLLAVHGRTRDE-KDGKK-FRADWNAIKAVKNA------LRIPVLANGNVRHMEDVQKCLEE---- 101 (230)
Q Consensus 37 ~~a~~l~~~G---~~~i~vh~rt~~~-~~~~~-~~~~~~~i~~i~~~------~~ipvi~nGgI~s~~da~~~l~~---- 101 (230)
+-+....+.| +|+|.+.+-.... +.... .+..++.++++++. .++||++-||| +++++.++++.
T Consensus 119 eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~~~~~ 197 (540)
T 3nl6_A 119 EEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQCVSS 197 (540)
T ss_dssp HHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHHCBCT
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHhhccc
Confidence 4456677889 9999997654332 12222 34558888888765 48999999999 78999999863
Q ss_pred ---hCCcEEEEehhhhhCCcc
Q 026945 102 ---TGCEGVLSAESLLENPAL 119 (230)
Q Consensus 102 ---~gadgVmigR~~l~nP~l 119 (230)
.|+|||.++++++..|+.
T Consensus 198 g~~~GadgvAVvsaI~~a~dp 218 (540)
T 3nl6_A 198 NGKRSLDGICVVSDIIASLDA 218 (540)
T ss_dssp TSSCBCSCEEESHHHHTCTTH
T ss_pred ccccCceEEEEeHHHhcCCCH
Confidence 689999999999986664
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0016 Score=55.79 Aligned_cols=77 Identities=19% Similarity=0.180 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|+++|.|-.-... +.| ..+.++.+++.+++||+..+.|.++.++.++.. .|||+|.++-.
T Consensus 79 ~dp~~~A~~y~~~GA~~IsVltd~~~----f~G--s~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~-~GAD~VlLi~a 151 (272)
T 3tsm_A 79 FDPPALAKAYEEGGAACLSVLTDTPS----FQG--APEFLTAARQACSLPALRKDFLFDPYQVYEARS-WGADCILIIMA 151 (272)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCSTT----TCC--CHHHHHHHHHTSSSCEEEESCCCSTHHHHHHHH-TTCSEEEEETT
T ss_pred CCHHHHHHHHHHCCCCEEEEeccccc----cCC--CHHHHHHHHHhcCCCEEECCccCCHHHHHHHHH-cCCCEEEEccc
Confidence 36789999999999999988652111 222 568899999999999999999999999998875 89999999887
Q ss_pred hhhC
Q 026945 113 LLEN 116 (230)
Q Consensus 113 ~l~n 116 (230)
++.+
T Consensus 152 ~L~~ 155 (272)
T 3tsm_A 152 SVDD 155 (272)
T ss_dssp TSCH
T ss_pred ccCH
Confidence 7743
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0045 Score=50.40 Aligned_cols=106 Identities=10% Similarity=0.132 Sum_probs=70.2
Q ss_pred HHHHHhhc--CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--------C-----cC-------------
Q 026945 10 LVEKLALN--LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------E-----KD------------- 61 (230)
Q Consensus 10 iv~~v~~~--~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--------~-----~~------------- 61 (230)
+++++++. ..+++.+|+- +-......+++.+.++|+|++|+|+-... . ..
T Consensus 42 ~i~~lr~~~~~~v~~D~kl~--DI~~t~~~~v~~~~~~Gad~vtvh~~~g~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~ 119 (208)
T 2czd_A 42 IIRRLKEETGVEIIADLKLA--DIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINP 119 (208)
T ss_dssp HHHHHHHHHCCEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGG
T ss_pred HHHHHHHcCCCEEEEEeeeC--chHHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHhCCcEEEEecCCcchhhHHHH
Confidence 56667665 5677777774 22244567888899999999999963211 0 00
Q ss_pred ------------CCC----CcccHHHHHHHHhhCCc-cEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 62 ------------GKK----FRADWNAIKAVKNALRI-PVLANGNVRHM-EDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 62 ------------~~~----~~~~~~~i~~i~~~~~i-pvi~nGgI~s~-~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|.. .+...+.++++++..+. +++..|||+.. .++.++++ .|+|++.+||+++..+.
T Consensus 120 ~v~~~~~~a~~~G~~G~~~~~~~~~~i~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~-aGad~vvvGr~I~~a~d 193 (208)
T 2czd_A 120 LTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKILAPGIGAQGGKAKDAVK-AGADYIIVGRAIYNAPN 193 (208)
T ss_dssp GHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEEEECCCCSSTTHHHHHHH-HTCSEEEECHHHHTSSS
T ss_pred HHHHHHHHHHHhCCcEEEECCCChHHHHHHHHhCCCCeEEEECCCCCCCCCHHHHHH-cCCCEEEEChHHhcCCC
Confidence 000 01123456777776653 67799999852 36778886 79999999999988654
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0047 Score=51.43 Aligned_cols=102 Identities=16% Similarity=0.256 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
++..+++.+...-++-|+|----+. +.....++|+.+++.|+..|.+. ..+.++++++.+++|
T Consensus 6 ~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~--------------~~~~i~~ir~~v~~P 71 (232)
T 3igs_A 6 LLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE--------------GIDNLRMTRSLVSVP 71 (232)
T ss_dssp HHHHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE--------------SHHHHHHHHTTCCSC
T ss_pred HHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC--------------CHHHHHHHHHhcCCC
Confidence 4556666663333556666332221 35678999999999999998861 247899999999999
Q ss_pred EEE-c----CC--C---CCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 83 VLA-N----GN--V---RHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 83 vi~-n----Gg--I---~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
|++ + || + .+.+++.++++ .|+|.|.++-++..+|..+.+
T Consensus 72 vig~~k~d~~~~~~~I~~~~~~i~~~~~-~Gad~V~l~~~~~~~p~~l~~ 120 (232)
T 3igs_A 72 IIGIIKRDLDESPVRITPFLDDVDALAQ-AGAAIIAVDGTARQRPVAVEA 120 (232)
T ss_dssp EEEECBCCCSSCCCCBSCSHHHHHHHHH-HTCSEEEEECCSSCCSSCHHH
T ss_pred EEEEEeecCCCcceEeCccHHHHHHHHH-cCCCEEEECccccCCHHHHHH
Confidence 985 2 33 3 46678888775 899999999888888865443
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00057 Score=72.45 Aligned_cols=87 Identities=10% Similarity=0.095 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHcCCCEE---EEecCCCCCcCCCC--CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH-------
Q 026945 33 QDTIKYAKMLEDAGCSLL---AVHGRTRDEKDGKK--FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE------- 100 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i---~vh~rt~~~~~~~~--~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~------- 100 (230)
...+..+...+++|+|++ .+.|.......+.. ...-+..+.+|++.++||||+.|||.+.+++..+|.
T Consensus 710 ~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~~~ipviaaGGi~dg~~~~aaL~g~w~~~~ 789 (2051)
T 2uv8_G 710 IDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRHPNIMLIFGSGFGSADDTYPYLTGEWSTKF 789 (2051)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTCTTBCCEEESSCCSHHHHTHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHcccccccc
Confidence 345566677888899993 33343322211110 012234578899999999999999999999999993
Q ss_pred ---hhCCcEEEEehhhhhCCcc
Q 026945 101 ---ETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 101 ---~~gadgVmigR~~l~nP~l 119 (230)
..|||||.+|.-++.-..-
T Consensus 790 g~~~lgadGv~~GTrf~~t~Ea 811 (2051)
T 2uv8_G 790 DYPPMPFDGFLFGSRVMIAKEV 811 (2051)
T ss_dssp TCCCCCCSCEECSGGGTTSTTS
T ss_pred CccCCCCceeeechHHHhCccc
Confidence 3799999999999987653
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00059 Score=56.13 Aligned_cols=102 Identities=15% Similarity=0.109 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--CCc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~i 81 (230)
+.+.++++.+++. +++..+.+ +++ +. +-++.+.+.|++++.++.-+..+..+. ....+.+.++++. .++
T Consensus 96 ~~~~~~~~~~~~~-g~~~~~d~-l~~~T~----~~~~~~~~~g~d~v~~~~~~~~~~~g~--~~~~~~l~~i~~~~~~~~ 167 (218)
T 3jr2_A 96 ATIAACKKVADEL-NGEIQIEI-YGNWTM----QDAKAWVDLGITQAIYHRSRDAELAGI--GWTTDDLDKMRQLSALGI 167 (218)
T ss_dssp HHHHHHHHHHHHH-TCEEEEEC-CSSCCH----HHHHHHHHTTCCEEEEECCHHHHHHTC--CSCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh-CCccceee-eecCCH----HHHHHHHHcCccceeeeeccccccCCC--cCCHHHHHHHHHHhCCCC
Confidence 3456777777654 55444322 333 22 234455666999987753211111111 1123344444443 489
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
|+++.||| +++.+.++++ .|||+|.+||++...
T Consensus 168 pi~v~GGI-~~~~~~~~~~-aGAd~vvvGsaI~~a 200 (218)
T 3jr2_A 168 ELSITGGI-VPEDIYLFEG-IKTKTFIAGRALAGA 200 (218)
T ss_dssp EEEEESSC-CGGGGGGGTT-SCEEEEEESGGGSHH
T ss_pred CEEEECCC-CHHHHHHHHH-cCCCEEEEchhhcCC
Confidence 99999999 5888888886 899999999987754
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.005 Score=51.45 Aligned_cols=98 Identities=21% Similarity=0.247 Sum_probs=74.4
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
.++++.+.+. ||..=+|. .+.+++.++++.+.+.|+..|.|.-|+.. -.+.|+++++.++-.+++.|
T Consensus 25 ~~~~~~l~~~---~vv~Vir~-~~~~~a~~~a~al~~gGi~~iEvt~~t~~---------a~e~I~~l~~~~~~~~iGaG 91 (232)
T 4e38_A 25 STINNQLKAL---KVIPVIAI-DNAEDIIPLGKVLAENGLPAAEITFRSDA---------AVEAIRLLRQAQPEMLIGAG 91 (232)
T ss_dssp HHHHHHHHHH---CEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHhC---CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------HHHHHHHHHHhCCCCEEeEC
Confidence 3455555543 34433665 45678999999999999999999766532 35889999998877889999
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
.|.+.++++.+++ .|||.|+..- .||.+...
T Consensus 92 TVlt~~~a~~Ai~-AGA~fIvsP~---~~~~vi~~ 122 (232)
T 4e38_A 92 TILNGEQALAAKE-AGATFVVSPG---FNPNTVRA 122 (232)
T ss_dssp CCCSHHHHHHHHH-HTCSEEECSS---CCHHHHHH
T ss_pred CcCCHHHHHHHHH-cCCCEEEeCC---CCHHHHHH
Confidence 9999999999997 8999998752 45555543
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0023 Score=52.36 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--Ccc
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ip 82 (230)
+.+.++++.+++ .+.++.+++-...+ . .-++.+++.|.+.+.+|--......+..| ..+.++.+++.. ++|
T Consensus 93 ~~l~~~~~~~~~-~g~~~~~~ll~~~t-~---~~~~~l~~~~~~~~vl~~a~~~~~~G~~g--~~~~i~~lr~~~~~~~~ 165 (216)
T 1q6o_A 93 NTAKGALDVAKE-FNGDVQIELTGYWT-W---EQAQQWRDAGIGQVVYHRSRDAQAAGVAW--GEADITAIKRLSDMGFK 165 (216)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEECSCCC-H---HHHHHHHHTTCCEEEEECCHHHHHTTCCC--CHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHH-cCCCceeeeeeCCC-h---hhHHHHHhcCcHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhcCCCCc
Confidence 345666666665 36776665531333 1 12344556688777776422222223333 346677777765 688
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
|++.|||+ ++.+.++++ .|+|++.+||++...++
T Consensus 166 i~v~GGI~-~~~~~~~~~-aGad~ivvG~~I~~a~d 199 (216)
T 1q6o_A 166 VTVTGGLA-LEDLPLFKG-IPIHVFIAGRSIRDAAS 199 (216)
T ss_dssp EEEESSCC-GGGGGGGTT-SCCSEEEESHHHHTSSC
T ss_pred EEEECCcC-hhhHHHHHH-cCCCEEEEeehhcCCCC
Confidence 99999997 788888775 89999999999987554
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0017 Score=55.01 Aligned_cols=81 Identities=16% Similarity=0.272 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEec-CCCCCc-----------------CCCCCcc------cHHHHHHHHhhCCccEEEcCC
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHG-RTRDEK-----------------DGKKFRA------DWNAIKAVKNALRIPVLANGN 88 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~-rt~~~~-----------------~~~~~~~------~~~~i~~i~~~~~ipvi~nGg 88 (230)
++..++.+.+.+.|++.|.+-. .|...+ .+.+|.. -.+.++++++..++||++.+|
T Consensus 128 eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv~vGfG 207 (252)
T 3tha_A 128 EESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFG 207 (252)
T ss_dssp GGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTCCSCEEEESS
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEcC
Confidence 4567788888888888776433 221111 1122221 145788889888999999999
Q ss_pred CCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 89 VRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
|.+++++.++.+ +||||.+|.+++.
T Consensus 208 Ist~e~a~~~~~--~ADGVIVGSAiVk 232 (252)
T 3tha_A 208 IQNNQDVKRMRK--VADGVIVGTSIVK 232 (252)
T ss_dssp CCSHHHHHHHTT--TSSEEEECHHHHH
T ss_pred cCCHHHHHHHHh--cCCEEEECHHHHH
Confidence 999999998764 6999999998874
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0019 Score=53.89 Aligned_cols=101 Identities=9% Similarity=0.132 Sum_probs=66.3
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE---ecCCCCCcCCCCCcccHHHHHHHHhhC----
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV---HGRTRDEKDGKKFRADWNAIKAVKNAL---- 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v---h~rt~~~~~~~~~~~~~~~i~~i~~~~---- 79 (230)
+.++++.+++. ++-+.+=+..+...+ .++.+.+ ++|+|.+ ++.+..|. + .+..++-++++++..
T Consensus 95 ~~~~i~~i~~~-G~k~gv~lnp~tp~~----~~~~~l~-~~D~VlvmsV~pGfggQ~--f-~~~~l~kI~~lr~~~~~~~ 165 (231)
T 3ctl_A 95 AFRLIDEIRRH-DMKVGLILNPETPVE----AMKYYIH-KADKITVMTVDPGFAGQP--F-IPEMLDKLAELKAWREREG 165 (231)
T ss_dssp HHHHHHHHHHT-TCEEEEEECTTCCGG----GGTTTGG-GCSEEEEESSCTTCSSCC--C-CTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCeEEEEEECCCcHH----HHHHHHh-cCCEEEEeeeccCcCCcc--c-cHHHHHHHHHHHHHHhccC
Confidence 45677777663 555556565443322 2233322 6899874 44444443 2 244567777777654
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe-hhhhhCCc
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSA-ESLLENPA 118 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmig-R~~l~nP~ 118 (230)
+++|.+-|||+ .+.+.++.+ .|||.+.+| +++...++
T Consensus 166 ~~~~I~VdGGI~-~~~~~~~~~-aGAd~~V~G~saif~~~d 204 (231)
T 3ctl_A 166 LEYEIEVDGSCN-QATYEKLMA-AGADVFIVGTSGLFNHAE 204 (231)
T ss_dssp CCCEEEEESCCS-TTTHHHHHH-HTCCEEEECTTTTGGGCS
T ss_pred CCceEEEECCcC-HHHHHHHHH-cCCCEEEEccHHHhCCCC
Confidence 68999999996 678888876 899999999 98887554
|
| >4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0048 Score=55.15 Aligned_cols=98 Identities=8% Similarity=0.038 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+-..-+|+..++.++++.+++.++.+|. | .....-+++..+++++.++
T Consensus 191 ~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~~~~~d~~~~~~l~~~~~ 261 (388)
T 4h83_A 191 SAAEDAARITAAREAAGDDFIICIDANQGYKPAVAVDLSRRIADLNIRWFE-------E--PVEWHNDKRSMRDVRYQGS 261 (388)
T ss_dssp CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCHHHHHHHHHHTTTSCCCCEE-------S--CBCSTTHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEecCcCCCHHHHHHHHHHhhhcCcceee-------c--CcccccchHHHHHHHhhcC
Confidence 4455566788888876 577888888889999999999999999988876 2 1211235788999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.|..++.++++...+|.|.+
T Consensus 262 ipIa~dE~~~~~~~~~~~i~~~a~d~i~~ 290 (388)
T 4h83_A 262 VPVCAGQTEFSASGCRDLMETGAIDVCNF 290 (388)
T ss_dssp SCEEECTTCSSHHHHHHHHHHTCCSEECC
T ss_pred CCccCCccccChHhHHHHHHcCCCCeEee
Confidence 99999889999999999998777887754
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0062 Score=52.41 Aligned_cols=90 Identities=20% Similarity=0.303 Sum_probs=60.0
Q ss_pred HHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEE
Q 026945 9 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL 84 (230)
Q Consensus 9 eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi 84 (230)
+-++.+++.. +.+|.+-++ + .+-++.+.++|+|+|-++..+. +.++++.+.+ ++|++
T Consensus 184 ~av~~ar~~~~~~~~IgVev~---t----~eea~eA~~aGaD~I~ld~~~~------------~~~k~av~~v~~~ipi~ 244 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEVR---S----LEELEEALEAGADLILLDNFPL------------EALREAVRRVGGRVPLE 244 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEES---S----HHHHHHHHHHTCSEEEEESCCH------------HHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHhCCCCCEEEEEeC---C----HHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHHhCCCCeEE
Confidence 3455555544 245555333 2 2334556678999999988432 2233333333 69999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||| +++.+.++.+ +|+|+|.+|.....-|++
T Consensus 245 AsGGI-t~eni~~~a~-tGvD~IsVgs~~~~a~~~ 277 (286)
T 1x1o_A 245 ASGNM-TLERAKAAAE-AGVDYVSVGALTHSAKAL 277 (286)
T ss_dssp EESSC-CHHHHHHHHH-HTCSEEECTHHHHSCCCC
T ss_pred EEcCC-CHHHHHHHHH-cCCCEEEEcHHHcCCCce
Confidence 99999 5999998876 999999998866665654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=53.76 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=55.1
Q ss_pred HHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 39 AKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 39 a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+....+.|+|+|.+++ .. ..+ ..++++.++..+ ++|+++.||| +++++.++++..|+++|. |+.+...+
T Consensus 122 ~~~A~~~Gad~v~~Fp---a~---~~g--G~~~lk~i~~~~~~ipvvaiGGI-~~~n~~~~l~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 122 LMLGMDYGLKEFKFFP---AE---ANG--GVKALQAIAGPFSQVRFCPTGGI-SPANYRDYLALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp HHHHHHTTCCEEEETT---TT---TTT--HHHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred HHHHHHCCCCEEEEec---Cc---ccc--CHHHHHHHhhhCCCCeEEEECCC-CHHHHHHHHhcCCCeEEE-eccccChh
Confidence 4556789999999966 11 111 258899999888 7999999999 578999999744999999 98777666
Q ss_pred cc
Q 026945 118 AL 119 (230)
Q Consensus 118 ~l 119 (230)
.+
T Consensus 192 ~~ 193 (214)
T 1wbh_A 192 AL 193 (214)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=56.40 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+++.|+++|.|..-... +.| ..+.++.+++.+++||+..+.|.+..++.++.. .|||+|.++-+
T Consensus 72 ~~p~~~A~~y~~~GA~~isvltd~~~----f~G--s~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~-~GAD~VlLi~a 144 (272)
T 3qja_A 72 ADPAKLAQAYQDGGARIVSVVTEQRR----FQG--SLDDLDAVRASVSIPVLRKDFVVQPYQIHEARA-HGADMLLLIVA 144 (272)
T ss_dssp -CHHHHHHHHHHTTCSEEEEECCGGG----HHH--HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEEEGG
T ss_pred CCHHHHHHHHHHcCCCEEEEecChhh----cCC--CHHHHHHHHHhCCCCEEECccccCHHHHHHHHH-cCCCEEEEecc
Confidence 36789999999999999998742211 112 357889999999999999888999988988886 89999999988
Q ss_pred hhhCCc
Q 026945 113 LLENPA 118 (230)
Q Consensus 113 ~l~nP~ 118 (230)
.+.++.
T Consensus 145 ~l~~~~ 150 (272)
T 3qja_A 145 ALEQSV 150 (272)
T ss_dssp GSCHHH
T ss_pred cCCHHH
Confidence 776544
|
| >2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0097 Score=52.54 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+-|++..+++++.++
T Consensus 170 ~~~~d~~~v~avr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~ 239 (370)
T 2chr_A 170 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIE-------Q--PV-GRENTQALRRLSDNNR 239 (370)
T ss_dssp CHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEEE-------C--CS-CSSCHHHHHHHHHHCS
T ss_pred ChHHHHHHHHHHHHhcCCCcEEEecCCCCCCHHHHHHHHHHHHhcCCceec-------C--CC-ChhhhhhhhHHhhhcc
Confidence 4556667788888876 567777777789989999999999999998876 2 11 2457899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|++
T Consensus 240 ipIa~dE~~~~~~~~~~~~~~~a~d~i~~ 268 (370)
T 2chr_A 240 VAIMADESLSTLASAFDLARDRSVDVFSL 268 (370)
T ss_dssp SEEEESSSCCSHHHHHHHHTTTCCSEECC
T ss_pred CCccCCccCCCHHHHHHHHHcCCCcEEEe
Confidence 99999889999999999998777887754
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.013 Score=49.89 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=72.4
Q ss_pred HHHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccH
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADW 69 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~ 69 (230)
.+.+.++.+++.-...+..=+-.| ++.+.+.++++.|+++|+|.|.+---..+-. +|.+-..-+
T Consensus 4 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~ 83 (267)
T 3vnd_A 4 RYQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF 83 (267)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 466677777655444555555555 5778999999999999999999963221110 111001125
Q ss_pred HHHHHHHhh-CCccEEEcCCCC-----CHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 70 NAIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 70 ~~i~~i~~~-~~ipvi~nGgI~-----s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.++++++. .++||+.-|-.+ ..+...+.+.+.|+||+.+.--.+.
T Consensus 84 ~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~e 135 (267)
T 3vnd_A 84 DIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVE 135 (267)
T ss_dssp HHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGG
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHh
Confidence 788888887 789998865432 2366666677799999999544333
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0023 Score=51.72 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
-.+.++++ +++|||+.|.|+|.+++.+ ++ .||++|+.|.--|++.
T Consensus 140 ~p~~I~~v---~~~PiIaGGlI~t~edv~~-l~-aGA~aIsTs~~~LW~~ 184 (188)
T 1vkf_A 140 APKVARKI---PGRTVIAAGLVETEEEARE-IL-KHVSAISTSSRILWKM 184 (188)
T ss_dssp HHHHHTTS---TTSEEEEESCCCSHHHHHH-HT-TTSSEEEECCHHHHTC
T ss_pred hHHHHHHh---cCCCEEEECCcCCHHHHHH-HH-CCCeEEEeCCHHHhCC
Confidence 34667777 7899999999999999999 86 8999999998777764
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.005 Score=52.30 Aligned_cols=104 Identities=18% Similarity=0.097 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.+.+-+.++++.++ -+..+|+=+. .+.+.....++...++|+|+|--+... ..+++..+.++.+++
T Consensus 115 ~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~e~i~~a~~ia~eaGADfVKTSTGf------~~~gAt~e~v~lm~~ 188 (260)
T 1p1x_A 115 NEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGK------VAVNATPESARIMME 188 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSC------SSCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCC------CCCCCCHHHHHHHHH
Confidence 56677777888877653 1234555442 232335688889999999999844321 124677776665555
Q ss_pred h-------CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 78 A-------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 78 ~-------~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
. .++||-++|||+|.+++.++++ .|++ .+++.|+-
T Consensus 189 ~I~~~~~g~~v~VKaaGGIrt~~~al~~i~-aga~-------~lG~~w~~ 230 (260)
T 1p1x_A 189 VIRDMGVEKTVGFKPAGGVRTAEDAQKYLA-IADE-------LFGADWAD 230 (260)
T ss_dssp HHHHHTCTTTCEEECBSSCCSHHHHHHHHH-HHHH-------HHCTTSCS
T ss_pred HHHHhcCCCCceEEEeCCCCCHHHHHHHHH-hhhh-------hccccccc
Confidence 4 3689999999999999999997 4443 55666643
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0086 Score=51.37 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcCCceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh---
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--- 78 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--- 78 (230)
.+.+-+.++++.++ +..+|+=+. .+.+.....++...++|+|+|--+.... .+++..+.++.+++.
T Consensus 142 ~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~------~~gAT~edv~lm~~~v~~ 214 (281)
T 2a4a_A 142 EATKLTQSVKKLLT-NKILKVIIEVGELKTEDLIIKTTLAVLNGNADFIKTSTGKV------QINATPSSVEYIIKAIKE 214 (281)
T ss_dssp HHHHHHHHHHTTCT-TSEEEEECCHHHHCSHHHHHHHHHHHHTTTCSEEECCCSCS------SCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEeCCCCC------CCCCCHHHHHHHHHHHHH
Confidence 67778888888774 234565442 2323356788889999999997443211 134555544444333
Q ss_pred ---------CCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 79 ---------LRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 79 ---------~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
.+++|-++|||+|.+++.++++ .|++
T Consensus 215 ~~~~~~~tg~~vgVKaaGGIrt~e~al~~i~-aga~ 249 (281)
T 2a4a_A 215 YIKNNPEKNNKIGLKVSGGISDLNTASHYIL-LARR 249 (281)
T ss_dssp HHHHCGGGTTCCEEEEESSCCSHHHHHHHHH-HHHH
T ss_pred hhcccccCCCCceEEEeCCCCCHHHHHHHHH-Hhhh
Confidence 3689999999999999999997 4444
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0005 Score=57.23 Aligned_cols=69 Identities=19% Similarity=0.167 Sum_probs=51.7
Q ss_pred HHHHHcCCCEEEEecCCCCCcCCCCCcc-cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 40 KMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 40 ~~l~~~G~~~i~vh~rt~~~~~~~~~~~-~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
....+.|+|+|-+++ .. .. -.++++.++..+ ++|+++.||| +++.+.++++.+|+++|. |+++...+
T Consensus 133 ~~A~~~Gad~vk~FP---a~------~~~G~~~lk~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~ 201 (225)
T 1mxs_A 133 MMGYALGYRRFKLFP---AE------ISGGVAAIKAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDSS 201 (225)
T ss_dssp HHHHTTTCCEEEETT---HH------HHTHHHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHH
T ss_pred HHHHHCCCCEEEEcc---Cc------cccCHHHHHHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCch
Confidence 444567777777744 10 11 257889998888 7999999999 678999999757999999 98776655
Q ss_pred cc
Q 026945 118 AL 119 (230)
Q Consensus 118 ~l 119 (230)
++
T Consensus 202 ~i 203 (225)
T 1mxs_A 202 WI 203 (225)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.012 Score=51.56 Aligned_cols=90 Identities=17% Similarity=0.124 Sum_probs=62.9
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc--c--cHHHHHHHHhhCCccEEEc--CCCC
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR--A--DWNAIKAVKNALRIPVLAN--GNVR 90 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~--~--~~~~i~~i~~~~~ipvi~n--GgI~ 90 (230)
..+.|+.+.+..+.+.+ ++.+.++.+|+++|.+|.....+.....+. . .++.++++++.+++||+.- |...
T Consensus 114 ~~~~pv~~~i~~~~~~~---~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~ 190 (349)
T 1p0k_A 114 NPNGLIFANLGSEATAA---QAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGM 190 (349)
T ss_dssp CSSSCEEEEEETTCCHH---HHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCC
T ss_pred CCCceeEEeecCCCCHH---HHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 35789998887666544 344667789999999997644321110011 1 3578999999999999875 4557
Q ss_pred CHHHHHHHHHhhCCcEEEEe
Q 026945 91 HMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 91 s~~da~~~l~~~gadgVmig 110 (230)
+.+++..+.+ .|+|+|.+.
T Consensus 191 ~~~~a~~a~~-~Gad~I~v~ 209 (349)
T 1p0k_A 191 SKASAGKLYE-AGAAAVDIG 209 (349)
T ss_dssp CHHHHHHHHH-HTCSEEEEE
T ss_pred CHHHHHHHHH-cCCCEEEEc
Confidence 8999987775 899999884
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.018 Score=49.11 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccH
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADW 69 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~ 69 (230)
.+.+.++.+++.-...+..=+-.| ++.+.+.++++.++++|+|.|.+---..+-. ++.+-.--+
T Consensus 6 ri~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~ 85 (271)
T 3nav_A 6 RYQALFQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICF 85 (271)
T ss_dssp HHHHHHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH
Confidence 466777777665444454455555 5788999999999999999999964321110 111101125
Q ss_pred HHHHHHHhh-CCccEEEcCCC-----CCHHHHHHHHHhhCCcEEEEeh
Q 026945 70 NAIKAVKNA-LRIPVLANGNV-----RHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 70 ~~i~~i~~~-~~ipvi~nGgI-----~s~~da~~~l~~~gadgVmigR 111 (230)
+.++++++. .++|+++-|-. ...+...+...+.|+|||.+.-
T Consensus 86 ~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipD 133 (271)
T 3nav_A 86 ELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIAD 133 (271)
T ss_dssp HHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETT
T ss_pred HHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECC
Confidence 778888887 78999886633 2346666666679999999943
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.014 Score=48.48 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
++.++++.+...-++-|||----+. +.....++|+.+++.|+..|.+. ..+.++++++.+++|
T Consensus 6 ~~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~--------------~~~~i~~ir~~v~~P 71 (229)
T 3q58_A 6 LLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIE--------------GIENLRTVRPHLSVP 71 (229)
T ss_dssp HHHHHHHHHHHHCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEE--------------SHHHHHHHGGGCCSC
T ss_pred HHHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEEC--------------CHHHHHHHHHhcCCC
Confidence 4556666663333556666332221 35678999999999999999871 247899999999999
Q ss_pred EEEc-----CC--C---CCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 83 VLAN-----GN--V---RHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 83 vi~n-----Gg--I---~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
|++. || + .+.+++.++++ .|+|.|.++-++..+|....
T Consensus 72 vig~~k~~~~~~~~~I~~~~~~i~~~~~-aGad~I~l~~~~~~~p~~l~ 119 (229)
T 3q58_A 72 IIGIIKRDLTGSPVRITPYLQDVDALAQ-AGADIIAFDASFRSRPVDID 119 (229)
T ss_dssp EEEECBCCCSSCCCCBSCSHHHHHHHHH-HTCSEEEEECCSSCCSSCHH
T ss_pred EEEEEeecCCCCceEeCccHHHHHHHHH-cCCCEEEECccccCChHHHH
Confidence 9841 22 2 35678888775 89999999888777886443
|
| >4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0086 Score=53.94 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=74.8
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
..+.++++++++ ++.+.+-..-+|+..+++++++.+++.|+.+|. | .. .+-|++..+++++.+++||.
T Consensus 218 ~~~~v~~vR~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~iE-------q--P~-~~~d~~~~~~l~~~~~iPIa 287 (412)
T 4h1z_A 218 VAKEMEILRERLGPAVRIACDMHWAHTASEAVALIKAMEPHGLWFAE-------A--PV-RTEDIDGLARVAASVSTAIA 287 (412)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECCSCCCHHHHHHHHHHHGGGCEEEEE-------C--CS-CTTCHHHHHHHHHHCSSEEE
T ss_pred HHHHHHHHHhccCCeEEEEeccccCCCHHHHHHHHHhhcccccceec-------C--CC-CccchHHHHHHHhhcCCccc
Confidence 345567777765 577777777789999999999999999988876 2 11 23478999999999999999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.=.+.+..++.++++...+|.|.+
T Consensus 288 ~dE~~~~~~~~~~~i~~~a~div~~ 312 (412)
T 4h1z_A 288 VGEEWRTVHDMVPRVARRALAIVQP 312 (412)
T ss_dssp ECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred cCCcccchHhHHHHHHcCCCCEEEe
Confidence 9889999999999998766776643
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.01 Score=51.53 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+|+.+.+.++.+++.++.|+.|-+-+.+. ..+..+.++.+.+.|++.|.+|... + ++.++.+++. +
T Consensus 51 s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~---------p--~~~~~~l~~~-g 118 (328)
T 2gjl_A 51 SPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND---------P--GEHIAEFRRH-G 118 (328)
T ss_dssp SHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC---------C--HHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC---------c--HHHHHHHHHc-C
Confidence 47888888999988777787776654310 1234577888899999999999631 1 5778888775 8
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE-eh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 111 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi-gR 111 (230)
+||+. ++.|.+++..+.+ .|+|+|.+ |.
T Consensus 119 i~vi~--~v~t~~~a~~~~~-~GaD~i~v~g~ 147 (328)
T 2gjl_A 119 VKVIH--KCTAVRHALKAER-LGVDAVSIDGF 147 (328)
T ss_dssp CEEEE--EESSHHHHHHHHH-TTCSEEEEECT
T ss_pred CCEEe--eCCCHHHHHHHHH-cCCCEEEEECC
Confidence 89885 4889999988775 89999988 54
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.003 Score=54.41 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEE
Q 026945 8 KSLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi 84 (230)
.+.++.+++..+ .+|.|=++ + .+-++.+.++|+|+|-++..+.++ -.+.++.++.. .++|+.
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV~---t----leea~eA~~aGaD~I~LDn~~~e~--------l~~av~~l~~~~~~v~ie 244 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEVE---N----LEDALRAVEAGADIVMLDNLSPEE--------VKDISRRIKDINPNVIVE 244 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESCCHHH--------HHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHhCCCCceEEEEeC---C----HHHHHHHHHcCCCEEEECCCCHHH--------HHHHHHHhhccCCCceEE
Confidence 345556655542 45655443 2 344555677999999998832211 11233333331 268999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||| +++.+.++.+ +|+|++.+|.....-|++
T Consensus 245 ASGGI-t~eni~~~a~-tGVD~IsvGslt~sa~~~ 277 (285)
T 1o4u_A 245 VSGGI-TEENVSLYDF-ETVDVISSSRLTLQEVFV 277 (285)
T ss_dssp EEECC-CTTTGGGGCC-TTCCEEEEGGGTSSCCCC
T ss_pred EECCC-CHHHHHHHHH-cCCCEEEEeHHHcCCCCc
Confidence 99999 5788887664 999999999977766654
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=49.89 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=65.7
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE-ecC--CCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-HGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v-h~r--t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++++.+ .+.||.+|.-...+.++....+..+...|...+++ |.. +.. .+ .....|...+..+++..++||++.-
T Consensus 123 l~~~a~-~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~-~y-~~~~v~L~ai~~lk~~~~~pVi~d~ 199 (262)
T 1zco_A 123 LKEVGK-VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFE-TA-TRFTLDISAVPVVKELSHLPIIVDP 199 (262)
T ss_dssp HHHHTT-SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSC-CS-SSSBCCTTHHHHHHHHBSSCEEECS
T ss_pred HHHHHh-cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-Cc-ChhhcCHHHHHHHHhhhCCCEEEEc
Confidence 444544 68999999988767888999999999999855544 632 222 12 1234688899999998899986543
Q ss_pred ----CCCC--HHHHHHHHHhhCCcEEEEeh
Q 026945 88 ----NVRH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 88 ----gI~s--~~da~~~l~~~gadgVmigR 111 (230)
|.+. +.-+..... .|++|+||=+
T Consensus 200 sH~~g~~~~v~~~~~aAva-~Ga~Gl~iE~ 228 (262)
T 1zco_A 200 SHPAGRRSLVIPLAKAAYA-IGADGIMVEV 228 (262)
T ss_dssp STTTCSGGGHHHHHHHHHH-TTCSEEEEEB
T ss_pred CCCCCccchHHHHHHHHHH-cCCCEEEEEe
Confidence 2222 122344443 7999999965
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.02 Score=50.67 Aligned_cols=89 Identities=17% Similarity=0.289 Sum_probs=65.6
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec-------CCCCCcC----------------------------CCC
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG-------RTRDEKD----------------------------GKK 64 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~-------rt~~~~~----------------------------~~~ 64 (230)
-|....+-+..|.+.+.+++++.+++|+..|.+.- |.++.++ ...
T Consensus 122 ~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d 201 (352)
T 3sgz_A 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPK 201 (352)
T ss_dssp CEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCC
T ss_pred ccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccC
Confidence 46666665555667788999999999999987742 1111000 012
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+...|+.++.+++.+++||+.-| +.+.+++..+.+ .|+|+|.+.
T Consensus 202 ~~~~w~~i~~lr~~~~~PvivK~-v~~~e~A~~a~~-~GaD~I~vs 245 (352)
T 3sgz_A 202 ASFCWNDLSLLQSITRLPIILKG-ILTKEDAELAMK-HNVQGIVVS 245 (352)
T ss_dssp TTCCHHHHHHHHHHCCSCEEEEE-ECSHHHHHHHHH-TTCSEEEEC
T ss_pred CCCCHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHH-cCCCEEEEe
Confidence 45689999999999999998754 678999998876 899999873
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0034 Score=54.39 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=58.8
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-----Cc
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-----RI 81 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~i 81 (230)
+-++++++..+ .++.+-+. +.++ ++...++|+|+|-++.. +.+.++++++.+ ++
T Consensus 185 ~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~------------~~~~l~~~v~~l~~~~~~~ 245 (299)
T 2jbm_A 185 KAVRAARQAADFALKVEVECS---SLQE----AVQAAEAGADLVLLDNF------------KPEELHPTATVLKAQFPSV 245 (299)
T ss_dssp HHHHHHHHHHTTTSCEEEEES---SHHH----HHHHHHTTCSEEEEESC------------CHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHhCCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCC------------CHHHHHHHHHHhhccCCCe
Confidence 34455555442 45555443 2222 34445689999998752 124444433332 38
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
||.++||| +++.+.++.+ +|+|++.+|......|++
T Consensus 246 ~I~ASGGI-t~~ni~~~~~-aGaD~i~vGs~i~~a~~~ 281 (299)
T 2jbm_A 246 AVEASGGI-TLDNLPQFCG-PHIDVISMGMLTQAAPAL 281 (299)
T ss_dssp EEEEESSC-CTTTHHHHCC-TTCCEEECTHHHHSCCCC
T ss_pred eEEEECCC-CHHHHHHHHH-CCCCEEEEChhhcCCCCc
Confidence 99999999 8999998875 899999999976665665
|
| >1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.013 Score=52.36 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=73.2
Q ss_pred HHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+.++++++++ ++.+.+-..-+|+.+++ ++++.+++.++.+|. | .. .+-|++..+++++.+++||.+.
T Consensus 190 ~~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ipIa~d 258 (393)
T 1wuf_A 190 IQFVEAVRKSFPKLSLMADANSAYNREDF-LLLKELDQYDLEMIE-------Q--PF-GTKDFVDHAWLQKQLKTRICLD 258 (393)
T ss_dssp HHHHHHHHTTCTTSEEEEECTTCCCGGGH-HHHHTTGGGTCSEEE-------C--CS-CSSCSHHHHHHHTTCSSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCHHHH-HHHHHHHhCCCeEEE-------C--CC-CCcCHHHHHHHHHhCCCCEEEC
Confidence 35577777766 45666666667888888 899999999999887 2 11 2457899999999999999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmi 109 (230)
-.+.+..++.++++...+|.|.+
T Consensus 259 E~~~~~~~~~~~i~~~a~d~v~i 281 (393)
T 1wuf_A 259 ENIRSVKDVEQAHSIGSCRAINL 281 (393)
T ss_dssp TTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCcCCHHHHHHHHHhCCCCEEEe
Confidence 99999999999998767898877
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0072 Score=52.27 Aligned_cols=86 Identities=19% Similarity=0.225 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCCEEEEec-----CCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDAGCSLLAVHG-----RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~-----rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.|+.++++|++.|.+-- .+..+ +.....+.+.++++++.+++||++-+++...++++.+. ..|||.| -.
T Consensus 31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~--g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ide~qil~-aaGAD~I-d~ 106 (297)
T 4adt_A 31 VEQAKIAEKAGAIGVMILENIPSELRNTD--GVARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILE-ELKVDML-DE 106 (297)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC-----CC--CCCCCCCHHHHHHHHTTCCSEEEEEEETTCHHHHHHHH-HTTCSEE-EE
T ss_pred HHHHHHHHHcCCCEEEEecCCCCcchhcC--CcccCCCHHHHHHHHHhcCCCEEEeccCCcHHHHHHHH-HcCCCEE-Ec
Confidence 4789999999999998873 22221 11113478999999999999999988888888887666 5999999 32
Q ss_pred hhhhhCCccccchhh
Q 026945 111 ESLLENPALFAGFRT 125 (230)
Q Consensus 111 R~~l~nP~lf~~~~~ 125 (230)
...+..+.+...++.
T Consensus 107 s~~~~~~~li~~i~~ 121 (297)
T 4adt_A 107 SEVLTMADEYNHINK 121 (297)
T ss_dssp ETTSCCSCSSCCCCG
T ss_pred CCCCCHHHHHHHHHh
Confidence 223455666666553
|
| >2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0085 Score=53.18 Aligned_cols=97 Identities=6% Similarity=0.061 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhcCC---ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLN---VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~---~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++...+.++++++.++ +.+.+-..-+|+.+++.++++.+++.++.+|. | .. .+.||+..+++++.+
T Consensus 189 ~~~~d~~~v~avr~~~g~~~~~l~vDaN~~~~~~~a~~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~ 258 (377)
T 2pge_A 189 DFDKECALLAGIRESFSPQQLEIRVDANGAFSPANAPQRLKRLSQFHLHSIE-------Q--PI-RQHQWSEMAALCANS 258 (377)
T ss_dssp CHHHHHHHHHHHHHHSCTTTCEEEEECTTBBCTTTHHHHHHHHHTTCCSEEE-------C--CB-CSSCHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCcEEE-------c--cC-CcccHHHHHHHHhhC
Confidence 45666677888877664 66667766678878888888888888888776 2 11 245899999999999
Q ss_pred CccEEEcCCCCCHHH--HHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMED--VQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~d--a~~~l~~~gadgVmi 109 (230)
++||.+.-.+.|..+ +.++++...+|.|.+
T Consensus 259 ~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~i 290 (377)
T 2pge_A 259 PLAIALDEELIGLGAEQRSAMLDAIRPQYIIL 290 (377)
T ss_dssp SSCEEESGGGTTCCTHHHHHHHHHHCCSEEEE
T ss_pred CCcEEECCccCCcchHHHHHHHHhCCCCEEEE
Confidence 999999888888888 778888778998877
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.011 Score=50.72 Aligned_cols=100 Identities=17% Similarity=0.240 Sum_probs=69.4
Q ss_pred HHHHHHhh-cCCceEEEEECCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCC---C--CCcccHHHHHHHHhhCCc
Q 026945 9 SLVEKLAL-NLNVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDG---K--KFRADWNAIKAVKNALRI 81 (230)
Q Consensus 9 eiv~~v~~-~~~~pvsvKiR~g~~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~---~--~~~~~~~~i~~i~~~~~i 81 (230)
++++.+++ ..+.|+.+-+.. .+.++..+.++.+.+ +|+|.|.+|--....+.+ + ....-.+.++++++.+++
T Consensus 87 ~~~~~~~~~~~~~p~~v~l~~-~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~ 165 (311)
T 1ep3_A 87 EKLPWLNENFPELPIIANVAG-SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKV 165 (311)
T ss_dssp THHHHHHHHCTTSCEEEEECC-SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHhcCCCCcEEEEEcC-CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCC
Confidence 34556665 337888887764 456788899999998 999999998543221111 1 111126788888888889
Q ss_pred cEEE--cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLA--NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~--nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||++ +.++.+..++.+.+++.|+|+|.+
T Consensus 166 pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v 195 (311)
T 1ep3_A 166 PLYVKLSPNVTDIVPIAKAVEAAGADGLTM 195 (311)
T ss_dssp CEEEEECSCSSCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHHcCCCEEEE
Confidence 9875 456777777666677799999988
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0071 Score=54.45 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.++.+.++|++.|.+..-. +. +....+.++++++..++||++ |++.|.+++..+.+ .|+|+|.+|
T Consensus 146 ~e~~~~lveaGvdvIvldta~-----G~-~~~~~e~I~~ik~~~~i~Vi~-g~V~t~e~A~~a~~-aGAD~I~vG 212 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAH-----GH-SLNIIRTLKEIKSKMNIDVIV-GNVVTEEATKELIE-NGADGIKVG 212 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSC-----CS-BHHHHHHHHHHHTTCCCEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCC-----CC-cccHHHHHHHHHhcCCCeEEE-eecCCHHHHHHHHH-cCCCEEEEe
Confidence 578999999999999874211 11 122367889999888999987 78899999998876 899999995
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.019 Score=49.34 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=65.8
Q ss_pred HHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEecCCCCCcC--CC--CCcccHHHHHHHHhhCCc
Q 026945 9 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKD--GK--KFRADWNAIKAVKNALRI 81 (230)
Q Consensus 9 eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh~rt~~~~~--~~--~~~~~~~~i~~i~~~~~i 81 (230)
+.+...++.. +.|+.+-+. +.+.++..+.++.++++|+| +|.+|--...... .+ ....-++.++.+++.+++
T Consensus 81 ~~~~~~~~~~~~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~ 159 (311)
T 1jub_A 81 DYVLKNQKENAQEGPIFFSIA-GMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTK 159 (311)
T ss_dssp HHHHHHHHHTCSSSCCEEEEC-CSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHHHhcCCCCCEEEEcC-CCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCC
Confidence 3344443334 688888775 56778899999999999999 9999863222110 01 111125677888888889
Q ss_pred cEE--EcCCCCCHHHH---HHHHHhhCCcEEEEe
Q 026945 82 PVL--ANGNVRHMEDV---QKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi--~nGgI~s~~da---~~~l~~~gadgVmig 110 (230)
||+ .+.++ +.+++ .+.+++.|+|+|.+.
T Consensus 160 Pv~vKi~~~~-~~~~~~~~a~~~~~~G~d~i~v~ 192 (311)
T 1jub_A 160 PLGVKLPPYF-DLVHFDIMAEILNQFPLTYVNSV 192 (311)
T ss_dssp CEEEEECCCC-SHHHHHHHHHHHTTSCCCEEEEC
T ss_pred CEEEEECCCC-CHHHHHHHHHHHHHcCCcEEEec
Confidence 987 45665 55554 445566899998663
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.012 Score=54.01 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+.+.++.+.++|++.|.+++-. +. ....|+.+.++++.+ ++||+ .|++.+.+++..+++ .|+|+|.+|.
T Consensus 233 ~~~~~a~~l~~~G~d~ivi~~a~-----g~-~~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~-~Gad~I~vg~ 303 (491)
T 1zfj_A 233 DTFERAEALFEAGADAIVIDTAH-----GH-SAGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYD-AGVDVVKVGI 303 (491)
T ss_dssp THHHHHHHHHHHTCSEEEECCSC-----TT-CHHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHH-TTCSEEEECS
T ss_pred hHHHHHHHHHHcCCCeEEEeeec-----Cc-chhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHH-cCCCEEEECc
Confidence 35677888999999999999721 11 133578899999998 89999 799999999998886 8999998874
|
| >3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.01 Score=54.04 Aligned_cols=94 Identities=16% Similarity=0.171 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+|+.-.+.++++++++ ++++.+-..-+|+..+++++++.+++. +.+|. | +..+++..+++++.+++
T Consensus 219 ~~~~Di~~v~avRea~~~~~L~vDaN~~w~~~~Ai~~~~~L~~~-l~~iE-------e-----P~~d~~~~~~l~~~~~i 285 (445)
T 3va8_A 219 PPADEVAAIKALHKAFPGVPLRLDPNAAWTVETSKWVAKELEGI-VEYLE-------D-----PAGEIEGMAAVAKEASM 285 (445)
T ss_dssp CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHHHHHTTTT-CSEEE-------S-----CBSHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCHHHHHHHHHHHhhh-cCeEe-------e-----cCcCHHHHHHHHHcCCC
Confidence 4555566777787776 567777777788888888999998887 77765 2 12378899999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.-.+.+..++.++++...+|.|.+
T Consensus 286 PIa~dE~~~~~~~~~~~i~~~a~div~~ 313 (445)
T 3va8_A 286 PLATNMAVVAFDHLPPSILQDAVQVILS 313 (445)
T ss_dssp CEEESSSCCSGGGHHHHHHTTCCSEEEE
T ss_pred CEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 9999889999999999998777898877
|
| >3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.014 Score=53.22 Aligned_cols=95 Identities=18% Similarity=0.182 Sum_probs=76.4
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+++.-.+.++++++++ ++++.+-..-+|+..+++++++.+++. +.+|. | . ..+++..+++++.+++
T Consensus 221 ~~~~Di~~v~avRea~~d~~L~vDaN~~w~~~~Ai~~~~~L~~~-l~~iE-------e--P---~~~~~~~~~l~~~~~i 287 (445)
T 3vdg_A 221 APEEEMAAVEALRAAFPDHPLRLDPNAAWTPQTSVKVAAGLEGV-LEYLE-------D--P---TPGLDGMAEVAAQAPM 287 (445)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHTTTT-CSEEE-------C--C---SSSHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHHhhH-HHeee-------C--C---CCCHHHHHHHHhcCCC
Confidence 4555567778887776 567777777788888899999999887 77775 2 1 2378999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||.+.-.+.+..++.++++...+|.|.+-
T Consensus 288 PIa~dE~~~~~~~~~~~l~~~a~div~~d 316 (445)
T 3vdg_A 288 PLATNMCVVAFDQLPAAVAKNSVQVVLSD 316 (445)
T ss_dssp CEEESSSCCSGGGHHHHHHHTCCSEEEEC
T ss_pred CEEcCCcCCCHHHHHHHHHcCCCCEEeeC
Confidence 99998899999999999987778888763
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.02 Score=50.90 Aligned_cols=90 Identities=18% Similarity=0.299 Sum_probs=66.8
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-------CcC--------------------C---------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------EKD--------------------G--------- 62 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-------~~~--------------------~--------- 62 (230)
+.|+.+-+-...+.+.+.+.+++++++|++.|.||--+.. .++ +
T Consensus 132 ~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~ 211 (368)
T 2nli_A 132 GGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGA 211 (368)
T ss_dssp TCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC-----CTT
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhc
Confidence 4677777655456677889999999999999988753211 000 0
Q ss_pred CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 63 ~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
..+...|+.++.+++.+++||+.-| +.+++++..+.+ .|+|+|.++
T Consensus 212 ~d~~~~~~~i~~lr~~~~~PvivK~-v~~~e~a~~a~~-~Gad~I~vs 257 (368)
T 2nli_A 212 SKQKISPRDIEEIAGHSGLPVFVKG-IQHPEDADMAIK-RGASGIWVS 257 (368)
T ss_dssp BCSBCCHHHHHHHHHHSSSCEEEEE-ECSHHHHHHHHH-TTCSEEEEC
T ss_pred cCchhhHHHHHHHHHHcCCCEEEEc-CCCHHHHHHHHH-cCCCEEEEc
Confidence 0234579999999999999999864 689999998775 899999883
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.012 Score=47.76 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=62.6
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHH
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQK 97 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~ 97 (230)
+.|+..=+|. .+.++..+.++.+.+.|++.|.+...+ +...+.++++++..++|++ +.|.+.+.+++..
T Consensus 6 ~~~i~~~i~~-~d~~~~~~~~~~~~~~G~~~i~l~~~~---------~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~ 75 (212)
T 2v82_A 6 KLPLIAILRG-ITPDEALAHVGAVIDAGFDAVEIPLNS---------PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDA 75 (212)
T ss_dssp SSCEEEECTT-CCHHHHHHHHHHHHHHTCCEEEEETTS---------TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHH
T ss_pred CCCEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEeCCC---------hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHH
Confidence 5667666653 567889999999999999999985432 1235778888877777754 5578899999988
Q ss_pred HHHhhCCcEEEEeh
Q 026945 98 CLEETGCEGVLSAE 111 (230)
Q Consensus 98 ~l~~~gadgVmigR 111 (230)
+++ .|+|+|.+|.
T Consensus 76 a~~-~Gad~V~~~~ 88 (212)
T 2v82_A 76 LAR-MGCQLIVTPN 88 (212)
T ss_dssp HHH-TTCCEEECSS
T ss_pred HHH-cCCCEEEeCC
Confidence 886 8999998664
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.025 Score=52.43 Aligned_cols=89 Identities=25% Similarity=0.321 Sum_probs=65.7
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-------Cc---------------------CC--------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-------EK---------------------DG-------- 62 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-------~~---------------------~~-------- 62 (230)
..|.++.+-.+.|.+.+.+++++++++|++.|.||--... .+ .+
T Consensus 246 ~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~ 325 (511)
T 1kbi_A 246 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF 325 (511)
T ss_dssp SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhc
Confidence 4577777766667677889999999999998877642111 00 00
Q ss_pred CCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 63 KKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 63 ~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
..+...|+.++++++.+++||++- ++.+.+++..+.+ .|+|+|.+
T Consensus 326 ~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~-aGad~I~v 370 (511)
T 1kbi_A 326 IDPSLTWKDIEELKKKTKLPIVIK-GVQRTEDVIKAAE-IGVSGVVL 370 (511)
T ss_dssp BCTTCCHHHHHHHHHHCSSCEEEE-EECSHHHHHHHHH-TTCSEEEE
T ss_pred cChHhHHHHHHHHHHHhCCcEEEE-eCCCHHHHHHHHH-cCCCEEEE
Confidence 112346999999999999999986 4667999988775 89999988
|
| >2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.038 Score=48.14 Aligned_cols=96 Identities=8% Similarity=0.081 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHc---CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~---G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++. ++.+|. | .. .+-|++..+++++.
T Consensus 144 ~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~~~A~~~~~~l~~~~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~ 213 (332)
T 2ozt_A 144 PEEEQAILKALLAALPPGAKLRLDANGSWDRATANRWFAWLDRHGNGKIEYVE-------Q--PL-PPDQWQALLSLAQT 213 (332)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHHHHHCCTTEEEEE-------C--CS-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCEEEEcccCCCCHHHHHHHHHHHHhhccCCcceeE-------C--CC-CCCCHHHHHHHHHh
Confidence 455567788888876 466777777778888899999999988 776665 2 11 23489999999999
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.+..++.++++...+|.+.+
T Consensus 214 ~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~i 244 (332)
T 2ozt_A 214 VTTAIALDESVVSAAEVQRWVDRGWPGFFVI 244 (332)
T ss_dssp CSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 9999999888999999999998655676655
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0031 Score=52.82 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=50.3
Q ss_pred CCCEEE---EecCCCCCcCCCCCcccHHHHHHHHhhC-----CccEEEcCCCCCHHHHHHHHHh--hCCcEEEEehhhhh
Q 026945 46 GCSLLA---VHGRTRDEKDGKKFRADWNAIKAVKNAL-----RIPVLANGNVRHMEDVQKCLEE--TGCEGVLSAESLLE 115 (230)
Q Consensus 46 G~~~i~---vh~rt~~~~~~~~~~~~~~~i~~i~~~~-----~ipvi~nGgI~s~~da~~~l~~--~gadgVmigR~~l~ 115 (230)
++|+|. |++.+..|. + .+...+.++++++.. ++||.+-|||+ .+.+..+. . .|+|++.+|++++.
T Consensus 148 ~~D~vlvMsv~pgfggq~--f-~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~-~~~aGad~~VvGSaIf~ 222 (237)
T 3cu2_A 148 QIDVIQLLTLDPRNGTKY--P-SELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFK-QGTHQIDWLVSGSALFS 222 (237)
T ss_dssp TCSEEEEESEETTTTEEC--C-HHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHH-HSSSCCCCEEECGGGGS
T ss_pred cCceeeeeeeccCcCCee--c-ChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHH-HhCCCCcEEEEeeHHhC
Confidence 689884 477776553 2 244567777777765 58999999995 78888776 5 79999999999887
Q ss_pred C
Q 026945 116 N 116 (230)
Q Consensus 116 n 116 (230)
.
T Consensus 223 ~ 223 (237)
T 3cu2_A 223 G 223 (237)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.017 Score=51.66 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHH--HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l--~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
++.-.+.++++++.+ ++++.+-..-+|+.+++.++++.+ ++.++.+|. | .. .+-|++..+++++.++
T Consensus 172 ~~~d~~~v~avR~~~~~~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 241 (389)
T 3s5s_A 172 AASDPARIEAIHAAAPGASLILDGNGGLTAGEALALVAHARRLGADVALLE-------Q--PV-PRDDWDGMKEVTRRAG 241 (389)
T ss_dssp TTTHHHHHHHHHHHCTTCEEEEECTTCSCHHHHHHHHHHHHHTTCEEEEEE-------C--CS-CTTCHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhhCCCCeEEEE-------C--CC-CcccHHHHHHHHhhCC
Confidence 334456677777765 455666666678888899999999 555566654 2 11 2347999999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|.+
T Consensus 242 iPIa~dEs~~~~~~~~~~i~~~a~d~v~~ 270 (389)
T 3s5s_A 242 VDVAADESAASAEDVLRVAAERAATVVNI 270 (389)
T ss_dssp SCEEESTTCSSHHHHHHHHHTTCCSEEEE
T ss_pred CCEEECCCCCCHHHHHHHHHcCCCCEEEe
Confidence 99999889999999999998777898877
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.034 Score=47.53 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=63.5
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCC-CEEEEe-cCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC----CCCC
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVH-GRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG----NVRH 91 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i~vh-~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG----gI~s 91 (230)
++.||.+|.-...+..+....++.+...|. +.+.+| |-+....+ .....|+..+..+++..++||++.- |.+.
T Consensus 144 ~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y-~~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~ 222 (276)
T 1vs1_A 144 SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPS-TRFTLDVAAVAVLKEATHLPVIVDPSHPAGRRS 222 (276)
T ss_dssp HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCS-SSSBCBHHHHHHHHHHBSSCEEECCHHHHCSGG
T ss_pred cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCc-CcchhCHHHHHHHHHHhCCCEEEeCCCCCCccc
Confidence 589999999887677888888888899997 555667 43111111 1235789999999998899987521 3322
Q ss_pred --HHHHHHHHHhhCCcEEEEeh
Q 026945 92 --MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 92 --~~da~~~l~~~gadgVmigR 111 (230)
.+-....+. .|++|+||=+
T Consensus 223 ~~~~~~~aAva-~Ga~Gl~IE~ 243 (276)
T 1vs1_A 223 LVPALAKAGLA-AGADGLIVEV 243 (276)
T ss_dssp GHHHHHHHHHH-TTCSEEEEEB
T ss_pred hHHHHHHHHHH-cCCCEEEEEe
Confidence 333444554 7999999965
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.017 Score=51.00 Aligned_cols=97 Identities=16% Similarity=0.340 Sum_probs=66.5
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEE--ecC-CCCCcCCCCCcccHHHHHHHHhhCCccEEEc-
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV--HGR-TRDEKDGKKFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~v--h~r-t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
++++. .++.||.+|.-..-+.++....++.+...|...+++ ||- +... + .....|+..+..+++..++||++.
T Consensus 206 L~~va-~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~-~-~~~~vdl~ai~~lk~~~~lpVi~ds 282 (350)
T 1vr6_A 206 LSKAG-SYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEK-A-TRNTLDISAVPIIRKESHLPILVDP 282 (350)
T ss_dssp HHHHH-TTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCC-S-SSSBCCTTHHHHHHHHBSSCEEECH
T ss_pred HHHHH-ccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCC-c-ChhhhhHHHHHHHHHhhCCCEEEeC
Confidence 44444 468999999988767788888888899999865555 332 2221 1 134578999999999889999762
Q ss_pred C---CCCC--HHHHHHHHHhhCCcEEEEeh
Q 026945 87 G---NVRH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 G---gI~s--~~da~~~l~~~gadgVmigR 111 (230)
. |-+. ..-....+. .||||+||=+
T Consensus 283 sHs~G~~~~v~~~a~AAvA-~GA~Gl~IE~ 311 (350)
T 1vr6_A 283 SHSGGRRDLVIPLSRAAIA-VGAHGIIVEV 311 (350)
T ss_dssp HHHHCSGGGHHHHHHHHHH-HTCSEEEEEB
T ss_pred CCCCcccchHHHHHHHHHH-hCCCEEEEEe
Confidence 1 3222 333444554 7999999965
|
| >3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.02 Score=51.19 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHH--HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKML--EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l--~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
++.-.+.++++++++ ++++.+-..-+|+..++.++++.+ ++.++.+|. | .. .+-|++..+++++.++
T Consensus 201 ~~~di~~v~avR~a~~d~~L~vDaN~~w~~~~A~~~~~~L~~~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 270 (393)
T 3u9i_A 201 MEHDLARIVAIRDVAPTARLILDGNCGYTAPDALRLLDMLGVHGIVPALFE-------Q--PV-AKDDEEGLRRLTATRR 270 (393)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEECCSCCCHHHHHHHHHTTTTTTCCCSEEE-------C--CS-CTTCTTHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEccCCCCHHHHHHHHHHHhhCCCCeEEEE-------C--CC-CCCcHHHHHHHHhhCC
Confidence 455567777887776 455666666678888888899988 777777776 2 11 2347889999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|.+
T Consensus 271 iPIa~dE~~~~~~~~~~~i~~~a~d~i~~ 299 (393)
T 3u9i_A 271 VPVAADESVASATDAARLARNAAVDVLNI 299 (393)
T ss_dssp SCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred CcEEeCCcCCCHHHHHHHHHcCCCCEEEe
Confidence 99999889999999999998777888876
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0059 Score=56.32 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+.++.+.++|++.|.++..... ....++.++++++.. ++||++ |++.|.+++..+.+ .|||+|.+|
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~-aGaD~I~vg 298 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGH------SKGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAE-AGADAVKVG 298 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCS------BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred cchHHHHHHHhhcccceEEecccCCc------chhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHH-cCCCEEEEC
Confidence 45678899999999999999865321 133568899999988 788888 88999999998876 899999985
|
| >3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.021 Score=51.92 Aligned_cols=94 Identities=13% Similarity=0.163 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+|+.-.+.++++++++ ++++.+-..-+|+..+++++++.+++. +.+|. | . ..+++..+++++.+++
T Consensus 216 ~~~~Di~rv~avRea~pd~~L~vDaN~~w~~~~Ai~~~~~L~~~-l~~iE-------e--P---~~~~~~~~~l~~~~~i 282 (441)
T 3vc5_A 216 PPEQEAEAIQALRDAFPGLPLRLDPNAAWTVETSIRVGRALDGV-LEYLE-------D--P---TPGIDGMARVAAEVPM 282 (441)
T ss_dssp CHHHHHHHHHHHHHHSTTCCEEEECTTCSCHHHHHHHHHHTTTT-CSEEE-------C--C---SSSHHHHHHHHTTSSS
T ss_pred CHHHHHHHHHHHHHhCCCCcEeccCCCCCCHHHHHHHHHHHHHH-HHHhh-------c--c---CCCHHHHHHHHhcCCC
Confidence 4455566777787776 566777777788888889999999887 77765 2 1 2378999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.++=.+.+..++.++++...+|.|.+
T Consensus 283 PIa~dE~~~~~~~~~~~l~~~a~dii~~ 310 (441)
T 3vc5_A 283 PLATNMCVVTPEHLPAAVERRPIGVLLI 310 (441)
T ss_dssp CEEESSSCCSGGGHHHHHHHCCCSEEEE
T ss_pred CEEeCCCCCCHHHHHHHHHhCCCCEEee
Confidence 9999888999999999998777888876
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0081 Score=53.41 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=57.9
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc---cH-HHHHHHHhhCCccEEEcCCC---CC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---DW-NAIKAVKNALRIPVLANGNV---RH 91 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~---~~-~~i~~i~~~~~ipvi~nGgI---~s 91 (230)
+.|+..-+...... .+..+.++..|++++.+|-........-.+.. +| +.|+++++.+++||++=| | .+
T Consensus 144 ~~~~ianig~~~~~---e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s 219 (365)
T 3sr7_A 144 HLLLATNIGLDKPY---QAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKE-VGFGMD 219 (365)
T ss_dssp -CCEEEEEETTSCH---HHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCC
T ss_pred CCcEEEEeCCCCCH---HHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCC
Confidence 45554444433222 25677778899999999975421110001122 34 789999999999999864 5 79
Q ss_pred HHHHHHHHHhhCCcEEEEe
Q 026945 92 MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 92 ~~da~~~l~~~gadgVmig 110 (230)
++++..+.+ .|+|+|.++
T Consensus 220 ~e~A~~l~~-aGad~I~V~ 237 (365)
T 3sr7_A 220 VKTIQTAID-LGVKTVDIS 237 (365)
T ss_dssp HHHHHHHHH-HTCCEEECC
T ss_pred HHHHHHHHH-cCCCEEEEe
Confidence 999988776 899999873
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.03 Score=48.73 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
.+|+.+.+.++.+++.++.|+.|.+-+. + .+..+.++.+.+.|++.|.+|... + .+.++.+++ .++
T Consensus 60 ~~~~~l~~~i~~i~~~~~~p~gVnl~~~-~-~~~~~~~~~~~~~g~d~V~l~~g~---------p--~~~~~~l~~-~g~ 125 (326)
T 3bo9_A 60 MKPDDLRKAISELRQKTDKPFGVNIILV-S-PWADDLVKVCIEEKVPVVTFGAGN---------P--TKYIRELKE-NGT 125 (326)
T ss_dssp CCHHHHHHHHHHHHTTCSSCEEEEEETT-S-TTHHHHHHHHHHTTCSEEEEESSC---------C--HHHHHHHHH-TTC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEecc-C-CCHHHHHHHHHHCCCCEEEECCCC---------c--HHHHHHHHH-cCC
Confidence 3688889999999988888998887542 1 234577888889999999998742 1 356677766 478
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||+. .+.+.+++..+.+ .|+|+|.+
T Consensus 126 ~v~~--~v~s~~~a~~a~~-~GaD~i~v 150 (326)
T 3bo9_A 126 KVIP--VVASDSLARMVER-AGADAVIA 150 (326)
T ss_dssp EEEE--EESSHHHHHHHHH-TTCSCEEE
T ss_pred cEEE--EcCCHHHHHHHHH-cCCCEEEE
Confidence 8875 6789999988775 89999988
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.046 Score=54.64 Aligned_cols=99 Identities=21% Similarity=0.283 Sum_probs=73.0
Q ss_pred HHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--CCC------CCcccHHHHHHHHhhCCc
Q 026945 11 VEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--DGK------KFRADWNAIKAVKNALRI 81 (230)
Q Consensus 11 v~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--~~~------~~~~~~~~i~~i~~~~~i 81 (230)
++.+++.. +.|+.+-+-.+.+.++..+.++.++++|+|+|.+|.-..... .++ .+..-++.++.+++.+++
T Consensus 625 i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~ 704 (1025)
T 1gte_A 625 VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI 704 (1025)
T ss_dssp HHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCC
Confidence 45555544 678888887777888899999999999999999986533221 111 112236788888888899
Q ss_pred cEE--EcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVL--ANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi--~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||+ ...++.+..++.+.+.+.|+|+|.+
T Consensus 705 Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v 734 (1025)
T 1gte_A 705 PFFAKLTPNVTDIVSIARAAKEGGADGVTA 734 (1025)
T ss_dssp CEEEEECSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred ceEEEeCCChHHHHHHHHHHHHcCCCEEEE
Confidence 988 5677877777777777799999988
|
| >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.027 Score=50.68 Aligned_cols=95 Identities=9% Similarity=0.068 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.-.+.++++++++ ++++.+-..-+|+..+++++++.+++.++.+|. | .. .+-|++..+++++.+++|
T Consensus 194 ~~di~~v~avRea~G~~~~L~vDaN~~w~~~~A~~~~~~Le~~~l~~iE-------e--P~-~~~d~~~~a~l~~~~~~p 263 (404)
T 3ekg_A 194 KKNLEELATMRERVGPDFWLMFDCWMSLDLNYATRLARGAREYGLKWIE-------E--AL-PPDDYWGYAELRRNAPTG 263 (404)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEE-------C--CS-CTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCCCCeEEecCCCCCCHHHHHHHHHHHhhcCCcEEe-------c--CC-CcccHHHHHHHHHhcCCC
Confidence 45667888998887 578888888899999999999999999999886 2 11 234789999999998887
Q ss_pred E-EEcC-CCCCHHHHHHHHHhhCCcEEEE
Q 026945 83 V-LANG-NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 83 v-i~nG-gI~s~~da~~~l~~~gadgVmi 109 (230)
| |+.| .+.|..++.++++...+|.|.+
T Consensus 264 i~Ia~gE~~~~~~~~~~li~~~a~dii~~ 292 (404)
T 3ekg_A 264 MMVTTGEHEATRWGFRMLLEMGCCDIIQP 292 (404)
T ss_dssp CEEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred eEEEecCccCCHHHHHHHHHcCCCCeEec
Confidence 4 4444 5889999999998666887765
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0062 Score=56.27 Aligned_cols=70 Identities=20% Similarity=0.323 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+.++.+.++|++.|.++..... ....++.++++++.. ++||++ |++.+.+.+..+.+ .|||+|.+|
T Consensus 230 ~d~~~~a~~l~~aG~d~I~id~a~g~------~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~-aGaD~I~Vg 300 (496)
T 4fxs_A 230 PGNEERVKALVEAGVDVLLIDSSHGH------SEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIE-AGVSAVKVG 300 (496)
T ss_dssp SCCHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred cchHHHHHHHHhccCceEEecccccc------chHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHH-hCCCEEEEC
Confidence 34577889999999999999875321 123468899999988 789988 88999999998876 899999986
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.023 Score=46.65 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=66.8
Q ss_pred HHHHHHHhhcCCceEEEEECCCC---ChH--HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFP---NLQ--DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~---~~~--~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.++++.+ .-+++++|..-.+. ..+ ...++++.++++|++.+++. ..+.++.+++.+++|
T Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~--------------~~~~i~~i~~~~~~p 71 (234)
T 1yxy_A 8 EKLMEQL--KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRAN--------------SVRDIKEIQAITDLP 71 (234)
T ss_dssp HHHHHHH--TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHTTCCSC
T ss_pred HHHHHHH--hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecC--------------CHHHHHHHHHhCCCC
Confidence 4677777 33567776654421 235 67899999999999999863 136689999999999
Q ss_pred EEEc--C-----CC---CCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 83 VLAN--G-----NV---RHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 83 vi~n--G-----gI---~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
++.. + .+ .+.+.+..+++ .|+|.|.++-....+|
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~~~i~~~~~-~Gad~V~l~~~~~~~~ 115 (234)
T 1yxy_A 72 IIGIIKKDYPPQEPFITATMTEVDQLAA-LNIAVIAMDCTKRDRH 115 (234)
T ss_dssp EEEECBCCCTTSCCCBSCSHHHHHHHHT-TTCSEEEEECCSSCCT
T ss_pred EEeeEcCCCCccccccCChHHHHHHHHH-cCCCEEEEcccccCCC
Confidence 9631 2 22 24567777665 8999999998887777
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0088 Score=55.28 Aligned_cols=70 Identities=17% Similarity=0.350 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+..+.++.+.++|++.|.+|.-. ++. ...++.++++++.+ ++||++ |++.+.+++..+.+ .|+|+|.+|-
T Consensus 255 ~~~~~a~~~~~aG~d~v~i~~~~-----G~~-~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~-aGad~I~vg~ 325 (514)
T 1jcn_A 255 DDKYRLDLLTQAGVDVIVLDSSQ-----GNS-VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLID-AGVDGLRVGM 325 (514)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC-----CCS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred hhHHHHHHHHHcCCCEEEeeccC-----Ccc-hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHH-cCCCEEEECC
Confidence 45778888999999999998742 221 23578999999998 799987 78999999998776 8999998854
|
| >1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.048 Score=46.97 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=66.2
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhhC-CccEEEc-
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNAL-RIPVLAN- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~~-~ipvi~n- 86 (230)
+++++. .++.||.+|.-..-+.++....+..+...|...+++.-|+.. +.|. ...|...+..+++.. ++||+..
T Consensus 124 Ll~~~a-~~~kPV~lk~G~~~t~~ei~~Av~~i~~~Gn~~i~L~~rg~~--~~y~~~~~dl~~i~~lk~~~~~~pV~~D~ 200 (292)
T 1o60_A 124 LVEAMA-KTGAVINVKKPQFLSPSQMGNIVEKIEECGNDKIILCDRGTN--FGYDNLIVDMLGFSVMKKASKGSPVIFDV 200 (292)
T ss_dssp HHHHHH-HTTCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHHHHHHHTTSCCEEEEH
T ss_pred HHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHHHHhhCCCCCEEEEC
Confidence 455555 468999999987656678888888999999866666555432 2231 126888999999987 8999982
Q ss_pred --------------CCCCC--HHHHHHHHHhhCCcEEEEeh
Q 026945 87 --------------GNVRH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 --------------GgI~s--~~da~~~l~~~gadgVmigR 111 (230)
+|.+. ..-+..... .|++|+||=+
T Consensus 201 sH~~q~p~~~~~~~~g~~~~~~~ia~aAva-~Ga~Gl~IE~ 240 (292)
T 1o60_A 201 THSLQCRDPFGAASSGRRAQVTELARSGLA-VGIAGLFLEA 240 (292)
T ss_dssp HHHCC------------CTTHHHHHHHHHH-HCCSEEEEEE
T ss_pred CCcccccCccccCCCCChhHHHHHHHHHHH-cCCCEEEEEe
Confidence 22211 123334443 7999999965
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=96.27 E-value=0.08 Score=44.67 Aligned_cols=106 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhcCCceEEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc-----------------
Q 026945 6 LVKSLVEKLALNLNVPVSCKI-RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA----------------- 67 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKi-R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~----------------- 67 (230)
.+.+.++.+++.-...+..=+ -..++.+.+.++++.++++|+|+|.+-.-..+. ...|+.
T Consensus 3 ~~~~~f~~~~~~~~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp--~~DG~~i~~a~~~al~~G~~~~~ 80 (268)
T 1qop_A 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDP--LADGPTIQNANLRAFAAGVTPAQ 80 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCC--TTCCHHHHHHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCc--cCCCHHHHHHHHHHHHcCCCHHH
Confidence 355566666543222222222 333567889999999999999999995422111 011111
Q ss_pred cHHHHHHHHhh-CCccEEEcCCCC-----CHHHHHHHHHhhCCcEEEEehhh
Q 026945 68 DWNAIKAVKNA-LRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 68 ~~~~i~~i~~~-~~ipvi~nGgI~-----s~~da~~~l~~~gadgVmigR~~ 113 (230)
-.+.++++++. +++||++-+..+ ..+...+.+.++|+||+.+.-..
T Consensus 81 ~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~ 132 (268)
T 1qop_A 81 CFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVP 132 (268)
T ss_dssp HHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCC
T ss_pred HHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCC
Confidence 13668889988 899998744221 22444455556999999985433
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.031 Score=45.44 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=64.7
Q ss_pred CceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE-------cCC
Q 026945 19 NVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-------NGN 88 (230)
Q Consensus 19 ~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~-------nGg 88 (230)
++-|||-...+. +...+.++++.++++|++++.+. ..+.++.+++.+++|+++ +++
T Consensus 6 ~~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~--------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~ 71 (223)
T 1y0e_A 6 GLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRAN--------------TKEDILAIKETVDLPVIGIVKRDYDHSD 71 (223)
T ss_dssp EEEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEE--------------SHHHHHHHHHHCCSCEEEECBCCCTTCC
T ss_pred CeEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccC--------------CHHHHHHHHHhcCCCEEeeeccCCCccc
Confidence 355777776653 44678899999999999999762 237799999999999963 344
Q ss_pred C---CCHHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 89 V---RHMEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 89 I---~s~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
+ .+.+++..+++ .|+|.|.++-.+..+|
T Consensus 72 ~~i~~~~~~i~~~~~-~Gad~v~l~~~~~~~p 102 (223)
T 1y0e_A 72 VFITATSKEVDELIE-SQCEVIALDATLQQRP 102 (223)
T ss_dssp CCBSCSHHHHHHHHH-HTCSEEEEECSCSCCS
T ss_pred cccCCcHHHHHHHHh-CCCCEEEEeeecccCc
Confidence 5 56778877775 8999999998887777
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.063 Score=47.80 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=62.3
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEec---------------CC-C-------------CCc--C------
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHG---------------RT-R-------------DEK--D------ 61 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~---------------rt-~-------------~~~--~------ 61 (230)
+-|.+..+-+.. .+...++++.++++|+..+.|.- -+ . .+. .
T Consensus 123 ~~~~~fQly~~~-~~~~~~~i~~a~~aG~~al~vTvd~p~~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala 201 (380)
T 1p4c_A 123 DGDLWFQLYVIH-REIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQA 201 (380)
T ss_dssp CSCEEEEECCSS-HHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHH
T ss_pred CCCeEEEEEech-HHHHHHHHHHHHHcCCCEEEEeecCccccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHH
Confidence 345555554333 45677888999999998877621 10 0 000 0
Q ss_pred -----CCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 62 -----GKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 62 -----~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.+..+|+.++++++.+++||+.- ++.+++++..+.+ .|+|+|.++
T Consensus 202 ~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vk-gv~t~e~a~~a~~-aGad~I~vs 253 (380)
T 1p4c_A 202 ALMSRQMDASFNWEALRWLRDLWPHKLLVK-GLLSAEDADRCIA-EGADGVILS 253 (380)
T ss_dssp HHTSSCCCTTCCHHHHHHHHHHCCSEEEEE-EECCHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHhhcCccccHHHHHHHHHhcCCCEEEE-ecCcHHHHHHHHH-cCCCEEEEc
Confidence 0123457999999999999999985 4899999998886 899999994
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.05 Score=48.00 Aligned_cols=97 Identities=11% Similarity=0.093 Sum_probs=71.0
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCCh---------------------------------HHHHHHHHHHHHcCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNL---------------------------------QDTIKYAKMLEDAGC 47 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~---------------------------------~~~~~~a~~l~~~G~ 47 (230)
+.+|+.+.+.++.+++.++.|+.|.+-..... ....+.++.+.+.|+
T Consensus 44 ~~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 123 (369)
T 3bw2_A 44 YKTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPV 123 (369)
T ss_dssp TSCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCC
Confidence 35788888999999887777888776332110 013456778888999
Q ss_pred CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE-eh
Q 026945 48 SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS-AE 111 (230)
Q Consensus 48 ~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi-gR 111 (230)
+.|.+|... ..++.++++++ .++||+. .+.|.+++..+.+ .|+|+|.+ |+
T Consensus 124 ~~V~~~~g~----------~~~~~i~~~~~-~g~~v~~--~v~t~~~a~~a~~-~GaD~i~v~g~ 174 (369)
T 3bw2_A 124 PVVSFHFGV----------PDREVIARLRR-AGTLTLV--TATTPEEARAVEA-AGADAVIAQGV 174 (369)
T ss_dssp SEEEEESSC----------CCHHHHHHHHH-TTCEEEE--EESSHHHHHHHHH-TTCSEEEEECT
T ss_pred CEEEEeCCC----------CcHHHHHHHHH-CCCeEEE--ECCCHHHHHHHHH-cCCCEEEEeCC
Confidence 999998732 23678888877 4778776 5789999887765 89999998 65
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.063 Score=45.23 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=62.4
Q ss_pred HHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc----------------
Q 026945 7 VKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA---------------- 67 (230)
Q Consensus 7 ~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~---------------- 67 (230)
+.+.++.+++.- -+|.. +-..++.+.+.++++.++++|+|.|.+..-.... ...|+.
T Consensus 4 ~~~~f~~~~~~~~~~~i~~i--~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP--~adgp~i~~a~~~al~~G~~~~ 79 (262)
T 2ekc_A 4 ISDKFTELKEKREKALVSYL--MVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDP--VADGPTIQVAHEVALKNGIRFE 79 (262)
T ss_dssp HHHHHHHHHHHTBCEEEEEE--ETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCC--TTSCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhcCCceEEEEe--cCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCc--ccccHHHHHHHHHHHHcCCCHH
Confidence 455666665432 23333 2333577889999999999999999995422110 011111
Q ss_pred -cHHHHHHHHhhC-CccEEEcCCCCC-----HHHHHHHHHhhCCcEEEEe
Q 026945 68 -DWNAIKAVKNAL-RIPVLANGNVRH-----MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 68 -~~~~i~~i~~~~-~ipvi~nGgI~s-----~~da~~~l~~~gadgVmig 110 (230)
-.+.++++++.+ ++|+++-|..+. .+...+...++|+||+.+.
T Consensus 80 ~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~ 129 (262)
T 2ekc_A 80 DVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVP 129 (262)
T ss_dssp HHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECT
T ss_pred HHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEEC
Confidence 235688888888 899998654431 1344444556999999984
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.054 Score=46.50 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhC-CccEEEcC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNAL-RIPVLANG 87 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~-~ipvi~nG 87 (230)
+++++. .++.||.+|.-..-+.++....++.+.+.|.+.|.+--|+.. +++.. ..|+..+..+++.. ++||++..
T Consensus 126 LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~--y~~~~~~vdl~~i~~lk~~~~~~pV~~D~ 202 (285)
T 3sz8_A 126 LVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSS--FGYDNLVVDMLGFRQMAETTGGCPVIFDV 202 (285)
T ss_dssp HHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEE--CSSSCEECCTTHHHHHHHHTTSCCEEEET
T ss_pred HHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCC--CCCCcCccCHHHHHHHHHhCCCCCEEEeC
Confidence 455554 368999999987656677788888889999876666444332 23322 26889999999998 59999843
Q ss_pred CC---------------CC--HHHHHHHHHhhCCcEEEEeh
Q 026945 88 NV---------------RH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 88 gI---------------~s--~~da~~~l~~~gadgVmigR 111 (230)
+= +. +.-+..+.. .||||+||=.
T Consensus 203 sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA-~GA~gl~IE~ 242 (285)
T 3sz8_A 203 THSLQCRDPLGDASGGRRRQVLDLARAGIA-VGIAGLFLEA 242 (285)
T ss_dssp TTTCC---------------HHHHHHHHHH-HCCSEEEEEE
T ss_pred CCccccCCCcCCCCCCchhhHHHHHHHHHH-hCCCEEEEEe
Confidence 21 11 223445554 7999999843
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0035 Score=54.15 Aligned_cols=90 Identities=11% Similarity=0.202 Sum_probs=47.8
Q ss_pred HHHHHHhhcCC--ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-------
Q 026945 9 SLVEKLALNLN--VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL------- 79 (230)
Q Consensus 9 eiv~~v~~~~~--~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~------- 79 (230)
+-++++++..+ +++.+-+. +.++ ++...++|+|+|-++..+. +.++++++.+
T Consensus 187 ~ai~~~r~~~~~~~~i~vev~---tlee----~~~A~~aGaD~I~ld~~~~------------~~l~~~v~~l~~~~~g~ 247 (294)
T 3c2e_A 187 NAVKNARAVCGFAVKIEVECL---SEDE----ATEAIEAGADVIMLDNFKG------------DGLKMCAQSLKNKWNGK 247 (294)
T ss_dssp HHHHHHHHHHCTTSCEEEECS---SSHH----HHHHHHHTCSEEECCC--------------------------------
T ss_pred HHHHHHHHhcCcCCeEEEecC---CHHH----HHHHHHcCCCEEEECCCCH------------HHHHHHHHHhcccccCC
Confidence 34555555442 34555333 2233 3334468999999866321 2233322222
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
++||.++||| +++.+.++.+ +|+|++.+|+.....|++
T Consensus 248 ~~v~I~ASGGI-t~~ni~~~~~-~GvD~i~vGs~i~~a~~~ 286 (294)
T 3c2e_A 248 KHFLLECSGGL-NLDNLEEYLC-DDIDIYSTSSIHQGTPVI 286 (294)
T ss_dssp -CCEEEEECCC-CC------CC-CSCSEEECGGGTSSCCCC
T ss_pred CCeEEEEECCC-CHHHHHHHHH-cCCCEEEEechhcCCCCC
Confidence 2899999999 8999998775 899999999886655654
|
| >1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.036 Score=49.25 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=69.2
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+.++++++++ ++.+.+-..-+|+.+++ ++++.+++.++.+|. | .. .+-||+..+++++.+++||.+.=
T Consensus 191 ~~v~avr~a~~~~~l~vDaN~~~~~~~a-~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~~ipIa~dE 259 (386)
T 1wue_A 191 EPVALIRQHFPNLPLMVDANSAYTLADL-PQLQRLDHYQLAMIE-------Q--PF-AADDFLDHAQLQRELKTRICLDE 259 (386)
T ss_dssp HHHHHHHHHCTTSCEEEECTTCCCGGGH-HHHHGGGGSCCSCEE-------C--CS-CTTCSHHHHHHHTTCSSCEEECT
T ss_pred HHHHHHHHhCCCCeEEEeCCCCCCHHHH-HHHHHHHhCCCeEEe-------C--CC-CcccHHHHHHHHHhcCCCEEeCC
Confidence 4456666554 45666666667877777 888888888887776 2 11 23478999999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
.+.+..++.++++...+|.|.+
T Consensus 260 ~~~~~~~~~~~i~~~a~d~i~i 281 (386)
T 1wue_A 260 NIRSLKDCQVALALGSCRSINL 281 (386)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEE
T ss_pred ccCCHHHHHHHHHcCCCCEEEE
Confidence 8999999999998777998877
|
| >3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.074 Score=46.92 Aligned_cols=95 Identities=9% Similarity=0.066 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.-.+.++++++++ ++.+.+...-+|+.++++++++.+++. ++.+|. | .. .+-||+..+++++.+
T Consensus 170 ~~~~d~~~v~avr~a~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~~~i~~iE-------q--P~-~~~d~~~~~~l~~~~ 239 (372)
T 3cyj_A 170 EPEKDPERVRAAREAIGESVELMVDANGAYTRKQALYWAGAFAREAGISYLE-------E--PV-SSEDREGLRLLRDRG 239 (372)
T ss_dssp SGGGHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHHCCCEEE-------C--SS-CTTCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhhcCCcEEE-------C--CC-CcccHHHHHHHHHhC
Confidence 3455567788888765 577888888789989999999999999 988887 2 11 234899999999988
Q ss_pred C--ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 R--IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~--ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+ +||.+.=.+.+..++.++ ...+|.|.+
T Consensus 240 ~~~ipIa~dE~~~~~~~~~~~--~~a~d~i~i 269 (372)
T 3cyj_A 240 PGGVAIAAGEYEWTLPQLHDL--AGCVDILQA 269 (372)
T ss_dssp CTTCEEEECTTCCSHHHHHHH--HTTCSEEEE
T ss_pred CCCCCEECCCCccCHHHHHHH--hCCCCEEec
Confidence 8 799998889999999887 467898877
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.036 Score=47.42 Aligned_cols=98 Identities=17% Similarity=0.199 Sum_probs=65.4
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhhC-CccEEEc-
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNAL-RIPVLAN- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~~-~ipvi~n- 86 (230)
+++++. .++.||.+|.-..-+.++....+..+...|...+++.-|+.. +.+. ...|...+..+++.. +.||+..
T Consensus 121 ll~~~a-~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~~--~~~~~~~~dl~~i~~lk~~~~~~pV~~D~ 197 (280)
T 2qkf_A 121 LVVAMA-KTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGSS--FGYDNLVVDMLGFGVMKQTCGNLPVIFDV 197 (280)
T ss_dssp HHHHHH-HTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCEE--CSTTCEECCTTHHHHHHHHTTTCCEEEEH
T ss_pred HHHHHH-cCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHHHHHhCCCCCEEEEC
Confidence 455553 468999999987656678888888899999866666555433 2221 125888899999987 8999983
Q ss_pred ----------CCCCC------HHHHHHHHHhhCCcEEEEeh
Q 026945 87 ----------GNVRH------MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 ----------GgI~s------~~da~~~l~~~gadgVmigR 111 (230)
|+-.. ..-+.... ..|+||+||=+
T Consensus 198 sH~~q~~~~~~~~s~g~~~~~~~~a~aav-a~Ga~G~~IE~ 237 (280)
T 2qkf_A 198 THSLQTRDAGSAASGGRRAQALDLALAGM-ATRLAGLFLES 237 (280)
T ss_dssp HHHCC----------CHHHHHHHHHHHHH-TTCCSEEEEEC
T ss_pred CCCccccCccccccCCchhhHHHHHHHHH-HcCCCEEEEee
Confidence 11111 12233444 47999999955
|
| >1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.054 Score=48.71 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=74.3
Q ss_pred HHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCC---EEEEecCCCCCcCCCC---CcccHHHH
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKDGKK---FRADWNAI 72 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~---~i~vh~rt~~~~~~~~---~~~~~~~i 72 (230)
..+.++++++.+ ++.+.+-..- +|+.++++++++.+++.|+. +|. | ... ++.||+..
T Consensus 218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~~~~A~~~~~~L~~~~~~~~l~iE-------q--P~~~~~~~~d~~~~ 288 (413)
T 1kko_A 218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIE-------G--PVDAGNKPDQIRML 288 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEEE-------C--CCCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCeEEEECCCccccccCCCHHHHHHHHHHHHhccCCcceEEE-------C--CcCCCCCcccHHHH
Confidence 348889998876 4667777666 78889999999999997755 443 2 111 13489999
Q ss_pred HHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 73 KAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 73 ~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++++. .++||.+.=.+.+++++.++++...+|.|.+
T Consensus 289 ~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~i 330 (413)
T 1kko_A 289 TAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQI 330 (413)
T ss_dssp HHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEe
Confidence 999988 8899999888999999999998777898877
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.043 Score=50.77 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+..+.++.+.++|++.|.+..-... ...-++.++++++..+ +||++ |+|.+.+++..+.+ .|+|+|.+|-
T Consensus 256 d~~era~aLveaGvd~I~Id~a~g~------~~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~-aGad~i~vg~ 326 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTAHGH------SQGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIE-AGANVVKVGI 326 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCTT------SHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred chHHHHHHHHhhccceEEecccccc------hhhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHH-hCCCEEEECC
Confidence 4577788999999999999754211 1234678999998875 78886 78999999998886 8999998854
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.022 Score=48.66 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=64.9
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC-CCCc--CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHH
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-RDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 94 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt-~~~~--~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~d 94 (230)
...|+.+-++. .++++.+.++|++.|++-... .... .+.....+.+.++++++.+++|+++++++.+.++
T Consensus 20 ~~~~~i~~~~~-------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~ 92 (297)
T 2zbt_A 20 FKGGVIMDVTT-------PEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVE 92 (297)
T ss_dssp GTTEEEEEESS-------HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHH
T ss_pred hhCCeeeeech-------HHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHH
Confidence 34566555542 689999999999999872110 0000 1111123578899999999999999988888888
Q ss_pred HHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 95 VQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 95 a~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+..+++ .|+|+| .+......|.+.+.+.
T Consensus 93 ~~~~~~-aGad~v-~~~~~~~~~~~~~~~~ 120 (297)
T 2zbt_A 93 AMILEA-IGVDFI-DESEVLTPADEEHHID 120 (297)
T ss_dssp HHHHHH-TTCSEE-EEETTSCCSCSSCCCC
T ss_pred HHHHHH-CCCCEE-eeeCCCChHHHHHHHH
Confidence 887775 899999 4433333355555544
|
| >2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.011 Score=51.51 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. | . -.+++..+++++.+++|
T Consensus 108 ~~d~~~v~avR~~~G~~~~L~vDaN~~w~~~~A~~~~~~L~~~~l~~iE-------q--P---~~~~~~~~~l~~~~~iP 175 (327)
T 2opj_A 108 ANDVARVEAVRDALGPRGRVRIDVNGAWDVDTAVRMIRLLDRFELEYVE-------Q--P---CATVDELAEVRRRVSVP 175 (327)
T ss_dssp -CHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------C--C---SSSHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCcEEe-------C--C---CCCHHHHHHHHhhCCCC
Confidence 33456788888765 577777777789988999999999998887776 2 1 12578889999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|.+.=.+.+..++.++++...+|.|.+=
T Consensus 176 Ia~dEs~~~~~~~~~~i~~~a~d~i~ik 203 (327)
T 2opj_A 176 IAADESIRRAEDPLRVRDAEAADVVVLK 203 (327)
T ss_dssp EEC-----------CTTTTTCCSBEEEC
T ss_pred EEcCCCCCCHHHHHHHHHhCCCCEEEeC
Confidence 9998889999999988876678888773
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.017 Score=49.61 Aligned_cols=94 Identities=9% Similarity=0.100 Sum_probs=62.0
Q ss_pred HHHHHHhhcCC-ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccEEEc
Q 026945 9 SLVEKLALNLN-VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~-~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipvi~n 86 (230)
+.++.+++... .||.|-+. + .+-++.+.++|+|.|-+|..+..+ -.+.++.++.. .++++.++
T Consensus 183 ~av~~ar~~~~~~~I~Vev~---t----~eea~eal~aGaD~I~LDn~~~~~--------~~~~v~~l~~~~~~v~ieaS 247 (284)
T 1qpo_A 183 DALRAVRNAAPDLPCEVEVD---S----LEQLDAVLPEKPELILLDNFAVWQ--------TQTAVQRRDSRAPTVMLESS 247 (284)
T ss_dssp HHHHHHHHHCTTSCEEEEES---S----HHHHHHHGGGCCSEEEEETCCHHH--------HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeC---C----HHHHHHHHHcCCCEEEECCCCHHH--------HHHHHHHhhccCCCeEEEEE
Confidence 34555555431 25666554 2 344566667999999999843321 12445555542 25899999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
||| +++.+.++.+ +|+|++.+|.....-|++
T Consensus 248 GGI-t~~~i~~~a~-tGVD~isvG~l~~~a~~~ 278 (284)
T 1qpo_A 248 GGL-SLQTAATYAE-TGVDYLAVGALTHSVRVL 278 (284)
T ss_dssp SSC-CTTTHHHHHH-TTCSEEECGGGTSSBCCC
T ss_pred CCC-CHHHHHHHHh-cCCCEEEECHHHcCCCCc
Confidence 999 6888888775 999999999866666654
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.05 Score=48.64 Aligned_cols=99 Identities=15% Similarity=0.290 Sum_probs=67.9
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEecCCCCCcCC-CCCcccHHHHHHHHhhCCccEEEc-
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKDG-KKFRADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh~rt~~~~~~-~~~~~~~~~i~~i~~~~~ipvi~n- 86 (230)
+++++. .++.||.+|.-...+.++....++.+.+.|.. .+.+|..+..- +. .....|+..+..+++..++||+..
T Consensus 241 LL~~~a-~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~y-p~~~~~~ldl~~i~~lk~~~~lpV~~D~ 318 (385)
T 3nvt_A 241 LLKAAG-RVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTY-EKATRNTLDISAVPILKKETHLPVMVDV 318 (385)
T ss_dssp HHHHHH-TSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCS-CCSSSSBCCTTHHHHHHHHBSSCEEEEH
T ss_pred HHHHHH-ccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCC-CCCCccccCHHHHHHHHHhcCCCEEEcC
Confidence 455553 46899999998877888999999999999985 45556434331 11 123468999999999889999654
Q ss_pred ---CCCCCH--HHHHHHHHhhCCcEEEEeh
Q 026945 87 ---GNVRHM--EDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 ---GgI~s~--~da~~~l~~~gadgVmigR 111 (230)
+|-+.. .-+..+.. .||||+||=+
T Consensus 319 th~~G~r~~v~~~a~AAvA-~GA~gl~iE~ 347 (385)
T 3nvt_A 319 THSTGRKDLLLPCAKAALA-IEADGVMAEV 347 (385)
T ss_dssp HHHHCCGGGHHHHHHHHHH-TTCSEEEEEB
T ss_pred CCCCCccchHHHHHHHHHH-hCCCEEEEEe
Confidence 222221 23444554 7999999954
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.03 Score=44.93 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=60.8
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHHHHHHH
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHMEDVQKC 98 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~da~~~ 98 (230)
.|+.+=+|. .+.+++.++++.+.+.|++.|.+|.++.. -.+.++.+++.++ -.+++.|-+.+++++..+
T Consensus 10 ~~~i~~~~~-~~~~~~~~~~~~~~~~G~~~iev~~~~~~---------~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a 79 (205)
T 1wa3_A 10 HKIVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTVPD---------ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKA 79 (205)
T ss_dssp HCEEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHH
T ss_pred CCEEEEEec-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCcEEEecccCCHHHHHHH
Confidence 466666774 45688999999999999999999987531 1356788877653 224556678999999988
Q ss_pred HHhhCCcEEEEehh
Q 026945 99 LEETGCEGVLSAES 112 (230)
Q Consensus 99 l~~~gadgVmigR~ 112 (230)
.+ .|+|.| ++-+
T Consensus 80 ~~-~Gad~i-v~~~ 91 (205)
T 1wa3_A 80 VE-SGAEFI-VSPH 91 (205)
T ss_dssp HH-HTCSEE-ECSS
T ss_pred HH-cCCCEE-EcCC
Confidence 86 899999 7644
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.015 Score=51.70 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=57.0
Q ss_pred CCceEEEEECC----C-CChHHHHHHHHHHHHcCCCEEEEecCCCC---CcCCCCCc--ccHHHHHHHHhhCCccEEEc-
Q 026945 18 LNVPVSCKIRV----F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRD---EKDGKKFR--ADWNAIKAVKNALRIPVLAN- 86 (230)
Q Consensus 18 ~~~pvsvKiR~----g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~---~~~~~~~~--~~~~~i~~i~~~~~ipvi~n- 86 (230)
-+.|+..-+.. + ++.+...+.++.+ +++++.||--... +..+...- -.++.++++++.+++||++=
T Consensus 118 p~~~~~anlg~~ql~~~~~~~~~~~av~~~---~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~ 194 (368)
T 3vkj_A 118 PTIPIIANLGMPQLVKGYGLKEFQDAIQMI---EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKE 194 (368)
T ss_dssp SSSCEEEEEEGGGGGTTCCHHHHHHHHHHT---TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEEC
T ss_pred cCcceecCcCeeecCCCCCHHHHHHHHHHh---cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 36788877765 4 6655544444444 6677777732211 10111100 14778999999999999984
Q ss_pred -CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 87 -GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 87 -GgI~s~~da~~~l~~~gadgVmi 109 (230)
|+-.|++++..+.+ .|+|+|.+
T Consensus 195 vG~g~s~~~A~~l~~-aGad~I~V 217 (368)
T 3vkj_A 195 SGNGISMETAKLLYS-YGIKNFDT 217 (368)
T ss_dssp SSSCCCHHHHHHHHH-TTCCEEEC
T ss_pred CCCCCCHHHHHHHHh-CCCCEEEE
Confidence 54468999988775 89999987
|
| >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.061 Score=48.48 Aligned_cols=94 Identities=7% Similarity=0.029 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC--
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-- 80 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-- 80 (230)
+.-.+.++++++++ ++.+.+-..-+|+.++++++++.+++.++.+|. | .. .+-||+..+++++.++
T Consensus 206 ~~d~~~v~avrea~G~~~~L~vDaN~~~~~~~Ai~~~~~l~~~~i~~iE-------q--Pl-~~~d~~~~~~l~~~~~~~ 275 (415)
T 2p3z_A 206 RKDAAMVADMREKCGPDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIE-------E--CL-PPQQYEGYRELKRNAPAG 275 (415)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHHHGGGTCCEEE-------C--CS-CTTCHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCceEe-------C--CC-CcchHHHHHHHHHhcCCC
Confidence 34557788888765 577777777789989999999999999988886 2 11 2348999999999888
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++.. +|.|.+
T Consensus 276 ipIa~dE~~~~~~~~~~~i~~~-~d~i~i 303 (415)
T 2p3z_A 276 MMVTSGEHHGTLQSFRTLAETG-IDIMQP 303 (415)
T ss_dssp CEEEECTTCCSHHHHHHHHHTT-CSEECC
T ss_pred CcEEcCCCCCCHHHHHHHHHcC-CCEEEe
Confidence 8988877789999999999865 998866
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.07 Score=45.51 Aligned_cols=118 Identities=14% Similarity=0.218 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcc--cHHHHHHHHhh-
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA--DWNAIKAVKNA- 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~--~~~~i~~i~~~- 78 (230)
.+-+...++.|...+++||.+-+-.|+ +..+..+.++.+.++|+..|.+-+......... -+. ..+.|+.+++.
T Consensus 61 ~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l-~~~~e~~~~I~aa~~a~ 139 (275)
T 2ze3_A 61 RDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGLTPTEL-YDLDSQLRRIEAARAAI 139 (275)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCB-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCcc-CCHHHHHHHHHHHHHhH
Confidence 455667788888888999999998885 467889999999999999999987653110010 011 12344555444
Q ss_pred --CCccEEEcCCCCC------------HHHHH---HHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 79 --LRIPVLANGNVRH------------MEDVQ---KCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 79 --~~ipvi~nGgI~s------------~~da~---~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.++|+..+|-... .+++. +.+.+.|||+|++= .+.++..++++.
T Consensus 140 ~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e--~~~~~~~~~~i~ 200 (275)
T 2ze3_A 140 DASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVP--LALQSQDIRALA 200 (275)
T ss_dssp HHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECT--TCCCHHHHHHHH
T ss_pred hhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHH
Confidence 2688888775443 23332 13345799999872 234445555443
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.066 Score=46.55 Aligned_cols=93 Identities=12% Similarity=0.183 Sum_probs=69.4
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
.+++.+.+.++.+++.++.|+.|.+-... .+..+.++.+.++|++.|.+|+.. + .+.++.+++ .++
T Consensus 46 ~~~~~~~~~i~~i~~~~~~p~gvnl~~~~--~~~~~~~~~a~~~g~d~V~~~~g~---------p--~~~i~~l~~-~g~ 111 (332)
T 2z6i_A 46 APKEVVKANIDKIKSLTDKPFGVNIMLLS--PFVEDIVDLVIEEGVKVVTTGAGN---------P--SKYMERFHE-AGI 111 (332)
T ss_dssp CCHHHHHHHHHHHHHHCCSCEEEEECTTS--TTHHHHHHHHHHTTCSEEEECSSC---------G--GGTHHHHHH-TTC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEecCCC--CCHHHHHHHHHHCCCCEEEECCCC---------h--HHHHHHHHH-cCC
Confidence 36778888899998877889988876521 224567888889999999999842 1 245666766 478
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE-eh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS-AE 111 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi-gR 111 (230)
||+. .+.+.+++..+.+ .|+|+|.+ |+
T Consensus 112 ~v~~--~v~~~~~a~~~~~-~GaD~i~v~g~ 139 (332)
T 2z6i_A 112 IVIP--VVPSVALAKRMEK-IGADAVIAEGM 139 (332)
T ss_dssp EEEE--EESSHHHHHHHHH-TTCSCEEEECT
T ss_pred eEEE--EeCCHHHHHHHHH-cCCCEEEEECC
Confidence 8885 4789999887665 89999988 54
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.016 Score=48.39 Aligned_cols=93 Identities=10% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEc
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~n 86 (230)
.++++..++. ++|+..-+. +. .-+....++|+|+|-+.+-. ..| ..++++.++.-+ ++|++..
T Consensus 117 ~~vi~~~~~~-gi~~ipGv~---Tp----tEi~~A~~~Gad~vK~FPa~------~~g--G~~~lkal~~p~p~ip~~pt 180 (232)
T 4e38_A 117 PNTVRACQEI-GIDIVPGVN---NP----STVEAALEMGLTTLKFFPAE------ASG--GISMVKSLVGPYGDIRLMPT 180 (232)
T ss_dssp HHHHHHHHHH-TCEEECEEC---SH----HHHHHHHHTTCCEEEECSTT------TTT--HHHHHHHHHTTCTTCEEEEB
T ss_pred HHHHHHHHHc-CCCEEcCCC---CH----HHHHHHHHcCCCEEEECcCc------ccc--CHHHHHHHHHHhcCCCeeeE
Confidence 3455555443 777765543 22 22455678999999985531 111 248899998876 6999999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
||| +++++.+.++ .|+.++.+|. .+.+|.+
T Consensus 181 GGI-~~~n~~~~l~-aGa~~~vgGs-~l~~~~~ 210 (232)
T 4e38_A 181 GGI-TPSNIDNYLA-IPQVLACGGT-WMVDKKL 210 (232)
T ss_dssp SSC-CTTTHHHHHT-STTBCCEEEC-GGGCHHH
T ss_pred cCC-CHHHHHHHHH-CCCeEEEECc-hhcChHH
Confidence 999 5899999996 8999887776 3444443
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.019 Score=52.65 Aligned_cols=71 Identities=23% Similarity=0.400 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..+.++.+.++|++.|.+|.-. +. ....|+.++++++.+ ++||++ |++.+.+++..+.+ .|+|+|.+|-
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~-----G~-~~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~-~G~d~I~v~~ 307 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAH-----GH-SRRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIK-AGADAVKVGV 307 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC-----CS-SHHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHH-TTCSEEEECS
T ss_pred HhHHHHHHHHHHhCCCEEEEEecC-----Cc-hHHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHH-cCCCEEEEcC
Confidence 345678889999999999997632 21 133689999999998 699887 77889999987775 8999999854
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.073 Score=47.63 Aligned_cols=89 Identities=18% Similarity=0.308 Sum_probs=62.7
Q ss_pred CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC------------------------------C-----cCCC
Q 026945 19 NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD------------------------------E-----KDGK 63 (230)
Q Consensus 19 ~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~------------------------------~-----~~~~ 63 (230)
+.|+.+-+-...+.+.+.+.+++++++|++.|.+.--+.. + ..+.
T Consensus 146 ~~~~~~QLy~~~d~~~~~~~~~ra~~~G~~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~ 225 (392)
T 2nzl_A 146 EALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDS 225 (392)
T ss_dssp TSEEEEEECCBSSHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------
T ss_pred CCcEEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcc
Confidence 4677777755456677889999999999999887421100 0 0000
Q ss_pred ----------CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 64 ----------KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 64 ----------~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+...|+.++++++.+++||++- ++.+++++..+.+ .|+|+|.+
T Consensus 226 ~~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivK-gv~~~e~A~~a~~-aGad~I~v 279 (392)
T 2nzl_A 226 GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAK-GILRGDDAREAVK-HGLNGILV 279 (392)
T ss_dssp CHHHHHHHHBCTTCCHHHHHHHC--CCSCEEEE-EECCHHHHHHHHH-TTCCEEEE
T ss_pred hHHHHHhhcCChHHHHHHHHHHHHhhCCCEEEE-ecCCHHHHHHHHH-cCCCEEEe
Confidence 12247999999999999999985 4688999998876 89999988
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.85 E-value=0.02 Score=51.27 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+..+.++.+.++|++.|.++.-. +. +...|+.++++++.+ ++||++ |++.+.+++..+.+ .|+|+|.+|
T Consensus 153 ~~~~~a~~~~~~G~d~i~i~~~~-----g~-~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~-~Gad~I~vg 222 (404)
T 1eep_A 153 DTIERVEELVKAHVDILVIDSAH-----GH-STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVG 222 (404)
T ss_dssp THHHHHHHHHHTTCSEEEECCSC-----CS-SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHT-TTCSEEEEC
T ss_pred hHHHHHHHHHHCCCCEEEEeCCC-----CC-hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHh-cCCCEEEEC
Confidence 35677788889999999985321 11 134588999999988 799987 77889999988775 899999994
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.037 Score=47.53 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=62.4
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCCC---EEEEecCCCCCcC--CC--CCcccHHHHHHHHhhCCccEE--EcCC
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS---LLAVHGRTRDEKD--GK--KFRADWNAIKAVKNALRIPVL--ANGN 88 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~---~i~vh~rt~~~~~--~~--~~~~~~~~i~~i~~~~~ipvi--~nGg 88 (230)
.+.|+.+-+. +.+.++..+.++.+.++|+| .|.+|.-...... .+ ....-++.++.+++.+++||+ .+++
T Consensus 92 ~~~p~~~~i~-g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~ 170 (314)
T 2e6f_A 92 SKKPLFLSIS-GLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPY 170 (314)
T ss_dssp TTCCEEEEEC-CSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCC
T ss_pred CCCcEEEEeC-CCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 4789988886 46778899999999999999 9999864322110 01 111125678888888889987 4556
Q ss_pred CCCHHHH---HHHHHhhC-CcEEEEe
Q 026945 89 VRHMEDV---QKCLEETG-CEGVLSA 110 (230)
Q Consensus 89 I~s~~da---~~~l~~~g-adgVmig 110 (230)
+ +.+++ .+.+.+.| +|+|.+.
T Consensus 171 ~-~~~~~~~~a~~~~~aG~~d~i~v~ 195 (314)
T 2e6f_A 171 F-DIAHFDTAAAVLNEFPLVKFVTCV 195 (314)
T ss_dssp C-CHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred C-CHHHHHHHHHHHHhcCCceEEEEe
Confidence 5 55664 34455689 9998653
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0052 Score=67.49 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=40.7
Q ss_pred HHHHhhCCccEEEcCCCCCHHHHHHHH-----------HhhCCcEEEEehhhhhCCc
Q 026945 73 KAVKNALRIPVLANGNVRHMEDVQKCL-----------EETGCEGVLSAESLLENPA 118 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s~~da~~~l-----------~~~gadgVmigR~~l~nP~ 118 (230)
.++++.+++||++.|||.+++++..++ . .|||||.+|..++.-+.
T Consensus 599 ~~ir~~~~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~-lGAdGV~vGTrfl~t~E 654 (3089)
T 3zen_D 599 SELRSRSNITICVGGGIGTPERSAEYLSGRWAEVHGYPL-MPIDGILVGTAAMATLE 654 (3089)
T ss_dssp HHHTTCTTEEEEEESSCCCTTTTHHHHHTGGGGTTTCCC-CCCSEEECSSTTTTCTT
T ss_pred HHHhhcCCCeEEEEeCCCCHHHHHHHhccccccccCccC-CCCCEEEecHHHHhCcc
Confidence 677778899999999999999999999 5 69999999999998765
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.028 Score=48.09 Aligned_cols=81 Identities=27% Similarity=0.403 Sum_probs=52.5
Q ss_pred HHHHHHHHcCCCEEEEecC-CCCCcCCCCCc---cc-HHHHHHHHhh---C--CccEEEcC-CCCCHHHHHHHHHhh-CC
Q 026945 37 KYAKMLEDAGCSLLAVHGR-TRDEKDGKKFR---AD-WNAIKAVKNA---L--RIPVLANG-NVRHMEDVQKCLEET-GC 104 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~r-t~~~~~~~~~~---~~-~~~i~~i~~~---~--~ipvi~nG-gI~s~~da~~~l~~~-ga 104 (230)
+-++.+.++|+|.|.+|.. |....-+.... .+ -+.+.++.+. + ++.|++.| +|.+++|+..+++.+ |+
T Consensus 174 eeA~amA~agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~ 253 (286)
T 2p10_A 174 EDAVAMAKAGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGC 253 (286)
T ss_dssp HHHHHHHHHTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCc
Confidence 4466678999999999976 32221111111 12 3444444332 2 46666555 999999999999853 69
Q ss_pred cEEEEehhhhhCC
Q 026945 105 EGVLSAESLLENP 117 (230)
Q Consensus 105 dgVmigR~~l~nP 117 (230)
+|+..+.++..=|
T Consensus 254 ~G~~gASsier~p 266 (286)
T 2p10_A 254 HGFYGASSMERLP 266 (286)
T ss_dssp CEEEESHHHHHHH
T ss_pred cEEEeehhhhcCC
Confidence 9999999888776
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.078 Score=43.77 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=68.1
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+++.+.+ .||..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++.++--+++.|-+
T Consensus 10 ~~~~l~~---~~ii~vir~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~l~vgaGtv 76 (224)
T 1vhc_A 10 IIEKLRE---LKIVPVIAL-DNADDILPLADTLAKNGLSVAEITFRSE---------AAADAIRLLRANRPDFLIAAGTV 76 (224)
T ss_dssp HHHHHHH---HCEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEETTST---------THHHHHHHHHHHCTTCEEEEESC
T ss_pred HHHHHHH---CCeEEEEeC-CCHHHHHHHHHHHHHcCCCEEEEeccCc---------hHHHHHHHHHHhCcCcEEeeCcE
Confidence 4455544 345444675 4567899999999999999999964432 23478888888875445566778
Q ss_pred CCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 90 RHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+.+++..+++ .|||+|+.+- .++.+..
T Consensus 77 l~~d~~~~A~~-aGAd~v~~p~---~d~~v~~ 104 (224)
T 1vhc_A 77 LTAEQVVLAKS-SGADFVVTPG---LNPKIVK 104 (224)
T ss_dssp CSHHHHHHHHH-HTCSEEECSS---CCHHHHH
T ss_pred eeHHHHHHHHH-CCCCEEEECC---CCHHHHH
Confidence 89999999997 8999998873 4554433
|
| >3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.1 Score=46.49 Aligned_cols=91 Identities=12% Similarity=0.210 Sum_probs=65.1
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
+.++++++.+ ++.+.+-..-+|+..++.. ++.+++.++.+|. | .. .+-|++..+++++.+++||.+.=
T Consensus 179 ~~v~avR~~~~~~~l~vDaN~~~~~~~A~~-~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ipIa~dE 247 (388)
T 3qld_A 179 AAIKAVRLRYPDLAIAADANGSYRPEDAPV-LRQLDAYDLQFIE-------Q--PL-PEDDWFDLAKLQASLRTPVCLDE 247 (388)
T ss_dssp HHHHHHHHHCTTSEEEEECTTCCCGGGHHH-HHHGGGGCCSCEE-------C--CS-CTTCHHHHHHHHHHCSSCEEEST
T ss_pred HHHHHHHHHCCCCeEEEECCCCCChHHHHH-HHHHhhCCCcEEE-------C--CC-CcccHHHHHHHHHhCCCCEEeCC
Confidence 3455555544 3555555555666666664 6777777766664 2 11 23478999999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEe
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmig 110 (230)
.+.+..++.++++...+|.|.+=
T Consensus 248 ~~~~~~~~~~~~~~~a~d~v~~k 270 (388)
T 3qld_A 248 SVRSVRELKLTARLGAARVLNVK 270 (388)
T ss_dssp TCCSHHHHHHHHHHTCCSEEEEC
T ss_pred CCCCHHHHHHHHHcCCCCEEEEC
Confidence 89999999999987778988773
|
| >3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.037 Score=50.55 Aligned_cols=96 Identities=15% Similarity=0.086 Sum_probs=77.4
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR- 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~- 80 (230)
++.-.+.++++++++ ++++.+-..-+|+..+++++++.|++.++.+|. | .. .+-|++..+++++.++
T Consensus 199 ~~~di~rv~avRea~G~d~~L~vDaN~~wt~~~Ai~~~~~Le~~~l~~iE-------E--Pl-~~dd~~~la~L~~~~~~ 268 (455)
T 3fxg_A 199 LRKNVEFLRKHREAVGPDFPIMVDCYMSLNVSYTIELVKACLDLNINWWE-------E--CL-SPDDTDGFALIKRAHPT 268 (455)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHTGGGCCSEEE-------C--CS-CGGGGGGHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHhcccCCcceec-------C--CC-CcchHHHHHHHHHhCCC
Confidence 345567788888887 578888888889999999999999999998886 2 11 2347888999998874
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.=.+.+..++.++++...+|.|.+
T Consensus 269 iPIA~gEs~~s~~d~~~li~~~avDiiq~ 297 (455)
T 3fxg_A 269 VKFTTGEHEYSRYGFRKLVEGRNLDIIQP 297 (455)
T ss_dssp SEEEECTTCCHHHHHHHHHTTCCCSEECC
T ss_pred CeEECCCccCCHHHHHHHHHcCCCCEEEE
Confidence 88888778999999999998777887765
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.062 Score=46.20 Aligned_cols=91 Identities=15% Similarity=0.139 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--C--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--F--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-|+++++.++ +..+|+=+ + .+.+.....++...++|+|+|--+.... .+++..+.++.+++.
T Consensus 133 ~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~------~~gAT~edV~lM~~~ 205 (297)
T 4eiv_A 133 GESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGGDIISRAAVAALEGGADFLQTSSGLG------ATHATMFTVHLISIA 205 (297)
T ss_dssp HHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSS------SCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc-CCceEEEEecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCC------CCCCCHHHHHHHHHH
Confidence 45677777888888774 44566544 2 2323356788889999999997433211 234556655555443
Q ss_pred C------------------------CccEEEc-CCCCCHHHHHHHHH
Q 026945 79 L------------------------RIPVLAN-GNVRHMEDVQKCLE 100 (230)
Q Consensus 79 ~------------------------~ipvi~n-GgI~s~~da~~~l~ 100 (230)
+ ++.|=++ |||+|.+++.++++
T Consensus 206 v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIrt~e~A~~~i~ 252 (297)
T 4eiv_A 206 LREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVHMAETADFLMQ 252 (297)
T ss_dssp HHHHHCC------------------CCEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhccccccccccccccccccCCceeEEecCCCCCCHHHHHHHHH
Confidence 3 3778888 99999999999997
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.11 Score=44.85 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-----ccc----HHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-----RAD----WNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-----~~~----~~~i~ 73 (230)
.+-+...++.|...+++||.+-+-.|+ +..+..+.++.+.++|+..|++-+.....+.+..+ -.. .+.|+
T Consensus 64 ~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~ 143 (295)
T 1s2w_A 64 WTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIK 143 (295)
T ss_dssp CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHH
Confidence 345667788888888999999998875 45678888999999999999998865322222211 111 23344
Q ss_pred HHHhhC-CccEEEcC--CCC-C---HHHHH---HHHHhhCCcEEEEehhhhhCCccccch
Q 026945 74 AVKNAL-RIPVLANG--NVR-H---MEDVQ---KCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 74 ~i~~~~-~ipvi~nG--gI~-s---~~da~---~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.+++.. ..++..+| |-. . .+++. +.+.+.|||+|.+=- .+.++..+.++
T Consensus 144 Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~-~~~~~~~~~~i 202 (295)
T 1s2w_A 144 ACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHS-KKADPSDIEAF 202 (295)
T ss_dssp HHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECC-CSSSSHHHHHH
T ss_pred HHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcC-CCCCHHHHHHH
Confidence 444442 33444444 333 1 24443 233458999998821 12344444444
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.075 Score=46.88 Aligned_cols=116 Identities=16% Similarity=0.235 Sum_probs=85.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC-CCHHHHHHHHHhhCCcEEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI-~s~~da~~~l~~~gadgVmi 109 (230)
|.+.+++=++.|.++|++.|-+.--+ ..+.+.+..|++.+++|+++ || +++.-+..+++ .|+|.+=|
T Consensus 44 D~~atv~Qi~~l~~aG~diVRvavp~---------~~~a~al~~I~~~~~vPlva--DiHf~~~lal~a~e-~G~dklRI 111 (366)
T 3noy_A 44 DVEATLNQIKRLYEAGCEIVRVAVPH---------KEDVEALEEIVKKSPMPVIA--DIHFAPSYAFLSME-KGVHGIRI 111 (366)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCS---------HHHHHHHHHHHHHCSSCEEE--ECCSCHHHHHHHHH-TTCSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCC---------hHHHHHHHHHHhcCCCCEEE--eCCCCHHHHHHHHH-hCCCeEEE
Confidence 56678888999999999999885422 22358889999999999986 77 78999999997 79999999
Q ss_pred ehhhhhCCccccchhhh--hh-------ccCccc-------cCCCChHHHHHHHHHHHHHHhhCC
Q 026945 110 AESLLENPALFAGFRTA--EW-------IVGSEE-------ISKDGNLDQADLLVEYLKLCEKYP 158 (230)
Q Consensus 110 gR~~l~nP~lf~~~~~~--~~-------~~~g~~-------~~~~~~~~~~~~~~~yl~~~~~~~ 158 (230)
-=|-+++++-|.++-.. .+ .+.|+. +-.+++....+-+++|.+++++.+
T Consensus 112 NPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~g 176 (366)
T 3noy_A 112 NPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWG 176 (366)
T ss_dssp CHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999888766654210 00 001211 112566678888999999998765
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.093 Score=45.71 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=57.9
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+-++++++.. ..||.|-+. +.+ -++.+.++|+|.|-+... +.+.++++.+.+ ++++.+
T Consensus 220 ~Av~~ar~~~p~~kIeVEVd---tld----ea~eAl~aGaD~I~LDn~------------~~~~l~~av~~l~~~v~iea 280 (320)
T 3paj_A 220 QAISTAKQLNPGKPVEVETE---TLA----ELEEAISAGADIIMLDNF------------SLEMMREAVKINAGRAALEN 280 (320)
T ss_dssp HHHHHHHHHSTTSCEEEEES---SHH----HHHHHHHTTCSEEEEESC------------CHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhCCCCeEEEEEC---CHH----HHHHHHHcCCCEEEECCC------------CHHHHHHHHHHhCCCCeEEE
Confidence 4445555443 345655444 223 344455689999998652 235555555544 689999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||| +++.+.++.+ +|+|++.+|.-...-|+
T Consensus 281 SGGI-t~~~I~~~a~-tGVD~isvGalt~sa~~ 311 (320)
T 3paj_A 281 SGNI-TLDNLKECAE-TGVDYISVGALTKHLKA 311 (320)
T ss_dssp ESSC-CHHHHHHHHT-TTCSEEECTHHHHSBCC
T ss_pred ECCC-CHHHHHHHHH-cCCCEEEECceecCCCc
Confidence 9999 5888888775 99999999974433444
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.18 Score=43.46 Aligned_cols=119 Identities=10% Similarity=0.140 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC---cccH-HHHHHH---
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---RADW-NAIKAV--- 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~---~~~~-~~i~~i--- 75 (230)
.+-+...++.|...+++||.+-+-.|. +..+..+.++.+.++|+..|.+-+.....+.+..+ -.+. +.+.+|
T Consensus 68 ~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa 147 (298)
T 3eoo_A 68 MDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAA 147 (298)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHH
Confidence 455666777887888999999998876 55678888999999999999998876543333211 1222 334444
Q ss_pred HhhC-CccEEEcCCCCCH--HHHHH------HHHhhCCcEEEEehhhhhCCccccchh
Q 026945 76 KNAL-RIPVLANGNVRHM--EDVQK------CLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 76 ~~~~-~ipvi~nGgI~s~--~da~~------~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++.. +.+++.|+...+. +.+.+ ...+.|||+|++= .+.++..+.++.
T Consensus 148 ~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~--~~~~~ee~~~~~ 203 (298)
T 3eoo_A 148 VDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPE--AMKTLDDYRRFK 203 (298)
T ss_dssp HHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEEC--CCCSHHHHHHHH
T ss_pred HHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeC--CCCCHHHHHHHH
Confidence 3332 4556666654443 22222 2234899999882 234565555443
|
| >2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.062 Score=48.56 Aligned_cols=72 Identities=13% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcC-CCCCHHHHHHHHHhhC
Q 026945 28 VFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANG-NVRHMEDVQKCLEETG 103 (230)
Q Consensus 28 ~g~~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nG-gI~s~~da~~~l~~~g 103 (230)
-+|+.++++++++.+.+ .++.+|. + .. .+-||+..+++++.+ ++||++.= .+.++.++.+.++...
T Consensus 265 ~~~t~~~ai~~~~~L~~~~~i~~iE-------e--Pl-~~~d~~~~~~l~~~~~~~ipIa~dEl~~~~~~~~~~~i~~~a 334 (431)
T 2fym_A 265 KAFTSEEFTHFLEELTKQYPIVSIE-------D--GL-DESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGI 334 (431)
T ss_dssp EEECHHHHHHHHHHHHHHSCEEEEE-------S--CS-CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHhCCceEEE-------C--CC-CcccHHHHHHHHHHhCCCCeEEeCCcccCCHHHHHHHHHhCC
Confidence 44788889999999988 8877665 2 12 245899999999988 89998866 6899999999998778
Q ss_pred CcEEEE
Q 026945 104 CEGVLS 109 (230)
Q Consensus 104 adgVmi 109 (230)
+|.|.+
T Consensus 335 ~d~i~i 340 (431)
T 2fym_A 335 ANSILI 340 (431)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 898887
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.078 Score=44.38 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=61.1
Q ss_pred HHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~ 70 (230)
+.+.+..+++.-...+..=+=.+ ++.+++.+.++.++++|+|.|.+-.-.... ..+.....-++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~ 84 (262)
T 1rd5_A 5 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 84 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 45566666544333333333233 456789999999999999999995322110 01111111256
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHH---HHHHHHhhCCcEEEEe
Q 026945 71 AIKAVKNALRIPVLANGNVRHMED---VQKCLEETGCEGVLSA 110 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~d---a~~~l~~~gadgVmig 110 (230)
.++++++.+++||++++.. ++.. +..+. +.|+|||.+.
T Consensus 85 ~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~-~aGadgv~v~ 125 (262)
T 1rd5_A 85 MLREVTPELSCPVVLLSYY-KPIMFRSLAKMK-EAGVHGLIVP 125 (262)
T ss_dssp HHHHHGGGCSSCEEEECCS-HHHHSCCTHHHH-HTTCCEEECT
T ss_pred HHHHHHhcCCCCEEEEecC-cHHHHHHHHHHH-HcCCCEEEEc
Confidence 7888888889999987533 2211 22344 5899999985
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.041 Score=48.49 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHHHHHHHHc--CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDA--GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~--G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+.++.+.+. |++.+.+|.-. +. ...-|+.++++++.. ++||++ |++.|++++..+.+ .|+|+|.++
T Consensus 120 ~~~~~~l~~~~~g~~~i~i~~~~-----g~-~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~-aGaD~I~v~ 189 (351)
T 2c6q_A 120 FEQLEQILEAIPQVKYICLDVAN-----GY-SEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELIL-SGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSC-----TT-BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred HHHHHHHHhccCCCCEEEEEecC-----CC-cHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHH-hCCCEEEEC
Confidence 4555666666 99999998532 11 123588999999998 799886 77889999998886 899999886
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.13 Score=42.55 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
...++++.+.+. ||..=+|. .+.++..++++.+.+.|++.|.+.-++ +...+.++++++.++--+++
T Consensus 15 ~~~~~~~~l~~~---~ii~V~r~-~~~~~~~~~~~al~~gGv~~iel~~k~---------~~~~~~i~~l~~~~~~~~ig 81 (225)
T 1mxs_A 15 KAARIDAICEKA---RILPVITI-AREEDILPLADALAAGGIRTLEVTLRS---------QHGLKAIQVLREQRPELCVG 81 (225)
T ss_dssp HHHHHHHHHHHH---SEEEEECC-SCGGGHHHHHHHHHHTTCCEEEEESSS---------THHHHHHHHHHHHCTTSEEE
T ss_pred hHHHHHHHHHHC---CEEEEEeC-CCHHHHHHHHHHHHHCCCCEEEEecCC---------ccHHHHHHHHHHhCcccEEe
Confidence 344556666543 45554675 356789999999999999999986432 22346788888877544556
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.|-+.+.+++..+++ .|||+|.+|
T Consensus 82 agtvl~~d~~~~A~~-aGAd~v~~p 105 (225)
T 1mxs_A 82 AGTVLDRSMFAAVEA-AGAQFVVTP 105 (225)
T ss_dssp EECCCSHHHHHHHHH-HTCSSEECS
T ss_pred eCeEeeHHHHHHHHH-CCCCEEEeC
Confidence 677889999999997 899999987
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.022 Score=46.94 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+.+.+.++.+++.- ...+.|-+-...+.+. ++.+.+.|++.+.+|--...+..+. ....+.++.+++.. +
T Consensus 95 ~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~----~~~~~~~~~~~~v~~~a~~~~~~Gv--v~s~~e~~~ir~~~~~~ 168 (221)
T 3exr_A 95 PTMKAARKAIEDINPDKGEIQVELYGDWTYDQ----AQQWLDAGISQAIYHQSRDALLAGE--TWGEKDLNKVKKLIEMG 168 (221)
T ss_dssp HHHHHHHHHHHHHCTTTCEEEEECCSSCCHHH----HHHHHHTTCCEEEEECCHHHHHHTC--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcceEEEEEcCCCCHHH----HHHHHcCCHHHHHHHHHHhcCCCcc--ccCHHHHHHHHHhhcCC
Confidence 44566666665532 1333443333334333 3355678999998875332222222 12344566666654 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+++.+.||| +++++..+.+ .|+|.+.+||++...++
T Consensus 169 ~~i~v~gGI-~~~~~~~~~~-aGad~~VvG~~I~~a~d 204 (221)
T 3exr_A 169 FRVSVTGGL-SVDTLKLFEG-VDVFTFIAGRGITEAKN 204 (221)
T ss_dssp CEEEEESSC-CGGGGGGGTT-CCCSEEEECHHHHTSSS
T ss_pred ceEEEECCC-CHHHHHHHHH-CCCCEEEECchhhCCCC
Confidence 888999999 5777776654 89999999998886543
|
| >1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.12 Score=46.44 Aligned_cols=94 Identities=12% Similarity=0.135 Sum_probs=73.8
Q ss_pred HHHHHHHHhhcC--CceEEEEECCC------CChHHHHHHHHHHHHc--CCC-EEEEecCCCCCcCCCC---CcccHHHH
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVF------PNLQDTIKYAKMLEDA--GCS-LLAVHGRTRDEKDGKK---FRADWNAI 72 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g------~~~~~~~~~a~~l~~~--G~~-~i~vh~rt~~~~~~~~---~~~~~~~i 72 (230)
..+.++++++.+ ++.+.+-..-+ |+.++++++++.+++. ++. +|. | ... .+-||+..
T Consensus 218 d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~~~~a~~~~~~L~~~~~~i~~~iE-------q--P~~~~~~~~d~~~~ 288 (413)
T 1kcz_A 218 LRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVDIKAMADYIQTLAEAAKPFHLRIE-------G--PMDVEDRQKQMEAM 288 (413)
T ss_dssp HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHHHHHHTTSCEEEE-------C--SBCCSSHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEecCCCcccccCCCHHHHHHHHHHHHhhcCCcceEEe-------c--CCCCCCCcccHHHH
Confidence 457788998876 46666666666 8889999999999998 666 554 2 111 13378999
Q ss_pred HHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 73 KAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 73 ~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++++. .++||.+.=.+.+++++.++++...+|.|.+
T Consensus 289 ~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~i 330 (413)
T 1kcz_A 289 RDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQI 330 (413)
T ss_dssp HHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEE
T ss_pred HHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEe
Confidence 999988 8899999878999999999998777898877
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.24 Score=42.64 Aligned_cols=119 Identities=13% Similarity=0.194 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-c---ccHH---HHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-R---ADWN---AIKA 74 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~---~~~~---~i~~ 74 (230)
.+-+...++.|...++.||.+-+-.|. +..+..+.++.+.++|++.|.+-+.....+.+..+ . +.-+ .|+.
T Consensus 63 ~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~A 142 (295)
T 1xg4_A 63 LDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRA 142 (295)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHH
Confidence 456677788888888999999998875 56788999999999999999998865432222221 1 1123 3444
Q ss_pred HHhhC-CccEEEcCCCCCH-----HHHH---HHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 75 VKNAL-RIPVLANGNVRHM-----EDVQ---KCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 75 i~~~~-~ipvi~nGgI~s~-----~da~---~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+++.. +.++..+|-.... +++. +.+++.|||+|++= .+.++..++++.
T Consensus 143 a~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i~~e--~~~~~~~~~~i~ 199 (295)
T 1xg4_A 143 AVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE--AITELAMYRQFA 199 (295)
T ss_dssp HHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET--TCCSHHHHHHHH
T ss_pred HHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEEEEe--CCCCHHHHHHHH
Confidence 44443 4556666654432 2332 23345899999882 233444444443
|
| >3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.05 Score=47.54 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN 86 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n 86 (230)
.+.++++++..+..+.+-..-+| +..++.++++.+++.|+.+|. | .. .+-|++..+++++.+++||.+.
T Consensus 162 ~~~v~avR~~~~~~l~vDaN~~~t~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ipIa~d 231 (338)
T 3ijl_A 162 KEMIETIRSVTDLPIAVDANQGWKDRQYALDMIHWLKEKGIVMIE-------Q--PM-PKEQLDDIAWVTQQSPLPVFAD 231 (338)
T ss_dssp HHHHHHHHTTCCCCEEEECTTCCCCHHHHHHHHHHHHHTTEEEEE-------C--CS-CTTCHHHHHHHHHTCSSCEEES
T ss_pred HHHHHHHHhhcCCcEEEECcCCCCCHHHHHHHHHHHhhCCCCEEE-------C--CC-CCCcHHHHHHHHhcCCCCEEEC
Confidence 45678888887766777777789 588999999999999988775 2 11 2347899999999999999998
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmi 109 (230)
=.+.+..++.+++ ..+|.|.+
T Consensus 232 E~~~~~~~~~~~~--~a~d~i~~ 252 (338)
T 3ijl_A 232 ESLQRLGDVAALK--GAFTGINI 252 (338)
T ss_dssp TTCCSGGGTGGGB--TTBSEEEE
T ss_pred CCCCCHHHHHHHH--hhCCEEEe
Confidence 8899998887764 35776653
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.13 Score=43.90 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHhhcC---CceEEEEECCCC-----------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 3 NLPLVKSLVEKLALNL---NVPVSCKIRVFP-----------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~---~~pvsvKiR~g~-----------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
+.+...+-|++++++. ++|+.+--|..- ..+++++=++.++++|++.|.+++. .+
T Consensus 124 ~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~-----------~~ 192 (275)
T 2ze3_A 124 DLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLA-----------LQ 192 (275)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTC-----------CC
T ss_pred CHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCC-----------CC
Confidence 3445566677776652 678777777632 2467888888999999999998773 24
Q ss_pred HHHHHHHHhhCCccEEEcC--CCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 69 WNAIKAVKNALRIPVLANG--NVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nG--gI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.++++.+.+++|+-.++ +..|.+ -|.+.|+..|..|-.
T Consensus 193 ~~~~~~i~~~~~~P~n~~~~~~~~~~~----eL~~lGv~~v~~~~~ 234 (275)
T 2ze3_A 193 SQDIRALADALRVPLNVMAFPGSPVPR----ALLDAGAARVSFGQS 234 (275)
T ss_dssp HHHHHHHHHHCSSCEEEECCTTSCCHH----HHHHTTCSEEECTTH
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCHH----HHHHcCCcEEEEChH
Confidence 5788999999999987664 345543 344589999988644
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.11 Score=42.56 Aligned_cols=87 Identities=25% Similarity=0.319 Sum_probs=65.9
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV 89 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI 89 (230)
+++.+.+ .||..=+|. .+.++..++++.+.+.|++.|.+.-++. ...+.++++++.++-.+++.|-+
T Consensus 9 ~~~~l~~---~~~i~v~r~-~~~~~~~~~~~al~~gGv~~iel~~k~~---------~~~~~i~~l~~~~~~~~vgagtv 75 (214)
T 1wbh_A 9 AESILTT---GPVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTE---------CAVDAIRAIAKEVPEAIVGAGTV 75 (214)
T ss_dssp HHHHHHS---CSEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCST---------THHHHHHHHHHHCTTSEEEEESC
T ss_pred HHHHHHH---CCEEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEeCCCh---------hHHHHHHHHHHHCcCCEEeeCEE
Confidence 4444543 345554675 4567889999999999999999875432 23478888888876556677779
Q ss_pred CCHHHHHHHHHhhCCcEEEEe
Q 026945 90 RHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 90 ~s~~da~~~l~~~gadgVmig 110 (230)
-+.+++..+++ .|||+|..+
T Consensus 76 i~~d~~~~A~~-aGAd~v~~p 95 (214)
T 1wbh_A 76 LNPQQLAEVTE-AGAQFAISP 95 (214)
T ss_dssp CSHHHHHHHHH-HTCSCEEES
T ss_pred EEHHHHHHHHH-cCCCEEEcC
Confidence 99999999997 899999987
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.082 Score=45.38 Aligned_cols=90 Identities=14% Similarity=0.118 Sum_probs=58.2
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+-++.+++.. ..||-|-+. +. +-++.+.++|+|.|-++.-+ .+.++++.+.+ ++++.+
T Consensus 187 ~Av~~ar~~~~~~~IeVEv~---tl----~ea~eAl~aGaD~I~LDn~~------------~~~l~~av~~~~~~v~iea 247 (287)
T 3tqv_A 187 KAVTKAKKLDSNKVVEVEVT---NL----DELNQAIAAKADIVMLDNFS------------GEDIDIAVSIARGKVALEV 247 (287)
T ss_dssp HHHHHHHHHCTTSCEEEEES---SH----HHHHHHHHTTCSEEEEESCC------------HHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHhhCCCCcEEEEeC---CH----HHHHHHHHcCCCEEEEcCCC------------HHHHHHHHHhhcCCceEEE
Confidence 3444444432 456666444 22 33455567899999986622 24455544443 689999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| +++.+.++.+ +|+|++.+|.-.-.-|++
T Consensus 248 SGGI-t~~~i~~~a~-tGVD~IsvGalt~sa~~l 279 (287)
T 3tqv_A 248 SGNI-DRNSIVAIAK-TGVDFISVGAITKHIKAI 279 (287)
T ss_dssp ESSC-CTTTHHHHHT-TTCSEEECSHHHHSBCCC
T ss_pred ECCC-CHHHHHHHHH-cCCCEEEEChhhcCCccc
Confidence 9999 6788887665 999999998655445554
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.08 Score=43.85 Aligned_cols=41 Identities=29% Similarity=0.377 Sum_probs=34.8
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++++++.|+|++.+++..+. ..|+||+.||++++.-+++..
T Consensus 176 ~~~ilyggsV~~~n~~~~~~-~~~vDG~LVG~a~l~a~~~~~ 216 (225)
T 1hg3_A 176 EVKVLCGAGISTGEDVKKAI-ELGTVGVLLASGVTKAKDPEK 216 (225)
T ss_dssp TSEEEEESSCCSHHHHHHHH-HTTCSEEEESHHHHTCSSHHH
T ss_pred CCEEEEeCCCCcHHHHHHHH-hCCCCEEEeCHHHHCCcCHHH
Confidence 58999999999999988766 489999999999998766444
|
| >4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.13 Score=46.88 Aligned_cols=97 Identities=10% Similarity=0.070 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++++.+-..-+|+.++++++++.+++. +.++. |- .......+.+..+++++.++
T Consensus 230 ~~~~di~~v~avrea~pd~~L~vDaN~~wt~~~Ai~~~~~le~~-l~wiE-------eP~~~~d~~~~~e~~a~lr~~~~ 301 (464)
T 4g8t_A 230 DGFEEAEAVTALAKRFPDARITLDPNGAWSLDEAVKIGKQLKGV-LAYAE-------DPCGAEQGYSGREIMAEFRRATG 301 (464)
T ss_dssp CHHHHHHHHHHHHHHSTTCCEEEECTTCBCHHHHHHHHHHTTTT-CSCEE-------SCBCCBTTBCHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhhCCCceEEEECCCccCHHHHHHHHHHhhhc-cceee-------cCcCcccccchHHHHHhhhccCC
Confidence 4455566778888776 566777777778888899999988765 65553 21 00001123577899999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgV 107 (230)
+||.+.-.+.+..++.++++...+|.+
T Consensus 302 iPIa~gE~~~~~~~~~~~i~~~avdi~ 328 (464)
T 4g8t_A 302 LPTATNMIATDWRQMGHTISLQSVDIP 328 (464)
T ss_dssp CCEEESSSSCSHHHHHHHHHHTCCSEE
T ss_pred CCccccccccchhhHHHHHHhhCCCEE
Confidence 999999999999999999987667744
|
| >3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.16 Score=43.81 Aligned_cols=96 Identities=18% Similarity=0.180 Sum_probs=65.3
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-cccHHHHHHHHhhCCccEEEc---
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLAN--- 86 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ipvi~n--- 86 (230)
++++. .++.||.+|.-..-+.++....++.+.+.|.+.|.+--|+.. +++.. ..|+..|..+++ +++||++.
T Consensus 148 Lr~va-~~gkPVilK~Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~--y~~~~~~vdl~~i~~lk~-~~~PV~~D~sH 223 (298)
T 3fs2_A 148 LIAAA-RTGRVVNVKKGQFLAPWDMKNVLAKITESGNPNVLATERGVS--FGYNTLVSDMRALPIMAG-LGAPVIFDATH 223 (298)
T ss_dssp HHHHH-HTTSEEEEECCTTCCGGGHHHHHHHHHTTTCCCEEEEECCEE--CSSSCEECCTTHHHHHHT-TTSCEEEEHHH
T ss_pred HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCCCccCHHHHHHHHH-cCCcEEEcCCC
Confidence 44554 468999999987656778888888999999877666444332 22322 268899999998 89999983
Q ss_pred ------------CCCCC--HHHHHHHHHhhCCcEEEEeh
Q 026945 87 ------------GNVRH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 ------------GgI~s--~~da~~~l~~~gadgVmigR 111 (230)
||-+. +.-+..+.. .||||++|=+
T Consensus 224 svq~p~~~~~~s~G~r~~v~~~a~AAvA-lGAdGl~IE~ 261 (298)
T 3fs2_A 224 SVQQPGGQGGSTGGQREFVETLARAAVA-VGVAGFFIET 261 (298)
T ss_dssp HTCCCC--------CGGGHHHHHHHHHH-HCCSEEEEEE
T ss_pred ccccCCcccCCCCCchhhHHHHHHHHHH-cCCCEEEEEe
Confidence 23221 223445554 7999999943
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.19 Score=44.23 Aligned_cols=96 Identities=11% Similarity=0.148 Sum_probs=68.8
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
|.|.++ ++++.+ .+.||.+|.-+. +.++....++.+.+.|.+.+.+|+-+... ......|+..|..+++..
T Consensus 135 ~~n~~L----L~~va~-~gkPviLstGma-t~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp--~~~~~~nL~ai~~lk~~f~ 206 (349)
T 2wqp_A 135 CNNYPL----IKLVAS-FGKPIILSTGMN-SIESIKKSVEIIREAGVPYALLHCTNIYP--TPYEDVRLGGMNDLSEAFP 206 (349)
T ss_dssp TTCHHH----HHHHHT-TCSCEEEECTTC-CHHHHHHHHHHHHHHTCCEEEEECCCCSS--CCGGGCCTHHHHHHHHHCT
T ss_pred ccCHHH----HHHHHh-cCCeEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEeccCCCC--CChhhcCHHHHHHHHHHCC
Confidence 345555 444533 589999998885 78888888888999999888889743221 112346899999999998
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
++||..++--....-...+.. .||+
T Consensus 207 ~lpVg~sdHt~G~~~~~AAvA-lGA~ 231 (349)
T 2wqp_A 207 DAIIGLSDHTLDNYACLGAVA-LGGS 231 (349)
T ss_dssp TSEEEEECCSSSSHHHHHHHH-HTCC
T ss_pred CCCEEeCCCCCcHHHHHHHHH-hCCC
Confidence 899987764434555556665 7999
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.07 Score=44.05 Aligned_cols=94 Identities=13% Similarity=0.149 Sum_probs=60.0
Q ss_pred EEEEE-CCCCChHHHHHHHHHHHHcCCCEEEEecCCCC-CcCC-CC---------Cccc----HHHHHHHHhhCCccEEE
Q 026945 22 VSCKI-RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD-EKDG-KK---------FRAD----WNAIKAVKNALRIPVLA 85 (230)
Q Consensus 22 vsvKi-R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~-~~~~-~~---------~~~~----~~~i~~i~~~~~ipvi~ 85 (230)
+..-+ +..++.+++.+.++.+++. +|+|++---... ...+ +. .+.+ .+.++++++.+++||.+
T Consensus 7 ~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~ 85 (248)
T 1geq_A 7 LIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVL 85 (248)
T ss_dssp EEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEE
Confidence 44434 3334557899999999999 999998621111 0000 00 0112 67889999988999887
Q ss_pred cCCCCC------HHHHHHHHHhhCCcEEEEehhhhhCC
Q 026945 86 NGNVRH------MEDVQKCLEETGCEGVLSAESLLENP 117 (230)
Q Consensus 86 nGgI~s------~~da~~~l~~~gadgVmigR~~l~nP 117 (230)
-+.++. .+.+..+++ .|+|+|.++--...++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~Gad~v~~~~~~~~~~ 122 (248)
T 1geq_A 86 MTYYNPIYRAGVRNFLAEAKA-SGVDGILVVDLPVFHA 122 (248)
T ss_dssp EECHHHHHHHCHHHHHHHHHH-HTCCEEEETTCCGGGH
T ss_pred EeccchhhhcCHHHHHHHHHH-CCCCEEEECCCChhhH
Confidence 665543 356666664 8999999985444443
|
| >4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.12 Score=45.69 Aligned_cols=92 Identities=7% Similarity=0.111 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 5 PLVKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+.-.+.++++++++ ++.+.+-..-+|+..++..+++.+++.+. ++ +| +-.+++..+.+++.+++
T Consensus 179 ~~di~~v~~vr~a~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~-~i-------Ee-----P~~~~~~~~~l~~~~~~ 245 (376)
T 4h2h_A 179 EIDIEAIRKVWEAVRGTGIALAADGNRGWTTRDALRFSRECPDIPF-VM-------EQ-----PCNSFEDLEAIRPLCHH 245 (376)
T ss_dssp HHHHHHHHHHHHHHTTSCCEEEEECTTCCCHHHHHHHHHHCTTSCE-EE-------ES-----CSSSHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHhhccCCeeEEEEeeccCCCHHHHHHHHHHHhhccc-cc-------cC-----CcchhhhHhhhhhcccC
Confidence 33345556665543 45666666667777777777777766653 32 22 12357888999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
||.+.=.+.+..++.++++...+|.|.+
T Consensus 246 pia~dE~~~~~~~~~~~~~~~~~d~v~~ 273 (376)
T 4h2h_A 246 ALYMDEDGTSLNTVITAAATSLVDGFGM 273 (376)
T ss_dssp CEEESTTCCSHHHHHHHHHTTCCSEECC
T ss_pred ccccCcccCCHHHHHHHHHhhccCcccc
Confidence 9999888999999999998666887754
|
| >1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A | Back alignment and structure |
|---|
Probab=95.28 E-value=0.12 Score=46.84 Aligned_cols=70 Identities=17% Similarity=0.354 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCC-CCCHHHHHHHHHhhCCc
Q 026945 30 PNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGN-VRHMEDVQKCLEETGCE 105 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGg-I~s~~da~~~l~~~gad 105 (230)
|+.++++++++.+.+ .++.+|. | .. .+-||+..+++++.+ ++||++.-. +.++.++.++++...||
T Consensus 279 ~t~~eai~~~~~l~~~~~i~~iE-------e--Pl-~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d 348 (444)
T 1w6t_A 279 RTSAEQIDYLEELVNKYPIITIE-------D--GM-DENDWDGWKALTERLGKKVQLVGDDFFVTNTDYLARGIQEGAAN 348 (444)
T ss_dssp ECHHHHHHHHHHHHHHSCEEEEE-------S--CS-CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHhCCcEEEE-------C--CC-ChhhHHHHHHHHHhhCCCCeEEeCCcccCCHHHHHHHHHcCCCC
Confidence 677889999999865 8877765 2 12 245899999999988 899998766 89999999999877789
Q ss_pred EEEE
Q 026945 106 GVLS 109 (230)
Q Consensus 106 gVmi 109 (230)
.|.+
T Consensus 349 ~i~i 352 (444)
T 1w6t_A 349 SILI 352 (444)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8877
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=95.25 E-value=0.054 Score=50.37 Aligned_cols=72 Identities=24% Similarity=0.370 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..+-+..|.++|+|.|.|..-. +++ ..-.+.++.+++.. ++|||+ |+|-|.+.+..+++ +|||+|-+|-
T Consensus 280 ~d~~eR~~aLv~AGvD~iviD~ah-----Ghs-~~v~~~i~~ik~~~p~~~via-GNVaT~e~a~~Li~-aGAD~vkVGi 351 (556)
T 4af0_A 280 PGDKDRLKLLAEAGLDVVVLDSSQ-----GNS-VYQIEFIKWIKQTYPKIDVIA-GNVVTREQAAQLIA-AGADGLRIGM 351 (556)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCSC-----CCS-HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred ccHHHHHHHHHhcCCcEEEEeccc-----ccc-HHHHHHHHHHHhhCCcceEEe-ccccCHHHHHHHHH-cCCCEEeecC
Confidence 467888999999999999985422 221 12368889998886 577766 99999999999886 8999998876
Q ss_pred h
Q 026945 112 S 112 (230)
Q Consensus 112 ~ 112 (230)
|
T Consensus 352 G 352 (556)
T 4af0_A 352 G 352 (556)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.16 Score=45.89 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhc---C--CceEEEEE-----------C---CCCChHHHHHHHHH-HHHcCCCEEEEecCCCCCcCCCC
Q 026945 5 PLVKSLVEKLALN---L--NVPVSCKI-----------R---VFPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKK 64 (230)
Q Consensus 5 ~~~~eiv~~v~~~---~--~~pvsvKi-----------R---~g~~~~~~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~ 64 (230)
+.+.-++++++++ . ++.+.+-. + -+|+.++++++++. +++.++.+|. + ..
T Consensus 219 e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IE-------d--Pl- 288 (428)
T 3tqp_A 219 AAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIE-------D--GL- 288 (428)
T ss_dssp HHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEE-------C--CS-
T ss_pred HHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEe-------C--CC-
Confidence 3445568899887 5 45665544 1 24788899999997 8888877775 2 11
Q ss_pred CcccHHHHHHHHhhCCccEEEcCC---CCCHHHHHHHHHhhCCcEEEE
Q 026945 65 FRADWNAIKAVKNALRIPVLANGN---VRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGg---I~s~~da~~~l~~~gadgVmi 109 (230)
.+-||+..+++++.++.||-+.|| ++++.++.+.++...||.|.+
T Consensus 289 ~~dD~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~i 336 (428)
T 3tqp_A 289 SENDWAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILV 336 (428)
T ss_dssp CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred CcccHHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEe
Confidence 245899999999988877655565 359999999998777898876
|
| >3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.15 Score=43.79 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=63.0
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC------CEEE-EecCCCCCcCCCCC-cccHHHHHHHHhhCCcc
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC------SLLA-VHGRTRDEKDGKKF-RADWNAIKAVKNALRIP 82 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~------~~i~-vh~rt~~~~~~~~~-~~~~~~i~~i~~~~~ip 82 (230)
++++. .++.||.+|.-..-+.++....++.+.+.|. +.|. +|..+ . +++.. ..|+..+..+++ .++|
T Consensus 124 Lr~~a-~~gkPVilK~G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~-~--y~~~~~~vdl~~i~~lk~-~~~p 198 (288)
T 3tml_A 124 IHACA-RSGKPVNIKKGQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGV-S--FGYNNLVSDMRSLAIMRE-TNAP 198 (288)
T ss_dssp HHHHH-TSSSCEEEECCTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCE-E--CSSSCEECCHHHHHHGGG-GSSC
T ss_pred HHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCC-C--CCCCcCcCCHHHHHHHHh-cCCc
Confidence 45554 5689999998875566677778888888887 5555 45443 2 22322 258999999988 8999
Q ss_pred EEEc---------------CCCCCH--HHHHHHHHhhCCcEEEEeh
Q 026945 83 VLAN---------------GNVRHM--EDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 83 vi~n---------------GgI~s~--~da~~~l~~~gadgVmigR 111 (230)
|+.. ||-+.. .-+..+.. .||||+||=.
T Consensus 199 V~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA-~GadGl~iE~ 243 (288)
T 3tml_A 199 VVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVA-TGVAGLFMET 243 (288)
T ss_dssp EEEEHHHHTCCCC--------CTTHHHHHHHHHHH-HCCSEEEEEE
T ss_pred EEEcCCcccccCCcccCCCCCchhhHHHHHHHHHH-cCCCEEEEee
Confidence 9883 343332 23445554 7999999943
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.1 Score=44.89 Aligned_cols=87 Identities=18% Similarity=0.301 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+.|-|.+.. ..+..=..+.++.+.+.+ ++||++.-|=.+.+++.+.. ++.|+|
T Consensus 35 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~-~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad 113 (304)
T 3cpr_A 35 DIAAGREVAAYLVDKGLDSLVLAGTTGESP-TTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD 113 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTTT-TSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChh-hCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 556778899999999999999999887642 111111234455555544 48987554434445554333 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
++|+.-..+..|.
T Consensus 114 avlv~~P~y~~~~ 126 (304)
T 3cpr_A 114 GLLVVTPYYSKPS 126 (304)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988776664
|
| >3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.072 Score=47.56 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh---
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--- 78 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--- 78 (230)
++.-.+.++++++++ ++++.+-..-+|+..+++++++.+++.++.+|. | .. +.|++..+++++.
T Consensus 184 ~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~~~A~~~~~~L~~~~l~~iE-------e--P~--~~d~~~~~~l~~~~~~ 252 (392)
T 3v5c_A 184 TKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNLYWLE-------A--AF--HEDEALYEDLKEWLGQ 252 (392)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCCCEEE-------C--SS--SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcEEeeCCCCcCHHHHHHHHHhcccCCCeEEe-------C--CC--CcCHHHHHHHHHhhcc
Confidence 455667788888864 577888888888888899999999988888876 2 12 2377888888875
Q ss_pred --CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 --LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 --~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.++||.+.=.+. ..++.++++...+|.|.+
T Consensus 253 ~~~~ipIa~gE~~~-~~~~~~li~~~a~dii~~ 284 (392)
T 3v5c_A 253 RGQNVLIADGEGLA-SPHLIEWATRGRVDVLQY 284 (392)
T ss_dssp HTCCCEEEECCSSC-CTTHHHHHHTTSCCEECC
T ss_pred CCCCCcEECCCccc-HHHHHHHHHcCCCcEEEe
Confidence 578887766777 788999998666887754
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.094 Score=45.11 Aligned_cols=87 Identities=20% Similarity=0.316 Sum_probs=57.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.+.+++.+.. ++.|+|
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 109 (301)
T 1xky_A 31 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPT-LTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 109 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 4566788999999999999999998776421 11111234455555544 58988554433444444333 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 110 avlv~~P~y~~~s 122 (301)
T 1xky_A 110 AVMLVAPYYNKPS 122 (301)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988776664
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.097 Score=44.93 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+|
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 26 HYEQLRDLIDWHIENGTDGIVAVGTTGESAT-LSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccc-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 5567788999999999999999998776421 11111223455555544 58998654444555554433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 105 avlv~~P~y~~~~ 117 (297)
T 3flu_A 105 YTLSVVPYYNKPS 117 (297)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999987777664
|
| >2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ... | Back alignment and structure |
|---|
Probab=95.07 E-value=0.14 Score=43.54 Aligned_cols=96 Identities=21% Similarity=0.303 Sum_probs=63.6
Q ss_pred HHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-CcccHHHHHHHHhhCCccEEEc--
Q 026945 10 LVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-FRADWNAIKAVKNALRIPVLAN-- 86 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~~~~~~~i~~i~~~~~ipvi~n-- 86 (230)
+++++. .++.||.+|.-..-+.++....+..+...|...+++.-|+.. ++|. ...|...+..+++. + ||+..
T Consensus 110 ll~~~a-~~~~PV~lK~G~~~t~~e~~~Av~~i~~~GN~~i~L~~rG~~--~~y~~~~~dl~~i~~lk~~-~-pVivD~s 184 (267)
T 2nwr_A 110 LLLAAA-KTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERGTT--FGYNNLVVDFRSLPIMKQW-A-KVIYDAT 184 (267)
T ss_dssp HHHHHH-TTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECCEE--CSSSCEECCTTHHHHHTTT-S-EEEEETT
T ss_pred HHHHHH-cCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--CCCCccccCHHHHHHHHHc-C-CEEEcCC
Confidence 456663 579999999987556677778888899999866666555432 2231 12578888888886 6 99873
Q ss_pred -------------CCCCC--HHHHHHHHHhhCCcEEEEeh
Q 026945 87 -------------GNVRH--MEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 -------------GgI~s--~~da~~~l~~~gadgVmigR 111 (230)
+|-+. ..-+.... ..|+||+||=+
T Consensus 185 H~~q~p~G~s~hs~g~~~~~~~ia~aav-a~Ga~G~mIE~ 223 (267)
T 2nwr_A 185 HSVQLPGGLGDKSGGMREFIFPLIRAAV-AVGCDGVFMET 223 (267)
T ss_dssp GGGCCTTC------CCGGGHHHHHHHHH-HHCCSEEEEEE
T ss_pred cccccCCCcCcCCCCchhHHHHHHHHHH-HcCCCEEEEEe
Confidence 22111 22334444 48999999955
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.13 Score=44.56 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=64.5
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ .+||.+-+- . +..+++++++.++++|+|++-+..-... ..+..--+++.+.|.+++++||+
T Consensus 68 ~~v~~~~v~~~~grvpViaGvg-~-~t~~ai~la~~A~~~Gadavlv~~P~y~---~~s~~~l~~~f~~va~a~~lPiil 142 (316)
T 3e96_A 68 KEEVRRTVEYVHGRALVVAGIG-Y-ATSTAIELGNAAKAAGADAVMIHMPIHP---YVTAGGVYAYFRDIIEALDFPSLV 142 (316)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEC-S-SHHHHHHHHHHHHHHTCSEEEECCCCCS---CCCHHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEEeC-c-CHHHHHHHHHHHHhcCCCEEEEcCCCCC---CCCHHHHHHHHHHHHHhCCCCEEE
Confidence 45566655544 589999885 3 7789999999999999999998643221 01111235677888888899986
Q ss_pred Ec-CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 143 Yn~g~~l~~~~~~~La~~pnIvgi 166 (316)
T 3e96_A 143 YFKDPEISDRVLVDLAPLQNLVGV 166 (316)
T ss_dssp EECCTTSCTHHHHHHTTCTTEEEE
T ss_pred EeCCCCCCHHHHHHHHcCCCEEEE
Confidence 66 655677777776543344444
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.04 E-value=0.39 Score=42.00 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=52.5
Q ss_pred HHHHHHHH--HHcCCCEEEEec-CCCCCcCC-------CCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHHH---
Q 026945 35 TIKYAKML--EDAGCSLLAVHG-RTRDEKDG-------KKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCLE--- 100 (230)
Q Consensus 35 ~~~~a~~l--~~~G~~~i~vh~-rt~~~~~~-------~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l~--- 100 (230)
....++.+ .+.|+|.+-+-- .+..-..+ |+..-..+.++++.+.+++|++ .+||+ +.+++.+.++
T Consensus 190 V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG~-~~~~fl~~v~~A~ 268 (332)
T 3iv3_A 190 VNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAGV-SAELFQETLVFAH 268 (332)
T ss_dssp HHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTTC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCCC-CHHHHHHHHHHHH
Confidence 55667777 567999998742 11110001 1111112446777788899965 79998 6777776664
Q ss_pred hhCC--cEEEEehhhhhC
Q 026945 101 ETGC--EGVLSAESLLEN 116 (230)
Q Consensus 101 ~~ga--dgVmigR~~l~n 116 (230)
+.|+ .||.+||....+
T Consensus 269 ~aGa~f~Gv~~GRnvwq~ 286 (332)
T 3iv3_A 269 KAGAKFNGVLCGRATWAG 286 (332)
T ss_dssp HHTCCCCEEEECHHHHTT
T ss_pred HcCCCcceEEeeHHHHHh
Confidence 3799 999999988776
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.08 Score=43.87 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=34.7
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
++++++.|+|++.+++..+.. .|+||+.||++++.-+++..
T Consensus 173 ~~~ilyggsV~~~n~~~~~~~-~giDG~LVG~a~l~a~~~~~ 213 (226)
T 1w0m_A 173 EVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDPYA 213 (226)
T ss_dssp TSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHHH
T ss_pred CCEEEEeCCCCcHHHHHHHHh-CCCCEEEECHHHHCCcCHHH
Confidence 589999999999999887664 89999999999998766443
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.096 Score=45.15 Aligned_cols=87 Identities=22% Similarity=0.336 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+|
T Consensus 34 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~-Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 34 DTATAARLANHLVDQGCDGLVVSGTTGESPT-TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999998776421 11111234455555544 58998654444555555433 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 113 avlv~~P~y~~~s 125 (304)
T 3l21_A 113 GLLVVTPYYSKPP 125 (304)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999987776663
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.094 Score=44.84 Aligned_cols=87 Identities=15% Similarity=0.275 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3tak_A 20 DWKSLEKLVEWHIEQGTNSIVAVGTTGEAST-LSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD 98 (291)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcccccccc-CCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 5567888999999999999999997776421 11111223455555544 58998654444555555433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 99 avlv~~P~y~~~~ 111 (291)
T 3tak_A 99 AALLVTPYYNKPT 111 (291)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988777664
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.12 Score=44.46 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCCCEEEEecCCC-CCc--CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTR-DEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~-~~~--~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
..++++.++++|++.|.+..... ... .+.....+.+.++++++.+++||+++-.+...+++..+++ .|||+|. +.
T Consensus 30 ~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~~~~~~~~~a-~GAd~V~-~~ 107 (305)
T 2nv1_A 30 NAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEA-MGVDYID-ES 107 (305)
T ss_dssp SHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTCHHHHHHHHH-HTCSEEE-EC
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccchHHHHHHHH-CCCCEEE-Ee
Confidence 45789999999999996543100 000 1111123678999999999999996433433666666665 8999996 65
Q ss_pred hhhh
Q 026945 112 SLLE 115 (230)
Q Consensus 112 ~~l~ 115 (230)
..+.
T Consensus 108 ~~l~ 111 (305)
T 2nv1_A 108 EVLT 111 (305)
T ss_dssp TTSC
T ss_pred ccCC
Confidence 5553
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.095 Score=44.85 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHH---hhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~---~~gad 105 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.|.+++.+..+ ..|+|
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESAT-LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence 5566788999999999999999998776421 11111234455555543 589985544445555554443 47999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
++|+.-..+..|.
T Consensus 99 avlv~~P~y~~~s 111 (292)
T 2ojp_A 99 GCLTVTPYYNRPS 111 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988776664
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.59 Score=40.03 Aligned_cols=120 Identities=16% Similarity=0.182 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC-----cccH-H---HHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-----RADW-N---AIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~-----~~~~-~---~i~ 73 (230)
.+-+...++.|...+++||.+-+-.|+ +..+..+.++.+.++|+..|.+-+.....+.+..+ -... + .|+
T Consensus 60 ~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~ 139 (290)
T 2hjp_A 60 MSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIA 139 (290)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHH
Confidence 456677888888889999999998875 55678899999999999999998875432222211 1122 3 344
Q ss_pred HHHhhC-CccEEEcC--CCC----CHHHHH---HHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 74 AVKNAL-RIPVLANG--NVR----HMEDVQ---KCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 74 ~i~~~~-~ipvi~nG--gI~----s~~da~---~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
.+++.. ..++..+| |-. ..+++. +.+.+.|||+|++= +-+.++..++++.
T Consensus 140 Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e-~~~~~~~~~~~i~ 199 (290)
T 2hjp_A 140 AATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIH-SRQKTPDEILAFV 199 (290)
T ss_dssp HHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEEC-CCCSSSHHHHHHH
T ss_pred HHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeC-CCCCCHHHHHHHH
Confidence 444442 23344444 332 135544 23445899999872 1134445555443
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.24 Score=43.69 Aligned_cols=97 Identities=10% Similarity=0.052 Sum_probs=61.3
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHH---HcCCCEEEEecCCCCCcCC--C--CCcccHHHHHHHHhhCCccE
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLE---DAGCSLLAVHGRTRDEKDG--K--KFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~---~~G~~~i~vh~rt~~~~~~--~--~~~~~~~~i~~i~~~~~ipv 83 (230)
+..+++..+.||.+-+ .|.+.++..+.++.++ +.|+|+|.|.--......+ . .+..-.+.++.+++.+++||
T Consensus 118 l~~~~~~~~~pvivsI-~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV 196 (354)
T 4ef8_A 118 AAEQHDYGKKPLFLSM-SGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSF 196 (354)
T ss_dssp HHHTCCTTTCCEEEEE-CCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCE
T ss_pred HHHHhhcCCCcEEEEe-ccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCe
Confidence 3333333478888776 3567788999999998 6899999986432221111 1 11122466777888889998
Q ss_pred EE--cCCCCCHHHHH---HHHHhhC-CcEEEE
Q 026945 84 LA--NGNVRHMEDVQ---KCLEETG-CEGVLS 109 (230)
Q Consensus 84 i~--nGgI~s~~da~---~~l~~~g-adgVmi 109 (230)
++ .-++ +.+++. +.+++.| +|+|.+
T Consensus 197 ~vKi~p~~-d~~~~~~~a~~~~~~Gg~d~I~~ 227 (354)
T 4ef8_A 197 GVKMPPYF-DFAHFDAAAEILNEFPKVQFITC 227 (354)
T ss_dssp EEEECCCC-SHHHHHHHHHHHHTCTTEEEEEE
T ss_pred EEEecCCC-CHHHHHHHHHHHHhCCCccEEEE
Confidence 73 3444 455444 4444677 999975
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=94.94 E-value=0.1 Score=44.93 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++. |+. +.+++.+.. ++.|+
T Consensus 30 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~v~~~~~~~~~grvpViaGvg~~-~t~~ai~la~~A~~~Ga 107 (303)
T 2wkj_A 30 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFV-QSLSEREQVLEIVAEEAKGKIKLIAHVGCV-STAESQQLAASAKRYGF 107 (303)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCS-SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCC-CHHHHHHHHHHHHhCCC
Confidence 5566788999999999999999998776421 11111234455555544 5899854 554 444444333 45799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|++|+.-..+..|.
T Consensus 108 davlv~~P~y~~~s 121 (303)
T 2wkj_A 108 DAVSAVTPFYYPFS 121 (303)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEecCCCCCCCC
Confidence 99999988776664
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.1 Score=44.64 Aligned_cols=84 Identities=15% Similarity=0.147 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++. |+. +.+++.+.. ++.|+
T Consensus 22 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~-~t~~ai~la~~A~~~Ga 99 (294)
T 3b4u_A 22 DIDAMIAHARRCLSNGCDSVTLFGTTGEGCS-VGSRERQAILSSFIAAGIAPSRIVTGVLVD-SIEDAADQSAEALNAGA 99 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHTTCCGGGEEEEECCS-SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCc-cHHHHHHHHHHHHhcCC
Confidence 5567889999999999999999998776421 11111234455556555 4898755 554 445554333 34799
Q ss_pred cEEEEehhhhhC
Q 026945 105 EGVLSAESLLEN 116 (230)
Q Consensus 105 dgVmigR~~l~n 116 (230)
|+||+.-..+..
T Consensus 100 davlv~~P~y~~ 111 (294)
T 3b4u_A 100 RNILLAPPSYFK 111 (294)
T ss_dssp SEEEECCCCSSC
T ss_pred CEEEEcCCcCCC
Confidence 999998877766
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.09 Score=45.03 Aligned_cols=87 Identities=16% Similarity=0.250 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.|.+++.+.. ++.|+|
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 99 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPT-LTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccccc-CCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999987766321 11111224455555543 58998765545556655433 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 100 avlv~~P~y~~~~ 112 (292)
T 3daq_A 100 AIMLITPYYNKTN 112 (292)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999887776654
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.11 Score=44.33 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
.|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.+.+++.+.. ++.|+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Ga 96 (289)
T 2yxg_A 18 VDFDGLEENINFLIENGVSGIVAVGTTGESPT-LSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGA 96 (289)
T ss_dssp ECHHHHHHHHHHHHHTTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 36677889999999999999999998776421 11111234455555544 48987553333444444333 45799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|++|+.-..+..|.
T Consensus 97 davlv~~P~y~~~s 110 (289)
T 2yxg_A 97 DAVLSITPYYNKPT 110 (289)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776664
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.096 Score=45.03 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC---CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL---RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~---~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+
T Consensus 26 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 26 DEQSYARLIKRQIENGIDAVVPVGTTGESAT-LTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECSSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 5677888999999999999999997776421 11111223455555543 58998654444555555433 34899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 105 davlv~~P~y~~~s 118 (301)
T 3m5v_A 105 DGILSVAPYYNKPT 118 (301)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988777664
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=94.86 E-value=0.085 Score=45.72 Aligned_cols=87 Identities=16% Similarity=0.289 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.|.+++.+.. ++.|+|
T Consensus 42 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 42 DWDSLAKLVDFHLQEGTNAIVAVGTTGESAT-LDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSGGGTGGG-CCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 4566788999999999999999987766321 11111123445455544 58998654444555555433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 121 avlv~~P~y~~~s 133 (314)
T 3qze_A 121 ACLLVTPYYNKPT 133 (314)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988777664
|
| >3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.22 Score=45.28 Aligned_cols=93 Identities=9% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc----HHHHHHHHhhCC
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALR 80 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ 80 (230)
.-.+.+++++++. ++++.+-..-+|+..+++.+++.+++. +.+|. | .. .+-| ++..+++++.++
T Consensus 213 ~Di~~v~avRea~pd~~L~vDaN~~w~~~~A~~~~~~L~~~-i~~iE-------e--P~-~~~d~~~~~~~~~~l~~~~~ 281 (450)
T 3mzn_A 213 EEADCIRALHEAFPEARLALDPNGAWKLDEAVRVLEPIKHL-LSYAE-------D--PC-GQEGGFSGRETMAEFKKRTG 281 (450)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECTTCBCHHHHHHHHGGGGGG-CSEEE-------S--SB-CCBTTBCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhc-cceee-------C--CC-CcccccchHHHHHHHHHhcC
Confidence 3344555555543 344555555556666666666666665 55543 1 11 1223 688899999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.++=.+.+..++.++++...+|.+.+
T Consensus 282 iPIa~dE~~~~~~~~~~~i~~~a~di~~~ 310 (450)
T 3mzn_A 282 LPTATNMIATDYKQLQYAVQLNSVDIPLA 310 (450)
T ss_dssp CCEEESSSSSSHHHHHHHHHHTCCSEEBC
T ss_pred CCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 99998767889999999998767886643
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.11 Score=44.52 Aligned_cols=88 Identities=18% Similarity=0.251 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
.|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.|.+++.+.. ++.|+
T Consensus 18 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Ga 96 (294)
T 2ehh_A 18 VDYEALGNLIEFHVDNGTDAILVCGTTGESPT-LTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGA 96 (294)
T ss_dssp ECHHHHHHHHHHHHTTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 36677889999999999999999998776421 11111234455555544 48988554434445554333 35899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 97 davlv~~P~y~~~s 110 (294)
T 2ehh_A 97 DGALVVVPYYNKPT 110 (294)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776664
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.09 Score=45.60 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.|.+++.+.. ++.|+|
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPT-LTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccc-cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 5567888999999999999999997776421 11111223455555543 58988654444555555433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 120 avlv~~P~y~~~~ 132 (315)
T 3si9_A 120 AVLVVTPYYNRPN 132 (315)
T ss_dssp EEEEECCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999987776663
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.21 Score=43.19 Aligned_cols=95 Identities=13% Similarity=0.144 Sum_probs=63.7
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-. +..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 67 r~~vi~~~~~~~~grvpViaGvg~--st~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 141 (314)
T 3d0c_A 67 AKQVATRVTELVNGRATVVAGIGY--SVDTAIELGKSAIDSGADCVMIHQPVHPY---ITDAGAVEYYRNIIEALDAPSI 141 (314)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEECS--SHHHHHHHHHHHHHTTCSEEEECCCCCSC---CCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEecCCc--CHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345566665543 5899988864 66889999999999999999887643211 0111135677888999999986
Q ss_pred E-c--CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 A-N--GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~-n--GgI~s~~da~~~l~~~gadgV 107 (230)
. | |- -+++.+.++.+...+-||
T Consensus 142 lYn~tg~-l~~~~~~~La~~pnIvgi 166 (314)
T 3d0c_A 142 IYFKDAH-LSDDVIKELAPLDKLVGI 166 (314)
T ss_dssp EEECCTT-SCTHHHHHHTTCTTEEEE
T ss_pred EEeCCCC-cCHHHHHHHHcCCCEEEE
Confidence 4 4 44 577777776543334344
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.051 Score=45.88 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEECCC-----CC-----hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 4 LPLVKSLVEKLALNL---NVPVSCKIRVF-----PN-----LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---~~pvsvKiR~g-----~~-----~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
++...+.|++++++. ++|+.|--|.. .+ .+++++=++.++++|++.|.+++. .+.+
T Consensus 126 ~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~-----------~~~~ 194 (255)
T 2qiw_A 126 AQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL-----------STAE 194 (255)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC-----------CSHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC-----------CCHH
Confidence 455667777776652 67865555543 21 467888889999999999999763 2347
Q ss_pred HHHHHHhhCCccEEEc--CCC----CCHHHHHHHHHhhCCcEEEEehh
Q 026945 71 AIKAVKNALRIPVLAN--GNV----RHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~n--GgI----~s~~da~~~l~~~gadgVmigR~ 112 (230)
.++++.+.+++|+-.+ ++- .|.+ -|++.|+..|..|-.
T Consensus 195 ~~~~i~~~~~~P~n~~~~~~~~~p~~~~~----eL~~lGv~~v~~~~~ 238 (255)
T 2qiw_A 195 QVERLVDAVSVPVNITAHPVDGHGAGDLA----TLAGLGVRRVTFGPL 238 (255)
T ss_dssp HHHHHHTTCSSCBEEECBTTTBBTTBCHH----HHHHTTCCEEECTTH
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCCCCHH----HHHHcCCCEEEEHHH
Confidence 8899999999998766 333 2333 344589999988765
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.38 Score=41.23 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CC-C-C--------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VF-P-N--------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~--------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
.+...++++.... .++.|-.-+- +| . | ..+..+..+-+++.|+|.|.+.-.|.-..+...+..|++.+
T Consensus 120 i~~Tk~vv~~ah~-~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L 198 (288)
T 3q94_A 120 VETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEM 198 (288)
T ss_dssp HHHHHHHHHHHHT-TTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSCCSSSCCCCHHHH
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCCcCCCCccCHHHH
Confidence 3455566655543 4666666552 32 1 1 12234555556678999998865554433222346799999
Q ss_pred HHHHhhCCccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhh
Q 026945 73 KAVKNALRIPVLANGNVRH-MEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~ 113 (230)
++|++.+++|++.-||=.+ .+++.++++ .|+.-|=|++.+
T Consensus 199 ~~I~~~v~vpLVlHGgSG~~~e~i~~ai~-~Gv~KiNi~Tdl 239 (288)
T 3q94_A 199 EQVRDFTGVPLVLHGGTGIPTADIEKAIS-LGTSKINVNTEN 239 (288)
T ss_dssp HHHHHHHCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred HHHHHhcCCCEEEeCCCCCCHHHHHHHHH-cCCeEEEEChHH
Confidence 9999999999999987544 566777776 788888776644
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.1 Score=44.58 Aligned_cols=88 Identities=17% Similarity=0.216 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
.|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.+.+++.+.. ++.|+
T Consensus 19 iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga 97 (291)
T 3a5f_A 19 VDFDKLSELIEWHIKSKTDAIIVCGTTGEATT-MTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV 97 (291)
T ss_dssp BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC
Confidence 45566788999999999999999997766321 11111234455555543 48988554444555554333 35799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|++|+.-..+..|.
T Consensus 98 davlv~~P~y~~~s 111 (291)
T 3a5f_A 98 DGLLVITPYYNKTT 111 (291)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988776664
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.12 Score=44.48 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=56.3
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--CCccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipvi~ 85 (230)
+-++++++.. ..||.|-+. +.++ ++.+.++|+|.|-+...+ .+.++++.+. -++++.+
T Consensus 198 ~Av~~~r~~~p~~~ieVEvd---tlde----~~eAl~aGaD~I~LDn~~------------~~~l~~av~~i~~~v~iea 258 (298)
T 3gnn_A 198 EALDAAFALNAEVPVQIEVE---TLDQ----LRTALAHGARSVLLDNFT------------LDMMRDAVRVTEGRAVLEV 258 (298)
T ss_dssp HHHHHHHHHC--CCCEEEES---SHHH----HHHHHHTTCEEEEEESCC------------HHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhCCCCCEEEEeC---CHHH----HHHHHHcCCCEEEECCCC------------HHHHHHHHHHhCCCCeEEE
Confidence 4445555443 244444443 2232 455556899999986632 2444444333 2689999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| +++.+.++.+ +|+|++.+|.....-|++
T Consensus 259 SGGI-~~~~i~~~a~-tGVD~isvG~lt~sa~~l 290 (298)
T 3gnn_A 259 SGGV-NFDTVRAIAE-TGVDRISIGALTKDVRAT 290 (298)
T ss_dssp ESSC-STTTHHHHHH-TTCSEEECGGGGTSCCCC
T ss_pred EcCC-CHHHHHHHHH-cCCCEEEECCeecCCCcc
Confidence 9999 6788887775 999999999855544543
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.17 Score=41.93 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=64.5
Q ss_pred HHHHHhhcCCceEEEEECCCC--C--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 10 LVEKLALNLNVPVSCKIRVFP--N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g~--~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.++.+++..++||.=-+|+.. + .++...+...+....+|++-+-.. .|.....||+.++.+.. +.|++.
T Consensus 106 ~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~-----GGtG~~fDW~~~~~~~~--~~p~iL 178 (228)
T 4aaj_A 106 TIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTG-----AGSGKLHDLRVSSLVAR--KIPVIV 178 (228)
T ss_dssp HHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC------------CCCHHHHHHHH--HSCEEE
T ss_pred HHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCC-----CCCcCcCChHHHHHhhh--cCCeEE
Confidence 345555556777754456532 1 123444555666778999888642 12222469999888765 479999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.||+ +++.+.++++..+..||=+..|.-
T Consensus 179 AGGL-~peNV~~Ai~~~~P~gVDVsSGVE 206 (228)
T 4aaj_A 179 AGGL-NAENVEEVIKVVKPYGVDVSSGVE 206 (228)
T ss_dssp ESSC-CTTTHHHHHHHHCCSEEEESGGGE
T ss_pred ECCC-CHHHHHHHHHHhCCCEEEeCCCCC
Confidence 9999 688999999888899998888775
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.11 Score=44.56 Aligned_cols=87 Identities=13% Similarity=0.079 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+ .|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-|=.+.+++.+.. +..|+
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 100 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFM-LSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 55667889999999 99999999997766321 11111234455555544 58998554444445554333 34799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 101 davlv~~P~y~~~~ 114 (293)
T 1f6k_A 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776664
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.32 Score=41.64 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC--ccc----HHHHHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF--RAD----WNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~--~~~----~~~i~~i~ 76 (230)
.+-+...++.|...+++||.+-+-.|+ +..+..+.++.+.++|++.|.+-+.....+++..+ -.+ .+.|+.++
T Consensus 67 ~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~ 146 (287)
T 3b8i_A 67 LSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAAL 146 (287)
T ss_dssp HHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHH
Confidence 456677788888889999999998774 56678899999999999999998875432222211 112 23444444
Q ss_pred hhC-CccEEEcC--CC--CCHHHHH---HHHHhhCCcEEEEehhhhhCCccccch
Q 026945 77 NAL-RIPVLANG--NV--RHMEDVQ---KCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 77 ~~~-~ipvi~nG--gI--~s~~da~---~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+.- +.++..+| |- ...+++. +.+.+.|||+|++= .+.++..+.++
T Consensus 147 ~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e--~~~~~~~~~~i 199 (287)
T 3b8i_A 147 EARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLV--GVRDFAHLEAI 199 (287)
T ss_dssp HHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEE--CCCSHHHHHHH
T ss_pred HcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEec--CCCCHHHHHHH
Confidence 442 23344444 22 1123333 23345899999883 24444445444
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.54 Score=40.84 Aligned_cols=118 Identities=12% Similarity=0.061 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC---cc----cHHHHHH
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---RA----DWNAIKA 74 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~---~~----~~~~i~~ 74 (230)
.+-+...++.|...+ ++||.+-+-.|+ +..+..+.++.+.++|+..|.+-+.....+.+..+ -. ..+.|+.
T Consensus 85 ~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~A 164 (318)
T 1zlp_A 85 TTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAA 164 (318)
T ss_dssp HHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHH
Confidence 456677788888888 999999998875 55678899999999999999998865432222221 11 1233444
Q ss_pred HHhhC-CccEEEcCCCCCHH-----HHH---HHHHhhCCcEEEEehhhhhCCccccch
Q 026945 75 VKNAL-RIPVLANGNVRHME-----DVQ---KCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 75 i~~~~-~ipvi~nGgI~s~~-----da~---~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
+++.. ..++..+|...... ++. +.+.+.|||+|++= .+.++..++++
T Consensus 165 a~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e--~~~~~e~~~~i 220 (318)
T 1zlp_A 165 AREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVE--APANVDELKEV 220 (318)
T ss_dssp HHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEEC--CCCSHHHHHHH
T ss_pred HHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEc--CCCCHHHHHHH
Confidence 44432 34455555443321 222 23345899999882 23444444444
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.12 Score=45.36 Aligned_cols=87 Identities=14% Similarity=0.147 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++|||+.-+=.+.+++.+.. ++.|||
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQ-LGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 5566789999999999999999998776421 11111234455555544 58998654434555554433 347999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 129 avlv~~P~Y~~~s 141 (343)
T 2v9d_A 129 GIVVINPYYWKVS 141 (343)
T ss_dssp EEEEECCSSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988776664
|
| >2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=44.84 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
-.+.++++++.+ ++.+.+-..-+|+.+++ ++++.+++.++.+|. | .. .+.|++..++ +.+++||.+
T Consensus 153 d~~~v~avr~~~~~~~l~vDaN~~~~~~~A-~~~~~l~~~~i~~iE-------q--P~-~~~d~~~~~~--~~~~ipIa~ 219 (342)
T 2okt_A 153 IMHQIRVLRELDFHFQLVIDANESLDRQDF-TQLQLLAREQVLYIE-------E--PF-KDISMLDEVA--DGTIPPIAL 219 (342)
T ss_dssp HHHHHHHHTTSSSCCEEEEECTTCCCGGGH-HHHHHHGGGCEEEEE-------C--CC-SSGGGGGGSC--TTSSCCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHH-HHHHHHhhCCCcEEE-------C--CC-CCccHHHHHH--hcCCCCEEe
Confidence 457788888876 45666766778998999 999999999888876 2 11 1234554444 557899999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.=.+.+..++.++++...+|.|.+
T Consensus 220 dEs~~~~~~~~~~i~~~a~d~i~~ 243 (342)
T 2okt_A 220 DEKATSLLDIINLIELYNVKVVVL 243 (342)
T ss_dssp STTCCCHHHHHHHHHHSCCCEEEE
T ss_pred cCCCCCHHHHHHHHHhCCCCEEEE
Confidence 889999999999998778898877
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.11 Score=45.45 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=56.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHHH---HHhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKC---LEETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~~---l~~~ga 104 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++|||+. |+.. .+++.+. .++.|+
T Consensus 53 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~vi~~~ve~~~grvpViaGvg~~s-t~eai~la~~A~~~Ga 130 (332)
T 2r8w_A 53 DIEAFSALIARLDAAEVDSVGILGSTGIYMY-LTREERRRAIEAAATILRGRRTLMAGIGALR-TDEAVALAKDAEAAGA 130 (332)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEEECCSS-HHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCC-HHHHHHHHHHHHhcCC
Confidence 4566788999999999999999998776421 11111234455555544 4999854 5554 4444433 335799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 131 davlv~~P~Y~~~s 144 (332)
T 2r8w_A 131 DALLLAPVSYTPLT 144 (332)
T ss_dssp SEEEECCCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776654
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.11 Score=44.76 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
.|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.=|=.|.+++.+.. ++.||
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Ga 108 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIVLGTTGESPT-VNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGA 108 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-CCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCC
Confidence 36677889999999999999999997766321 11111224455555544 58988554434445554333 34799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|++|+.-..+..|.
T Consensus 109 davlv~~P~y~~~s 122 (306)
T 1o5k_A 109 NGVLVVTPYYNKPT 122 (306)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776664
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.12 Score=41.73 Aligned_cols=82 Identities=5% Similarity=0.009 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec--CCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHG--RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~--rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|..+..+.++.+.+.|++++++-- .+.... . ....+.++++++.++.|+.+-+.++++++..+.+...|+|+|.
T Consensus 14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~--~--~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~ 89 (220)
T 2fli_A 14 DYANFASELARIEETDAEYVHIDIMDGQFVPN--I--SFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 89 (220)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSC--B--CBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeecCCCCCc--c--ccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEE
Confidence 556778889999999999977652 111110 0 2237899999998888999988888876544555568999998
Q ss_pred EehhhhhC
Q 026945 109 SAESLLEN 116 (230)
Q Consensus 109 igR~~l~n 116 (230)
+.-.....
T Consensus 90 vh~~~~~~ 97 (220)
T 2fli_A 90 IHTESTRH 97 (220)
T ss_dssp EEGGGCSC
T ss_pred EccCcccc
Confidence 86544433
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.21 Score=40.82 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHH---H------HHHHHHhhC
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME---D------VQKCLEETG 103 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~---d------a~~~l~~~g 103 (230)
+.....++. .+.|++ +.+++ +.++.+++.++.| +..|||+-.. | ..+ ++ .|
T Consensus 126 ~~v~~~a~~-~e~G~d-vV~~~---------------~~~~~ir~~~~~~-~v~pGI~~~~~~~dq~rv~t~~~-i~-aG 185 (213)
T 1vqt_A 126 DYMDRIEKL-NKLGCD-FVLPG---------------PWAKALREKIKGK-ILVPGIRMEVKADDQKDVVTLEE-MK-GI 185 (213)
T ss_dssp HHHHHHHHH-HHHTCE-EECCH---------------HHHHHHTTTCCSC-EEECCBC---------CCBCHHH-HT-TT
T ss_pred HHHHHHHHH-hcCCCE-EEEcH---------------HHHHHHHHHCCCC-EEECCCCCCCCccchhhcCCHHH-HH-CC
Confidence 455677888 899998 44211 4567777777778 7778886432 1 456 64 89
Q ss_pred CcEEEEehhhhhCCc
Q 026945 104 CEGVLSAESLLENPA 118 (230)
Q Consensus 104 adgVmigR~~l~nP~ 118 (230)
+|++.+||+++..++
T Consensus 186 ad~iVvGR~I~~a~d 200 (213)
T 1vqt_A 186 ANFAVLGREIYLSEN 200 (213)
T ss_dssp CSEEEESHHHHTSSC
T ss_pred CCEEEEChhhcCCCC
Confidence 999999999987665
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.4 Score=40.91 Aligned_cols=97 Identities=19% Similarity=0.278 Sum_probs=65.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 55 r~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPii 130 (292)
T 2vc6_A 55 HEQVVEITIKTANGRVPVIAGAGS-NSTAEAIAFVRHAQNAGADGVLIVSPYYNK---PTQEGIYQHFKAIDAASTIPII 130 (292)
T ss_dssp HHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345666665543 5888877643 356889999999999999999887643221 0111224567788899999987
Q ss_pred E------cCCCCCHHHHHHHHH-hhCCcEE
Q 026945 85 A------NGNVRHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~------nGgI~s~~da~~~l~-~~gadgV 107 (230)
. +|---+++.+.++.+ ...+-||
T Consensus 131 lYn~P~~tg~~l~~~~~~~La~~~pnIvgi 160 (292)
T 2vc6_A 131 VYNIPGRSAIEIHVETLARIFEDCPNVKGV 160 (292)
T ss_dssp EEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EEeCccccCcCCCHHHHHHHHhhCCCEEEE
Confidence 6 454457888887765 3444444
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.13 Score=43.35 Aligned_cols=117 Identities=20% Similarity=0.252 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-cCCCCCcccHHHHHHHHhh---C
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-KDGKKFRADWNAIKAVKNA---L 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-~~~~~~~~~~~~i~~i~~~---~ 79 (230)
.+.+...++.|...+++||.+-+-.|+.... .+.++.+.++|++.|.+-+..... +.-.+..-..+.|+.+++. .
T Consensus 65 ~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~-~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~ 143 (255)
T 2qiw_A 65 FADYMAVVKKITSAVSIPVSVDVESGYGLSP-ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVA 143 (255)
T ss_dssp HHHHHHHHHHHHHHCSSCEEEECTTCTTCCH-HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEeccCCCcCcHH-HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 4556677788888889999999988853222 888899999999999997653110 0000001113445555444 3
Q ss_pred CccEEEcCCCCC-----------HHHHH---HHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRH-----------MEDVQ---KCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s-----------~~da~---~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++|+..+|-... .+++. +.+++.|||+|++ . .+.++...+++
T Consensus 144 g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~-e-~~~~~~~~~~i 199 (255)
T 2qiw_A 144 GVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYP-V-GLSTAEQVERL 199 (255)
T ss_dssp TCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEE-C-CCCSHHHHHHH
T ss_pred CCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEE-c-CCCCHHHHHHH
Confidence 688666664432 33333 2344589999988 2 23333444443
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.1 Score=44.78 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|=.|.+++.+.. ++.|+|
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPT-LTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD 97 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhh-CCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Confidence 5567788999999999999999887766321 11111234455555543 48987553433444444333 357999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
++|+.-..+..|.
T Consensus 98 avlv~~P~y~~~s 110 (297)
T 2rfg_A 98 AVLCVAGYYNRPS 110 (297)
T ss_dssp EEEECCCTTTCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988776664
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.38 Score=41.63 Aligned_cols=101 Identities=15% Similarity=0.171 Sum_probs=60.3
Q ss_pred HHHHHHHhhc-CCceEEEEECCCCC------hHHHHHHHHHHHHcCCCEEEEecCCCCCc---CCCCCcccHHHHHHHHh
Q 026945 8 KSLVEKLALN-LNVPVSCKIRVFPN------LQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKN 77 (230)
Q Consensus 8 ~eiv~~v~~~-~~~pvsvKiR~g~~------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~~~~~~~~i~~i~~ 77 (230)
.++++.+++. .+.|+.+-+-...+ .++..+.++.+.+ |+|+|.+|.-..... .......-++.++.+++
T Consensus 121 ~~~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~ 199 (336)
T 1f76_A 121 DNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKN 199 (336)
T ss_dssp HHHHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHH
Confidence 3444444432 24577776633211 3556666666665 899999997543311 01111234688888888
Q ss_pred hC---------CccEEE--cCCCCCHHHH---HHHHHhhCCcEEEEe
Q 026945 78 AL---------RIPVLA--NGNVRHMEDV---QKCLEETGCEGVLSA 110 (230)
Q Consensus 78 ~~---------~ipvi~--nGgI~s~~da---~~~l~~~gadgVmig 110 (230)
.+ ++||++ ++++ +.+++ .+.+++.|+|+|.+.
T Consensus 200 ~~~~~~~~~g~~~Pv~vKi~~~~-~~~~~~~~a~~l~~~Gvd~i~vs 245 (336)
T 1f76_A 200 KQNDLQAMHHKYVPIAVKIAPDL-SEEELIQVADSLVRHNIDGVIAT 245 (336)
T ss_dssp HHHHHHHHHTSCCCEEEECCSCC-CHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHhhhhcccccCceEEEecCCC-CHHHHHHHHHHHHHcCCcEEEEe
Confidence 77 799874 4554 33443 455666899999875
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=94.37 E-value=0.4 Score=38.85 Aligned_cols=89 Identities=15% Similarity=0.073 Sum_probs=55.0
Q ss_pred HHHHHHhhcC-Cce--EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 9 SLVEKLALNL-NVP--VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~p--vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
++++++++.. +.| +.+|+- +.. ..+++.+.++|+++|++|+-... ..-.+.++.+++. +++.++
T Consensus 48 ~~i~~lr~~~~~~~i~ld~~l~---d~p--~~~~~~~~~aGad~i~vh~~~~~-------~~~~~~~~~~~~~-g~~~~~ 114 (218)
T 3jr2_A 48 KAVSTLRHNHPNHILVCDMKTT---DGG--AILSRMAFEAGADWITVSAAAHI-------ATIAACKKVADEL-NGEIQI 114 (218)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC---SCH--HHHHHHHHHHTCSEEEEETTSCH-------HHHHHHHHHHHHH-TCEEEE
T ss_pred HHHHHHHHhCCCCcEEEEEeec---ccH--HHHHHHHHhcCCCEEEEecCCCH-------HHHHHHHHHHHHh-CCccce
Confidence 5678887763 444 456664 212 23779999999999999985321 0012344455543 555542
Q ss_pred -cCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 86 -NGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 86 -nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.=++.|++++.++.+ .|+|.+.+..
T Consensus 115 d~l~~~T~~~~~~~~~-~g~d~v~~~~ 140 (218)
T 3jr2_A 115 EIYGNWTMQDAKAWVD-LGITQAIYHR 140 (218)
T ss_dssp ECCSSCCHHHHHHHHH-TTCCEEEEEC
T ss_pred eeeecCCHHHHHHHHH-cCccceeeee
Confidence 233357788888775 5999876643
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.51 Score=37.67 Aligned_cols=90 Identities=18% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc-HHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD-WNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~-~~~i~~i~~~~~ipvi~ 85 (230)
.++++.+++. .++||.+-.-+... .+ .+++.+.++|++.+++|.... ..+ .+.++.+++ .+++++.
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~-~~--~~~~~~~~~Gad~v~v~~~~~--------~~~~~~~~~~~~~-~g~~~~v 108 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDG-GH--FESQLLFDAGADYVTVLGVTD--------VLTIQSCIRAAKE-AGKQVVV 108 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSC-HH--HHHHHHHHTTCSEEEEETTSC--------HHHHHHHHHHHHH-HTCEEEE
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccc-hH--HHHHHHHhcCCCEEEEeCCCC--------hhHHHHHHHHHHH-cCCeEEE
Confidence 3678888876 47888653322221 22 458999999999999998532 112 234444444 4666654
Q ss_pred c-CCCCCH-HHHHHHHHhhCCcEEEEe
Q 026945 86 N-GNVRHM-EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 86 n-GgI~s~-~da~~~l~~~gadgVmig 110 (230)
. =+..++ +.+..+.+ .|+|.|.+.
T Consensus 109 ~~~~~~t~~~~~~~~~~-~g~d~i~v~ 134 (211)
T 3f4w_A 109 DMICVDDLPARVRLLEE-AGADMLAVH 134 (211)
T ss_dssp ECTTCSSHHHHHHHHHH-HTCCEEEEE
T ss_pred EecCCCCHHHHHHHHHH-cCCCEEEEc
Confidence 1 235565 44555554 899998774
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.34 Score=43.17 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCC-CEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
|.|.++ ++++.+ .+.||.+|.-+. +.++....++.+.+.|. +.+.+|+-+... ......|+..|..+++..
T Consensus 145 ~~N~pL----L~~va~-~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YP--tp~~~~nL~aI~~Lk~~f 216 (385)
T 1vli_A 145 INHLPL----LKYVAR-LNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIMHCVAKYP--APPEYSNLSVIPMLAAAF 216 (385)
T ss_dssp TTCHHH----HHHHHT-TCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEEEECSSSS--CCGGGCCTTHHHHHHHHS
T ss_pred ccCHHH----HHHHHh-cCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEEeccCCCC--CChhhcCHHHHHHHHHHc
Confidence 345555 444533 589999999885 78888888999999998 777778643221 112246889999999998
Q ss_pred -CccEEEcCCCCC-HHHHHHHHHhhCCc
Q 026945 80 -RIPVLANGNVRH-MEDVQKCLEETGCE 105 (230)
Q Consensus 80 -~ipvi~nGgI~s-~~da~~~l~~~gad 105 (230)
++||..++--.. ..-...+.. .||+
T Consensus 217 ~~lpVG~SdHt~G~~~~~~AAvA-lGA~ 243 (385)
T 1vli_A 217 PEAVIGFSDHSEHPTEAPCAAVR-LGAK 243 (385)
T ss_dssp TTSEEEEEECCSSSSHHHHHHHH-TTCS
T ss_pred CCCCEEeCCCCCCchHHHHHHHH-cCCC
Confidence 899987654333 455555665 7898
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.18 Score=43.28 Aligned_cols=107 Identities=23% Similarity=0.296 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
|.+.+.++++... +++||.- |..+...+..+..+.+.+.|++.|--||-... .....+.++++.+.. +
T Consensus 140 D~~~~~~Li~~a~---~l~vTFH-RAFD~~~d~~~Ale~Li~lGvdrILTSG~~~~------a~~Gl~~Lk~Lv~~a~~r 209 (287)
T 3iwp_A 140 DKELCMSLMAICR---PLPVTFH-RAFDMVHDPMAALETLLTLGFERVLTSGCDSS------ALEGLPLIKRLIEQAKGR 209 (287)
T ss_dssp CHHHHHHHHHHHT---TSCEEEC-GGGGGCSCHHHHHHHHHHHTCSEEEECTTSSS------TTTTHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHcC---CCcEEEE-CchhccCCHHHHHHHHHHcCCCEEECCCCCCC------hHHhHHHHHHHHHHhCCC
Confidence 4566777777653 3677763 43221123556667777889999988874221 133567777776654 4
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEE-EehhhhhCCccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVL-SAESLLENPALF 120 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVm-igR~~l~nP~lf 120 (230)
|+|++.|||+ .+.+.++++.+|++-+- .++.....+--|
T Consensus 210 I~ImaGGGV~-~~Ni~~l~~~tG~~~~H~S~~~~~~s~m~~ 249 (287)
T 3iwp_A 210 IVVMPGGGIT-DRNLQRILEGSGATEFHCSARSTRDSGMKF 249 (287)
T ss_dssp SEEEECTTCC-TTTHHHHHHHHCCSEEEECCEEEECCSCSS
T ss_pred CEEEECCCcC-HHHHHHHHHhhCCCEEeECcCcccCCcccc
Confidence 9999999994 67888888889999884 444443333333
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.1 Score=45.29 Aligned_cols=87 Identities=15% Similarity=0.083 Sum_probs=57.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+|
T Consensus 43 D~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~-Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 43 DLPALGRSIERLIDGGVHAIAPLGSTGEGAY-LSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 4567888999999999999999987766321 11111224455555543 58988654444555554433 358999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 122 avlv~~P~y~~~s 134 (315)
T 3na8_A 122 AVMVLPISYWKLN 134 (315)
T ss_dssp EEEECCCCSSCCC
T ss_pred EEEECCCCCCCCC
Confidence 9999887777664
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.73 Score=40.39 Aligned_cols=91 Identities=8% Similarity=-0.065 Sum_probs=61.9
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCCC-EEEEecCCCCCcCCCCCccc----HHHHHHHHhhCCccEE--EcCC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCS-LLAVHGRTRDEKDGKKFRAD----WNAIKAVKNALRIPVL--ANGN 88 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~-~i~vh~rt~~~~~~~~~~~~----~~~i~~i~~~~~ipvi--~nGg 88 (230)
...+.||.+-+. |.+.++..+.++.++++|++ +|.|.--....+.+..-..+ .+.++.+++.+++||+ ..-+
T Consensus 125 ~~~~~pvivsI~-g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~ 203 (345)
T 3oix_A 125 QPDSKNHFLSLV-GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPY 203 (345)
T ss_dssp STTCCCCEEEEC-CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCC
T ss_pred ccCCCCEEEEec-CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 446789888775 56778999999999999987 99886432222111000123 3455666777788987 4455
Q ss_pred CCCHHHHHHHHHhhCCcEEE
Q 026945 89 VRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 89 I~s~~da~~~l~~~gadgVm 108 (230)
.+..++.+.++..|+++|.
T Consensus 204 -~~~~~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 204 -FDIVHFDQAAAIFNXYPLT 222 (345)
T ss_dssp -CCHHHHHHHHHHHTTSCCS
T ss_pred -CCHHHHHHHHHHhCCCceE
Confidence 5888888888888988773
|
| >3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.23 Score=45.42 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++..+++++.+++||.++=.+.+..++.++++...+|.+.+
T Consensus 288 ~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~ 328 (470)
T 3p0w_A 288 REVMAEFKRATGIPTATNMIATDWRQMGHAVQLHAVDIPLA 328 (470)
T ss_dssp HHHHHHHHHHHCCCEEESSSSCSHHHHHHHHHTTCCSEEBC
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEe
Confidence 68889999999999999767889999999998666786643
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.1 Score=42.91 Aligned_cols=73 Identities=10% Similarity=-0.008 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~ 112 (230)
....+++..+++|++.+.+++. ..+.++.+++.++-.++..|||+.- .+..++++ .|+|.+.+||+
T Consensus 116 ~v~~~a~~a~~~G~~GvV~sat------------~~~e~~~ir~~~~~f~~v~pGI~~~g~~~~~a~~-~Gad~iVvGr~ 182 (215)
T 3ve9_A 116 FYPYLREVARRVNPKGFVAPAT------------RPSMISRVKGDFPDKLVISPGVGTQGAKPGIALC-HGADYEIVGRS 182 (215)
T ss_dssp GHHHHHHHHHHHCCSEEECCTT------------SHHHHHHHHHHCTTSEEEECCTTSTTCCTTHHHH-TTCSEEEECHH
T ss_pred HHHHHHHHHHHcCCCceeeCCC------------CHHHHHHHHHhCCCcEEEcCCCCcCcCCHHHHHH-cCCCEEEeCHH
Confidence 4667888888899888775331 2356777887764467788999731 14556665 79999999999
Q ss_pred hhhCCcc
Q 026945 113 LLENPAL 119 (230)
Q Consensus 113 ~l~nP~l 119 (230)
++..++-
T Consensus 183 I~~a~dp 189 (215)
T 3ve9_A 183 VYQSADP 189 (215)
T ss_dssp HHTSSSH
T ss_pred HcCCCCH
Confidence 9986553
|
| >3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.25 Score=44.96 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
++..+++++.+++||.++=.+.+..++.++++...+|.+.
T Consensus 273 ~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~di~~ 312 (455)
T 3pfr_A 273 REIMAEFRRRTGIPTATNMIATNWREMCHAIMLQSVDIPL 312 (455)
T ss_dssp HHHHHHHHHHHCCCEEESSSCCSHHHHHHHHHHTCCSEEB
T ss_pred HHHHHHHHhcCCCCEEeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 6888999999999999876788999999999876788664
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.11 Score=44.56 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=56.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc-CCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN-GNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n-GgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++. |+..+ +++.+.. +..|+
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t-~~ai~la~~A~~~Ga 96 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPT-LSKSEHEQVVEITIKTANGRVPVIAGAGSNST-AEAIAFVRHAQNAGA 96 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCBEEECCCSSH-HHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEecCCccH-HHHHHHHHHHHHcCC
Confidence 5567889999999999999999887766321 11111224455555543 5898754 55544 4444333 34899
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 97 davlv~~P~y~~~s 110 (292)
T 2vc6_A 97 DGVLIVSPYYNKPT 110 (292)
T ss_dssp SEEEEECCCSSCCC
T ss_pred CEEEEcCCCCCCCC
Confidence 99999988776653
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.68 Score=39.65 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhcC---CceEEEEECC---CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 6 LVKSLVEKLALNL---NVPVSCKIRV---FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 6 ~~~eiv~~v~~~~---~~pvsvKiR~---g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
...+-|++++.+. ++-|..++-. +...+++++=++.++++|+|.|.++++.. +.+.++++.+.+
T Consensus 133 e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~----------~~~~~~~i~~~~ 202 (290)
T 2hjp_A 133 EFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK----------TPDEILAFVKSW 202 (290)
T ss_dssp HHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCCS----------SSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCCC----------CHHHHHHHHHHc
Confidence 3344455554442 3444444422 12357889999999999999999988532 236789999999
Q ss_pred C--ccEEEcC---CCCCHHHHHHHHHhhC-CcEEEEehhhh
Q 026945 80 R--IPVLANG---NVRHMEDVQKCLEETG-CEGVLSAESLL 114 (230)
Q Consensus 80 ~--ipvi~nG---gI~s~~da~~~l~~~g-adgVmigR~~l 114 (230)
+ +|+++|- ...|.+ -|.+.| +..|.+|-.++
T Consensus 203 ~~~vP~i~n~~~~~~~~~~----eL~~lG~v~~v~~~~~~~ 239 (290)
T 2hjp_A 203 PGKVPLVLVPTAYPQLTEA----DIAALSKVGIVIYGNHAI 239 (290)
T ss_dssp CCSSCEEECGGGCTTSCHH----HHHTCTTEEEEEECSHHH
T ss_pred CCCCCEEEeccCCCCCCHH----HHHhcCCeeEEEechHHH
Confidence 8 9999873 233433 344689 99998876544
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.21 Score=44.19 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...++++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.+.. ++.|||
T Consensus 78 D~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~-Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 156 (360)
T 4dpp_A 78 DLEAYDDLVNIQIQNGAEGVIVGGTTGEGQL-MSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAVGMH 156 (360)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEecccccChhh-CCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 4456778999999999999999998776421 11111223455555544 58998654434555554433 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+--..+..|
T Consensus 157 avlvv~PyY~k~ 168 (360)
T 4dpp_A 157 AALHINPYYGKT 168 (360)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEcCCCCCCC
Confidence 999987766555
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=93.95 E-value=0.64 Score=40.06 Aligned_cols=117 Identities=8% Similarity=0.061 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC-C--cccH-HHHHHH---
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK-F--RADW-NAIKAV--- 75 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~-~--~~~~-~~i~~i--- 75 (230)
+-+...++.|.... ++||.+-+-.|+ +..+..+.++.+.++|+..|.+-+.+...+++.. + -.+. +.+.+|
T Consensus 65 ~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa 144 (302)
T 3fa4_A 65 NDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAA 144 (302)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHH
Confidence 44555666777654 899999998875 4556788899999999999999886543332211 1 1222 334444
Q ss_pred Hhh---CCccEEEcCCCCCH-----HHHHHH---HHhhCCcEEEEehhhhhCCccccch
Q 026945 76 KNA---LRIPVLANGNVRHM-----EDVQKC---LEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 76 ~~~---~~ipvi~nGgI~s~-----~da~~~---l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++. .+.+++.|....+. +++.+. ..+.|||+|++= .+.++.-+.++
T Consensus 145 ~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~--g~~~~~ei~~~ 201 (302)
T 3fa4_A 145 VQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLE--GITSREMARQV 201 (302)
T ss_dssp HHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEET--TCCCHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeec--CCCCHHHHHHH
Confidence 332 25566666655443 344322 234799999882 23455544433
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.63 Score=37.00 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH-HHHHHHHhhCCccEEE-
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW-NAIKAVKNALRIPVLA- 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~-~~i~~i~~~~~ipvi~- 85 (230)
++++.+++.. +.|+.+-+-+. |.. ..+++.+.++|+|++++|.-... ... +.++.+++ .++++.+
T Consensus 42 ~~i~~l~~~~~~~~i~~~l~~~-di~--~~~~~~a~~~Gad~v~vh~~~~~--------~~~~~~~~~~~~-~g~~~gv~ 109 (207)
T 3ajx_A 42 SVITAVKKAHPDKIVFADMKTM-DAG--ELEADIAFKAGADLVTVLGSADD--------STIAGAVKAAQA-HNKGVVVD 109 (207)
T ss_dssp HHHHHHHHHSTTSEEEEEEEEC-SCH--HHHHHHHHHTTCSEEEEETTSCH--------HHHHHHHHHHHH-HTCEEEEE
T ss_pred HHHHHHHHhCCCCeEEEEEEec-Ccc--HHHHHHHHhCCCCEEEEeccCCh--------HHHHHHHHHHHH-cCCceEEE
Confidence 4677787776 78887632222 322 23678889999999999985321 112 22333333 3555522
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.-...++++..+.+.+.|+|.|.+.
T Consensus 110 ~~s~~~p~~~~~~~~~~g~d~v~~~ 134 (207)
T 3ajx_A 110 LIGIEDKATRAQEVRALGAKFVEMH 134 (207)
T ss_dssp CTTCSSHHHHHHHHHHTTCSEEEEE
T ss_pred EecCCChHHHHHHHHHhCCCEEEEE
Confidence 2244477763334445689998444
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.13 Score=44.28 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=56.7
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+-++.+++.. ..||-|-++ + .+-++.+.++|+|.|-+..-+. +.++++.+.+ ++.+.+
T Consensus 196 ~Av~~ar~~~p~~kIeVEv~---t----l~e~~eAl~aGaDiImLDn~s~------------~~l~~av~~~~~~v~lea 256 (300)
T 3l0g_A 196 LAIQRLRKNLKNEYIAIECD---N----ISQVEESLSNNVDMILLDNMSI------------SEIKKAVDIVNGKSVLEV 256 (300)
T ss_dssp HHHHHHHHHSSSCCEEEEES---S----HHHHHHHHHTTCSEEEEESCCH------------HHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhCCCCCEEEEEC---C----HHHHHHHHHcCCCEEEECCCCH------------HHHHHHHHhhcCceEEEE
Confidence 4455555443 355655544 2 2445556678999998855221 3444443332 588999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| +++.+.++.+ +|+|.+.+|.-...-|++
T Consensus 257 SGGI-t~~~i~~~A~-tGVD~IsvGalthsa~~l 288 (300)
T 3l0g_A 257 SGCV-NIRNVRNIAL-TGVDYISIGCITNSFQNK 288 (300)
T ss_dssp ESSC-CTTTHHHHHT-TTCSEEECGGGTSSCCCC
T ss_pred ECCC-CHHHHHHHHH-cCCCEEEeCccccCCCcc
Confidence 9999 6788887665 999999998544344543
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.46 Score=41.61 Aligned_cols=92 Identities=18% Similarity=0.248 Sum_probs=61.0
Q ss_pred CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---CCCCCc--cc----HHHHHHHHhhCCccEEE--c
Q 026945 18 LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DGKKFR--AD----WNAIKAVKNALRIPVLA--N 86 (230)
Q Consensus 18 ~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~~~--~~----~~~i~~i~~~~~ipvi~--n 86 (230)
.+.|+.+-+- |.+.+...+.++.++++|+|.|.+|......+ .++.+. .+ .+.++.+++.+++||+. .
T Consensus 56 ~~~p~~vQL~-g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR 134 (350)
T 3b0p_A 56 EEHPIALQLA-GSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR 134 (350)
T ss_dssp GGCSEEEEEE-CSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred CCCeEEEEeC-CCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe
Confidence 3678888876 55678888999999999999999997533211 112111 12 45667777778999987 2
Q ss_pred -C--CCCCH---HHHHHHHHhhCCcEEEEe
Q 026945 87 -G--NVRHM---EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -G--gI~s~---~da~~~l~~~gadgVmig 110 (230)
| +..+. .++.+.+++.|+|+|.+-
T Consensus 135 ~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~ 164 (350)
T 3b0p_A 135 LGLEGKETYRGLAQSVEAMAEAGVKVFVVH 164 (350)
T ss_dssp SCBTTCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCcCccccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3 12232 334456667999998764
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=93.89 E-value=0.17 Score=43.73 Aligned_cols=83 Identities=12% Similarity=0.137 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|||
T Consensus 27 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 105 (309)
T 3fkr_A 27 DLASQKRAVDFMIDAGSDGLCILANFSEQFA-ITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAA 105 (309)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCccc-CCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999997766321 11111234455555544 59998664434444544333 347999
Q ss_pred EEEEehhhh
Q 026945 106 GVLSAESLL 114 (230)
Q Consensus 106 gVmigR~~l 114 (230)
++|+--..+
T Consensus 106 avlv~~Pyy 114 (309)
T 3fkr_A 106 MVMAMPPYH 114 (309)
T ss_dssp EEEECCSCB
T ss_pred EEEEcCCCC
Confidence 999988765
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.28 Score=42.41 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CCC--C----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCC--CCCccc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VFP--N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRAD 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g~--~----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~~~ 68 (230)
.+..+++++.... .++.|-.-+- +|- | ..+..+..+-+++.|+|.|.+.-.|.-..+. ..+..+
T Consensus 112 i~~Tk~vv~~ah~-~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~g~p~L~ 190 (305)
T 1rvg_A 112 VRETRRVVEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFID 190 (305)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCC
T ss_pred HHHHHHHHHHHHH-cCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCCccC
Confidence 3455566665543 3666665553 221 1 0123445555566899999886666543322 134679
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
++.+++|++.+++|++.-|+=.=|++..+.++++|-+
T Consensus 191 ~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~ 227 (305)
T 1rvg_A 191 HARLERIARLVPAPLVLHGASAVPPELVERFRASGGE 227 (305)
T ss_dssp HHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccc
Confidence 9999999999999999999887788888888887765
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.88 E-value=0.23 Score=42.89 Aligned_cols=82 Identities=11% Similarity=0.155 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHH---HhhCCcE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l---~~~gadg 106 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++|||+.=|-.+.+++.+.. ++.|+|+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gada 105 (313)
T 3dz1_A 27 DDVSIDRLTDFYAEVGCEGVTVLGILGEAPK-LDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAG 105 (313)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESTGGGTGGG-SCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCccCcChhh-CCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCE
Confidence 5567888999999999999999987766321 11111234555555554 68998654444555554433 3479999
Q ss_pred EEEehhh
Q 026945 107 VLSAESL 113 (230)
Q Consensus 107 VmigR~~ 113 (230)
+|+--..
T Consensus 106 vlv~~P~ 112 (313)
T 3dz1_A 106 VMIAPPP 112 (313)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 9997654
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=93.87 E-value=0.18 Score=43.50 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHH---HHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~---l~~~gad 105 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+. .++.|+|
T Consensus 33 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 111 (307)
T 3s5o_A 33 DYGKLEENLHKLGTFPFRGFVVQGSNGEFPF-LTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGAD 111 (307)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEESSGGGTGGG-SCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhh-CCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 4566778999999999999999998776421 11111234556666655 5898865444455555433 3358999
Q ss_pred EEEEehhhhhC
Q 026945 106 GVLSAESLLEN 116 (230)
Q Consensus 106 gVmigR~~l~n 116 (230)
++|+--..+..
T Consensus 112 avlv~~P~y~~ 122 (307)
T 3s5o_A 112 AAMVVTPCYYR 122 (307)
T ss_dssp EEEEECCCTTG
T ss_pred EEEEcCCCcCC
Confidence 99998777654
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.61 Score=40.58 Aligned_cols=98 Identities=16% Similarity=0.100 Sum_probs=65.3
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
-=.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||
T Consensus 88 Er~~vi~~~ve~~~grvpViaGvg~-~st~eai~la~~A~~~Gadavlv~~P~Y~~---~s~~~l~~~f~~VA~a~~lPi 163 (332)
T 2r8w_A 88 ERRRAIEAAATILRGRRTLMAGIGA-LRTDEAVALAKDAEAAGADALLLAPVSYTP---LTQEEAYHHFAAVAGATALPL 163 (332)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEECC-SSHHHHHHHHHHHHHHTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCE
Confidence 3345666665544 5899887653 356889999999999999999887643211 011123567788889999998
Q ss_pred E-Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 84 L-AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 84 i-~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
+ .| |---+++.+.++.+...+-||
T Consensus 164 ilYn~P~~tg~~l~~e~~~~La~~pnIvgi 193 (332)
T 2r8w_A 164 AIYNNPTTTRFTFSDELLVRLAYIPNIRAI 193 (332)
T ss_dssp EEECCHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred EEEeCccccCcCCCHHHHHHHHcCCCEEEE
Confidence 6 45 433578888877654444444
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.56 Score=40.30 Aligned_cols=99 Identities=16% Similarity=0.125 Sum_probs=66.3
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 70 r~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 145 (304)
T 3l21_A 70 KIELLRAVLEAVGDRARVIAGAGT-YDTAHSIRLAKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPML 145 (304)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTSCSSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345666665544 5899887532 456899999999999999999887643221 0111235677888898999986
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEEEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgVmi 109 (230)
.| |---+++.+.++.+...+-||=-
T Consensus 146 lYn~P~~tg~~l~~~~~~~La~~pnIvgiKd 176 (304)
T 3l21_A 146 LYDIPGRSAVPIEPDTIRALASHPNIVGVXD 176 (304)
T ss_dssp EEECHHHHSSCCCHHHHHHHHTSTTEEEEEE
T ss_pred EEeCccccCCCCCHHHHHHHhcCCCEEEEEC
Confidence 54 55567888887765444444433
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=93.86 E-value=0.27 Score=42.32 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=62.1
Q ss_pred HHHHHHHhhc-CCceEEEEECCCC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 8 KSLVEKLALN-LNVPVSCKIRVFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 8 ~eiv~~v~~~-~~~pvsvKiR~g~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.+-|++.+.+ .+.++.+--|..- ..+++++=++.+.++|+|.|.+++.+ +.+.++++.+.+++|
T Consensus 141 ~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~~-----------~~ee~~~~~~~~~~P 209 (298)
T 3eoo_A 141 VDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMK-----------TLDDYRRFKEAVKVP 209 (298)
T ss_dssp HHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCC-----------SHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCCC-----------CHHHHHHHHHHcCCC
Confidence 3334444433 3455666556531 24567888888999999999998842 458899999999999
Q ss_pred EEEc---CC---CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 83 VLAN---GN---VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 83 vi~n---Gg---I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
|.+| || ..|.++ |.+.|+..|.+|-.++
T Consensus 210 l~~n~~~~g~tp~~~~~e----L~~lGv~~v~~~~~~~ 243 (298)
T 3eoo_A 210 ILANLTEFGSTPLFTLDE----LKGANVDIALYCCGAY 243 (298)
T ss_dssp BEEECCTTSSSCCCCHHH----HHHTTCCEEEECSHHH
T ss_pred eEEEeccCCCCCCCCHHH----HHHcCCeEEEEchHHH
Confidence 9876 33 234333 4458999999975554
|
| >2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.37 Score=43.33 Aligned_cols=93 Identities=13% Similarity=0.272 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcC-------CceEEEEE-------CCC-------CChHHHHHHHH-HHHHcCCCEEEEecCCCCCcCCCC
Q 026945 7 VKSLVEKLALNL-------NVPVSCKI-------RVF-------PNLQDTIKYAK-MLEDAGCSLLAVHGRTRDEKDGKK 64 (230)
Q Consensus 7 ~~eiv~~v~~~~-------~~pvsvKi-------R~g-------~~~~~~~~~a~-~l~~~G~~~i~vh~rt~~~~~~~~ 64 (230)
-.+.++++++++ ++.+.+-. .-. |+.++++++.. .+++.++.+|. | ..
T Consensus 223 d~~~v~~vreav~~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i~~iE-------e--P~- 292 (427)
T 2pa6_A 223 SREALDLLTESVKKAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPIVSIE-------D--PF- 292 (427)
T ss_dssp HHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEE-------C--CS-
T ss_pred hHHHHHHHHHHHHHhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCCcEEE-------c--CC-
Confidence 345566665554 45565555 222 36667888854 78888877776 2 11
Q ss_pred CcccHHHHHHHHhhCCccEEEcCC-CCCHHHHHHHHHhhCCcEEEE
Q 026945 65 FRADWNAIKAVKNALRIPVLANGN-VRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGg-I~s~~da~~~l~~~gadgVmi 109 (230)
.+-||+..+++++..++||.+.=. ++++.++.++++...+|.|.+
T Consensus 293 ~~~d~~~~~~l~~~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~i 338 (427)
T 2pa6_A 293 HEEDFEGFAMITKELDIQIVGDDLFVTNVERLRKGIEMKAANALLL 338 (427)
T ss_dssp CTTCHHHHHHHHHHSSSEEEESTTTTTCHHHHHHHHHHTCCSEEEE
T ss_pred ChhhHHHHHHHHhhCCCeEEeCccccCCHHHHHHHHHhCCCCEEEE
Confidence 245899999999999999977544 566999999998777898877
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.44 Score=41.11 Aligned_cols=94 Identities=16% Similarity=0.227 Sum_probs=61.6
Q ss_pred HHHHHHHHhhcCCceEEEE--E--CCC------CChHHHHHHHHHHHHcCCC----EEEEecCCCCCcCCCCCcccHHHH
Q 026945 7 VKSLVEKLALNLNVPVSCK--I--RVF------PNLQDTIKYAKMLEDAGCS----LLAVHGRTRDEKDGKKFRADWNAI 72 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvK--i--R~g------~~~~~~~~~a~~l~~~G~~----~i~vh~rt~~~~~~~~~~~~~~~i 72 (230)
+.+++++.. ..++|+.+= + |.| .+.+.....++...+.|+| .|-+- |+ +.+
T Consensus 165 la~vv~ea~-~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaELGADs~~tivK~~---------y~-----e~f 229 (307)
T 3fok_A 165 TAHAVNEAA-AAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGLGNDSSYTWMKLP---------VV-----EEM 229 (307)
T ss_dssp HHHHHHHHH-HTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTCSSCCSSEEEEEE---------CC-----TTH
T ss_pred HHHHHHHHH-HcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHhCCCcCCCEEEeC---------Cc-----HHH
Confidence 344444443 358887663 2 322 2344556677788899999 77651 21 346
Q ss_pred HHHHhhCCccEEEcCCCC--CHHHHHHHHH---h-hCCcEEEEehhhhh
Q 026945 73 KAVKNALRIPVLANGNVR--HMEDVQKCLE---E-TGCEGVLSAESLLE 115 (230)
Q Consensus 73 ~~i~~~~~ipvi~nGgI~--s~~da~~~l~---~-~gadgVmigR~~l~ 115 (230)
+++.+.+++||+..||=. +.+++.+..+ + .|+.|+.+||-++.
T Consensus 230 ~~Vv~a~~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ 278 (307)
T 3fok_A 230 ERVMESTTMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLY 278 (307)
T ss_dssp HHHGGGCSSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSS
T ss_pred HHHHHhCCCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhcc
Confidence 888888999998777755 5666665554 2 59999999997666
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.45 Score=40.03 Aligned_cols=71 Identities=18% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE-----cCC-CCCHHHHHHHH------HhhC
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----NGN-VRHMEDVQKCL------EETG 103 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~-----nGg-I~s~~da~~~l------~~~g 103 (230)
.+-+...++.|++.|.+-.--.. .|. .+.+..++.+++.+++||.+ .|| +.|.+++..++ ++.|
T Consensus 11 ~~~a~~A~~~GAdRIELc~~L~~--GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~G 86 (256)
T 1twd_A 11 MECALTAQQNGADRVELCAAPKE--GGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG 86 (256)
T ss_dssp HHHHHHHHHTTCSEEEECBCGGG--TCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEcCCccc--CCC--CCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcC
Q ss_pred CcEEEEe
Q 026945 104 CEGVLSA 110 (230)
Q Consensus 104 adgVmig 110 (230)
+|||.+|
T Consensus 87 adGvV~G 93 (256)
T 1twd_A 87 FPGLVTG 93 (256)
T ss_dssp CSEEEEC
T ss_pred CCEEEEe
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=93.74 E-value=0.57 Score=38.55 Aligned_cols=44 Identities=18% Similarity=0.329 Sum_probs=30.7
Q ss_pred HHHHHHhhc--CCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALN--LNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~--~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~r 55 (230)
++++++++. ..+++.+|+= |..++ ..+++.+.++|+|++|||+-
T Consensus 54 ~~v~~l~~~~g~~v~lD~Kl~---DipnTv~~~~~~~~~~gad~vtvh~~ 100 (228)
T 3m47_A 54 DIIAEFRKRFGCRIIADFKVA---DIPETNEKICRATFKAGADAIIVHGF 100 (228)
T ss_dssp HHHHHHHHHHCCEEEEEEEEC---SCHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred HHHHHHHhcCCCeEEEEEeec---ccHhHHHHHHHHHHhCCCCEEEEecc
Confidence 355666653 3456666664 44544 45888899999999999984
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=93.74 E-value=0.99 Score=38.96 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC---cccH-HHHHHH-
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF---RADW-NAIKAV- 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~---~~~~-~~i~~i- 75 (230)
.+-+...++.|...+ ++||.+-+-.|+ +..+..+.++.+.++|+..|.+-+.+...+.+..+ -.+. +.+.+|
T Consensus 71 ~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~ 150 (307)
T 3lye_A 71 LHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIR 150 (307)
T ss_dssp HHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHH
Confidence 344556677777765 499999998875 45677888999999999999998876543332211 1222 333343
Q ss_pred --Hhh---CCccEEEcCCCCCH-----HHHHH---HHHhhCCcEEEEehhhhhCCccccch
Q 026945 76 --KNA---LRIPVLANGNVRHM-----EDVQK---CLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 76 --~~~---~~ipvi~nGgI~s~-----~da~~---~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++. .+.+++.|+...+. +++.+ ...+.|||+|++= .+.++..+.++
T Consensus 151 Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~--~~~~~~~~~~i 209 (307)
T 3lye_A 151 AAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLE--GFRSKEQAAAA 209 (307)
T ss_dssp HHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEEC--CCSCHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEec--CCCCHHHHHHH
Confidence 332 35667777755543 23332 2234899999883 23455544444
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.25 Score=42.68 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC-
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC- 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga- 104 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+
T Consensus 26 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~ 104 (311)
T 3h5d_A 26 NFDAIPALIEHLLAHHTDGILLAGTTAESPT-LTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGF 104 (311)
T ss_dssp CTTHHHHHHHHHHHTTCCCEEESSTTTTGGG-SCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCC
Confidence 4567788999999999999999998776421 11111234455556654 58998765544556665443 33586
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 105 davlv~~P~y~~~s 118 (311)
T 3h5d_A 105 AAGLAIVPYYNKPS 118 (311)
T ss_dssp SEEEEECCCSSCCC
T ss_pred cEEEEcCCCCCCCC
Confidence 99999988777664
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.77 Score=39.85 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCC----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFP----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
...+-|++++.+. +.++.+--|... ..+++++=++.++++|+|.|.+++. .+.+.++++.+.++
T Consensus 157 e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~-----------~~~e~~~~i~~~l~ 225 (318)
T 1zlp_A 157 EHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAGADATFVEAP-----------ANVDELKEVSAKTK 225 (318)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCC-----------CSHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCC-----------CCHHHHHHHHHhcC
Confidence 3344455554442 334444445422 1257888889999999999999873 24588999999999
Q ss_pred ccEEEc---C---CCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 81 IPVLAN---G---NVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 81 ipvi~n---G---gI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|+.+| | ...+.++ |.+.|+..|.+|-.++
T Consensus 226 ~P~lan~~~~g~~~~~~~~e----L~~lGv~~v~~~~~~~ 261 (318)
T 1zlp_A 226 GLRIANMIEGGKTPLHTPEE----FKEMGFHLIAHSLTAV 261 (318)
T ss_dssp SEEEEEECTTSSSCCCCHHH----HHHHTCCEEEECSHHH
T ss_pred CCEEEEeccCCCCCCCCHHH----HHHcCCeEEEEchHHH
Confidence 999766 2 2344333 4458999999986655
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.82 Score=38.83 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 55 r~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPii 130 (289)
T 2yxg_A 55 HKKVIEKVVDVVNGRVQVIAGAGS-NCTEEAIELSVFAEDVGADAVLSITPYYNK---PTQEGLRKHFGKVAESINLPIV 130 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECCC-SSHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566655543 5888877643 356889999999999999999887643211 0111235677888888999986
Q ss_pred -Ec-----CCCCCHHHHHHHH-HhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCL-EETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l-~~~gadgV 107 (230)
.| |---+++.+.++. +...+-||
T Consensus 131 lYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (289)
T 2yxg_A 131 LYNVPSRTAVNLEPKTVKLLAEEYSNISAV 160 (289)
T ss_dssp EEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EEeCccccCcCCCHHHHHHHHHhCCCEEEE
Confidence 44 4445788888776 43344444
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.11 Score=44.86 Aligned_cols=85 Identities=12% Similarity=0.148 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEE-EcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVL-ANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi-~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||| +.|+ |.+++.+.. ++.||
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~eEr~~vi~~~~~~~~grvpViaGvg~--st~~ai~la~~A~~~Ga 107 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGNTGEFYA-LTIEEAKQVATRVTELVNGRATVVAGIGY--SVDTAIELGKSAIDSGA 107 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEEECS--SHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccCChhh-CCHHHHHHHHHHHHHHhCCCCeEEecCCc--CHHHHHHHHHHHHHcCC
Confidence 5567889999999999999999887765321 11111234455555544 58987 4566 555554333 34799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 108 davlv~~P~y~~~s 121 (314)
T 3d0c_A 108 DCVMIHQPVHPYIT 121 (314)
T ss_dssp SEEEECCCCCSCCC
T ss_pred CEEEECCCCCCCCC
Confidence 99999988776664
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.92 Score=38.63 Aligned_cols=97 Identities=12% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 55 r~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 130 (294)
T 2ehh_A 55 HEKVIEFAVKRAAGRIKVIAGTGG-NATHEAVHLTAHAKEVGADGALVVVPYYNK---PTQRGLYEHFKTVAQEVDIPII 130 (294)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECCC-SCHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566655543 5888877643 356889999999999999999887643211 0111235677788888999986
Q ss_pred -Ec-----CCCCCHHHHHHHH-HhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCL-EETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l-~~~gadgV 107 (230)
.| |---+++.+.++. +...+-||
T Consensus 131 lYn~P~~tg~~l~~~~~~~La~~~pnivgi 160 (294)
T 2ehh_A 131 IYNIPSRTCVEISVDTMFKLASECENIVAS 160 (294)
T ss_dssp EEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EEeCCcccCcCCCHHHHHHHHhhCCCEEEE
Confidence 45 4335788888776 43344444
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.14 Score=43.69 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCc---CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEE
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEK---DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgV 107 (230)
..+-|+.++++|+.++.+--|-+... .|...-.+.+.|++|++.+++||++=--|....+++.+ +..|+|.|
T Consensus 20 ~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqil-ea~GaD~I 94 (291)
T 3o07_A 20 TPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQII-EALEVDYI 94 (291)
T ss_dssp SHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHH-HHTTCSEE
T ss_pred CHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHH-HHcCCCEE
Confidence 35779999999999999875543321 11111247899999999999999998888888888754 45999988
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=93.52 E-value=1 Score=38.46 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=66.9
Q ss_pred HHHHHHHHhhcC---CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 7 VKSLVEKLALNL---NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~---~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||
T Consensus 62 r~~v~~~~~~~~~g~rvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPi 137 (301)
T 3m5v_A 62 HRTCIEIAVETCKGTKVKVLAGAGS-NATHEAVGLAKFAKEHGADGILSVAPYYNK---PTQQGLYEHYKAIAQSVDIPV 137 (301)
T ss_dssp HHHHHHHHHHHHTTSSCEEEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHhCCCCCeEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhCCCCE
Confidence 345566655543 4788886532 456899999999999999999887643221 011123567788889999998
Q ss_pred E-Ec-----CCCCCHHHHHHHHHh-hCCcEEEEe
Q 026945 84 L-AN-----GNVRHMEDVQKCLEE-TGCEGVLSA 110 (230)
Q Consensus 84 i-~n-----GgI~s~~da~~~l~~-~gadgVmig 110 (230)
+ .| |---+++.+.++.+. ..+-||=-+
T Consensus 138 ilYn~P~~tg~~l~~~~~~~La~~~pnivgiKds 171 (301)
T 3m5v_A 138 LLYNVPGRTGCEISTDTIIKLFRDCENIYGVKEA 171 (301)
T ss_dssp EEEECHHHHSCCCCHHHHHHHHHHCTTEEEEEEC
T ss_pred EEEeCchhhCcCCCHHHHHHHHhcCCCEEEEEeC
Confidence 6 44 555688888887765 455555333
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=93.50 E-value=0.74 Score=39.52 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=64.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|++-+..-.... .+..--+++.+.|.+++++||+
T Consensus 67 r~~vi~~~~~~~~grvpViaGvg~-~st~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 142 (306)
T 1o5k_A 67 REKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKLVKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIV 142 (306)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEcCCC-ccHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345566655543 5888877643 356889999999999999999887643211 0111235677788888899986
Q ss_pred -Ec-----CCCCCHHHHHHHH-HhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCL-EETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l-~~~gadgV 107 (230)
.| |---+++.+.++. +...+-||
T Consensus 143 lYn~P~~tg~~l~~~~~~~La~~~pnIvgi 172 (306)
T 1o5k_A 143 VYNVPGRTGVNVLPETAARIAADLKNVVGI 172 (306)
T ss_dssp EEECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EEeCccccCcCCCHHHHHHHHHhCCCEEEE
Confidence 44 4334788888776 43444444
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.75 Score=39.37 Aligned_cols=98 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
-=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||
T Consensus 66 Er~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPi 141 (301)
T 1xky_A 66 EKVALYRHVVSVVDKRVPVIAGTGS-NNTHASIDLTKKATEVGVDAVMLVAPYYNK---PSQEGMYQHFKAIAESTPLPV 141 (301)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCE
T ss_pred HHHHHHHHHHHHhCCCceEEeCCCC-CCHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCE
Confidence 3345666665544 5888877642 456889999999999999999887643211 011123567788888899998
Q ss_pred E-Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 84 L-AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 84 i-~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
+ .| |---+++.+.++.+...+-||
T Consensus 142 ilYn~P~~tg~~l~~~~~~~La~~pnIvgi 171 (301)
T 1xky_A 142 MLYNVPGRSIVQISVDTVVRLSEIENIVAI 171 (301)
T ss_dssp EEEECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred EEEeCccccCCCCCHHHHHHHHcCCCEEEE
Confidence 6 45 433578888777654444444
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=93.48 E-value=0.64 Score=39.34 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=61.7
Q ss_pred HHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHH
Q 026945 10 LVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIK 73 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~ 73 (230)
.++.+++.-...+..=+-.| ++.+.+.++++.++++ +|.|.+-.-..+. .+|..-..-.+.++
T Consensus 6 ~f~~~~~~~~~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~ 84 (271)
T 1ujp_A 6 AFAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVR 84 (271)
T ss_dssp HHHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45555543222233333334 5778899999999999 9999994322110 01110001146788
Q ss_pred HHHhhCCccEEEcCCCC-----CHHHHHHHHHhhCCcEEEEehh
Q 026945 74 AVKNALRIPVLANGNVR-----HMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~-----s~~da~~~l~~~gadgVmigR~ 112 (230)
++++.+++||++-|..+ ..+...+.+.++|+||+.+.-.
T Consensus 85 ~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl 128 (271)
T 1ujp_A 85 EVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDL 128 (271)
T ss_dssp HHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTC
T ss_pred HHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCC
Confidence 89888899999865332 2344555555699999998543
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.67 Score=39.78 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcC-CceEEEEECCC-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVF-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
..+-|++++.+. +.++.+--|.. ...+++++=++.++++|+|.|.+++.. .+.+.++++.+.++
T Consensus 138 ~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----------~~~~~~~~i~~~~~ 207 (295)
T 1s2w_A 138 FALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK----------ADPSDIEAFMKAWN 207 (295)
T ss_dssp HHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS----------SSSHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHcC
Confidence 344455554432 33344433432 235788999999999999999998632 23477888888887
Q ss_pred --ccEEEcCC---CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 81 --IPVLANGN---VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 81 --ipvi~nGg---I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|+++|.. -.+ .. -|.+.|+..|.+|-.++
T Consensus 208 ~~~P~i~~~~~~~~~~---~~-eL~~lGv~~v~~~~~~~ 242 (295)
T 1s2w_A 208 NQGPVVIVPTKYYKTP---TD-HFRDMGVSMVIWANHNL 242 (295)
T ss_dssp TCSCEEECCSTTTTSC---HH-HHHHHTCCEEEECSHHH
T ss_pred CCCCEEEeCCCCCCCC---HH-HHHHcCCcEEEEChHHH
Confidence 99999843 333 33 34458999999985544
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.2 Score=43.37 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=54.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.=|-.+.+++.+.. ++.|+|
T Consensus 30 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 108 (318)
T 3qfe_A 30 DLASQERYYAYLARSGLTGLVILGTNAEAFL-LTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGAN 108 (318)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhh-CCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999998776321 11111234455555544 58988654444555554433 347999
Q ss_pred EEEEehhhhhC
Q 026945 106 GVLSAESLLEN 116 (230)
Q Consensus 106 gVmigR~~l~n 116 (230)
+||+--..+.+
T Consensus 109 avlv~~P~y~~ 119 (318)
T 3qfe_A 109 YVLVLPPAYFG 119 (318)
T ss_dssp EEEECCCCC--
T ss_pred EEEEeCCcccC
Confidence 99998886553
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.66 Score=39.65 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=63.5
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 55 r~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 130 (297)
T 2rfg_A 55 HKRVVALVAEQAQGRVPVIAGAGS-NNPVEAVRYAQHAQQAGADAVLCVAGYYNR---PSQEGLYQHFKMVHDAIDIPII 130 (297)
T ss_dssp HHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHHHHHHHHTCSEEEECCCTTTC---CCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEccCC-CCHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566555543 4888877643 356889999999999999999887543210 0111225677788888999986
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 131 lYn~P~~tg~~l~~~~~~~La~~pnIvgi 159 (297)
T 2rfg_A 131 VYNIPPRAVVDIKPETMARLAALPRIVGV 159 (297)
T ss_dssp EEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred EEeCccccCCCCCHHHHHHHHcCCCEEEE
Confidence 45 444578888777643334443
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.47 Score=40.58 Aligned_cols=108 Identities=23% Similarity=0.295 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CCC--C----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VFP--N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g~--~----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
.+..+++++.... .++.|-.-+- +|- | ..+..+..+-+++.|+|.|.+.-.|.-..+...+..|++
T Consensus 114 i~~Tk~vv~~ah~-~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~ 192 (286)
T 1gvf_A 114 VKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQ 192 (286)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHH
T ss_pred HHHHHHHHHHHHH-cCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccCcCCCCccCHH
Confidence 3455566665544 3666665553 221 1 012345555566789999988666654332223467999
Q ss_pred HHHHHHhhCCccEEEcCCCC-CHHHHHHHHHhhCCcEEEEehhh
Q 026945 71 AIKAVKNALRIPVLANGNVR-HMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~-s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+++|++.+++|++.-|+=. +.+++.++.+ .|+--|=|++.+
T Consensus 193 ~L~~I~~~~~vpLVlHGgSG~~~e~i~~ai~-~Gv~KiNi~Tdl 235 (286)
T 1gvf_A 193 RLAEIREVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATEL 235 (286)
T ss_dssp HHHHHHHHCCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-CCCeEEEEChHH
Confidence 99999999999999998654 4566778876 788877776543
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=93.33 E-value=2.4 Score=35.94 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCC--CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVF--PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g--~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+.+...+++|+..+ +.||.+-+-.| .+.++..+-+.++.++|++.|.+-+.. ...+.|+.+.+ .+|
T Consensus 75 dem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg~----------~~~~~i~~l~~-~GI 143 (275)
T 3vav_A 75 DDIAYHTACVARAQPRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGGE----------WLAETVRFLVE-RAV 143 (275)
T ss_dssp HHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEECCG----------GGHHHHHHHHH-TTC
T ss_pred HHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECCch----------hHHHHHHHHHH-CCC
Confidence 45556677787777 58999999875 356788888888888999999987741 12477888876 489
Q ss_pred cEEEc-----------CCC----CCHHHHHH------HHHhhCCcEEEE
Q 026945 82 PVLAN-----------GNV----RHMEDVQK------CLEETGCEGVLS 109 (230)
Q Consensus 82 pvi~n-----------GgI----~s~~da~~------~l~~~gadgVmi 109 (230)
||++. ||. ++.+.+.+ .+++.|||++.+
T Consensus 144 pv~gHlgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivl 192 (275)
T 3vav_A 144 PVCAHVGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVL 192 (275)
T ss_dssp CEEEEEESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CEEEecCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEe
Confidence 99864 443 24333433 234578888866
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=93.33 E-value=0.076 Score=43.27 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=51.6
Q ss_pred HcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 44 DAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 44 ~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+..+|++.+..... ...++....||+.+..++ ..+.|++..||+ +++.+.++++..++.||=+.+|.-..|-
T Consensus 117 ~~~~d~~LlD~~~~-~~GGtG~~fdw~~l~~~~-~~~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG 188 (205)
T 1nsj_A 117 NYREFPILLDTKTP-EYGGSGKTFDWSLILPYR-DRFRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG 188 (205)
T ss_dssp GGTTSCEEEEESCS-SSSSCCSCCCGGGTGGGG-GGSSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred HcCCCEEEECCCCC-CCCCCCCccCHHHHHhhh-cCCCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCC
Confidence 33488888876543 112222356998876542 347899999999 6889988888789999999988776554
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.24 Score=43.12 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CCC--C-------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCC--CCCc--ccH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VFP--N-------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFR--ADW 69 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g~--~-------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~--~~~ 69 (230)
.+...++++.... .++.|-.-+- +|- | ..+..+..+-+++.|+|.|.+.-.|.-..+. ..+. .++
T Consensus 115 i~~Tk~vv~~ah~-~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~ 193 (323)
T 2isw_A 115 VRITKEVVAYAHA-RSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAYKFKSESDIRLAI 193 (323)
T ss_dssp HHHHHHHHHHHHT-TTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCCC----CCCC
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccccccCCCCCcccccCH
Confidence 3445555555543 3666655542 221 0 0123344555567899999886666543322 1234 789
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
+.+++|++.+++|++.-|+=.-+++..+.++++|-+
T Consensus 194 ~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 194 DRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp HHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhccc
Confidence 999999999999999999887888888888877755
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.34 Score=41.47 Aligned_cols=96 Identities=14% Similarity=0.221 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHhhcC---CceEEEEECC-CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNL---NVPVSCKIRV-FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~---~~pvsvKiR~-g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
.+...+-|++++++- ++-|..++-. ....+++++=++.++++|++.|.+++. .+.+.++++.+.+
T Consensus 135 ~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd~i~~e~~-----------~~~~~~~~i~~~~ 203 (287)
T 3b8i_A 135 VEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGADGICLVGV-----------RDFAHLEAIAEHL 203 (287)
T ss_dssp HHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCSEEEEECC-----------CSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCCEEEecCC-----------CCHHHHHHHHHhC
Confidence 345556666666543 2334444422 123468889999999999999999873 2357889999999
Q ss_pred CccEEEc-CC---CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 80 RIPVLAN-GN---VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 80 ~ipvi~n-Gg---I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
++|++.. |+ ..|.++ |.+.|+..|..|-.++
T Consensus 204 ~~P~ii~~~g~~~~~~~~e----L~~lGv~~v~~~~~~~ 238 (287)
T 3b8i_A 204 HIPLMLVTYGNPQLRDDAR----LARLGVRVVVNGHAAY 238 (287)
T ss_dssp CSCEEEECTTCGGGCCHHH----HHHTTEEEEECCCHHH
T ss_pred CCCEEEeCCCCCCCCCHHH----HHHcCCcEEEEChHHH
Confidence 9998843 22 345433 4458999998875544
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=93.20 E-value=0.92 Score=39.10 Aligned_cols=96 Identities=10% Similarity=0.186 Sum_probs=63.8
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... . +..--.++.+.|.+++++||+
T Consensus 79 ~~v~~~~v~~~~grvpViaGvg~-~st~eai~la~~A~~~Gadavlv~~P~y~~-~--s~~~l~~~f~~va~a~~lPiil 154 (314)
T 3qze_A 79 IQVIRRVVDQVKGRIPVIAGTGA-NSTREAVALTEAAKSGGADACLLVTPYYNK-P--TQEGMYQHFRHIAEAVAIPQIL 154 (314)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC-C--CHHHHHHHHHHHHHHSCSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-C--CHHHHHHHHHHHHHhcCCCEEE
Confidence 45555555543 5888886542 356889999999999999999887643221 0 111235677888899999986
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 155 Yn~P~~tg~~l~~~~~~~La~~pnIvgi 182 (314)
T 3qze_A 155 YNVPGRTSCDMLPETVERLSKVPNIIGI 182 (314)
T ss_dssp EECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred EeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 44 555678888776653444444
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.16 Score=41.78 Aligned_cols=99 Identities=8% Similarity=0.037 Sum_probs=61.8
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
.+...++...+. +.-|++=.++.. .......+++..+++|++.+.+++. .-+.++.+++.++-.
T Consensus 93 ~~~~a~~~~~~~-~~~v~vLts~s~~~~~~~~~~~~a~~a~~~g~~GvV~sat------------~p~e~~~ir~~~~~~ 159 (222)
T 4dbe_A 93 SLDELKRYLDAN-SKNLYLVAVMSHEGWSTLFADYIKNVIREISPKGIVVGGT------------KLDHITQYRRDFEKM 159 (222)
T ss_dssp THHHHHHHHHHT-TCEEEEEEECSSTTCCCTTHHHHHHHHHHHCCSEEEECTT------------CHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhc-CCcEEEEEeCCCcchHHHHHHHHHHHHHHhCCCEEEECCC------------CHHHHHHHHHhCCCC
Confidence 344555554332 334554344422 1122367888889999998876441 124567777766546
Q ss_pred EEEcCCCCCHH-HHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHME-DVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~-da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++..+||+... +..++++ .|+|.+.+||+++..++
T Consensus 160 ~~vtPGI~~~g~tp~~a~~-~Gad~iVVGR~I~~A~d 195 (222)
T 4dbe_A 160 TIVSPGMGSQGGSYGDAVC-AGADYEIIGRSIYNAGN 195 (222)
T ss_dssp EEEECCBSTTSBCTTHHHH-HTCSEEEECHHHHTSSS
T ss_pred EEEcCCcccCccCHHHHHH-cCCCEEEECHHhcCCCC
Confidence 77889886321 3445564 79999999999998654
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.9 Score=39.19 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=63.8
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 79 r~~v~~~~v~~~~grvpViaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~lPii 154 (315)
T 3na8_A 79 WDEVVDFTLKTVAHRVPTIVSVSD-LTTAKTVRRAQFAESLGAEAVMVLPISYWK---LNEAEVFQHYRAVGEAIGVPVM 154 (315)
T ss_dssp HHHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHHHHHHHTTCSEEEECCCCSSC---CCHHHHHHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCcEE
Confidence 345666665543 5888886542 456889999999999999999987643221 0111235677888899999986
Q ss_pred -Ec-----CCCCCHHHHHHH-HHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKC-LEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~-l~~~gadgV 107 (230)
.| |---+++.+.++ -+...+-||
T Consensus 155 lYn~P~~tg~~l~~~~~~~L~a~~pnIvgi 184 (315)
T 3na8_A 155 LYNNPGTSGIDMSVELILRIVREVDNVTMV 184 (315)
T ss_dssp EEECHHHHSCCCCHHHHHHHHHHSTTEEEE
T ss_pred EEeCcchhCcCCCHHHHHHHHhcCCCEEEE
Confidence 44 444577777776 333444444
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.13 E-value=0.83 Score=38.99 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... . +..--.++.+.|.+++++||+
T Consensus 62 r~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~-~--~~~~l~~~f~~va~a~~lPii 137 (297)
T 3flu_A 62 HTAVIEAVVKHVAKRVPVIAGTGA-NNTVEAIALSQAAEKAGADYTLSVVPYYNK-P--SQEGIYQHFKTIAEATSIPMI 137 (297)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC-C--CHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHHHHHHHcCCCEEEECCCCCCC-C--CHHHHHHHHHHHHHhCCCCEE
Confidence 345566655543 5898886532 456899999999999999999887643221 0 111135677888899999986
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 138 lYn~P~~tg~~l~~~~~~~La~~pnivgi 166 (297)
T 3flu_A 138 IYNVPGRTVVSMTNDTILRLAEIPNIVGV 166 (297)
T ss_dssp EEECHHHHSSCCCHHHHHHHTTSTTEEEE
T ss_pred EEECCchhccCCCHHHHHHHHcCCCEEEE
Confidence 44 444577777776543334343
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.96 Score=39.02 Aligned_cols=96 Identities=20% Similarity=0.245 Sum_probs=64.1
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|.+-+..-.... . +..--+++.+.|.+++++||+
T Consensus 78 ~~v~~~~v~~~~grvpViaGvg~-~st~~ai~la~~A~~~Gadavlv~~P~y~~-~--~~~~l~~~f~~va~a~~lPiil 153 (315)
T 3si9_A 78 KRIIELCVEQVAKRVPVVAGAGS-NSTSEAVELAKHAEKAGADAVLVVTPYYNR-P--NQRGLYTHFSSIAKAISIPIII 153 (315)
T ss_dssp HHHHHHHHHHHTTSSCBEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC-C--CHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC-C--CHHHHHHHHHHHHHcCCCCEEE
Confidence 45555555543 5888886542 456889999999999999999887643221 0 111235677888888999986
Q ss_pred Ec-----CCCCCHHHHHHHHH-hhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~-~~gadgV 107 (230)
.| |---+++.+.++.+ ...+-||
T Consensus 154 Yn~P~~tg~~l~~~~~~~La~~~pnIvgi 182 (315)
T 3si9_A 154 YNIPSRSVIDMAVETMRDLCRDFKNIIGV 182 (315)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EeCchhhCCCCCHHHHHHHHhhCCCEEEE
Confidence 44 54457888877766 3444444
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.14 Score=44.39 Aligned_cols=85 Identities=11% Similarity=0.102 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|- +.+++.+.. ++.|+|
T Consensus 31 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~v~~~~v~~~~grvpViaGvg~-~t~~ai~la~~A~~~Gad 108 (316)
T 3e96_A 31 DWHHYKETVDRIVDNGIDVIVPCGNTSEFYA-LSLEEAKEEVRRTVEYVHGRALVVAGIGY-ATSTAIELGNAAKAAGAD 108 (316)
T ss_dssp CHHHHHHHHHHHHTTTCCEECTTSGGGTGGG-SCHHHHHHHHHHHHHHHTTSSEEEEEECS-SHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccc-CCHHHHHHHHHHHHHHhCCCCcEEEEeCc-CHHHHHHHHHHHHhcCCC
Confidence 5567888999999999999999887765321 11111224455555554 5898866443 666665543 347999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 109 avlv~~P~y~~~ 120 (316)
T 3e96_A 109 AVMIHMPIHPYV 120 (316)
T ss_dssp EEEECCCCCSCC
T ss_pred EEEEcCCCCCCC
Confidence 999987766544
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.89 Score=38.95 Aligned_cols=98 Identities=10% Similarity=0.170 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-cc
Q 026945 6 LVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IP 82 (230)
Q Consensus 6 ~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ip 82 (230)
-=.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.++++ +|
T Consensus 65 Er~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~---~s~~~l~~~f~~va~a~~~lP 140 (303)
T 2wkj_A 65 EREQVLEIVAEEAKGKIKLIAHVGC-VSTAESQQLAASAKRYGFDAVSAVTPFYYP---FSFEEHCDHYRAIIDSADGLP 140 (303)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEECCC-SSHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHHHHHHhCCCCEEEecCCCCCC---CCHHHHHHHHHHHHHhCCCCC
Confidence 3345666665543 5898887642 356889999999999999999887643211 011112566778888888 99
Q ss_pred EE-Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 83 VL-AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 83 vi-~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
|+ .| |---+++.+.++.+...+-||
T Consensus 141 iilYn~P~~tg~~l~~~~~~~La~~pnIvgi 171 (303)
T 2wkj_A 141 MVVYNIPALSGVKLTLDQINTLVTLPGVGAL 171 (303)
T ss_dssp EEEEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred EEEEeCccccCCCCCHHHHHHHhcCCCEEEE
Confidence 86 45 433578888777654444444
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.84 E-value=0.086 Score=45.35 Aligned_cols=87 Identities=20% Similarity=0.141 Sum_probs=56.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++.+.+.+ ++||++.-|-.+.+++.+.. ++.|+|
T Consensus 23 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 101 (300)
T 3eb2_A 23 RADVMGRLCDDLIQAGVHGLTPLGSTGEFAY-LGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGAD 101 (300)
T ss_dssp CHHHHHHHHHHHHHTTCSCBBTTSGGGTGGG-CCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccCccc-cCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 5567888999999999999999887765321 11111224455555544 58987543333444544333 357999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
+||+.-..+..|.
T Consensus 102 avlv~~P~y~~~~ 114 (300)
T 3eb2_A 102 GILAILEAYFPLK 114 (300)
T ss_dssp EEEEEECCSSCCC
T ss_pred EEEEcCCCCCCCC
Confidence 9999988877664
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=92.80 E-value=0.99 Score=38.41 Aligned_cols=96 Identities=14% Similarity=0.160 Sum_probs=63.1
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 58 ~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiil 133 (292)
T 3daq_A 58 ELILKTVIDLVDKRVPVIAGTGT-NDTEKSIQASIQAKALGADAIMLITPYYNK---TNQRGLVKHFEAIADAVKLPVVL 133 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEEE
Confidence 45555555543 5899887532 456889999999999999999887643211 0111235677888888899986
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 134 Yn~P~~tg~~l~~~~~~~La~~pnivgi 161 (292)
T 3daq_A 134 YNVPSRTNMTIEPETVEILSQHPYIVAL 161 (292)
T ss_dssp EECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred EecccccCCCCCHHHHHHHhcCCCEEEE
Confidence 44 545678888776653334343
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=1 Score=38.30 Aligned_cols=97 Identities=11% Similarity=0.108 Sum_probs=63.6
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 59 r~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPii 134 (293)
T 1f6k_A 59 KKEIFRIAKDEAKDQIALIAQVGS-VNLKEAVELGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGSNMI 134 (293)
T ss_dssp HHHHHHHHHHHHTTSSEEEEECCC-SCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHhCCCCeEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhCCCCEE
Confidence 345566665544 5888877643 356889999999999999999887643211 0111235677788888899986
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 135 lYn~P~~tg~~l~~~~~~~La~~pnIvgi 163 (293)
T 1f6k_A 135 VYSIPFLTGVNMGIEQFGELYKNPKVLGV 163 (293)
T ss_dssp EEECHHHHCCCCCHHHHHHHHTSTTEEEE
T ss_pred EEECccccCcCCCHHHHHHHhcCCCEEEE
Confidence 45 433478888777653444444
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.46 Score=41.08 Aligned_cols=101 Identities=18% Similarity=0.261 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CCC--C----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCC--CCCccc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VFP--N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG--KKFRAD 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g~--~----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~--~~~~~~ 68 (230)
.+..+++++.... .++.|-.-+- +|- | ..+..+..+-+++.|+|.|.+.-.|.-..+. ..+..+
T Consensus 114 i~~Tk~vv~~ah~-~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~Ld 192 (307)
T 3n9r_A 114 LELTSKVVKMAHN-AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLD 192 (307)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSSBCCSSSCCCC
T ss_pred HHHHHHHHHHHHH-cCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccccCCCCCCccC
Confidence 3455566665544 3666665542 221 0 0123344444566899999886665543321 124579
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
++.+++|++..++|++.-|+=.-|++..+.++++|-+
T Consensus 193 ~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 193 FERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGD 229 (307)
T ss_dssp HHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCc
Confidence 9999999888899999999988888998888887755
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=1.1 Score=39.10 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 86 r~~vi~~~ve~~~grvpViaGvg~-~st~eai~la~~A~~~Gadavlv~~P~Y~~---~s~~~l~~~f~~VA~a~~lPii 161 (343)
T 2v9d_A 86 RKAIARFAIDHVDRRVPVLIGTGG-TNARETIELSQHAQQAGADGIVVINPYYWK---VSEANLIRYFEQVADSVTLPVM 161 (343)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCS-SCHHHHHHHHHHHHHHTCSEEEEECCSSSC---CCHHHHHHHHHHHHHTCSSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566665544 5888877643 456889999999999999999887643211 0111235677788888999986
Q ss_pred -Ec-----CCCCCHHHHHHHH-HhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCL-EETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l-~~~gadgV 107 (230)
.| |---+++.+.++. +...+-||
T Consensus 162 lYn~P~~tg~~l~~e~~~~La~~~pnIvgi 191 (343)
T 2v9d_A 162 LYNFPALTGQDLTPALVKTLADSRSNIIGI 191 (343)
T ss_dssp EEECHHHHSSCCCHHHHHHHHHHCTTEEEE
T ss_pred EEeCchhcCcCCCHHHHHHHHHhCCCEEEE
Confidence 44 4334788887776 43344444
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=92.69 E-value=0.54 Score=39.92 Aligned_cols=85 Identities=19% Similarity=0.158 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHH--HHHHhhCCcE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQ--KCLEETGCEG 106 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~--~~l~~~gadg 106 (230)
.|.+....+++.+.+.|++.|.+.|-|.+... .+..-..+.++.+.+.++- |+ +.|+..+.+.++ +..++.|+|+
T Consensus 16 iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~-Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~Gada 93 (286)
T 2r91_A 16 LDPELFANHVKNITSKGVDVVFVAGTTGLGPA-LSLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGAEA 93 (286)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEETSTTTTGGG-SCHHHHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTTCSE
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcCCCE
Confidence 36677889999999999999999998776421 1111123455666666544 55 556655444433 2223479999
Q ss_pred EEEehhhhhC
Q 026945 107 VLSAESLLEN 116 (230)
Q Consensus 107 VmigR~~l~n 116 (230)
+|+.-..+..
T Consensus 94 vlv~~P~y~~ 103 (286)
T 2r91_A 94 VASLPPYYFP 103 (286)
T ss_dssp EEECCSCSST
T ss_pred EEEcCCcCCC
Confidence 9999887766
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.56 Score=40.00 Aligned_cols=85 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHH---HhhCCcE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l---~~~gadg 106 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..=..+.++.+.+.++- |+ +.|+..+ +++.+.. ++.|+|+
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~-Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t-~~ai~la~~A~~~Gada 94 (293)
T 1w3i_A 18 DKEKLKIHAENLIRKGIDKLFVNGTTGLGPS-LSPEEKLENLKAVYDVTNK-IIFQVGGLNL-DDAIRLAKLSKDFDIVG 94 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHTTCSC-EEEECCCSCH-HHHHHHHHHGGGSCCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHcCC-EEEecCCCCH-HHHHHHHHHHHhcCCCE
Confidence 5566788999999999999999998776421 1111123445555555544 55 5566544 4444333 3479999
Q ss_pred EEEehhhhhC-Cc
Q 026945 107 VLSAESLLEN-PA 118 (230)
Q Consensus 107 VmigR~~l~n-P~ 118 (230)
||+....+.. |.
T Consensus 95 vlv~~P~y~~~~s 107 (293)
T 1w3i_A 95 IASYAPYYYPRMS 107 (293)
T ss_dssp EEEECCCSCSSCC
T ss_pred EEEcCCCCCCCCC
Confidence 9999887766 53
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=92.59 E-value=1.1 Score=38.33 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=62.5
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|.+-+..-... + .+..--.++.+.|.+++++||+
T Consensus 71 r~~v~~~~~~~~~grvpviaGvg~-~st~~ai~la~~A~~~Gadavlv~~P~y~-~--~~~~~l~~~f~~ia~a~~lPii 146 (304)
T 3cpr_A 71 KLELLKAVREEVGDRAKLIAGVGT-NNTRTSVELAEAAASAGADGLLVVTPYYS-K--PSQEGLLAHFGAIAAATEVPIC 146 (304)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECCC-SCHHHHHHHHHHHHHTTCSEEEEECCCSS-C--CCHHHHHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEecCCC-CCHHHHHHHHHHHHhcCCCEEEECCCCCC-C--CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566665543 5888877642 45688999999999999999988753221 0 0111125677788888999986
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 147 lYn~P~~tg~~l~~~~~~~La~~pnIvgi 175 (304)
T 3cpr_A 147 LYDIPGRSGIPIESDTMRRLSELPTILAV 175 (304)
T ss_dssp EEECHHHHSSCCCHHHHHHHTTSTTEEEE
T ss_pred EEeCccccCcCCCHHHHHHHHcCCCEEEE
Confidence 45 433478877776543333333
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=92.58 E-value=1.5 Score=37.62 Aligned_cols=99 Identities=11% Similarity=0.075 Sum_probs=63.7
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.....+..+..--.++.+.|.+++++||+
T Consensus 64 ~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiil 142 (309)
T 3fkr_A 64 DVLTRTILEHVAGRVPVIVTTSH-YSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIAIPIMV 142 (309)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCC-chHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 45566655543 5899887742 4568899999999999999998865322100000111235677888898899986
Q ss_pred Ec----CCCCCHHHHHHHHH-hhCCcEE
Q 026945 85 AN----GNVRHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~n----GgI~s~~da~~~l~-~~gadgV 107 (230)
.| |---+++.+.++.+ ..++-||
T Consensus 143 Yn~P~tg~~l~~~~~~~La~~~pnIvgi 170 (309)
T 3fkr_A 143 QDAPASGTALSAPFLARMAREIEQVAYF 170 (309)
T ss_dssp EECGGGCCCCCHHHHHHHHHHSTTEEEE
T ss_pred EeCCCCCCCCCHHHHHHHHhhCCCEEEE
Confidence 44 54457887777764 2444444
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=92.55 E-value=0.46 Score=40.43 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCceEEEEECCCC----------------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFP----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~----------------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+.+.|+++.++ ++||..-+.+.+ ..+++++=++.++++|++.|.+.+. + -+
T Consensus 120 ~~~~I~al~~a-gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----------p--~~ 186 (275)
T 1o66_A 120 MAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV----------L--AE 186 (275)
T ss_dssp GHHHHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESC----------C--HH
T ss_pred HHHHHHHHHHc-CCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEecC----------C--HH
Confidence 45566666554 789874444321 1356778888999999999998663 1 26
Q ss_pred HHHHHHhhCCccEEEcC
Q 026945 71 AIKAVKNALRIPVLANG 87 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nG 87 (230)
.+++|.+.+++|+|+-|
T Consensus 187 ~a~~it~~l~iP~igIG 203 (275)
T 1o66_A 187 LAKKVTETVSCPTIGIG 203 (275)
T ss_dssp HHHHHHHHCSSCEEEES
T ss_pred HHHHHHHhCCCCEEEEC
Confidence 78899999999999865
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.47 Score=40.82 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=63.9
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---CCCC------CcccHHHHHHHHhhCCccEEE--
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---DGKK------FRADWNAIKAVKNALRIPVLA-- 85 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---~~~~------~~~~~~~i~~i~~~~~ipvi~-- 85 (230)
..+.|+.+-+- |.+.+...+.++.++++ +|.|.+|......+ .++. +..-++.++.+++.+++||.+
T Consensus 56 ~~~~~~~~QL~-g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKi 133 (318)
T 1vhn_A 56 PHERNVAVQIF-GSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKT 133 (318)
T ss_dssp TTCTTEEEEEE-CSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred cCCCeEEEEeC-CCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 34778888886 66778889999999999 99999997544311 1121 122467788888888889874
Q ss_pred cCCCCC--HHHHHHHHHhhCCcEEEEe
Q 026945 86 NGNVRH--MEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 86 nGgI~s--~~da~~~l~~~gadgVmig 110 (230)
..|+.. ..+..+.+++.|+|+|.+-
T Consensus 134 r~G~~~~~~~~~a~~l~~~G~d~i~v~ 160 (318)
T 1vhn_A 134 RLGWEKNEVEEIYRILVEEGVDEVFIH 160 (318)
T ss_dssp ESCSSSCCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCChHHHHHHHHHHHHhCCCEEEEc
Confidence 344432 3245566667999998764
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=92.22 E-value=1.8 Score=36.79 Aligned_cols=101 Identities=13% Similarity=0.055 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-- 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-- 79 (230)
.+-=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... . .+..--+++.+.|.+++
T Consensus 55 ~~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~-~-~s~~~l~~~f~~va~a~p~ 131 (294)
T 3b4u_A 55 SRERQAILSSFIAAGIAPSRIVTGVLV-DSIEDAADQSAEALNAGARNILLAPPSYFK-N-VSDDGLFAWFSAVFSKIGK 131 (294)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEECC-SSHHHHHHHHHHHHHTTCSEEEECCCCSSC-S-CCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEeCCC-ccHHHHHHHHHHHHhcCCCEEEEcCCcCCC-C-CCHHHHHHHHHHHHHhcCC
Confidence 334456777777665 4898887753 356889999999999999999887543211 0 01112356778888888
Q ss_pred -CccEE-Ec-----CCCCCHHHHHHHH-HhhC-CcEE
Q 026945 80 -RIPVL-AN-----GNVRHMEDVQKCL-EETG-CEGV 107 (230)
Q Consensus 80 -~ipvi-~n-----GgI~s~~da~~~l-~~~g-adgV 107 (230)
++||+ .| |---+++.+.++. +... +-||
T Consensus 132 ~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgi 168 (294)
T 3b4u_A 132 DARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGV 168 (294)
T ss_dssp TCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEE
T ss_pred CCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEE
Confidence 89986 45 4335788888776 4334 4444
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=92.19 E-value=1.4 Score=38.63 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=63.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-C
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R 80 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ 80 (230)
.|.++ ++.+.+ .+.||.+|.-+. +.++....++.+.+.|.+.+.+|+-+... ......|+..|..+++.. +
T Consensus 123 ~N~pL----L~~va~-~gKPviLstGms-tl~Ei~~Ave~i~~~g~~viLlhC~s~YP--t~~~~~nL~aI~~Lk~~fp~ 194 (350)
T 3g8r_A 123 TDWPL----LERIAR-SDKPVVASTAGA-RREDIDKVVSFMLHRGKDLTIMHCVAEYP--TPDDHLHLARIKTLRQQYAG 194 (350)
T ss_dssp TCHHH----HHHHHT-SCSCEEEECTTC-CHHHHHHHHHHHHTTTCCEEEEECCCCSS--CCGGGCCTTHHHHHHHHCTT
T ss_pred cCHHH----HHHHHh-hCCcEEEECCCC-CHHHHHHHHHHHHHcCCCEEEEecCCCCC--CCcccCCHHHHHHHHHHCCC
Confidence 44555 444433 689999998875 77888888888888898877778743211 112346899999999999 7
Q ss_pred ccEEEc----CCCCCHHHHHHHHHhhCCc
Q 026945 81 IPVLAN----GNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 81 ipvi~n----GgI~s~~da~~~l~~~gad 105 (230)
+||..+ |+.. .-+..+.. .||+
T Consensus 195 lpVG~SdHt~g~~~--~~~~AAvA-lGA~ 220 (350)
T 3g8r_A 195 VRIGYSTHEDPDLM--EPIMLAVA-QGAT 220 (350)
T ss_dssp SEEEEEECCCSSCC--HHHHHHHH-TTCC
T ss_pred CCEEcCCCCCCCcc--HHHHHHHH-cCCC
Confidence 999776 3332 22234454 6886
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=92.16 E-value=1.2 Score=37.78 Aligned_cols=96 Identities=14% Similarity=0.227 Sum_probs=63.3
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~ia~a~~lPiil 132 (291)
T 3tak_A 57 TQVIKEIIRVANKRIPIIAGTGA-NSTREAIELTKAAKDLGADAALLVTPYYNK---PTQEGLYQHYKAIAEAVELPLIL 132 (291)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHhCCCCeEEEeCCC-CCHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEEE
Confidence 45566555543 5888886542 356889999999999999999887643221 0111235677888899999986
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 133 Yn~P~~tg~~l~~~~~~~La~~pnivgi 160 (291)
T 3tak_A 133 YNVPGRTGVDLSNDTAVRLAEIPNIVGI 160 (291)
T ss_dssp EECHHHHSCCCCHHHHHHHTTSTTEEEE
T ss_pred EecccccCCCCCHHHHHHHHcCCCEEEE
Confidence 43 444578877776643344444
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=92.16 E-value=0.84 Score=39.41 Aligned_cols=82 Identities=17% Similarity=0.170 Sum_probs=57.1
Q ss_pred CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEc---CC--
Q 026945 19 NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLAN---GN-- 88 (230)
Q Consensus 19 ~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~n---Gg-- 88 (230)
+.++.+--|.. ...+++++=++.+.++|+|.|.+++.+ +.+.++++.+.++ +|+.+| |+
T Consensus 160 ~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~-----------~~~~~~~i~~~~~~~Pv~~n~~~~g~~ 228 (307)
T 3lye_A 160 RSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGFR-----------SKEQAAAAVAALAPWPLLLNSVENGHS 228 (307)
T ss_dssp TCCCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS-----------CHHHHHHHHHHHTTSCBEEEEETTSSS
T ss_pred CCCeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCCC-----------CHHHHHHHHHHccCCceeEEeecCCCC
Confidence 55666666653 235678888999999999999998742 3477888888875 888765 33
Q ss_pred -CCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 89 -VRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 89 -I~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
..|.++ |++.|+..|+.+-.++.
T Consensus 229 p~~t~~e----L~~lGv~~v~~~~~~~r 252 (307)
T 3lye_A 229 PLITVEE----AKAMGFRIMIFSFATLA 252 (307)
T ss_dssp CCCCHHH----HHHHTCSEEEEETTTHH
T ss_pred CCCCHHH----HHHcCCeEEEEChHHHH
Confidence 234433 44579999988765543
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=92.09 E-value=0.82 Score=38.90 Aligned_cols=90 Identities=14% Similarity=0.103 Sum_probs=60.2
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 56 r~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPii 131 (292)
T 2ojp_A 56 HADVVMMTLDLADGRIPVIAGTGA-NATAEAISLTQRFNDSGIVGCLTVTPYYNR---PSQEGLYQHFKAIAEHTDLPQI 131 (292)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHTTTSSCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEecCC-ccHHHHHHHHHHHHhcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566655543 5888877643 356889999999999999999887643211 0111225677788888899986
Q ss_pred -Ec-----CCCCCHHHHHHHHH
Q 026945 85 -AN-----GNVRHMEDVQKCLE 100 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~ 100 (230)
.| |---+++.+.++.+
T Consensus 132 lYn~P~~tg~~l~~~~~~~La~ 153 (292)
T 2ojp_A 132 LYNVPSRTGCDLLPETVGRLAK 153 (292)
T ss_dssp EECCHHHHSCCCCHHHHHHHHT
T ss_pred EEeCcchhccCCCHHHHHHHHc
Confidence 44 43347888877664
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=92.00 E-value=0.55 Score=39.94 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-EcCCCCCHHHHHHHH---HhhCCcE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-ANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi-~nGgI~s~~da~~~l---~~~gadg 106 (230)
|.+....+++.+.+.|++.|.+.|-|.+... .+..=..+.++.+.+.++- |+ +.|+..+ +++.+.. ++.|+|+
T Consensus 18 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~-Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t-~~ai~la~~A~~~Gada 94 (288)
T 2nuw_A 18 NVDALKTHAKNLLEKGIDAIFVNGTTGLGPA-LSKDEKRQNLNALYDVTHK-LIFQVGSLNL-NDVMELVKFSNEMDILG 94 (288)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEETSTTTTGGG-SCHHHHHHHHHHHTTTCSC-EEEECCCSCH-HHHHHHHHHHHTSCCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhh-CCHHHHHHHHHHHHHHhCC-eEEeeCCCCH-HHHHHHHHHHHhcCCCE
Confidence 5566788999999999999999998776421 1111122344444554433 55 4555544 4444333 3479999
Q ss_pred EEEehhhhhC-Cc
Q 026945 107 VLSAESLLEN-PA 118 (230)
Q Consensus 107 VmigR~~l~n-P~ 118 (230)
||+.-..+.. |.
T Consensus 95 vlv~~P~y~~~~s 107 (288)
T 2nuw_A 95 VSSHSPYYFPRLP 107 (288)
T ss_dssp EEECCCCSSCSCC
T ss_pred EEEcCCcCCCCCC
Confidence 9998887766 53
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.94 Score=37.34 Aligned_cols=98 Identities=22% Similarity=0.320 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCCh--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNL--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-- 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-- 78 (230)
|.+.+.+++++.. +.|+|. -|..+.. .+..+-.+.|.+.|++.|-=||....+ +..-..+.++++.+.
T Consensus 105 D~~~~~~Li~~a~---~~~vTF-HRAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~----~a~~g~~~L~~Lv~~a~ 176 (224)
T 2bdq_A 105 DTEAIEQLLPATQ---GLPLVF-HMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGE----PIIENIKHIKALVEYAN 176 (224)
T ss_dssp CHHHHHHHHHHHT---TCCEEE-CGGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCC----CGGGGHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhC---CCeEEE-ECchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCC----cHHHHHHHHHHHHHhhC
Confidence 5566777776553 577776 3443222 455667888889999999877754321 112345777776553
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
-++-|++.|||+ .+.+.++++.+|++.+-.
T Consensus 177 ~ri~Im~GgGV~-~~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 177 NRIEIMVGGGVT-AENYQYICQETGVKQAHG 206 (224)
T ss_dssp TSSEEEECSSCC-TTTHHHHHHHHTCCEEEE
T ss_pred CCeEEEeCCCCC-HHHHHHHHHhhCCCEEcc
Confidence 257888999995 677778887899998875
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=91.96 E-value=2.4 Score=35.79 Aligned_cols=95 Identities=13% Similarity=0.162 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEECCC-C-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 4 LPLVKSLVEKLALNLNV-PVSCKIRVF-P-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~-pvsvKiR~g-~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
.+.+...+++|+..++. ||.+-+-.| . +.+++++.+.++.++|++.+.+-+.. --.+.|+.+.+ .+
T Consensus 62 ldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklEgg~----------e~~~~I~al~~-ag 130 (264)
T 1m3u_A 62 VADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGGE----------WLVETVQMLTE-RA 130 (264)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECCCSG----------GGHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEECCcH----------HHHHHHHHHHH-CC
Confidence 34556667778777764 566665443 1 56778888889989999999986641 12466777765 47
Q ss_pred ccEEE-----------cCCC----CCHHHHHH------HHHhhCCcEEEE
Q 026945 81 IPVLA-----------NGNV----RHMEDVQK------CLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~-----------nGgI----~s~~da~~------~l~~~gadgVmi 109 (230)
|||++ .||. ++.+.+.+ .+++.|||+|.+
T Consensus 131 ipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivl 180 (264)
T 1m3u_A 131 VPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVL 180 (264)
T ss_dssp CCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEE
Confidence 99982 4565 35443333 334589998876
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=91.96 E-value=2.1 Score=36.66 Aligned_cols=101 Identities=14% Similarity=0.078 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
+-=.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+|++-+..-.... ...+..--+++.+.|.+++++|
T Consensus 67 ~Er~~v~~~~~~~~~gr~pviaGvg~-~~t~~ai~la~~A~~~Gadavlv~~P~y~~-~~~s~~~l~~~f~~ia~a~~lP 144 (307)
T 3s5o_A 67 SERLEVVSRVRQAMPKNRLLLAGSGC-ESTQATVEMTVSMAQVGADAAMVVTPCYYR-GRMSSAALIHHYTKVADLSPIP 144 (307)
T ss_dssp HHHHHHHHHHHHTSCTTSEEEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCTTG-GGCCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHcCCCCcEEEecCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCcCC-CCCCHHHHHHHHHHHHhhcCCC
Confidence 34456777777765 5888876532 466889999999999999999886532211 0001112356778888889999
Q ss_pred EE-Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 83 VL-AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 83 vi-~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
|+ .| |---+++.+.++.+...+-||
T Consensus 145 iilYn~P~~tg~~l~~~~~~~La~~pnIvgi 175 (307)
T 3s5o_A 145 VVLYSVPANTGLDLPVDAVVTLSQHPNIVGM 175 (307)
T ss_dssp EEEEECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred EEEEeCCcccCCCCCHHHHHHHhcCCCEEEE
Confidence 86 44 333478888776653444444
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.90 E-value=0.92 Score=38.49 Aligned_cols=108 Identities=9% Similarity=0.005 Sum_probs=69.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCC--cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKF--RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~--~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
+.++...+++.+.++|++.|.+..-... .+.+ ...|+.++.+++..++|+.+-. .+.+++.++++ +|++.||
T Consensus 24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~---~~~p~~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~-~G~~~V~ 97 (295)
T 1ydn_A 24 PTADKIALINRLSDCGYARIEATSFVSP---KWVPQLADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAA-AHADEIA 97 (295)
T ss_dssp CHHHHHHHHHHHTTTTCSEEEEEECSCT---TTCGGGTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHH-TTCSEEE
T ss_pred CHHHHHHHHHHHHHcCcCEEEEccCcCc---cccccccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHH-CCCCEEE
Confidence 4578899999999999999998643211 1111 1368888888765577875544 67899999887 8999999
Q ss_pred EehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhhCC
Q 026945 109 SAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYP 158 (230)
Q Consensus 109 igR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~~~ 158 (230)
+--+. -..+.+.+. ..+..+.++.+.+-++++..+|
T Consensus 98 i~~~~---S~~h~~~~~-----------~~~~~e~~~~~~~~v~~a~~~G 133 (295)
T 1ydn_A 98 VFISA---SEGFSKANI-----------NCTIAESIERLSPVIGAAINDG 133 (295)
T ss_dssp EEEES---CHHHHHHHT-----------SSCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEec---CHHHHHHHc-----------CCCHHHHHHHHHHHHHHHHHcC
Confidence 84211 111222110 1234456666666677776655
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.81 E-value=0.51 Score=41.36 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH---HhhCCcEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL---EETGCEGV 107 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l---~~~gadgV 107 (230)
|.+....+++.+.+.|++.|.+-|-|.+... .+..-..+.++. .-.-++|||+.-|=.+.+++.+.. ++.|+|+|
T Consensus 45 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~-Ls~eEr~~vi~~-~~~grvpViaGvg~~st~eai~la~~A~~~Gadav 122 (344)
T 2hmc_A 45 DFDALVRKGKELIADGMSAVVYCGSMGDWPL-LTDEQRMEGVER-LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGL 122 (344)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEESSGGGTGGG-SCHHHHHHHHHH-HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccCcChhh-CCHHHHHHHHHH-HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEE
Confidence 4566788999999999999999997766321 111101122222 222369998654434444444333 34799999
Q ss_pred EEehhhhhC
Q 026945 108 LSAESLLEN 116 (230)
Q Consensus 108 migR~~l~n 116 (230)
|+.-..+..
T Consensus 123 lv~~P~y~~ 131 (344)
T 2hmc_A 123 MVIPRVLSR 131 (344)
T ss_dssp EECCCCSSS
T ss_pred EECCCccCC
Confidence 999887766
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.77 E-value=3.1 Score=34.22 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=67.8
Q ss_pred HHHHh---hcCCceEEEEECC-CC----Ch---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 11 VEKLA---LNLNVPVSCKIRV-FP----NL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 11 v~~v~---~~~~~pvsvKiR~-g~----~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
++.++ +.+++||-|=||. +- +. +...+-++.+.++|++.+.+-.-|.+ +..|.+.++++.+..
T Consensus 43 i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~d------g~iD~~~~~~Li~~a 116 (224)
T 2bdq_A 43 IKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLGILTSN------NHIDTEAIEQLLPAT 116 (224)
T ss_dssp HHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC------CCcCHHHHHHHHHHh
Confidence 44454 6678999999987 21 22 23456677889999999999877654 257999999887653
Q ss_pred -CccEEEcCC---C--CCHHHHHHHHHhhCCcEEEE
Q 026945 80 -RIPVLANGN---V--RHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 -~ipvi~nGg---I--~s~~da~~~l~~~gadgVmi 109 (230)
+.|+...=- + .++..+.+.|.+.|++.|.-
T Consensus 117 ~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILT 152 (224)
T 2bdq_A 117 QGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILL 152 (224)
T ss_dssp TTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECchhccCCcCHHHHHHHHHHcCCCEEEC
Confidence 688876543 3 67788877777789998864
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=91.71 E-value=0.83 Score=39.84 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE-ecCCC---CCcCCCCCcccHHHHHHHHhhC-CccEEEcC--CCCCHHHHHHHHHhhC
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAV-HGRTR---DEKDGKKFRADWNAIKAVKNAL-RIPVLANG--NVRHMEDVQKCLEETG 103 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~v-h~rt~---~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nG--gI~s~~da~~~l~~~g 103 (230)
+.++.+++++.|.++|++.|.+ |+... +-..+.....+|+.++++++.. ++|+.+=+ +....++++++.+ +|
T Consensus 28 ~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~-aG 106 (345)
T 1nvm_A 28 TLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQ-AG 106 (345)
T ss_dssp CHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHH-HT
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHh-CC
Confidence 4578899999999999999999 33210 1001222234799999998764 56766442 4556888888886 89
Q ss_pred CcEEEEe
Q 026945 104 CEGVLSA 110 (230)
Q Consensus 104 adgVmig 110 (230)
+|+|-|.
T Consensus 107 vd~v~I~ 113 (345)
T 1nvm_A 107 ARVVRVA 113 (345)
T ss_dssp CCEEEEE
T ss_pred cCEEEEE
Confidence 9999885
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=91.65 E-value=2.2 Score=36.68 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCC-CEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGC-SLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~-~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
+--.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|+ |.+-+..-.... . +..--.++.+.|.+++++
T Consensus 60 ~Er~~v~~~~~~~~~grvpViaGvg~-~~t~~ai~la~~A~~~Ga~davlv~~P~y~~-~--s~~~l~~~f~~va~a~~l 135 (311)
T 3h5d_A 60 DEELELFAAVQKVVNGRVPLIAGVGT-NDTRDSIEFVKEVAEFGGFAAGLAIVPYYNK-P--SQEGMYQHFKAIADASDL 135 (311)
T ss_dssp HHHHHHHHHHHHHSCSSSCEEEECCC-SSHHHHHHHHHHHHHSCCCSEEEEECCCSSC-C--CHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHHhCCCCcEEEeCCC-cCHHHHHHHHHHHHhcCCCcEEEEcCCCCCC-C--CHHHHHHHHHHHHHhCCC
Confidence 33456677776654 5899886532 356889999999999996 999887643221 0 111235677888888899
Q ss_pred cEE-Ec-----CCCCCHHHHHHHHHhhCC
Q 026945 82 PVL-AN-----GNVRHMEDVQKCLEETGC 104 (230)
Q Consensus 82 pvi-~n-----GgI~s~~da~~~l~~~ga 104 (230)
||+ .| |---+++.+.++.+...+
T Consensus 136 PiilYn~P~~tg~~l~~~~~~~La~~pnI 164 (311)
T 3h5d_A 136 PIIIYNIPGRVVVELTPETMLRLADHPNI 164 (311)
T ss_dssp CEEEEECHHHHSSCCCHHHHHHHHTSTTE
T ss_pred CEEEEecccccCCCCCHHHHHHHhcCCCE
Confidence 986 44 544578887776653333
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=1.1 Score=39.06 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC---------C--CCc-CCCCCcc------cHHHHHHHHhhCCccEE--EcC------
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRT---------R--DEK-DGKKFRA------DWNAIKAVKNALRIPVL--ANG------ 87 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt---------~--~~~-~~~~~~~------~~~~i~~i~~~~~ipvi--~nG------ 87 (230)
+..+.|+.+.++|.|.|.||+-. . .++ ..|.|.. -.+.++.|++.++.||. .+.
T Consensus 145 ~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~ 224 (340)
T 3gr7_A 145 AFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPD 224 (340)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTT
T ss_pred HHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCC
Confidence 45567778889999999999752 1 111 1122222 14677888888888876 332
Q ss_pred C--CCCHHHHHHHHHhhCCcEEEEehh
Q 026945 88 N--VRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 88 g--I~s~~da~~~l~~~gadgVmigR~ 112 (230)
| +.+...+.+.+++.|+|.+-+..|
T Consensus 225 g~~~~~~~~la~~L~~~Gvd~i~vs~g 251 (340)
T 3gr7_A 225 GLTAKDYVPYAKRMKEQGVDLVDVSSG 251 (340)
T ss_dssp SCCGGGHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 2 334555667777899999988543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.47 E-value=1.5 Score=37.51 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=61.6
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ .+||.+-+-. .+..+++++++.++++|+|.+-+..-.... .+..--.++.+.|.+++++||+
T Consensus 60 ~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~~~~~l~~~f~~va~a~~lPiil 135 (300)
T 3eb2_A 60 EAVVRATIEAAQRRVPVVAGVAS-TSVADAVAQAKLYEKLGADGILAILEAYFP---LKDAQIESYFRAIADAVEIPVVI 135 (300)
T ss_dssp HHHHHHHHHHHTTSSCBEEEEEE-SSHHHHHHHHHHHHHHTCSEEEEEECCSSC---CCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHHCCCCEEE
Confidence 45566555543 5788886642 356889999999999999999887643221 0111235677888888999986
Q ss_pred Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 136 Yn~P~~tg~~l~~~~~~~La~~pnIvgi 163 (300)
T 3eb2_A 136 YTNPQFQRSDLTLDVIARLAEHPRIRYI 163 (300)
T ss_dssp EECTTTCSSCCCHHHHHHHHTSTTEEEE
T ss_pred EECccccCCCCCHHHHHHHHcCCCEEEE
Confidence 44 333467777666433333333
|
| >3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=91.41 E-value=2.2 Score=38.37 Aligned_cols=96 Identities=9% Similarity=0.043 Sum_probs=65.2
Q ss_pred hHHHHHHH-HHHhhcC---CceEEEEECCC--------------CChHHHHHHHHH-HHHcCCCEEEEecCCCCCcCCCC
Q 026945 4 LPLVKSLV-EKLALNL---NVPVSCKIRVF--------------PNLQDTIKYAKM-LEDAGCSLLAVHGRTRDEKDGKK 64 (230)
Q Consensus 4 p~~~~eiv-~~v~~~~---~~pvsvKiR~g--------------~~~~~~~~~a~~-l~~~G~~~i~vh~rt~~~~~~~~ 64 (230)
++...+.+ ++++++- ++.+.+-..-. ++.++++++.+. +++.++.+|. + ..
T Consensus 217 ~~e~l~~i~~Air~aGy~~dv~l~vD~~ase~~~~g~y~l~~~~~t~~eai~~~~~ll~~y~i~~IE-------d--Pl- 286 (417)
T 3qn3_A 217 NTEPIDLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPICSIE-------D--GL- 286 (417)
T ss_dssp SSHHHHHHHHHHHHTTCTTTEEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEE-------S--SS-
T ss_pred HHHHHHHHHHHHHHcCCCCCceEEEECCchhhccCCeeecCCCccCHHHHHHHHHHHHhhcceeEEe-------c--CC-
Confidence 44445555 7887761 34444433221 245778888887 7888877765 2 11
Q ss_pred CcccHHHHHHHHhhC--CccEEEcCCCCC-HHHHHHHHHhhCCcEEEE
Q 026945 65 FRADWNAIKAVKNAL--RIPVLANGNVRH-MEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~--~ipvi~nGgI~s-~~da~~~l~~~gadgVmi 109 (230)
.+-||+..+++++.+ ++||++.=-+.| +.++.+.++...||.|.+
T Consensus 287 ~~dD~e~~~~L~~~~g~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~i 334 (417)
T 3qn3_A 287 AENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLI 334 (417)
T ss_dssp CTTCHHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEE
T ss_pred CcccHHHHHHHHHhhCCCCceecCCcccCCHHHHHHHHHhCCCCEEEe
Confidence 245899999999988 589876444566 999999998778898876
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.25 E-value=2.4 Score=36.13 Aligned_cols=108 Identities=17% Similarity=0.117 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhhcCCceEEEEECC--C------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRV--F------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~--g------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
+.+.++++.+++. ++.|.+-+.. + .+.+...++++.+.++|++.|.+..-... ..+....+.++.++
T Consensus 124 ~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~----~~P~~~~~lv~~l~ 198 (302)
T 2ftp_A 124 ERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV----GTAGATRRLIEAVA 198 (302)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSC----CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----cCHHHHHHHHHHHH
Confidence 4455666666553 5555443322 2 25678999999999999999999742221 22334578889999
Q ss_pred hhC-CccEEEcC--CCCC-HHHHHHHHHhhCCcEEEEehhhhhC-Cc
Q 026945 77 NAL-RIPVLANG--NVRH-MEDVQKCLEETGCEGVLSAESLLEN-PA 118 (230)
Q Consensus 77 ~~~-~ipvi~nG--gI~s-~~da~~~l~~~gadgVmigR~~l~n-P~ 118 (230)
+.+ ++|+..-| |... ...+..+++ .|++.|=..=+=++. |+
T Consensus 199 ~~~~~~~l~~H~Hn~~Gla~An~laAv~-aGa~~vd~tv~GlG~cp~ 244 (302)
T 2ftp_A 199 SEVPRERLAGHFHDTYGQALANIYASLL-EGIAVFDSSVAGLGGCPY 244 (302)
T ss_dssp TTSCGGGEEEEEBCTTSCHHHHHHHHHH-TTCCEEEEBGGGCCBCGG
T ss_pred HhCCCCeEEEEeCCCccHHHHHHHHHHH-hCCCEEEecccccCCCCC
Confidence 888 58998777 5433 455566775 899988776555554 54
|
| >3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae} | Back alignment and structure |
|---|
Probab=91.23 E-value=1.8 Score=39.34 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=63.9
Q ss_pred HHHHH-HHHHHhhc---C--CceEEEEECC------------------CCChHHHHHHHHH-HHHcCCCEEEEecCCCCC
Q 026945 5 PLVKS-LVEKLALN---L--NVPVSCKIRV------------------FPNLQDTIKYAKM-LEDAGCSLLAVHGRTRDE 59 (230)
Q Consensus 5 ~~~~e-iv~~v~~~---~--~~pvsvKiR~------------------g~~~~~~~~~a~~-l~~~G~~~i~vh~rt~~~ 59 (230)
+...+ +.++++++ . ++.+.+-... .++..+++++++. +++.++.+|. +
T Consensus 240 ~e~l~~i~~AIr~agy~~G~dv~l~vD~aase~~~~~~g~Y~l~~~~~~~t~~eai~~~~~lle~y~i~~IE-------d 312 (449)
T 3uj2_A 240 EEAIEYILEAVKLAGYEPGRDFVLAMDAASSEWKGEKKGEYILPKCKRKFASEELVAHWKSLCERYPIVSIE-------D 312 (449)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGCBCSSTTEEECTTTCCEEEHHHHHHHHHHHHHHSCEEEEE-------S
T ss_pred HHHHHHHHHHHHHhccccCCceEEEEEcchhhhccccCceeeccCcccccCHHHHHHHHHHHHHhcCceEEE-------C
Confidence 33344 44788877 5 4566655421 1345678888875 8888877775 2
Q ss_pred cCCCCCcccHHHHHHHHhhC--CccEEEcCCC-C-CHHHHHHHHHhhCCcEEEE
Q 026945 60 KDGKKFRADWNAIKAVKNAL--RIPVLANGNV-R-HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 60 ~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI-~-s~~da~~~l~~~gadgVmi 109 (230)
.. .+-||+..+++++.+ ++||++ ++. . ++.++.+.++...||.|.+
T Consensus 313 --Pl-~~dD~eg~~~L~~~~~~~ipI~g-DE~~~tn~~~~~~~i~~~a~d~i~i 362 (449)
T 3uj2_A 313 --GL-DEEDWEGWQYMTRELGDKIQLVG-DDLFVTNTERLNKGIKERCGNSILI 362 (449)
T ss_dssp --CS-CTTCHHHHHHHHHHHTTTSEEEE-STTTTTCHHHHHHHHHTTCCSEEEE
T ss_pred --CC-CcchHHHHHHHHHHhCCCceEEC-CcceeCCHHHHHHHHHcCCCCEEEE
Confidence 11 245899999999988 566664 443 3 6999999998777898876
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.75 Score=39.13 Aligned_cols=97 Identities=20% Similarity=0.193 Sum_probs=60.0
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi 84 (230)
=.++++.+.+.+ ++||.+-+-- .+..+++++++.++++|+|.+-+..-.... .+..--+++.+.|.+++++||+
T Consensus 56 r~~v~~~~~~~~~gr~pvi~Gvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~---~s~~~l~~~f~~ia~a~~lPii 131 (291)
T 3a5f_A 56 RKETIKFVIDKVNKRIPVIAGTGS-NNTAASIAMSKWAESIGVDGLLVITPYYNK---TTQKGLVKHFKAVSDAVSTPII 131 (291)
T ss_dssp HHHHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHC-CTGGGCCSCEE
T ss_pred HHHHHHHHHHHhCCCCcEEEeCCc-ccHHHHHHHHHHHHhcCCCEEEEcCCCCCC---CCHHHHHHHHHHHHHhcCCCEE
Confidence 345566655543 5888877643 356889999999999999999887643210 0001123455567777889976
Q ss_pred -Ec-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 85 -AN-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 85 -~n-----GgI~s~~da~~~l~~~gadgV 107 (230)
.| |---+++.+.++.+...+-||
T Consensus 132 lYn~P~~tg~~l~~~~~~~La~~pnivgi 160 (291)
T 3a5f_A 132 IYNVPGRTGLNITPGTLKELCEDKNIVAV 160 (291)
T ss_dssp EEECHHHHSCCCCHHHHHHHTTSTTEEEE
T ss_pred EEeCccccCCCCCHHHHHHHHcCCCEEEE
Confidence 44 433477777776543333333
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=91.13 E-value=1.1 Score=38.57 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC-ccEEEcCCCCCHH----------HHHHHHHhhC
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR-IPVLANGNVRHME----------DVQKCLEETG 103 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~-ipvi~nGgI~s~~----------da~~~l~~~g 103 (230)
...+++...++|++.+.+++ .. +..+++.++ -.++..+||+-.. ...++++ .|
T Consensus 160 V~~lA~~a~~~G~dGvV~s~------------~E---~~~IR~~~~~~fl~VTPGIr~qG~~~~DQ~Rv~t~~~a~~-aG 223 (303)
T 3ru6_A 160 VINFSKISYENGLDGMVCSV------------FE---SKKIKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARE-NL 223 (303)
T ss_dssp HHHHHHHHHHTTCSEEECCT------------TT---HHHHHHHSCTTSEEEECCCCTTC--------CCSHHHHHH-TT
T ss_pred HHHHHHHHHHcCCCEEEECH------------HH---HHHHHHhCCCccEEECCCcCcccCCcccccccCCHHHHHH-cC
Confidence 34677788899999987622 11 456677664 4677889987211 2444554 89
Q ss_pred CcEEEEehhhhhCCcc
Q 026945 104 CEGVLSAESLLENPAL 119 (230)
Q Consensus 104 adgVmigR~~l~nP~l 119 (230)
+|.+.+||++...++-
T Consensus 224 Ad~iVvGr~I~~a~dp 239 (303)
T 3ru6_A 224 SDYIVVGRPIYKNENP 239 (303)
T ss_dssp CSEEEECHHHHTSSCH
T ss_pred CCEEEEChHHhCCCCH
Confidence 9999999999986654
|
| >1r6w_A OSB synthase, O-succinylbenzoate synthase, OSBS; enolase superfamily, TIM barrel, capping alpha+beta domain, lyase; HET: 164; 1.62A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1 PDB: 1fhv_A* 1fhu_A 2ofj_A 3gc2_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.13 Score=44.46 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHc---CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDA---GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~---G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++. ++.+|. | +-.+++..+++++.
T Consensus 140 ~~~~d~~~v~avr~~~~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~i~~iE-------q-----P~~~~~~~~~l~~~ 207 (322)
T 1r6w_A 140 EAVRDGMVVNLLLEAIPDLHLRLDANRAWTPLKGQQFAKYVNPDYRDRIAFLE-------E-----PCKTRDDSRAFARE 207 (322)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEECTTCBCHHHHHHHHHTSCTTTGGGEEEEE-------C-----CBSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHhhhhccCCeeEEE-------C-----CCCChHHHHHHHHh
Confidence 3445556666666655 333444444456666667777777665 555544 1 11246777888887
Q ss_pred CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 79 LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 79 ~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+++||.+.=.+.+.+ + +.++..++|.|.+
T Consensus 208 ~~ipIa~dE~~~~~~-~-~~~~~~a~d~i~i 236 (322)
T 1r6w_A 208 TGIAIAWDESLREPD-F-AFVAEEGVRAVVI 236 (322)
T ss_dssp HCCCEEESGGGGSTT-C-CCCCCTTEEEEEE
T ss_pred CCCCEEeCCCCCChh-H-hhhhcCCCCEEEE
Confidence 888888876676643 3 3334345666554
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=91.08 E-value=2.5 Score=35.71 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCC--------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVF--------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g--------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
+.+.++++.+++. +++|.+-+... .+.+...++++.+.+.|++.|.+..-... ..+....+.++.++
T Consensus 120 ~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~----~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 120 ERLSPVIGAAIND-GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR----GTPDTVAAMLDAVL 194 (295)
T ss_dssp HHHHHHHHHHHHT-TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCC----cCHHHHHHHHHHHH
Confidence 4445556655553 66766444321 25678899999999999999999752211 22334678889999
Q ss_pred hhCC-ccEEEcC--CCC-CHHHHHHHHHhhCCcEEEEeh
Q 026945 77 NALR-IPVLANG--NVR-HMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 77 ~~~~-ipvi~nG--gI~-s~~da~~~l~~~gadgVmigR 111 (230)
+.++ +|+..-| +-. ....+..+++ .|++.|=++=
T Consensus 195 ~~~~~~~l~~H~Hn~~Gla~an~l~Ai~-aG~~~vd~sv 232 (295)
T 1ydn_A 195 AIAPAHSLAGHYHDTGGRALDNIRVSLE-KGLRVFDASV 232 (295)
T ss_dssp TTSCGGGEEEEEBCTTSCHHHHHHHHHH-HTCCEEEEBT
T ss_pred HhCCCCeEEEEECCCcchHHHHHHHHHH-hCCCEEEecc
Confidence 9887 8988766 433 2444556665 7999887653
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=91.05 E-value=0.92 Score=37.89 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
|..+..+-++.++++|++++++--....-.+.. ..-.+.++.+++.. ++|+-+-==|.++++..+.+.+.|||.|.+
T Consensus 38 D~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpni--t~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itv 115 (246)
T 3inp_A 38 DLARLGDDVKAVLAAGADNIHFDVMDNHYVPNL--TFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVF 115 (246)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB--CCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEE
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEecCCCcCcch--hcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEE
Confidence 556778889999999999998853221100001 12348899999988 788877666888888888888899999999
Q ss_pred ehhhh
Q 026945 110 AESLL 114 (230)
Q Consensus 110 gR~~l 114 (230)
.-.+.
T Consensus 116 H~Ea~ 120 (246)
T 3inp_A 116 HPEAS 120 (246)
T ss_dssp CGGGC
T ss_pred ccccc
Confidence 75444
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=91.03 E-value=0.41 Score=44.00 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-C-ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-R-IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~-ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+..+.++.+.+.|++.+.++.-.. .. ...++.++.+++.. + +||++ |+|.+.+++..+.+ .|+|+|.+|
T Consensus 241 ~~~~e~~~~l~e~gv~~l~Vd~~~g-----~~-~~~~~~i~~lk~~~~~~~~Vi~-G~V~t~~~a~~l~~-aGad~I~Vg 312 (503)
T 1me8_A 241 RDFRERVPALVEAGADVLCIDSSDG-----FS-EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLAD-AGADFIKIG 312 (503)
T ss_dssp SSHHHHHHHHHHHTCSEEEECCSCC-----CS-HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHH-HTCSEEEEC
T ss_pred hhHHHHHHHHHhhhccceEEecccC-----cc-cchhhHHHHHHHhCCCCceEee-ccccCHHHHHHHHH-hCCCeEEec
Confidence 3456678888889999999876422 11 22567788888876 4 78875 99999999998886 899999887
Q ss_pred hh
Q 026945 111 ES 112 (230)
Q Consensus 111 R~ 112 (230)
.+
T Consensus 313 ~~ 314 (503)
T 1me8_A 313 IG 314 (503)
T ss_dssp SS
T ss_pred cc
Confidence 53
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=91.02 E-value=1.2 Score=36.07 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEec--CCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHG--RTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~--rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|..++.+.++.+.+.|+++|.+-- ....+. . ....+.++++++.++.|+.+--=++++++..+...+.|+|+|.
T Consensus 21 d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~--~--~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~ 96 (230)
T 1rpx_A 21 NFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPN--I--TIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVS 96 (230)
T ss_dssp CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSC--B--CCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeeccCCcccc--c--ccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEE
Confidence 456788899999999999988842 111111 1 1236888999888777776655666776544444569999997
Q ss_pred Eeh
Q 026945 109 SAE 111 (230)
Q Consensus 109 igR 111 (230)
+.=
T Consensus 97 vh~ 99 (230)
T 1rpx_A 97 VHC 99 (230)
T ss_dssp EEC
T ss_pred EEe
Confidence 764
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=91.00 E-value=0.99 Score=36.42 Aligned_cols=86 Identities=24% Similarity=0.287 Sum_probs=61.7
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHH
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCL 99 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l 99 (230)
.||..=+|.. +.++..++++.+.+.|++.|.+.-++ +...+.++.+++ .++.+-+ |-+.+.+++..++
T Consensus 13 ~~ii~vi~~~-~~~~~~~~~~~l~~gGv~~iel~~k~---------~~~~~~i~~~~~-~~~~~ga-g~vl~~d~~~~A~ 80 (207)
T 2yw3_A 13 SRLLPLLTVR-GGEDLLGLARVLEEEGVGALEITLRT---------EKGLEALKALRK-SGLLLGA-GTVRSPKEAEAAL 80 (207)
T ss_dssp HCEEEEECCC-SCCCHHHHHHHHHHTTCCEEEEECSS---------THHHHHHHHHTT-SSCEEEE-ESCCSHHHHHHHH
T ss_pred CCEEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEeCCC---------hHHHHHHHHHhC-CCCEEEe-CeEeeHHHHHHHH
Confidence 4666667753 45678899999999999999986432 223477788877 5555444 5588999999999
Q ss_pred HhhCCcEEEEehhhhhCCcccc
Q 026945 100 EETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 100 ~~~gadgVmigR~~l~nP~lf~ 121 (230)
+ .|+|+|..+. .++.+..
T Consensus 81 ~-~GAd~v~~~~---~d~~v~~ 98 (207)
T 2yw3_A 81 E-AGAAFLVSPG---LLEEVAA 98 (207)
T ss_dssp H-HTCSEEEESS---CCHHHHH
T ss_pred H-cCCCEEEcCC---CCHHHHH
Confidence 7 8999999873 4454443
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.99 E-value=2.8 Score=35.81 Aligned_cols=96 Identities=18% Similarity=0.142 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCceEEEEECC--C---CC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-C
Q 026945 9 SLVEKLALNLNVPVSCKIRV--F---PN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-L 79 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~--g---~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~ 79 (230)
.+++.+++.+++||-+=||. | .+ .+...+-++.+.++|++.|+++.-|.+ +..|.+..+++.+. -
T Consensus 79 g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~d------g~iD~~~~~~Li~~a~ 152 (287)
T 3iwp_A 79 GVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFGALTED------GHIDKELCMSLMAICR 152 (287)
T ss_dssp HHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCC------CCcCHHHHHHHHHHcC
Confidence 45677777788999988886 2 12 233557788889999999999987654 25688888887554 4
Q ss_pred CccEEEcCC---CCCHHHHHHHHHhhCCcEEEEe
Q 026945 80 RIPVLANGN---VRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 80 ~ipvi~nGg---I~s~~da~~~l~~~gadgVmig 110 (230)
++++..+-- +.++..+.+.+...|+|.|..+
T Consensus 153 ~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTS 186 (287)
T 3iwp_A 153 PLPVTFHRAFDMVHDPMAALETLLTLGFERVLTS 186 (287)
T ss_dssp TSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEEC
T ss_pred CCcEEEECchhccCCHHHHHHHHHHcCCCEEECC
Confidence 688888765 3467778777777899999773
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.76 E-value=1 Score=38.01 Aligned_cols=69 Identities=28% Similarity=0.312 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhcCCceEEEEECC--------------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCccc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRV--------------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRAD 68 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~--------------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~ 68 (230)
.+.+.|+++.++ ++||.--+-+ +.+. +++++=++.++++|++.|.+.+. +
T Consensus 118 e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~~i~rA~a~~eAGA~~ivlE~v----------p-- 184 (264)
T 1m3u_A 118 WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECV----------P-- 184 (264)
T ss_dssp GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC----------C--
T ss_pred HHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEecC----------C--
Confidence 345666777654 7898743333 2222 45777888899999999998663 1
Q ss_pred HHHHHHHHhhCCccEEEcC
Q 026945 69 WNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nG 87 (230)
-+.+++|.+.+++|+|+-|
T Consensus 185 ~~~a~~it~~l~iP~igIG 203 (264)
T 1m3u_A 185 VELAKRITEALAIPVIGIG 203 (264)
T ss_dssp HHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHHhCCCCEEEeC
Confidence 2668899999999999865
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.77 Score=37.68 Aligned_cols=78 Identities=9% Similarity=0.023 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|..+..+.++.++++|++++++--- +.-+. . ....+.++++++.++.|+.+-==+.++++..+.+...|||+|.
T Consensus 15 D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~--~--~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~ 90 (230)
T 1tqj_A 15 DFSRLGEEIKAVDEAGADWIHVDVMDGRFVPN--I--TIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIIS 90 (230)
T ss_dssp CGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC--B--CBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEE
T ss_pred CHhHHHHHHHHHHHcCCCEEEEEEEecCCCcc--h--hhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEE
Confidence 4667888999999999999877532 11111 1 1234889999887766654322234555555656568999998
Q ss_pred Eehh
Q 026945 109 SAES 112 (230)
Q Consensus 109 igR~ 112 (230)
++-.
T Consensus 91 vh~e 94 (230)
T 1tqj_A 91 VHVE 94 (230)
T ss_dssp EECS
T ss_pred ECcc
Confidence 8854
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=90.72 E-value=1 Score=38.42 Aligned_cols=68 Identities=21% Similarity=0.253 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCceEEEEECCC--------------CC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVF--------------PN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g--------------~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
+.+.|+++.++ ++||..-+-+. .+ .+++++=++.++++|++.|.+.+. + -+
T Consensus 138 ~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~v----------p--~~ 204 (281)
T 1oy0_A 138 VAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV----------P--AE 204 (281)
T ss_dssp GHHHHHHHHHH-TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC----------C--HH
T ss_pred HHHHHHHHHHC-CCCEEeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEecC----------C--HH
Confidence 34556666554 68876332221 12 245777788899999999998663 1 26
Q ss_pred HHHHHHhhCCccEEEcC
Q 026945 71 AIKAVKNALRIPVLANG 87 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nG 87 (230)
.+++|.+.+++|+|+-|
T Consensus 205 ~a~~it~~l~iP~igIG 221 (281)
T 1oy0_A 205 LATQITGKLTIPTVGIG 221 (281)
T ss_dssp HHHHHHHHCSSCEEEES
T ss_pred HHHHHHHhCCCCEEEeC
Confidence 78899999999999865
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.42 E-value=0.34 Score=41.22 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcC
Q 026945 32 LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANG 87 (230)
Q Consensus 32 ~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nG 87 (230)
.++..+-+..+.++|++.+++|.|..+.+........-+.+..|++.+ ++.|-.+.
T Consensus 29 peEia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~Tt 85 (275)
T 3no5_A 29 VSEQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQVST 85 (275)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECC
T ss_pred HHHHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 467778888889999999999999877432221112345667778777 56665443
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=90.23 E-value=2.8 Score=36.13 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=62.5
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL- 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi- 84 (230)
.++++.+.+.+ .+||.+-+-- .+..+++++++.++++|+|++-+..-....+. .+..--.++.+.|.+++++||+
T Consensus 67 ~~v~~~~~~~~~grvpviaGvg~-~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp-~~~~~l~~~f~~ia~a~~lPiil 144 (318)
T 3qfe_A 67 AQLIATARKAVGPDFPIMAGVGA-HSTRQVLEHINDASVAGANYVLVLPPAYFGKA-TTPPVIKSFFDDVSCQSPLPVVI 144 (318)
T ss_dssp HHHHHHHHHHHCTTSCEEEECCC-SSHHHHHHHHHHHHHHTCSEEEECCCCC---C-CCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHhCCCCcEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEeCCcccCCC-CCHHHHHHHHHHHHhhCCCCEEE
Confidence 45666665544 5899886532 46688999999999999999988653221110 0011225677888999999986
Q ss_pred Ec-----CCC-CCHHHHHHHHH-hhCCcEE
Q 026945 85 AN-----GNV-RHMEDVQKCLE-ETGCEGV 107 (230)
Q Consensus 85 ~n-----GgI-~s~~da~~~l~-~~gadgV 107 (230)
.| .|+ -+++.+.++.+ ...+-||
T Consensus 145 Yn~P~~t~g~~l~~~~~~~La~~~pnIvgi 174 (318)
T 3qfe_A 145 YNFPGVCNGIDLDSDMITTIARKNPNVVGV 174 (318)
T ss_dssp EECCC----CCCCHHHHHHHHHHCTTEEEE
T ss_pred EeCCcccCCCCCCHHHHHHHHhhCCCEEEE
Confidence 33 233 57888877765 3444444
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.17 E-value=2.1 Score=36.44 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+.++.+++++.|.++|++.|.+........-.+.+ -.++.++.+++..++|+.+-- .+.++++.+++ +|++.||+-
T Consensus 28 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~-aG~~~v~i~ 103 (302)
T 2ftp_A 28 EVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMA-GSAEVFAGIRQRPGVTYAALA--PNLKGFEAALE-SGVKEVAVF 103 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGT-THHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHH-TTCCEEEEE
T ss_pred CHHHHHHHHHHHHHcCcCEEEECCCcCcccccccc-CHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHh-CCcCEEEEE
Confidence 45788999999999999999987521110000111 124455555544466765433 58899999997 899999983
Q ss_pred hhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhhCCC
Q 026945 111 ESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPV 159 (230)
Q Consensus 111 R~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~~~~ 159 (230)
=+. -.++.+.+ + ..+..+.++.+.+..+++..+|.
T Consensus 104 ~~~---s~~~~~~~---~--------~~s~ee~l~~~~~~v~~a~~~G~ 138 (302)
T 2ftp_A 104 AAA---SEAFSQRN---I--------NCSIKDSLERFVPVLEAARQHQV 138 (302)
T ss_dssp EES---CHHHHHHH---H--------SSCHHHHHHHHHHHHHHHHHTTC
T ss_pred Eec---CHHHHHHH---h--------CCCHHHHHHHHHHHHHHHHHCCC
Confidence 110 01111111 0 12455677778888888776653
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=90.10 E-value=3.6 Score=34.91 Aligned_cols=70 Identities=16% Similarity=0.081 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHhhcCCc-eEEEEECCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 4 LPLVKSLVEKLALNLNV-PVSCKIRVFP---NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~-pvsvKiR~g~---~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
.+.+...+++|+..++. ||.+-+-.|. +.+++++-+.++.++|++.|.+-+.. --.+.|+.+.+ .
T Consensus 62 ldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~na~rl~kaGa~aVklEdg~----------e~~~~I~al~~-a 130 (275)
T 1o66_A 62 LRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGGV----------WMAETTEFLQM-R 130 (275)
T ss_dssp HHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEECSG----------GGHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHHHHHHHHcCCcEEEECCcH----------HHHHHHHHHHH-c
Confidence 45566677788777764 5666655432 46788888889999999999997741 12366777765 4
Q ss_pred CccEE
Q 026945 80 RIPVL 84 (230)
Q Consensus 80 ~ipvi 84 (230)
+|||+
T Consensus 131 gIpV~ 135 (275)
T 1o66_A 131 GIPVC 135 (275)
T ss_dssp TCCEE
T ss_pred CCCeE
Confidence 78988
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=90.01 E-value=1.9 Score=37.14 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=56.1
Q ss_pred CceEEEEECCC----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEc----CC-
Q 026945 19 NVPVSCKIRVF----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLAN----GN- 88 (230)
Q Consensus 19 ~~pvsvKiR~g----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~n----Gg- 88 (230)
+.++.+=-|.. ...+++++=++.+.++|+|.|.+++.+ +.+.++++.+.+ +.|+.+| |.
T Consensus 152 ~~d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~-----------~~~ei~~~~~~~~~~Pl~~n~~~~g~~ 220 (302)
T 3fa4_A 152 GSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGIT-----------SREMARQVIQDLAGWPLLLNMVEHGAT 220 (302)
T ss_dssp TCCCEEEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC-----------CHHHHHHHHHHTTTSCEEEECCTTSSS
T ss_pred CCCEEEEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCCC-----------CHHHHHHHHHHhcCCceeEEEecCCCC
Confidence 45555555552 245788899999999999999998842 347788898887 4898776 22
Q ss_pred -CCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 89 -VRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 89 -I~s~~da~~~l~~~gadgVmigR~~l 114 (230)
..|.++ |++.|+..|..+-.++
T Consensus 221 p~~~~~e----L~~lGv~~v~~~~~~~ 243 (302)
T 3fa4_A 221 PSISAAE----AKEMGFRIIIFPFAAL 243 (302)
T ss_dssp CCCCHHH----HHHHTCSEEEETTTTH
T ss_pred CCCCHHH----HHHcCCCEEEEchHHH
Confidence 234444 3357999888765443
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.28 Score=40.77 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCC-CCHHHHHHHHHhhCCcEEE
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNV-RHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI-~s~~da~~~l~~~gadgVm 108 (230)
++.+.+.++++.+.++|+|.|.+-+- .+.+...-.+.++++++ .++|++.=+.. +.. ..|+||+.
T Consensus 17 P~~~~t~~~~~~l~~~GaD~IelG~S-----~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i--------~~gvDg~i 82 (234)
T 2f6u_A 17 PDRTNTDEIIKAVADSGTDAVMISGT-----QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV--------VYDVDYLF 82 (234)
T ss_dssp TTSCCCHHHHHHHHTTTCSEEEECCC-----TTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC--------CCCSSEEE
T ss_pred CCccccHHHHHHHHHcCCCEEEECCC-----CCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh--------hcCCCEEE
Confidence 44455678899999999999999771 12211223577888887 78999977766 332 47999999
Q ss_pred E
Q 026945 109 S 109 (230)
Q Consensus 109 i 109 (230)
+
T Consensus 83 i 83 (234)
T 2f6u_A 83 V 83 (234)
T ss_dssp E
T ss_pred E
Confidence 8
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 230 | ||||
| d1vhna_ | 305 | c.1.4.1 (A:) Putative flavin oxidoreducatase TM009 | 3e-13 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-07 | |
| d1h5ya_ | 252 | c.1.2.1 (A:) Cyclase subunit (or domain) of imidaz | 3e-06 | |
| d1ps9a1 | 330 | c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter | 1e-05 | |
| d1jvna1 | 323 | c.1.2.1 (A:230-552) Cyclase subunit (or domain) of | 4e-05 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 5e-05 | |
| d1ka9f_ | 251 | c.1.2.1 (F:) Cyclase subunit (or domain) of imidaz | 5e-04 | |
| d1djqa1 | 340 | c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N- | 6e-04 | |
| d1z41a1 | 337 | c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill | 0.001 | |
| d2a9va1 | 196 | c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA | 0.001 | |
| d1vzwa1 | 239 | c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoi | 0.001 | |
| d1xm3a_ | 251 | c.1.31.1 (A:) Thiazole biosynthesis protein ThiG { | 0.002 | |
| d1muma_ | 289 | c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichi | 0.004 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Score = 65.4 bits (158), Expect = 3e-13
Identities = 41/209 (19%), Positives = 87/209 (41%), Gaps = 13/209 (6%)
Query: 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK 60
+ +L + +V +L +++ S K R+ + + ++L + G + +H RT
Sbjct: 104 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTV--V 161
Query: 61 DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120
RA+W A+ ++ + V +G++ ED ++ LEE+GC+G+L A + P +F
Sbjct: 162 QSFTGRAEWKALSVLEKRIPTFV--SGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIF 219
Query: 121 AGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEKYPVPWRMIRSHVHKLLGEWFRIQP 180
+ S + S+ + +L+L K + + + K L + +
Sbjct: 220 KQIKDFLR---SGKYSEPSREEILRTFERHLELLIKTKGERKAVV-EMRKFLAGYTKDLK 275
Query: 181 GVREDLNAQNRLT-----FEFLYNLVDRL 204
G R ++ E YN + +
Sbjct: 276 GARRFREKVMKIEEVQILKEMFYNFIKEV 304
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 35 TIKYAKMLEDAGCSLLAV--HGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM 92
T++ AK G + HG T + ++ D+ +K V ++ V+A GNV
Sbjct: 128 TVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITP 187
Query: 93 EDVQKCLEETGCEGVLSAESLLENPALFA 121
+ ++ + + G + ++ P
Sbjct: 188 DMYKRVM-DLGVHCSVVGGAIT-RPKEIT 214
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 44.6 bits (105), Expect = 3e-06
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
D +K+AK +E+ G + + T ++DG D I+ V +++RIPV+A+G +E
Sbjct: 154 DAVKWAKEVEELGAGEILL---TSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVE 210
Query: 94 DVQKCLEETGCEGVLSAESLLEN 116
+ G + VL+A
Sbjct: 211 HFYE-AAAAGADAVLAASLFHFR 232
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAV-----HGRTRDEKDGKKFRADWNAIKAV 75
+ + +T++ A+ +E AG +++ R A + +
Sbjct: 216 SMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL 275
Query: 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
K + +P++ + + L + V A L + L
Sbjct: 276 KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAEL 319
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Score = 41.3 bits (96), Expect = 4e-05
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDV 95
+ + E G + ++ +D + D I+ VK+A++IPV+A+ E
Sbjct: 223 WELTRACEALGAGEILLNCIDKDGSNS---GYDLELIEHVKDAVKIPVIASSGAGVPEHF 279
Query: 96 QKCLEETGCEGVLSAESLLEN 116
++ +T + L A
Sbjct: 280 EEAFLKTRADACLGAGMFHRG 300
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED 94
T + AG + ++ D I+A+ A I V+A G + E+
Sbjct: 139 TFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA-GIAVIAEGKIHSPEE 197
Query: 95 VQKCLEETGCEGVLSAESLLENPALFAGFRTA 126
+K + G G++ ++ + F A
Sbjct: 198 AKKIN-DLGVAGIVVGGAITRPKEIAERFIEA 228
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Score = 37.8 bits (87), Expect = 5e-04
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHME 93
+++A + G + + T ++DG K D + V A+ +PV+A+G ME
Sbjct: 152 HAVEWAVKGVELGAGEILL---TSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRME 208
Query: 94 DVQKCLEETGCEGVLSAESLLEN 116
+ + G E L+A
Sbjct: 209 HFLE-AFQAGAEAALAASVFHFG 230
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 340 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.1 bits (87), Expect = 6e-04
Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 31 NLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNA--IKAVKNALRIPVLANG 87
+ Q ++ A L D ++ + D + ++ +K VK + PVL G
Sbjct: 239 DGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKKPVLGVG 298
Query: 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119
E + + + + + + A + +P L
Sbjct: 299 RYTDPEKMIEIVTKGYADIIGCARPSIADPFL 330
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Score = 37.2 bits (85), Expect = 0.001
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 1/85 (1%)
Query: 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKF-RADWNAIKAVKNALRIPVLANGNVRHMED 94
I +AK +++ G L+ D F + + ++ + A G +
Sbjct: 231 IGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSM 290
Query: 95 VQKCLEETGCEGVLSAESLLENPAL 119
++ L+ + + LL +P
Sbjct: 291 AEEILQNGRADLIFIGRELLRDPFF 315
|
| >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: GMP synthase subunit A, GuaAA species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 196 FLYNLVDRLRELGVRIPLYKKDADDAEILADD 227
+ + LRELGV + D D +E+ D
Sbjct: 13 WTHREWRVLRELGVDTKIVPNDIDSSELDGLD 44
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Score = 36.4 bits (83), Expect = 0.001
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 38 YAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQK 97
L GC+ V +D G + +K V A PV+A+G V ++D++
Sbjct: 150 TLDRLNKEGCARYVVTDIAKD---GTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRA 206
Query: 98 C--LEETGCEGVLSAESLLEN 116
L G EG + ++L
Sbjct: 207 IAGLVPAGVEGAIVGKALYAK 227
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Score = 36.3 bits (84), Expect = 0.002
Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 9/106 (8%)
Query: 25 KIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA-DWNAIKAVKNALRIPV 83
V P D + A+ LE+ G + G + + + ++PV
Sbjct: 125 GFIVLPYTSDDVVLARKLEELGVHAIMPGASPI----GSGQGILNPLNLSFIIEQAKVPV 180
Query: 84 LANGNVRHMEDVQKCLEETGCEGVL--SAESLLENPALFA-GFRTA 126
+ + + +D + E G +GVL +A S ++P A + A
Sbjct: 181 IVDAGIGSPKDAAYAM-ELGADGVLLNTAVSGADDPVKMARAMKLA 225
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} Length = 289 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Score = 35.5 bits (81), Expect = 0.004
Identities = 22/140 (15%), Positives = 42/140 (30%), Gaps = 18/140 (12%)
Query: 24 CKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83
L I+ A+ +AG +L T + + +A+++P+
Sbjct: 157 TDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPI 205
Query: 84 LANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFAGFRTAEWIV--GSEEISKDG 139
LAN + L L S A + G+++ D
Sbjct: 206 LANITEFGATPLFTTDELRSAHVAMALYPLSAFR-AMNRAAEHVYNVLRQEGTQKSVIDT 264
Query: 140 NLDQADL--LVEYLKLCEKY 157
+ +L + Y + EK
Sbjct: 265 MQTRNELYESINYYQYEEKL 284
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 230 | |||
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 100.0 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.74 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 99.67 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.61 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 99.6 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 99.51 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 99.33 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.25 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 99.25 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.16 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 99.16 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 99.11 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.09 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 99.06 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 99.02 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.97 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.95 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 98.93 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.84 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 98.82 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.81 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.8 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.77 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 98.69 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 98.56 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.56 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.56 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.54 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.53 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.48 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.46 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.35 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 98.33 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 98.32 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.32 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.27 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 98.26 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.23 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 98.2 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 98.16 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 98.1 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.99 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 97.97 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 97.96 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.94 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.86 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 97.84 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 97.81 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 97.8 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 97.78 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 97.75 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 97.75 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 97.64 | |
| d1nu5a1 | 243 | Chlormuconate cycloisomerase {Pseudomonas sp. p51 | 97.61 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.55 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.52 | |
| d1muca1 | 242 | Muconate-lactonizing enzyme {Pseudomonas putida [T | 97.52 | |
| d1rvka1 | 255 | Hypothetical protein Atu3453 {Agrobacterium tumefa | 97.35 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.35 | |
| d2gl5a1 | 278 | Putative dehydratase protein STM2273 {Salmonella t | 97.33 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 97.24 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 97.2 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 97.16 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 97.11 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 97.1 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 97.1 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 97.07 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 97.05 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 96.93 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 96.87 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.85 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 96.84 | |
| d2gdqa1 | 256 | Hypothetical protein YitF {Bacillus subtilis [TaxI | 96.82 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 96.79 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 96.71 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.69 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 96.63 | |
| d1wufa1 | 244 | N-acylamino acid racemase {Listeria innocua [TaxId | 96.59 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 96.57 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 96.57 | |
| d1yeya1 | 252 | RTS beta protein {Xanthomonas campestris pv. campe | 96.4 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.39 | |
| d1sjda1 | 242 | N-acylamino acid racemase {Amycolatopsis sp. [TaxI | 96.39 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 96.36 | |
| d1r0ma1 | 243 | N-acylamino acid racemase {Deinococcus radiodurans | 96.25 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 96.11 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 96.1 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 96.05 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 95.93 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 95.93 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 95.88 | |
| d1jdfa1 | 309 | D-glucarate dehydratase {Escherichia coli [TaxId: | 95.8 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 95.78 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.69 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 95.69 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 95.69 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 95.67 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 95.58 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 95.57 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 95.57 | |
| d1kkoa1 | 251 | beta-Methylaspartase {Citrobacter amalonaticus [Ta | 95.28 | |
| d1wuea1 | 241 | N-acylamino acid racemase {Enterococcus faecalis [ | 95.28 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 95.27 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 95.2 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 95.1 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 94.93 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 94.82 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 94.75 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 94.73 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 94.63 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 94.48 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 94.42 | |
| d1kcza1 | 253 | beta-Methylaspartase {Clostridium tetanomorphum [T | 94.33 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 94.24 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.99 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 93.91 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 93.86 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 93.84 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 93.81 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 93.78 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 93.69 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 93.48 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 93.16 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 93.03 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 92.62 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 92.54 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 92.31 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 92.19 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 91.96 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 91.93 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 91.76 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.64 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 91.56 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 91.43 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 91.31 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 91.25 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 91.15 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 91.02 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 90.83 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 90.8 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 90.78 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 90.78 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 90.73 | |
| d1jpdx1 | 208 | L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: | 90.47 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 90.45 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 90.23 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 90.19 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 89.94 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 89.81 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 89.63 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 89.57 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 89.54 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 88.9 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 88.78 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 88.66 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 88.64 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 88.6 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 88.54 | |
| d2btma_ | 251 | Triosephosphate isomerase {Bacillus stearothermoph | 88.51 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 88.14 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 87.94 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 86.99 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 86.37 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 86.29 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 85.82 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 85.02 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 84.86 | |
| d1b9ba_ | 252 | Triosephosphate isomerase {Thermotoga maritima [Ta | 84.67 | |
| d1m6ja_ | 260 | Triosephosphate isomerase {Entamoeba histolytica [ | 84.48 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 84.46 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 84.16 | |
| d2p10a1 | 197 | Uncharacterized protein Mll9387 {Mesorhizobium lot | 84.09 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 83.88 | |
| d1trea_ | 255 | Triosephosphate isomerase {Escherichia coli [TaxId | 83.73 | |
| d1aw1a_ | 255 | Triosephosphate isomerase {Vibrio marinus [TaxId: | 83.42 | |
| d2a21a1 | 263 | 3-deoxy-D-manno-octulosonate 8-phosphate synthase | 83.4 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 83.09 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 81.17 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 80.73 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 80.39 |
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.3e-44 Score=311.92 Aligned_cols=197 Identities=20% Similarity=0.297 Sum_probs=174.5
Q ss_pred CCChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 1 MDNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 1 m~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
|+||+++.+|++++++++++|||||+|+|++..++.++++.++++|+++|+|||||+.|. +.+++||+.|+++++ +
T Consensus 104 l~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itvH~Rt~~q~--~~~~a~~~~i~~~~~--~ 179 (305)
T d1vhna_ 104 LKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIHTRTVVQS--FTGRAEWKALSVLEK--R 179 (305)
T ss_dssp GSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEESSCTTTT--TSSCCCGGGGGGSCC--S
T ss_pred ccCHHHHHHHhhhhhhhcccccccccccCcccchhhHHHHHHHHhCCcEEEechhhhhhc--cccchhhhHHHhhhh--h
Confidence 689999999999999999999999999999888889999999999999999999999875 678999999999877 6
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhhhhccCccccCCCChHHHHHHHHHHHHHHhh-CCC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTAEWIVGSEEISKDGNLDQADLLVEYLKLCEK-YPV 159 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~~~~~~g~~~~~~~~~~~~~~~~~yl~~~~~-~~~ 159 (230)
+||++||||.|++|+.++++++||||||||||++.|||+|.++....+ .+ ...+++..++++++.+|++++.+ |+.
T Consensus 180 ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~--~~-~~~~~~~~e~~~~~~~~~~~~~~~~g~ 256 (305)
T d1vhna_ 180 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLR--SG-KYSEPSREEILRTFERHLELLIKTKGE 256 (305)
T ss_dssp SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHH--HS-CCCCCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred hhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhc--CC-CcccchhHHHHHhHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999874322 22 23346778899999999997654 443
Q ss_pred --hhHHHHHHHHHHHhhhcCCCHHHHHHHHhcCccCHHHHHHHHHHHHHh
Q 026945 160 --PWRMIRSHVHKLLGEWFRIQPGVREDLNAQNRLTFEFLYNLVDRLREL 207 (230)
Q Consensus 160 --~~~~~r~h~~~~l~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~ 207 (230)
.+..+|+|+.+|+++ +++++.+|+.|++++ +.+++.++++++.++
T Consensus 257 ~~~l~~~rkhl~~~~kg-~p~ak~~R~~l~~~~--~~~el~~~l~~~~~e 303 (305)
T d1vhna_ 257 RKAVVEMRKFLAGYTKD-LKGARRFREKVMKIE--EVQILKEMFYNFIKE 303 (305)
T ss_dssp HHHHHHHHTTHHHHTTT-CTTHHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC-CCcHHHHHHHHHhCC--CHHHHHHHHHHHHHh
Confidence 377899999999987 799999999999998 999999999887653
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.74 E-value=1.7e-18 Score=149.11 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc--------------CCCCC--
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK--------------DGKKF-- 65 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~--------------~~~~~-- 65 (230)
.+|+++.+++.++++..++|+++|++.+.. +..++++.++++|++.+++++++.... .+.+|
T Consensus 147 ~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~--~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~ 224 (311)
T d1ep3a_ 147 TDPEVAAALVKACKAVSKVPLYVKLSPNVT--DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPA 224 (311)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCSS--CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGG
T ss_pred cCHHHHHHHHHHHHhccCCCeeeeeccccc--chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCc
Confidence 478999999999999999999999998653 456889999999999999988643211 01122
Q ss_pred --cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 66 --RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 66 --~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+..|+.++++++.+++|||+||||.|++|+.+++. +|||+||+|||++.|||+|.++.
T Consensus 225 i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~~~i~-~GAd~V~ig~~~~~~P~i~~~I~ 284 (311)
T d1ep3a_ 225 IKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYM-AGASAVAVGTANFADPFVCPKII 284 (311)
T ss_dssp GHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHH-HTCSEEEECTHHHHCTTHHHHHH
T ss_pred ccchhHHHHHHHhhhcceeEEEeCCcCCHHHHHHHHH-cCCCEEEecHHHHcCChHHHHHH
Confidence 33589999999999999999999999999999996 89999999999999999998775
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=99.67 E-value=4.1e-16 Score=136.36 Aligned_cols=123 Identities=11% Similarity=0.193 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCC------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-CCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVF------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-GKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-~~~~~~~~~~i~~i~ 76 (230)
..++.||+++|+++++.|+.|+++.. .+.++.+++++.++++|++++.++........ ...+....+..+.++
T Consensus 193 ~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik 272 (337)
T d1z41a1 193 YRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIR 272 (337)
T ss_dssp HHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHH
Confidence 35889999999999999999999863 35678999999999999999999987654321 123346788899999
Q ss_pred hhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 77 NALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 77 ~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
+.+++||+++|+|+|+++++++|++..||.|++||+++.||++..++..+
T Consensus 273 ~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~ 322 (337)
T d1z41a1 273 EQADMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQ 322 (337)
T ss_dssp HHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHH
T ss_pred HhcCceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHhh
Confidence 99999999999999999999999977799999999999999999988654
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.61 E-value=1.8e-15 Score=130.56 Aligned_cols=120 Identities=16% Similarity=0.262 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC--------------------cC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE--------------------KD 61 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~--------------------~~ 61 (230)
.+|+.+.++++++++.+++||.||++... .+..++++.++++|++.|+++++.... ..
T Consensus 154 ~~~~~~~~i~~~v~~~~~~pv~vKl~~~~--~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~g 231 (312)
T d1gtea2 154 QDPELVRNICRWVRQAVQIPFFAKLTPNV--TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYG 231 (312)
T ss_dssp GCHHHHHHHHHHHHHHCSSCEEEEECSCS--SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCE
T ss_pred hhHHHHHHHHHHHhhccCCceeecccccc--hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccc
Confidence 47899999999999999999999998643 345688999999999999998763210 01
Q ss_pred CCCCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 62 GKKFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 62 ~~~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
+++|++ .++.++++++.+ ++|||++|||.|.+|+.+++. .|||+|++|++++.+ |.++.++.
T Consensus 232 g~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~~~d~~~~l~-aGA~~Vqv~ta~~~~G~~~i~~i~ 299 (312)
T d1gtea2 232 GVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQDYC 299 (312)
T ss_dssp EEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHHHH
T ss_pred cccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHH-cCCCeeEECHhhhccChHHHHHHH
Confidence 122332 367888888887 499999999999999999997 899999999999987 77777664
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=3.1e-15 Score=130.35 Aligned_cols=123 Identities=11% Similarity=0.185 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECC------CCChHHHHHHHHHHHHcCCCEEEEecCCCCCcC-----CCCCcccHH
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRV------FPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKD-----GKKFRADWN 70 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~------g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~-----~~~~~~~~~ 70 (230)
..++.||+++|++++ ++||.+|+.. +.+.+++.++++.++++|++++.++........ .........
T Consensus 191 ~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~ 270 (330)
T d1ps9a1 191 MRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSW 270 (330)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHH
T ss_pred hHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHH
Confidence 468899999999988 4677777654 245688999999999999999999875432211 011123456
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
..+++++.+++||+++|+|+|++.+++++++..||.|++||+++.||+++.++..+
T Consensus 271 ~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~~G 326 (330)
T d1ps9a1 271 VTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSG 326 (330)
T ss_dssp HHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTT
T ss_pred HHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHHcc
Confidence 67889999999999999999999999999977799999999999999999988754
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.51 E-value=4.5e-14 Score=123.25 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCC-------ChHHHHHHHHHHHHcCCCEEEEecCCCCCc-------CCCCCcc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFP-------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-------DGKKFRA 67 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~-------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-------~~~~~~~ 67 (230)
..++.||+++|++++ ++||.+|+...+ +.+.....+..+++.|+|.+.|+..+..+. ..+....
T Consensus 199 ~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~ 278 (340)
T d1djqa1 199 ARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGH 278 (340)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTT
T ss_pred hHHHHHHHHHHHHHHhhhhhceeeccccccccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccc
Confidence 468899999999988 578888876521 223345666788899999999987543211 1122345
Q ss_pred cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 68 DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 68 ~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+++.+.+++.+++||+++|+|+|++++++++++..||+|++||+++.||+|.++++.+
T Consensus 279 ~~~~~~~ik~~~~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~~G 337 (340)
T d1djqa1 279 TIPWVKLVKQVSKKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQG 337 (340)
T ss_dssp THHHHHHHHTTCSSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTT
T ss_pred cHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHHcc
Confidence 77889999999999999999999999999999976699999999999999999988754
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=99.33 E-value=6.2e-12 Score=110.44 Aligned_cols=117 Identities=13% Similarity=0.156 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhhcCC-ceEEEEECCC----------CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 5 PLVKSLVEKLALNLN-VPVSCKIRVF----------PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~-~pvsvKiR~g----------~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
.++.||+++|+++++ -+|.+++... .+.++++++++.+++.|+|+|+++..+... ..+....+.+
T Consensus 211 Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~----~~~~~~~~~~ 286 (363)
T d1vyra_ 211 RLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAG----GKPYSEAFRQ 286 (363)
T ss_dssp HHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTB----CCCCCHHHHH
T ss_pred HhHHHHHhhhhhhcCCCCcceeecccccccchhhcccchHHHHHHHHHHHhcCCeeeecccCCccC----CccccHHHHH
Confidence 588999999999884 3578887752 224578999999999999999998754332 2244567778
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+++.+++||+++|.+ |++.+++++++..||.|.+||+++.||++..+++.+
T Consensus 287 ~~~~~~~~~vi~~G~~-t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~~g 338 (363)
T d1vyra_ 287 KVRERFHGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQKK 338 (363)
T ss_dssp HHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHhcCceEEecCCC-CHHHHHHHHHCCCcceehhhHHHHHCccHHHHHHhC
Confidence 8899999999998755 899999999976799999999999999999998764
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=99.25 E-value=1.2e-11 Score=105.80 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCC--------------Cc---CCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRD--------------EK---DGKK 64 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~--------------~~---~~~~ 64 (230)
.+++.+.++++.+++.+++||.+|+....+..+...+++.+.+.|++.++..+.... .. .+.+
T Consensus 141 ~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~s 220 (311)
T d1juba_ 141 YDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIG 220 (311)
T ss_dssp GCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEE
T ss_pred ccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcc
Confidence 368899999999999999999999998776667777888999999999877543210 00 1122
Q ss_pred Ccc----cHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC-Cccccchh
Q 026945 65 FRA----DWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN-PALFAGFR 124 (230)
Q Consensus 65 ~~~----~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n-P~lf~~~~ 124 (230)
+++ ....+.++.+.+ ++|||++|||+|.+|+.+++. .|||.|+++++++.+ |+++.++.
T Consensus 221 g~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~-aGA~~Vql~tal~~~Gp~~i~~i~ 286 (311)
T d1juba_ 221 GAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDRII 286 (311)
T ss_dssp SGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHHHH
T ss_pred ccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHH-cCCCceeeeHhhHhcChHHHHHHH
Confidence 222 245566776665 499999999999999999996 899999999999754 88888764
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.25 E-value=1.4e-11 Score=109.86 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=84.3
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------CCCCCcc----cHHHHHHHHhhCC--ccEE
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------DGKKFRA----DWNAIKAVKNALR--IPVL 84 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------~~~~~~~----~~~~i~~i~~~~~--ipvi 84 (230)
.||.||+....+.++..++++.+.+.|++.+++...+.... .+.+|++ ....++++++.++ +|||
T Consensus 267 ppi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipII 346 (409)
T d1tv5a1 267 PLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPII 346 (409)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEE
T ss_pred CceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEE
Confidence 38999999766777899999999999999999987543211 1223332 3566778888774 9999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
++|||.|++|+.+++. .||+.|+++.|++. .|.++.++..
T Consensus 347 GvGGI~s~~Da~e~i~-AGAs~VQv~T~li~~Gp~~v~~I~~ 387 (409)
T d1tv5a1 347 ASGGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQIKR 387 (409)
T ss_dssp EESSCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGHHHHHHH
T ss_pred EECCCCCHHHHHHHHH-cCCCHHhhhhHHHhcChHHHHHHHH
Confidence 9999999999999997 89999999999865 5999998754
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.16 E-value=8.8e-11 Score=94.85 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCc--CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEK--DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~--~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+.+..+.+.|+++|.++.+..... .......+|+.+.++++.+++||+++|||.|++|+.++++ .|||+||+|++
T Consensus 129 ~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~-~GAdgV~iGsA- 206 (222)
T d1y0ea_ 129 VEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMD-LGVHCSVVGGA- 206 (222)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHH-TTCSEEEECHH-
T ss_pred HHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHH-cCCCEEEEchh-
Confidence 3456778899999998765432211 1222345789999999999999999999999999999997 89999999995
Q ss_pred hhCCcccc
Q 026945 114 LENPALFA 121 (230)
Q Consensus 114 l~nP~lf~ 121 (230)
+.||+.+.
T Consensus 207 i~rp~~~~ 214 (222)
T d1y0ea_ 207 ITRPKEIT 214 (222)
T ss_dssp HHCHHHHH
T ss_pred hcCHHHHH
Confidence 56887653
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.16 E-value=1.5e-10 Score=101.91 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCC-------C--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFP-------N--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~-------~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
-.++.||+++|+++++ ..|.+++.... + ......+++.++..|+++++++........ . .....+.+
T Consensus 213 ~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~~~~~-~--~~~~~~~~ 289 (374)
T d1gwja_ 213 ARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGD-I--TYPEGFRE 289 (374)
T ss_dssp THHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCBTTBC-C--CCCTTHHH
T ss_pred hhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchHHHHHHhhccccccCceEEEeccCcccCCC-c--chhHHHHH
Confidence 4688999999999884 34545544311 1 123556788899999999999875433211 1 11223567
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+++.+++||+++|++ +++.+++++++..||.|++||+++.||+|..+++.+
T Consensus 290 ~i~~~~~~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~~G 341 (374)
T d1gwja_ 290 QMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFRLG 341 (374)
T ss_dssp HHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHHcCCCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHHcC
Confidence 8999999999999999 799999999988899999999999999999998765
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4e-10 Score=98.57 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=84.7
Q ss_pred cCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----------CCCCCc----ccHHHHHHHHhhC--
Q 026945 17 NLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----------DGKKFR----ADWNAIKAVKNAL-- 79 (230)
Q Consensus 17 ~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----------~~~~~~----~~~~~i~~i~~~~-- 79 (230)
..++||.+|+....+..+..++++.+.++|++.|++...+.... .+..|+ .....++.+++..
T Consensus 218 ~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~~ 297 (367)
T d1d3ga_ 218 VHRPAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQG 297 (367)
T ss_dssp GGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTT
T ss_pred ccCCccccccCcccchhhhhhhHHHHHhhhhheeecccccccccccccccccccccccccccchhhhHHHHHHHHHHhCC
Confidence 34789999999876777888999999999999999876542211 112222 2345667777655
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh-hhCCccccchhh
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFRT 125 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~-l~nP~lf~~~~~ 125 (230)
++|||++|||.|++|+.+++. .|||.|+++.++ +.+|.++.++..
T Consensus 298 ~ipIig~GGI~s~~Da~e~i~-aGAs~VQi~Ta~~~~Gp~ii~~I~~ 343 (367)
T d1d3ga_ 298 RVPIIGVGGVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGKVKR 343 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHHHHH
T ss_pred CccEEEECCCCCHHHHHHHHH-cCCCHHHhhHHHHhcCcHHHHHHHH
Confidence 599999999999999999997 899999999997 578999998753
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.09 E-value=3.4e-10 Score=92.01 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.++.+.++|+++|.++++...+.........+. +..+....++||+++|||+|++|+.++++ .|||+||+|+++.
T Consensus 140 ~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ipvia~GGI~t~~d~~~al~-~GAd~V~vGsAi~- 216 (230)
T d1yxya1 140 FDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDVA-LIEALCKAGIAVIAEGKIHSPEEAKKIND-LGVAGIVVGGAIT- 216 (230)
T ss_dssp HHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCHH-HHHHHHHTTCCEEEESCCCSHHHHHHHHT-TCCSEEEECHHHH-
T ss_pred HHHHHHHHhcCCCEEEeecccccccccccchHHHH-HHHHHhcCCCeEEEeCCCCCHHHHHHHHH-cCCCEEEEChhhc-
Confidence 45678889999999999998776543333334444 55566678999999999999999999996 8999999999754
Q ss_pred CCc
Q 026945 116 NPA 118 (230)
Q Consensus 116 nP~ 118 (230)
+|.
T Consensus 217 ~p~ 219 (230)
T d1yxya1 217 RPK 219 (230)
T ss_dssp CHH
T ss_pred CHH
Confidence 554
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=4.4e-10 Score=97.21 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=84.4
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC-----------cCCCCCcc----cHHHHHHHHhhC-
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE-----------KDGKKFRA----DWNAIKAVKNAL- 79 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~-----------~~~~~~~~----~~~~i~~i~~~~- 79 (230)
...++||.+|+....+..+..++++.+.+.|++.++....+... ..+.+|++ ....++++++.+
T Consensus 208 ~~~~~Pv~vKlsp~~~~~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~~i~~~al~~v~~v~~~~~ 287 (336)
T d1f76a_ 208 HHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELN 287 (336)
T ss_dssp HTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred ccCcCCcccccchhhhhhhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccchhHHHHHHHHHHHHHHcC
Confidence 34579999999976666788899999999999999886532110 11223332 245677777776
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh-hhCCccccchh
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL-LENPALFAGFR 124 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~-l~nP~lf~~~~ 124 (230)
++|||++|||.|++|+.+++. .||+.|++|.++ +.+|.++.++.
T Consensus 288 ~~ipIIG~GGI~s~~Da~e~i~-aGAsaVQv~Tal~~~Gp~ii~~I~ 333 (336)
T d1f76a_ 288 GRLPIIGVGGIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKEIV 333 (336)
T ss_dssp TSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHHH-cCCcHHHHHHHHHhcChHHHHHHH
Confidence 699999999999999999997 899999999997 56899999875
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=99.02 E-value=2.9e-10 Score=99.57 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCC-ceEEEEECCCC-------ChHH--HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 4 LPLVKSLVEKLALNLN-VPVSCKIRVFP-------NLQD--TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~-~pvsvKiR~g~-------~~~~--~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
-.++.||+++|+++++ -+|.+++.... +.++ .+..++.+...|++.+++........ ......++...
T Consensus 208 ~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~ 285 (364)
T d1icpa_ 208 CRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTA--WEKIECTESLV 285 (364)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------CCCCSH
T ss_pred hhHHHHHhhhhhcccCCcceeEEecccccccCCcCcchHHHHHHHHHHhhccceeeeeeecCccccc--ccccccHHHHH
Confidence 3678899999999884 46777765421 2223 34556666777788888776543321 11222345567
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+++.++.||+++|++ +++++++.+.+.+||.|++||+++.||++..+++.+
T Consensus 286 ~i~~~~~~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~~~g 337 (364)
T d1icpa_ 286 PMRKAYKGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFELN 337 (364)
T ss_dssp HHHHHCCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred HHHHhcCCCEEEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHHHHHHcC
Confidence 7888999999999987 789999999988999999999999999999988754
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.97 E-value=1.1e-09 Score=93.54 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEecC----------CCC-------CcCCC
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAG-CSLLAVHGR----------TRD-------EKDGK 63 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G-~~~i~vh~r----------t~~-------~~~~~ 63 (230)
.+++.+.++++.+++.+++|+.+|+-...+..+....+..+.+.+ ++.+..... +.. ...++
T Consensus 141 ~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGl 220 (312)
T d2b4ga1 141 YDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIAHFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGL 220 (312)
T ss_dssp GCHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEE
T ss_pred ccHHHHHHHHHHhhccccccceeccccccchhHHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCc
Confidence 368999999999999999999999987555444445555555544 444433211 000 01223
Q ss_pred CCcc----cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh-CCccccchhh
Q 026945 64 KFRA----DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE-NPALFAGFRT 125 (230)
Q Consensus 64 ~~~~----~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~-nP~lf~~~~~ 125 (230)
+|++ -...++++.+.+ +.||+++|||.|++|+.+++. .||+.|+++++++. .|.++.++..
T Consensus 221 SG~~l~~~al~~v~~~~~~~~~~~Iig~GGI~s~~Da~e~i~-aGAs~Vqv~Tal~~~Gp~~i~~i~~ 287 (312)
T d2b4ga1 221 GGKYVLPTALANVNAFFRRCPDKLVFGCGGVYSGEEAFLHIL-AGASMVQVGTALHDEGPIIFARLNK 287 (312)
T ss_dssp EEGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-HTEEEEEESHHHHHHCTTHHHHHHH
T ss_pred ccccccchhhHHHHHHHHHcCCCceeecCCcCCHHHHHHHHH-cCCChheeehhhHhcCcHHHHHHHH
Confidence 4443 356677777766 478999999999999999997 89999999999875 5999987753
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.95 E-value=1.5e-09 Score=93.41 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+++.|+..|.++...++. +..++|.+.+.++++.+++|||++||+.+++|+.++++.++++||++|+.+
T Consensus 221 ~l~~~i~~~~~~G~GEIlltdIdrDG---t~~G~D~el~~~i~~~~~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~ 297 (323)
T d1jvna1 221 GVWELTRACEALGAGEILLNCIDKDG---SNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMF 297 (323)
T ss_dssp EHHHHHHHHHHTTCCEEEECCGGGTT---TCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred hHHHHhhhhhccCcceeEEEeecccc---cccccchhHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence 58899999999999999999988874 344789999999999999999999999999999999988999999999998
Q ss_pred hhCCccccc
Q 026945 114 LENPALFAG 122 (230)
Q Consensus 114 l~nP~lf~~ 122 (230)
..+-.-+.+
T Consensus 298 ~~~~~si~e 306 (323)
T d1jvna1 298 HRGEFTVND 306 (323)
T ss_dssp HTTSCCHHH
T ss_pred HcCCCCHHH
Confidence 765443333
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=98.93 E-value=1.1e-09 Score=97.03 Aligned_cols=123 Identities=12% Similarity=0.081 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCC------C------hHHHHHHHHHHHHcC-----CCEEEEecCCCCCcCCC--
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFP------N------LQDTIKYAKMLEDAG-----CSLLAVHGRTRDEKDGK-- 63 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~------~------~~~~~~~a~~l~~~G-----~~~i~vh~rt~~~~~~~-- 63 (230)
-.++.||+++|++++ +-||.||+.... + ..+..+++..++..| .+.+++...........
T Consensus 221 ~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (399)
T d1oyaa_ 221 ARFTLEVVDALVEAIGHEKVGLRLSPYGVFNSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEG 300 (399)
T ss_dssp THHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTT
T ss_pred hHHHHHHHHhhhheeeccCceEEechhhcccccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCcccccc
Confidence 367899999999987 358999887521 1 124555666665543 45555544322211000
Q ss_pred CCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 64 KFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 64 ~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.+.........+++.+++||+++|+|.+.+++.+.+...+||.|.+||+++.||++..+++.+
T Consensus 301 ~~~~~~~~~~~ik~~~~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G 363 (399)
T d1oyaa_ 301 EGEYEGGSNDFVYSIWKGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG 363 (399)
T ss_dssp SSCCCSCCTTHHHHHCCSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred ccccchhHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHHcC
Confidence 111111233457788999999999999877777667667899999999999999999998765
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=1.7e-08 Score=83.65 Aligned_cols=117 Identities=18% Similarity=0.267 Sum_probs=91.8
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECC--------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRV--------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~--------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
++|+++.++.+...... -.-+.+|.+. +|.. -+..++++.+++.|+..+.++.-.++. ...++|+
T Consensus 108 ~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG---~~~G~d~ 184 (251)
T d1ka9f_ 108 RRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDG---TKEGYDL 184 (251)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTT---TCSCCCH
T ss_pred hCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccC---ccCCcch
Confidence 47899999999886543 2334444332 3421 257899999999999999999987764 3346799
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
+.++.+++..++|++++||+.+.+|+.++++ .|++||++|++++.+-.-..+
T Consensus 185 ~l~~~i~~~~~~pii~~GGv~~~~dl~~l~~-~g~~gviig~al~~g~~~~~~ 236 (251)
T d1ka9f_ 185 RLTRMVAEAVGVPVIASGGAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPK 236 (251)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHH
T ss_pred hHHHHHHhhcceeEEEecCCCCHHHHHHHHH-CCCCEEEEhHHHHcCCCCHHH
Confidence 9999999999999999999999999999886 799999999988766544443
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=98.82 E-value=8.4e-09 Score=90.49 Aligned_cols=122 Identities=13% Similarity=0.161 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEECCC------CC--hH------HHHHHHHHHHHcCCCEEEEecCCCCCc----CCC
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIRVF------PN--LQ------DTIKYAKMLEDAGCSLLAVHGRTRDEK----DGK 63 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR~g------~~--~~------~~~~~a~~l~~~G~~~i~vh~rt~~~~----~~~ 63 (230)
-.++.|||++|+++++ .++..++... .+ .+ +.++.+..+...+++++.+........ .+.
T Consensus 209 ~Rf~lEii~aIr~~vg~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 288 (380)
T d1q45a_ 209 CRFLKQVVEGVVSAIGASKVGVRVSPAIDHLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGR 288 (380)
T ss_dssp HHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC-----------
T ss_pred hhhHHHHHHHHHHHccccCceEEEeecccccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCcccccccccccc
Confidence 4678999999999883 5554443321 11 11 222333444557899999886433211 011
Q ss_pred CCcc--cHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchhhh
Q 026945 64 KFRA--DWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFRTA 126 (230)
Q Consensus 64 ~~~~--~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~~~ 126 (230)
.++. .....+.+++.+++||+++|++ +++.+++++++..||.|.+||+++.||+|.++++.+
T Consensus 289 ~~~~~~~~~~~~~ik~~~~~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~g 352 (380)
T d1q45a_ 289 QGSDEEEAKLMKSLRMAYNGTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKID 352 (380)
T ss_dssp ----CHHHHHHHHHHHHSCSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred cCchhhhHHHHHHHhhccCCcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCccHHHHHhcC
Confidence 1111 2345677888999999999998 699999999988899999999999999999988754
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.81 E-value=1e-08 Score=84.38 Aligned_cols=115 Identities=20% Similarity=0.278 Sum_probs=85.2
Q ss_pred CChHHHHHHHHHHhhcCCceEEEEECC------CCC--hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 2 DNLPLVKSLVEKLALNLNVPVSCKIRV------FPN--LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~~~pvsvKiR~------g~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
.+|+++.++.+...+++ -|++..|- +|. .....++.+.+.+.|+..|.++.-.+.. +..++|++.+.
T Consensus 108 ~~~~~~~~~~~~~g~~~--vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG---t~~G~d~~l~~ 182 (239)
T d1vzwa1 108 ETPEWVAKVIAEHGDKI--AVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDG---TLQGPNLELLK 182 (239)
T ss_dssp HCHHHHHHHHHHHGGGE--EEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC----------CCCHHHHH
T ss_pred hccccchhhhccCCcee--eeeeccceeeecCccceeeccccchhhhhhhhccccEEEEEeecccc---eecCCcchhhh
Confidence 47889999998887653 33333332 221 2345678899999999999999887764 33367999999
Q ss_pred HHHhhCCccEEEcCCCCCHHHHHHH--HHhhCCcEEEEehhhhhCCcccc
Q 026945 74 AVKNALRIPVLANGNVRHMEDVQKC--LEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 74 ~i~~~~~ipvi~nGgI~s~~da~~~--l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+.+..++|++++|||+|.+|+.++ +...|++||.+|++++.+---+.
T Consensus 183 ~i~~~~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~ 232 (239)
T d1vzwa1 183 NVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLE 232 (239)
T ss_dssp HHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHH
T ss_pred hhhhccCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCCCCHH
Confidence 9999999999999999999999987 44579999999999887654333
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.80 E-value=3.2e-08 Score=82.15 Aligned_cols=113 Identities=25% Similarity=0.324 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHhhc-CCceEEEEECC--------CCCh---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 2 DNLPLVKSLVEKLALN-LNVPVSCKIRV--------FPNL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~-~~~pvsvKiR~--------g~~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
.||+++.++.+...+. +-+.+.+|..- +|.. -+..++++.+++.|+..+.++...++. ...++|+
T Consensus 110 ~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG---~~~G~d~ 186 (252)
T d1h5ya_ 110 RNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDG---TGLGYDV 186 (252)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTT---TCSCCCH
T ss_pred CCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccC---ccCCcCH
Confidence 4789999999988653 34455555331 2321 256789999999999999999887764 3346799
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.++.+++..++||+++|||.+.+|+.++.+ .|++||.+|+.++.+-.
T Consensus 187 ~~~~~i~~~~~~pii~~GGv~~~~di~~l~~-~g~~gv~~gs~l~~~~~ 234 (252)
T d1h5ya_ 187 ELIRRVADSVRIPVIASGGAGRVEHFYEAAA-AGADAVLAASLFHFRVL 234 (252)
T ss_dssp HHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTSS
T ss_pred HHHHHHHHhcCCCEEEecCCCCHHHHHHHHH-CCCCEEEEhhHHHcCCC
Confidence 9999999999999999999999999999765 89999999998875543
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.77 E-value=3.1e-08 Score=82.20 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=88.0
Q ss_pred CChHHHHHHHHHHhhc-CCceEEEEEC-----C---CCC---hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH
Q 026945 2 DNLPLVKSLVEKLALN-LNVPVSCKIR-----V---FPN---LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW 69 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~-~~~pvsvKiR-----~---g~~---~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~ 69 (230)
+||+++.++.+..... +-+.+.++.. + +|. ..+..++++.+++.|+..|.++.-.++. +..++|+
T Consensus 108 ~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG---t~~G~d~ 184 (253)
T d1thfd_ 108 ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDG---TKSGYDT 184 (253)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTT---SCSCCCH
T ss_pred hChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccC---ccCCccc
Confidence 4799999999998554 2222233211 0 232 2357799999999999999999887764 3346799
Q ss_pred HHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 70 NAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 70 ~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+..+++..++|++++||+.|.+|+.++++ .|++||.+|++++.+--
T Consensus 185 ~ll~~i~~~~~~pvi~~GGv~s~~di~~l~~-~g~~gvivgsal~~~~~ 232 (253)
T d1thfd_ 185 EMIRFVRPLTTLPIIASGGAGKMEHFLEAFL-AGADAALAASVFHFREI 232 (253)
T ss_dssp HHHHHHGGGCCSCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTTCS
T ss_pred cccccccccccceEEEecCCCCHHHHHHHHH-CCCCEEEEchHHHcCCC
Confidence 9999999999999999999999999999886 79999999998876543
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.69 E-value=6e-08 Score=82.84 Aligned_cols=105 Identities=18% Similarity=0.196 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------C-----CCCCcccH
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------D-----GKKFRADW 69 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------~-----~~~~~~~~ 69 (230)
..+.+.++.+++.++.|+.+|.-.. .+ .+.+..+.++|+|.|.|.+....+. . ...+.+..
T Consensus 144 ~~~~~~i~~i~~~~~~~vivk~v~~~~~----~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~ 219 (329)
T d1p0ka_ 144 SGALKRIEQICSRVSVPVIVKEVGFGMS----KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTA 219 (329)
T ss_dssp TTHHHHHHHHHHHCSSCEEEEEESSCCC----HHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHH
T ss_pred cchHHHHHHHHHHcCCCcEEEecCCcch----HHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccchhHhHHHHH
Confidence 3445677888888899999986432 23 3456677889999999965322110 0 01122334
Q ss_pred HHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 70 NAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
..+..+.... ++|||+.|||++..|+.++|. .|||+||+||.++
T Consensus 220 ~~l~~~~~~~~~v~viadGGIr~g~Dv~KAla-lGAdaV~iGr~~l 264 (329)
T d1p0ka_ 220 ASLAEIRSEFPASTMIASGGLQDALDVAKAIA-LGASCTGMAGHFL 264 (329)
T ss_dssp HHHHHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHH
T ss_pred HHHHHHHhhcCCceEEEcCCcccHHHHHHHHH-cCCCchhccHHHH
Confidence 5555555544 699999999999999999997 8999999999654
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=98.56 E-value=2.2e-07 Score=78.11 Aligned_cols=96 Identities=26% Similarity=0.222 Sum_probs=68.0
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------CC-------CCCcccHHHHHHHHhhC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------DG-------KKFRADWNAIKAVKNAL 79 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------~~-------~~~~~~~~~i~~i~~~~ 79 (230)
..++.|+.+|.-.... +.+.++.+.++|++.|.|.++...+. .+ ..+.+..+.+..+++..
T Consensus 156 ~~~~~p~~~k~v~~~~---~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~ 232 (310)
T d1vcfa1 156 LPLPFPVMVKEVGHGL---SREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVL 232 (310)
T ss_dssp CSCSSCEEEECSSSCC---CHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHC
T ss_pred hhccCCceeeeecCcc---cHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhc
Confidence 3457899999754322 24667889999999999976432110 00 01122334555665543
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
++|||+.|||++..|+.++|. .|||+||+||+++.
T Consensus 233 ~~i~Ii~dGGIr~g~Dv~KALa-lGAdaV~iGr~~l~ 268 (310)
T d1vcfa1 233 PHLPLVASGGVYTGTDGAKALA-LGADLLAVARPLLR 268 (310)
T ss_dssp SSSCEEEESSCCSHHHHHHHHH-HTCSEEEECGGGHH
T ss_pred CCCeEEeCCCCCchHHHHHHHH-hCCCEeeEhHHHHH
Confidence 699999999999999999997 89999999998764
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.56 E-value=1.5e-07 Score=81.33 Aligned_cols=98 Identities=21% Similarity=0.244 Sum_probs=76.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEc
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLAN 86 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~n 86 (230)
+-+..+++.++.|+.+|--... +-+..+.++|++.+.|++....+.. ..+.-.+.+.++++.+ ++||++.
T Consensus 207 ~~i~~l~~~~~~pii~Kgi~~~------~da~~a~~~G~d~i~vsnhggr~~d--~~~~~~~~l~~i~~~~~~~~~iiad 278 (349)
T d1tb3a1 207 NDLSLLQSITRLPIILKGILTK------EDAELAMKHNVQGIVVSNHGGRQLD--EVSASIDALREVVAAVKGKIEVYMD 278 (349)
T ss_dssp HHHHHHHTTCCSCEEEEEECSH------HHHHHHHHTTCSEEEECCGGGTSSC--SBCCHHHHHHHHHHHHTTSSEEEEE
T ss_pred HHHHHHHHhcCCCcccchhhhh------HHHHHHHHhhccceeeecccccccc--ccccchhhcceeeeccCCCeeEEec
Confidence 5677788888999999965432 4467778999999999754333322 2345567788887765 5899999
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
|||++..|+.++|. .|||+|+|||++|.
T Consensus 279 GGIR~G~Dv~KALA-LGA~~V~igrp~L~ 306 (349)
T d1tb3a1 279 GGVRTGTDVLKALA-LGARCIFLGRPILW 306 (349)
T ss_dssp SSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred cCcCcHHHHHHHHH-cCCCEEEEChHHHH
Confidence 99999999999998 89999999998774
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=98.56 E-value=8e-08 Score=82.39 Aligned_cols=90 Identities=11% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHH-----------HHHHHHhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMED-----------VQKCLEET 102 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~d-----------a~~~l~~~ 102 (230)
+.++.|+.+.+.|||.|++-.-++..........+++.++++++.+.+||.+.|||+|.+| |.++++ .
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~-~ 127 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR-S 127 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHH-c
Confidence 7899999999999999999765543221111235689999999999999999999999654 678886 8
Q ss_pred CCcEEEEehhhhhCCccccchh
Q 026945 103 GCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 103 gadgVmigR~~l~nP~lf~~~~ 124 (230)
|||-|.||+.++.||.++.++.
T Consensus 128 GadKVvI~T~ai~~p~~~~e~~ 149 (323)
T d1jvna1 128 GADKVSIGTDAVYAAEKYYELG 149 (323)
T ss_dssp TCSEEEECHHHHHHHHHHHHTT
T ss_pred CCCeEEechHHhhChHHHHHHH
Confidence 9999999999999999888764
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.54 E-value=7.2e-08 Score=79.87 Aligned_cols=88 Identities=19% Similarity=0.333 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+.+.|++.|++-.-.+... ....+++.+.++.+.+++|+...|||++.+++++.+. .||+-|.+|+.
T Consensus 30 gdP~~~a~~~~~~g~dei~ivDld~~~~---~~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~-~Ga~kviigs~ 105 (253)
T d1thfd_ 30 GDPVELGKFYSEIGIDELVFLDITASVE---KRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELIL-RGADKVSINTA 105 (253)
T ss_dssp TCHHHHHHHHHHTTCCEEEEEESSCSSS---HHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-TTCSEEEESHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEeeccccc---CcccHHHHHHHHHhccCccceeecccccchhhhhHHh-cCCCEEEEChH
Confidence 4688999999999999999977654321 1246789999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchh
Q 026945 113 LLENPALFAGFR 124 (230)
Q Consensus 113 ~l~nP~lf~~~~ 124 (230)
++.||.++.++.
T Consensus 106 ~~~n~~~l~~~~ 117 (253)
T d1thfd_ 106 AVENPSLITQIA 117 (253)
T ss_dssp HHHCTHHHHHHH
T ss_pred HhhChHHHHHHH
Confidence 999999988764
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.53 E-value=8.7e-08 Score=79.42 Aligned_cols=88 Identities=27% Similarity=0.396 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++|+.+++.|++.|++-....... ..+.+++.++++.+.+.+|+.+.|||+|.+++++++. .||+-|.+|..+
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~---~~~~~~~~i~~i~~~~~~pi~~gGGIr~~e~~~~ll~-~G~~kVii~s~~ 108 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPE---GRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFR-AGADKVSVNTAA 108 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTT---THHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH-HTCSEEEESHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEecccccc---ccccHHHHHHHHHhhcCCcceeecccchhhhhhhHhh-cCCcEEEecccc
Confidence 578999999999999999988766532 2256889999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.||.++.++..
T Consensus 109 ~~~~~~~~~~~~ 120 (252)
T d1h5ya_ 109 VRNPQLVALLAR 120 (252)
T ss_dssp HHCTHHHHHHHH
T ss_pred cCCcchHHHHHH
Confidence 999999887653
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.48 E-value=1.2e-07 Score=78.42 Aligned_cols=89 Identities=21% Similarity=0.346 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.+++|+.+.+.|++.|++-.-..... ....+++.++.+.+.+.+|+...|||+|.+++++++. .||+-|.+|..
T Consensus 30 gdP~~~a~~~~~~g~dei~iiDl~~~~~---~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~-~Ga~kVii~s~ 105 (251)
T d1ka9f_ 30 GDPVEAARAYDEAGADELVFLDISATHE---ERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLL-SGADKVSVNSA 105 (251)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTT---CHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHH-HTCSEEEECHH
T ss_pred CCHHHHHHHHHHcCCCEEEEEecccccc---cchhHHHHHHHHHhccCcchheeccccCHHHHHHHHH-cCCCEEEECch
Confidence 4688999999999999999988665431 1246789999999999999999999999999999997 89999999999
Q ss_pred hhhCCccccchhh
Q 026945 113 LLENPALFAGFRT 125 (230)
Q Consensus 113 ~l~nP~lf~~~~~ 125 (230)
++.||.++.++..
T Consensus 106 ~~~n~~~i~~~~~ 118 (251)
T d1ka9f_ 106 AVRRPELIRELAD 118 (251)
T ss_dssp HHHCTHHHHHHHH
T ss_pred hhhCHHHHHHHHH
Confidence 9999999886643
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=98.46 E-value=1.1e-07 Score=78.16 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH-----hhCCcEEE
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE-----ETGCEGVL 108 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~-----~~gadgVm 108 (230)
+..++++.+++.|+..|.++.-.+... ..++|++.++.+++..++||+++|||.|.+|+.++.+ ..|++||.
T Consensus 145 ~~~~~~~~~~~~g~~eii~~dId~dGt---~~G~d~~l~~~i~~~~~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvi 221 (241)
T d1qo2a_ 145 DPVSLLKRLKEYGLEEIVHTEIEKDGT---LQEHDFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTTCCEEEEEETTHHHH---TCCCCHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred ehhHHHHHhhccccceEEEeehhhhhh---ccccchhhhhhhhccCCceEEEECCCCCHHHHHHHHHccccccCCEeeEE
Confidence 578999999999999999999877643 3367999999999999999999999999999999875 24699999
Q ss_pred EehhhhhCC
Q 026945 109 SAESLLENP 117 (230)
Q Consensus 109 igR~~l~nP 117 (230)
+|++++.+-
T Consensus 222 vG~al~~g~ 230 (241)
T d1qo2a_ 222 VGRAFLEGI 230 (241)
T ss_dssp ECHHHHTTS
T ss_pred EHHHHHCCC
Confidence 999986554
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.35 E-value=6.3e-07 Score=76.97 Aligned_cols=101 Identities=16% Similarity=0.065 Sum_probs=76.1
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
...+-++.+++..+.|+.+|--.++ +-+..+.+.|++.+.+..-...+- ...+.-++.+.++....++|||+
T Consensus 209 ~~~~~i~~l~~~~~~~i~~kgv~~~------~~~~~a~~~g~~~~~~s~~gg~~~--~~~~~~~~~l~~i~~~~~~~via 280 (353)
T d1p4ca_ 209 FNWEALRWLRDLWPHKLLVKGLLSA------EDADRCIAEGADGVILSNHGGRQL--DCAISPMEVLAQSVAKTGKPVLI 280 (353)
T ss_dssp CCHHHHHHHHHHCCSEEEEEEECCH------HHHHHHHHTTCSEEEECCGGGTSC--TTCCCGGGTHHHHHHHHCSCEEE
T ss_pred CCHHHHHHHHhccccchhhhcchhh------hhHHHHHhcCCchhhhcccccccc--cccccchhcccchhcccccceee
Confidence 3455677777878889988865432 446777889999988854222211 12345567777787788999999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.|||++.-|+.++|. .|||+|++||++|.
T Consensus 281 sGGIR~G~Dv~KALa-LGAd~vgigrp~L~ 309 (353)
T d1p4ca_ 281 DSGFRRGSDIVKALA-LGAEAVLLGRATLY 309 (353)
T ss_dssp CSSCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred cCCcCchHHHHHHHH-cCCCEEEEcHHHHH
Confidence 999999999999998 89999999997764
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=98.33 E-value=2.3e-06 Score=80.18 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=80.7
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~i~~ 74 (230)
..++-+...|..+++.. +.||+||+-.+.. .-.++..+.++|+|+|+|.|........ +.|-+--..+.+
T Consensus 553 ~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~---~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~d~~GlP~~~~l~~ 629 (771)
T d1ea0a2 553 YSIEDLAQLIYDLKQINPDAKVTVKLVSRSG---IGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSE 629 (771)
T ss_dssp SSHHHHHHHHHHHHHHCTTCEEEEEEECCTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEETTHHHHSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCCCEEEEECCcCc---HHHHHHHHHhcCCCEEEEecCCCccccccHHHhhcCCcCHHHHHHH
Confidence 46788999999999876 8999999976543 3356677778999999999874332100 112221223344
Q ss_pred HHhhC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 75 VKNAL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 75 i~~~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.+.+ .|.+++.|++.|+.|+..++. .|||+|.+||++|-
T Consensus 630 ~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~a-LGAD~v~~gt~~m~ 676 (771)
T d1ea0a2 630 VHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAM-LGAEEFGIGTASLI 676 (771)
T ss_dssp HHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHH-TTCSEEECCHHHHH
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH-hCCCchHHhHHHHH
Confidence 33322 499999999999999999997 89999999999985
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=98.32 E-value=8.1e-07 Score=71.08 Aligned_cols=80 Identities=16% Similarity=0.318 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+-+....+.|+|++.+++-..+.......+..|+.++++++..++||++-||| +.+++.++++ +|++||.+.++++..
T Consensus 110 ~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~~~Pv~AiGGI-~~~ni~~~~~-~Ga~gvAvis~I~~~ 187 (206)
T d1xi3a_ 110 EEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGI-NKDNAREVLK-TGVDGIAVISAVMGA 187 (206)
T ss_dssp HHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSC-CTTTHHHHHT-TTCSEEEESHHHHTS
T ss_pred HHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhcCCCEEEECCC-CHHHHHHHHH-hCCCEEEEhHHHHCC
Confidence 44566778899999999865443212234678999999999999999999999 6788988886 899999999999986
Q ss_pred Cc
Q 026945 117 PA 118 (230)
Q Consensus 117 P~ 118 (230)
++
T Consensus 188 ~d 189 (206)
T d1xi3a_ 188 ED 189 (206)
T ss_dssp SS
T ss_pred CC
Confidence 65
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.32 E-value=3.5e-07 Score=74.89 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+.+++++.+.+.|++.|+|-.-.+.. + .+.+++.++.+.+.+.+||.+.|||+|.+++.++++ .|++-|.++..+
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~--~--~~~~~~~i~~i~~~~~~pi~vGGGIrs~~~~~~ll~-~Ga~kVvi~s~~ 106 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAF--G--TGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALA-TGCTRVNLGTAA 106 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHH--T--SCCCHHHHHHHHHHCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHH
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccc--c--ccchHHHHHHHHhhcCcceEeecccccchhhhhhhc-cccccchhhHHh
Confidence 57899999999999999998755432 1 245789999999999999999999999999999997 899999999999
Q ss_pred hhCCccccchhh
Q 026945 114 LENPALFAGFRT 125 (230)
Q Consensus 114 l~nP~lf~~~~~ 125 (230)
+.||.++.++..
T Consensus 107 ~~~~~~~~~~~~ 118 (239)
T d1vzwa1 107 LETPEWVAKVIA 118 (239)
T ss_dssp HHCHHHHHHHHH
T ss_pred hhccccchhhhc
Confidence 999999987643
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.27 E-value=1.9e-06 Score=74.27 Aligned_cols=102 Identities=25% Similarity=0.270 Sum_probs=75.5
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
.+-++.+++.++.|+.+|--.+ .+-+..+.+.|++.+.+..-...+. ..++...+.+..+++.+ ++|||+
T Consensus 213 ~~~v~~l~~~~~~~~~~kg~~~------~~da~~a~~~g~~~~~vsnhggr~l--d~~~~~~~~l~~i~~~~~~~~~iia 284 (359)
T d1goxa_ 213 WKDVAWLQTITSLPILVKGVIT------AEDARLAVQHGAAGIIVSNHGARQL--DYVPATIMALEEVVKAAQGRIPVFL 284 (359)
T ss_dssp HHHHHHHHHHCCSCEEEECCCS------HHHHHHHHHTTCSEEEECCGGGTSS--TTCCCHHHHHHHHHHHTTTSSCEEE
T ss_pred HHHHHHHHhhcccceeeecccc------hHHHHHHHHccccceeccccccccc--ccccchhhhchhhhhccCCccceee
Confidence 3446777777788888886543 2446777899999999864332222 22345567777777765 499999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.|||++.-|+.++|. .|||+|++||++|.-+.
T Consensus 285 dGGIR~G~Di~KALa-LGAd~vgigrp~L~~la 316 (359)
T d1goxa_ 285 DGGVRRGTDVFKALA-LGAAGVFIGRPVVFSLA 316 (359)
T ss_dssp ESSCCSHHHHHHHHH-HTCSEEEECHHHHHHHH
T ss_pred ccCcCcHHHHHHHHH-cCCCEEEEcHHHHHHHH
Confidence 999999999999998 89999999998775443
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.26 E-value=1e-05 Score=65.42 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=39.9
Q ss_pred cHHHHHHHHh--hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 68 DWNAIKAVKN--ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 68 ~~~~i~~i~~--~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.++.+.++++ .+++|+++.|||.|+.|+-.+++ .|||||.+|.|+..-
T Consensus 175 p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~Me-lG~dgV~v~s~I~~s 224 (254)
T d1znna1 175 PVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMH-LGADGVFVGSGIFKS 224 (254)
T ss_dssp CHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHH-TTCSEEEECGGGGGS
T ss_pred chHHHHHHHHhCCCCceEEecCCCCChhhHHHHHH-cCCCEEEEcchhhcC
Confidence 4556666665 36799999999999999999997 899999999987653
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=2.9e-06 Score=74.76 Aligned_cols=101 Identities=21% Similarity=0.191 Sum_probs=72.0
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-------C
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-------L 79 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-------~ 79 (230)
..+.+..++..++.|+.+|--.. .+-+..+.+.|++.+.+.+....+... . +.....+..+... -
T Consensus 234 ~~~~i~~i~~~~~~~~i~kgi~~------~~da~~~~~~G~~~i~vsnhggr~~d~-~-~~~~~~l~~i~~~~~~~~v~~ 305 (414)
T d1kbia1 234 TWKDIEELKKKTKLPIVIKGVQR------TEDVIKAAEIGVSGVVLSNHGGRQLDF-S-RAPIEVLAETMPILEQRNLKD 305 (414)
T ss_dssp CHHHHHHHHHHCSSCEEEEEECS------HHHHHHHHHTTCSEEEECCTTTTSSTT-C-CCHHHHHHHHHHHHHTTTCBT
T ss_pred CHHHHHHHhccCCceEEeeccch------hHHHHHHHhcCCcceeecccccccccc-c-cccccchhhhhhhhhhhccCC
Confidence 34567788888899999996532 244667789999999997654444322 1 2222333333321 2
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
++|||+.|||++.-|+.++|. .|||+|+|||.+|.-
T Consensus 306 ~~~viadGGIR~G~DVaKALA-LGAdaVgigrp~L~~ 341 (414)
T d1kbia1 306 KLEVFVDGGVRRGTDVLKALC-LGAKGVGLGRPFLYA 341 (414)
T ss_dssp TBEEEEESSCCSHHHHHHHHH-HTCSEEEECHHHHHH
T ss_pred ceeEEecCCcCcHHHHHHHHH-cCCCEEEEcHHHHHH
Confidence 599999999999999999998 899999999976643
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=98.20 E-value=7e-06 Score=70.27 Aligned_cols=108 Identities=20% Similarity=0.239 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC------CCCcCCCCCcccHHHHHHH-
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT------RDEKDGKKFRADWNAIKAV- 75 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt------~~~~~~~~~~~~~~~i~~i- 75 (230)
++.+.+.++.+++.. ++||.+.-=. +.+-++.|.++|+|.|.|-... +... + .+-+.+..+..+
T Consensus 123 ~~~~~~~ik~ik~~~~~~~viaGnV~------t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~-G-~g~p~~sai~~~~ 194 (330)
T d1vrda1 123 SRRVIETLEMIKADYPDLPVVAGNVA------TPEGTEALIKAGADAVKVGVGPGSICTTRVVA-G-VGVPQLTAVMECS 194 (330)
T ss_dssp SHHHHHHHHHHHHHCTTSCEEEEEEC------SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHH-C-CCCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHhCCCCCEEeechh------HHHHHHHHHHcCCCEEeeccccCcccccccee-c-cccccchhHHHHH
Confidence 344555555555443 4555554321 3466788899999999983211 1110 1 123445555444
Q ss_pred --HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccc
Q 026945 76 --KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 76 --~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf 120 (230)
++..++|||+.|||++..|+.++|. .|||+||+|.-+.+-..-.
T Consensus 195 ~~~~~~~vpvIAdGGi~~~gdiakAla-~GAd~Vm~Gs~fa~~~E~p 240 (330)
T d1vrda1 195 EVARKYDVPIIADGGIRYSGDIVKALA-AGAESVMVGSIFAGTEEAP 240 (330)
T ss_dssp HHHHTTTCCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTBTTSS
T ss_pred HHHHhcCceEEecCCcccCCchheeee-ccCceeeecchheeecccC
Confidence 5567899999999999999999997 8999999999888865543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.16 E-value=7.8e-06 Score=71.18 Aligned_cols=107 Identities=22% Similarity=0.223 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-----CCCCCcccHHHHHHH---
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-----DGKKFRADWNAIKAV--- 75 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-----~~~~~~~~~~~i~~i--- 75 (230)
+.+.+.++.+++.. ++||.+--=. +.+-++.|.++|+|.|.|-......- .+ .|-+.+..+..+
T Consensus 145 ~~~~~~i~~ik~~~~~~~iIaGnVa------T~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tG-vG~pq~sai~~~~~~ 217 (378)
T d1jr1a1 145 IFQINMIKYMKEKYPNLQVIGGNVV------TAAQAKNLIDAGVDALRVGMGCGSICITQEVLA-CGRPQATAVYKVSEY 217 (378)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHC-CCCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHCCCCceeecccc------cHHHHHHHHHhCCCEEeeccccccccccccccc-cCcccchhhhHHHHh
Confidence 44556666666544 5665443211 34567888999999998865432210 01 133455555544
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+...++|||+.|||.+..|+.++|. .|||+||+|.-+.+-..-
T Consensus 218 a~~~~vpIIADGGi~~~gdiakAla-~GAd~VMmGs~fAgt~Es 260 (378)
T d1jr1a1 218 ARRFGVPVIADGGIQNVGHIAKALA-LGASTVMMGSLLAATTEA 260 (378)
T ss_dssp HGGGTCCEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBTTS
T ss_pred hcccCCceecccccccCCceeeEEE-eecceeeecceeeeeecc
Confidence 4556899999999999999999997 899999999988865443
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=98.10 E-value=1.1e-05 Score=75.68 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCC------CCCcccHHHHHH
Q 026945 2 DNLPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDG------KKFRADWNAIKA 74 (230)
Q Consensus 2 ~~p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~------~~~~~~~~~i~~ 74 (230)
..++-+..+|..+++.. +.||+||+-.... .-.++..+.++|+|+|+|.|........ +.|-+-...+.+
T Consensus 580 ysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g---~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~~~GlP~~~gl~~ 656 (809)
T d1ofda2 580 YSIEDLAQLIYDLHQINPEAQVSVKLVAEIG---IGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTE 656 (809)
T ss_dssp SSHHHHHHHHHHHHHHCTTSEEEEEEECSTT---HHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHHHBCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeecC---hHHHHHHHhhcCCCEEEEeCCCCccccccHHHHhcCCccHHHHHHH
Confidence 35788899999999866 7899999975443 2245566667999999999864321100 111111122333
Q ss_pred HHhh-----C--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 75 VKNA-----L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 75 i~~~-----~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+.+. + .|.+++.|+++|+.|+..++. .|||+|.+||++|----
T Consensus 657 a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~a-LGAD~v~~gt~~l~alG 706 (809)
T d1ofda2 657 VHRVLMENQLRDRVLLRADGGLKTGWDVVMAAL-MGAEEYGFGSIAMIAEG 706 (809)
T ss_dssp HHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHH-TTCSEEECSHHHHHHTT
T ss_pred HHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHH-hCCCchhHhHHHHHHHH
Confidence 3332 2 499999999999999999997 89999999999987543
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=3.3e-06 Score=69.02 Aligned_cols=87 Identities=15% Similarity=0.332 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+..++|+.+.+.|++.++|-.-..... + .+.+...+..+++ ..+|+...|||+|.++++++++ .|+|-|.++..
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~-~--~~~~~~~~~~~~~-~~~pl~~gGGI~s~~~~~~~~~-~Ga~kVvi~s~ 104 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIE-N--SGENLPVLEKLSE-FAEHIQIGGGIRSLDYAEKLRK-LGYRRQIVSSK 104 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHH-C--CCTTHHHHHHGGG-GGGGEEEESSCCSHHHHHHHHH-TTCCEEEECHH
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccc-c--CCcchhheehhcc-cccchhhhhhhhhhhhhhhccc-cccceEecCcc
Confidence 4588999999999999999987544321 1 2445566666655 4589999999999999999997 89999999999
Q ss_pred hhhCCccccchh
Q 026945 113 LLENPALFAGFR 124 (230)
Q Consensus 113 ~l~nP~lf~~~~ 124 (230)
++.||.+.....
T Consensus 105 ~~~~~~~~~~~~ 116 (241)
T d1qo2a_ 105 VLEDPSFLKSLR 116 (241)
T ss_dssp HHHCTTHHHHHH
T ss_pred cccCchhhhhhc
Confidence 999999877543
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=97.97 E-value=1.1e-05 Score=70.50 Aligned_cols=105 Identities=23% Similarity=0.229 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC------CCCcCCCCCcccHHHHHHHHh
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT------RDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt------~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.++++.+++.. ++||.+.==. +.+-++.|.++|+|.|-|--.. +... + .|-+.+..+..+.+
T Consensus 177 ~~~~~~i~~ik~~~~~v~vIaGNV~------T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~-G-vG~pq~sai~~~~~ 248 (388)
T d1eepa_ 177 TRIIELIKKIKTKYPNLDLIAGNIV------TKEAALDLISVGADCLKVGIGPGSICTTRIVA-G-VGVPQITAICDVYE 248 (388)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEEC------SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHH-C-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCceeecccc------CHHHHHHHHhcCCCeeeecccccccccccccc-c-cCcchHHHHHHHHH
Confidence 45566777776654 6777554221 3466778889999999885432 2211 1 23445666665544
Q ss_pred ---hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 78 ---ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 78 ---~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
...+|||+-|||++..|+.++|. .|||.||+|+.+-+-..
T Consensus 249 ~~~~~~vpiIADGGi~~~Gdi~KAla-~GAd~VMlG~~lAg~~E 291 (388)
T d1eepa_ 249 ACNNTNICIIADGGIRFSGDVVKAIA-AGADSVMIGNLFAGTKE 291 (388)
T ss_dssp HHTTSSCEEEEESCCCSHHHHHHHHH-HTCSEEEECHHHHTBTT
T ss_pred HhccCCceEEeccccCcCCceeeeEE-eccceeecchhhhcccC
Confidence 35799999999999999999997 89999999998876543
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.96 E-value=6.1e-05 Score=61.62 Aligned_cols=103 Identities=13% Similarity=0.221 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++...+ .++-+-|=+. +. +-++...++|++.|-|..|.-.. ...|.+...++...+ +
T Consensus 137 ~~~~l~~l~~~a~~-lgl~~LvEvh---~~----~El~~a~~~~a~iIGINnRnL~t-----~~vd~~~~~~L~~~ip~~ 203 (247)
T d1a53a_ 137 TERELESLLEYARS-YGMEPLIEIN---DE----NDLDIALRIGARFIGINSRDLET-----LEINKENQRKLISMIPSN 203 (247)
T ss_dssp CHHHHHHHHHHHHT-TTCCCEEEEC---SH----HHHHHHHHTTCSEEEEESBCTTT-----CCBCHHHHHHHHHHSCTT
T ss_pred cHHHHHHHHHHHHH-HhhhHHhhcC---CH----HHHHHHHhCCCCeEeeeccChhh-----hhhhhhHHHHHHhhCCCC
Confidence 34556666665543 4555555554 21 22445567899999998887643 256778888887776 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+.+|+-+||.|++|+..+.+ .|+|||.||.++|.+|+.
T Consensus 204 ~~~IaESGI~t~~dv~~l~~-~G~davLIGeaLmk~~d~ 241 (247)
T d1a53a_ 204 VVKVAESGISERNEIEELRK-LGVNAFLIGSSLMRNPEK 241 (247)
T ss_dssp SEEEEESCCCCHHHHHHHHH-TTCCEEEECHHHHHCTTH
T ss_pred CeEEEecCCCCHHHHHHHHH-CCCCEEEECHHHcCCCch
Confidence 88999999999999998765 899999999999999874
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.94 E-value=7.5e-05 Score=60.47 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|++|++.||..|---|-.- ....|..+...++.+.+..++|||.-+||.++.|+..+++ .|||+|++..+.-.
T Consensus 137 v~ak~Le~~Gc~avMPlgsPI---GSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AME-lG~daVLvNTAIA~ 211 (251)
T d1xm3a_ 137 VLARKLEELGVHAIMPGASPI---GSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAME-LGADGVLLNTAVSG 211 (251)
T ss_dssp HHHHHHHHHTCSCBEECSSST---TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-TTCSEEEESHHHHT
T ss_pred HHHHHHHHcCChhHHHhhhhh---hcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHHH-ccCCEEEechhhhc
Confidence 345555666666554433211 1123567889999999999999999999999999999997 89999999887654
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.86 E-value=0.00023 Score=57.77 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=56.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+|+.+++.|+..+---+-.-. .-.|-.+...++.+++..++|||+-+||.+++|+..+++ .|||||+++.+...
T Consensus 139 v~ak~le~~Gc~~vMplgsPIG---sg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AME-lG~dgVLvnsaIa~ 213 (243)
T d1wv2a_ 139 IIARQLAEIGCIAVMPLAGLIG---SGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAME-LGCEAVLMNTAIAH 213 (243)
T ss_dssp HHHHHHHHSCCSEEEECSSSTT---CCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHH-HTCSEEEESHHHHT
T ss_pred HHHhHHHHcCceeeeecccccc---cccccccHHHHHhccccCCcceEeecccCCHHHHHHHHH-ccCCEEEechHhhc
Confidence 3456666666666544331111 123456778889899899999999999999999999997 89999999998765
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.84 E-value=4.3e-05 Score=66.05 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC------CCCcCCCCCcccHHHHHHH---
Q 026945 6 LVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT------RDEKDGKKFRADWNAIKAV--- 75 (230)
Q Consensus 6 ~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt------~~~~~~~~~~~~~~~i~~i--- 75 (230)
.+.+.++.+++.. ++||.+--= -+.+-+..|.++|+|.|-|.-.. +.+. + .+-+.+..+..+
T Consensus 134 ~~~~~i~~ik~~~~~~~iIaGNV------~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~t-G-vGvPq~sai~~~~~~ 205 (365)
T d1zfja1 134 GVLRKIAEIRAHFPNRTLIAGNI------ATAEGARALYDAGVDVVKVGIGPGSICTTRVVA-G-VGVPQVTAIYDAAAV 205 (365)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEEE------CSHHHHHHHHHTTCSEEEECSSCCTTBCHHHHT-C-CCCCHHHHHHHHHHH
T ss_pred chhHHHHHHHhhCCCcceeeccc------ccHHHHHHHHhcCCceEEeeecccccccCccee-e-eeccchhHHHHHHHH
Confidence 3444555555443 445543211 13466777889999999885322 1111 1 233456666554
Q ss_pred HhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 76 KNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 76 ~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
+...++|||+-|||++..|+.++|. .|||+||+|.-+-+-..-..
T Consensus 206 ~~~~~~~iIADGGi~~~GDi~KAla-~GAd~VMlG~~lAg~~EsPG 250 (365)
T d1zfja1 206 AREYGKTIIADGGIKYSGDIVKALA-AGGNAVMLGSMFAGTDEAPG 250 (365)
T ss_dssp HHHTTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTBSSCCC
T ss_pred HHhCCceEEecCCcCcchhhhhhhh-ccCCEEEecchhccccCCCC
Confidence 4457899999999999999999997 89999999997777554433
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=2.8e-05 Score=62.87 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHh-hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKN-ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~-~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
.+-+....+.|+|++.+.+-..... ....++..++.++.+++ .+++||++-||| +++++.++++ +|++||.+.+++
T Consensus 125 ~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~-~Ga~giAvis~I 202 (226)
T d2tpsa_ 125 MSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQ-AGADGVSMISAI 202 (226)
T ss_dssp HHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHH-TTCSEEEESHHH
T ss_pred hHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHH-hCCCEEEEhHHh
Confidence 3455666778999999988644322 22223345677777764 578999999999 7899998886 899999999999
Q ss_pred hhCCcc
Q 026945 114 LENPAL 119 (230)
Q Consensus 114 l~nP~l 119 (230)
+..++.
T Consensus 203 ~~a~dp 208 (226)
T d2tpsa_ 203 SQAEDP 208 (226)
T ss_dssp HTSSCH
T ss_pred hcCCCH
Confidence 986653
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=97.80 E-value=8.5e-05 Score=61.49 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=42.8
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.+.++++++..++||+...||+|++++.+.++ .|||||++|.+++.-
T Consensus 194 ~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~-~~ADGvIVGSAivk~ 240 (267)
T d1qopa_ 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVR-AGAAGAISGSAIVKI 240 (267)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred HHHHHHHhhhccCCceeecccCCHHHHHHHHh-cCCCEEEECHHHHHH
Confidence 57899999999999999999999999998887 799999999988763
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.78 E-value=0.00015 Score=59.33 Aligned_cols=112 Identities=14% Similarity=0.208 Sum_probs=74.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC------C------------------CC--hHHHHHHHHHHHHcCCCEEEEecCC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV------F------------------PN--LQDTIKYAKMLEDAGCSLLAVHGRT 56 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~------g------------------~~--~~~~~~~a~~l~~~G~~~i~vh~rt 56 (230)
+.+.+.++++++++..++|+.+=.-. | +| .++..++...+.+.|.+.|.+-.-|
T Consensus 64 ~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPt 143 (248)
T d1geqa_ 64 KLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPN 143 (248)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTT
T ss_pred cHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEeccc
Confidence 45677888999988878887653221 1 11 2344555555556666655554332
Q ss_pred CCC-c-----------------CCCCCc------ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 57 RDE-K-----------------DGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 57 ~~~-~-----------------~~~~~~------~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
... + .+.+|. .-.+.+.++++..++||+..-||+|++++.++++ .+||||.+|.+
T Consensus 144 t~~~ri~~i~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t~~Pv~vGFGI~~~e~v~~~~~-~~ADGvIVGSa 222 (248)
T d1geqa_ 144 TPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLK-EGANGVVVGSA 222 (248)
T ss_dssp CCHHHHHHHHHHCSSEEEEECCC-------CCCHHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHH
T ss_pred chhHHHHHHHhcCCCeEEEEecccccccchhhhhhHHHHHHHHhhhcccceeeecccCCHHHHHHHHh-cCCCEEEECHH
Confidence 211 0 111121 1256788999999999999999999999999887 78999999998
Q ss_pred hhh
Q 026945 113 LLE 115 (230)
Q Consensus 113 ~l~ 115 (230)
++.
T Consensus 223 iv~ 225 (248)
T d1geqa_ 223 LVK 225 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=97.75 E-value=3.4e-05 Score=66.67 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHH
Q 026945 5 PLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 5 ~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~ 76 (230)
+.+.+.++.+++.. ++||.+.-=. +.+-++.|.++|+|.|-|--. |+.. .+ .|-+.+..+.+++
T Consensus 136 ~~v~~~i~~ir~~~~~~~~IiAGNVa------T~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~~-tG-vG~Pq~sAv~e~a 207 (362)
T d1pvna1 136 EWQKITIGWIREKYGDKVKVGAGNIV------DGEGFRYLADAGADFIKIGIGGGSICITREQ-KG-IGRGQATAVIDVV 207 (362)
T ss_dssp HHHHHHHHHHHHHHGGGSCEEEEEEC------SHHHHHHHHHHTCSEEEECSSCSTTBCHHHH-TC-BCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccceeeeccccc------CHHHHHHHHHhCCcEEEecccccccccchhh-hc-cCCchHHHHHHHH
Confidence 34556666665433 4667664211 235577788999999988522 2221 12 2334566666554
Q ss_pred hh---------CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 77 NA---------LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 77 ~~---------~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
.. .++|||+.|||+++.|+.++|. .|||+||+|.-+-+-
T Consensus 208 ~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla-~GAd~VM~G~~lAg~ 255 (362)
T d1pvna1 208 AERNKYFEETGIYIPVCSDGGIVYDYHMTLALA-MGADFIMLGRYFARF 255 (362)
T ss_dssp HHHHHHHHHHSEECCEEEESCCCSHHHHHHHHH-TTCSEEEESHHHHTB
T ss_pred HHHHHhhhhcccCCceeeccccCcccceeEEEE-Eeccceeehhhhhcc
Confidence 32 3599999999999999999997 899999999866643
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=97.75 E-value=0.00019 Score=58.17 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=84.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++++.+-..-+|+.++++++++.+++.++.++. + .. .+-|++..+++++.++
T Consensus 44 ~~~~D~~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------e--P~-~~~d~~~~~~l~~~~~ 113 (244)
T d2chra1 44 SPQDDLIHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPELEALGVELIE-------Q--PV-GRENTQALRRLSDNNR 113 (244)
T ss_dssp CHHHHHHHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHHHHTTTCCEEE-------C--CS-CSSCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHHHhhhhHHHHh-------h--hh-hhccchhhhhhcccee
Confidence 5566667788888877 578888888889999999999999999988776 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+||.+.-.+.+++++.++++...+|.|++--.-++.
T Consensus 114 ipia~~E~~~~~~~~~~~i~~~~~d~v~~d~~~~GG 149 (244)
T d2chra1 114 VAIMADESLSTLASAFDLARDRSVDVFSLKLCNMGG 149 (244)
T ss_dssp SEEEESSSCCSHHHHHHHHTTTCCSEECCCHHHHTS
T ss_pred eeeeecccccccchhhhhhhcceeEEEeeccccccc
Confidence 999999999999999999997779999886544443
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=97.64 E-value=0.00029 Score=58.00 Aligned_cols=113 Identities=16% Similarity=0.195 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECC--------------C------CC--hHHHHHHHHHHHHcCCCEEEEecCCCCC-
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRV--------------F------PN--LQDTIKYAKMLEDAGCSLLAVHGRTRDE- 59 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~--------------g------~~--~~~~~~~a~~l~~~G~~~i~vh~rt~~~- 59 (230)
+.+.+.++++.+++..++|+.+=.-. | +| .++..++...+.+.|.+.|.+-.-+...
T Consensus 77 ~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ 156 (261)
T d1rd5a_ 77 TMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPED 156 (261)
T ss_dssp CHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHH
T ss_pred chhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchh
Confidence 45677888888988878888652211 1 12 3567788888888888888775432211
Q ss_pred c-----------------CCCCCc------ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 60 K-----------------DGKKFR------ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 60 ~-----------------~~~~~~------~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+ .+.+|. ..-+.++++++..++||++.-||+|++++.++.+ .|||||.+|.+++..
T Consensus 157 Ri~~i~~~a~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~-~gaDGvIVGSaiv~~ 235 (261)
T d1rd5a_ 157 RMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQ-WGADGVIIGSAMVRQ 235 (261)
T ss_dssp HHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHH-TTCSEEEECHHHHHH
T ss_pred HHHHHHhcCcchhhhhhccCcccccccchhHHHHHHHHhhhccCCCeEEEcCCCCHHHHHHHHh-cCCCEEEECHHHHHH
Confidence 0 111121 1246888999999999999999999999999876 789999999988753
|
| >d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Pseudomonas sp. p51 [TaxId: 65067]
Probab=97.61 E-value=0.00052 Score=55.28 Aligned_cols=102 Identities=12% Similarity=0.154 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.++.++. + .. .+.+++..+++++.++
T Consensus 44 ~~~~Di~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~ 113 (243)
T d1nu5a1 44 TPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELVE-------Q--PV-PRANFGALRRLTEQNG 113 (243)
T ss_dssp CHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCcccceEEECCCCccchhHHHHHHHhcchhhhhhh-------h--hh-hhccccccccchhccc
Confidence 5666667788887776 466777777789999999999999999998885 2 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+||.+.-.+.+..++..+++...+|.+++--+-.
T Consensus 114 ipIa~gE~~~~~~~~~~~i~~~~~d~~~~d~~~~ 147 (243)
T d1nu5a1 114 VAILADESLSSLSSAFELARDHAVDAFSLKLCNM 147 (243)
T ss_dssp SEEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred cccccccccccchhhhhccccccccccccccccc
Confidence 9999999999999999999977789988854333
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.55 E-value=0.00077 Score=54.15 Aligned_cols=103 Identities=15% Similarity=0.223 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
+.+.+.+-+.++++.+ +.++-|-+-.+ .+.++....++.+.++|+|+|--+.... .+++..+.++.+++.+
T Consensus 100 ~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~------~~gat~e~v~~m~~~~~ 173 (225)
T d1mzha_ 100 KYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIKTSTGFA------PRGTTLEEVRLIKSSAK 173 (225)
T ss_dssp CHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCS------SSCCCHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhccCceeehhhhhccCCHHHHHHHHHHHHHcccceEeecCCCC------CCCCCHHHHHHHHHHhC
Confidence 4567777777887766 44443323222 3556788899999999999998544321 2346677788887765
Q ss_pred -CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 80 -RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 80 -~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.|=++|||+|.+++.++++ .|++-+..+.+
T Consensus 174 ~~~~iKasGGIrt~~~a~~~i~-~Ga~RiGtSs~ 206 (225)
T d1mzha_ 174 GRIKVKASGGIRDLETAISMIE-AGADRIGTSSG 206 (225)
T ss_dssp TSSEEEEESSCCSHHHHHHHHH-TTCSEEEESCH
T ss_pred CCceEECcCCCCCHHHHHHHHH-hchhheecCcH
Confidence 488999999999999999997 89997655544
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.52 E-value=0.00093 Score=53.14 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC---CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g---~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+.+.+.+-+.++++.++- ..+|+=+- .+.++....++.+.++|+|+|--+.... ++++..+.++.+++.+
T Consensus 100 ~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~~~ei~~a~~~a~~aGadfiKTSTG~~------~~gat~e~v~~m~~~~ 172 (211)
T d1ub3a_ 100 DLDYLEAEVRAVREAVPQ-AVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFG------PRGASLEDVALLVRVA 172 (211)
T ss_dssp CHHHHHHHHHHHHHHSTT-SEEEEECCGGGSCHHHHHHHHHHHHHHTCSEEECCCSSS------SCCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccC-CceEEEeccccCCHHHHHHHHHHHHHhccceEEecCCCC------CCCCCHHHHHHHHHHh
Confidence 577888888888887742 33565332 3557788899999999999998543211 2356778888887765
Q ss_pred --CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 80 --RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 80 --~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+.|=++|||+|++++.++++ .|++-+-..+|
T Consensus 173 ~~~~~iKasGGIrt~~~a~~~l~-aGa~riGtSs~ 206 (211)
T d1ub3a_ 173 QGRAQVKAAGGIRDRETALRMLK-AGASRLGTSSG 206 (211)
T ss_dssp TTSSEEEEESSCCSHHHHHHHHH-TTCSEEEETTH
T ss_pred CCCceEECcCCCCCHHHHHHHHH-HhhhHhccCcH
Confidence 377889999999999999997 89997665544
|
| >d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Muconate-lactonizing enzyme species: Pseudomonas putida [TaxId: 303]
Probab=97.52 E-value=0.00065 Score=54.64 Aligned_cols=98 Identities=13% Similarity=0.184 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.+|. +- . .+-+++..+++++.++
T Consensus 44 ~~~~Di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~i~~iE-------eP--~-~~~d~~~~~~L~~~~~ 113 (242)
T d1muca1 44 PVEQDLKHVVTIKRELGDSASVRVDVNQYWDESQAIRACQVLGDNGIDLIE-------QP--I-SRINRGGQVRLNQRTP 113 (242)
T ss_dssp CHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHHHHTTCCCEE-------CC--B-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEecCCCCcHHHHHHHHHHhhhhhHHHhh-------cc--h-hhhhhhhhhhhhhhhh
Confidence 3455567777777765 577888888889999999999999999998875 21 1 2357899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+||.+...+.++.++.++++...+|.+++-
T Consensus 114 ~pIa~~E~~~~~~~~~~~i~~~~~d~~~~d 143 (242)
T d1muca1 114 APIMADESIESVEDAFSLAADGAASIFALK 143 (242)
T ss_dssp SCEEESTTCSSHHHHHHHHHHTCCSEEEEC
T ss_pred heeecccccccccchhhhhhcccccccccc
Confidence 999999999999999999987778888874
|
| >d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Atu3453 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=0.0018 Score=52.16 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=81.3
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+..+++++++.+++.++.++. | .. .+-|++..+++++.++
T Consensus 56 ~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~~~~~ 125 (255)
T d1rvka1 56 DVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLGFDWIE-------E--PM-DEQSLSSYKWLSDNLD 125 (255)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTTCSEEE-------C--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCCccceecccccccccchhhhhhhhcccchhhhhc-------C--Cc-ccccHHHHHHHHHhcc
Confidence 4567778888888876 577777777788888999999999999998887 2 11 2357899999999999
Q ss_pred ccEEEcCCCCCHH-HHHHHHHhhCCcEEEEehhhhh
Q 026945 81 IPVLANGNVRHME-DVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 81 ipvi~nGgI~s~~-da~~~l~~~gadgVmigR~~l~ 115 (230)
+||.+...+.+.. +...+++...+|.+++--+-++
T Consensus 126 ~pI~~~E~~~~~~~~~~~~i~~~~~dii~~d~~~~G 161 (255)
T d1rvka1 126 IPVVGPESAAGKHWHRAEWIKAGACDILRTGVNDVG 161 (255)
T ss_dssp SCEEECSSCSSHHHHHHHHHHTTCCSEEEECHHHHT
T ss_pred cceeehhhcccchhhhhhhhhhchhhhccccccccc
Confidence 9999988998865 6678888778898887544443
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.35 E-value=0.002 Score=52.39 Aligned_cols=100 Identities=15% Similarity=0.177 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHhhcCC-ceEEEEECC--C-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh
Q 026945 3 NLPLVKSLVEKLALNLN-VPVSCKIRV--F-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA 78 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~-~pvsvKiR~--g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~ 78 (230)
+.+.+.+-++++++.++ .+ +|+=+ + .+.++....++.+.++|+|+|--+.... .+++..+.++.+++.
T Consensus 133 ~~~~v~~ei~~v~~~~~~~~--lKVIlEt~~L~~~e~~~a~~ia~~aGadfvKTSTGf~------~~gat~e~V~~m~~~ 204 (251)
T d1o0ya_ 133 EWEYVYEDIRSVVESVKGKV--VKVIIETCYLDTEEKIAACVISKLAGAHFVKTSTGFG------TGGATAEDVHLMKWI 204 (251)
T ss_dssp CHHHHHHHHHHHHHHTTTSE--EEEECCGGGCCHHHHHHHHHHHHHTTCSEEECCCSSS------SCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccc--eeeeecccccCcHHHHHHHHHHHHhCcceeeccCCCC------CCCcCHHHHHHHHHH
Confidence 67778888888887763 44 45533 2 3456677889999999999997543321 235677778777775
Q ss_pred C--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 79 L--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 79 ~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+ .+.|=++|||+|++++.++++ .|++-+-..+
T Consensus 205 ~~~~~giKasGGIrt~~~a~~~i~-aGa~riGtSs 238 (251)
T d1o0ya_ 205 VGDEMGVKASGGIRTFEDAVKMIM-YGADRIGTSS 238 (251)
T ss_dssp HCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEESC
T ss_pred hCCCceEeccCCcCCHHHHHHHHH-HhhHHhCCCc
Confidence 5 377889999999999999997 8999764433
|
| >d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Putative dehydratase protein STM2273 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.33 E-value=0.0007 Score=55.82 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.|+++++.+ ++++.+-..-+|+.++++++++.|++.++.++. + .. .+-+++..+++++.+++
T Consensus 77 ~~~di~~v~aiRe~vG~~~~l~vDan~~~~~~~Ai~~~~~L~~~~l~wiE-------e--Pi-~~~d~~~~~~L~~~~~i 146 (278)
T d2gl5a1 77 LKMGEARIAAMREAMGDDADIIVEIHSLLGTNSAIQFAKAIEKYRIFLYE-------E--PI-HPLNSDNMQKVSRSTTI 146 (278)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHGGGCEEEEE-------C--SS-CSSCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhccccceeecccccccchhhHHHHHHhcccccceec-------c--cc-cccchhhhhhhcccccc
Confidence 355667888888887 678888888889999999999999999988886 2 11 23478999999999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
||.+.-.+.+..++.++++...+|.+.+-
T Consensus 147 pIa~gE~~~~~~~~~~~i~~~a~di~~~d 175 (278)
T d2gl5a1 147 PIATGERSYTRWGYRELLEKQSIAVAQPD 175 (278)
T ss_dssp CEEECTTCCTTHHHHHHHHTTCCSEECCC
T ss_pred ceecccccCChHHHhhhhccccceeEeec
Confidence 99998899999999999997778887664
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=97.24 E-value=0.0023 Score=50.73 Aligned_cols=97 Identities=16% Similarity=0.276 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++.+ ++.+.+-..-+|+.+++.++++.+++.|+.++. + .. .+-+++..+++++.++
T Consensus 39 ~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P~-~~~~~~~~~~l~~~~~ 108 (227)
T d2mnra1 39 ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWIE-------E--PT-LQHDYEGHQRIQSKLN 108 (227)
T ss_dssp SHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSEEE-------C--CS-CTTCHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhhhc-------C--cc-cccchhhhHHHHHHcC
Confidence 3445556677777765 567777777788888999999999999988887 2 11 2357899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+||.+.-.+.+.+++..+++...+|.+.+
T Consensus 109 ipia~gE~~~~~~~~~~~~~~~~~d~~~~ 137 (227)
T d2mnra1 109 VPVQMGENWLGPEEMFKALSIGACRLAMP 137 (227)
T ss_dssp SCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred CccccCceeEeechhhhhHhcCceeeeec
Confidence 99999889999999999999777887765
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.20 E-value=0.00037 Score=60.02 Aligned_cols=101 Identities=16% Similarity=0.137 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC------CCCCcCCCCCcccHHHHHHHHh-
Q 026945 5 PLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR------TRDEKDGKKFRADWNAIKAVKN- 77 (230)
Q Consensus 5 ~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r------t~~~~~~~~~~~~~~~i~~i~~- 77 (230)
+.+.+.++.+++..++||.+-=-. +.+- + +...|+|.|-|--. |+.+ .+ .|.+.+..+..+.+
T Consensus 142 ~~~i~~lK~ir~~~~~~vIaGNVa--T~e~----~--~~l~gaD~VkVGIG~Gs~CTTr~~-tG-vG~Pq~sAi~e~~~~ 211 (368)
T d2cu0a1 142 LKAIKSMKEMRQKVDADFIVGNIA--NPKA----V--DDLTFADAVKVGIGPGSICTTRIV-AG-VGVPQITAVAMVADR 211 (368)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEEEC--CHHH----H--TTCTTSSEEEECSSCSTTBCHHHH-TC-CCCCHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcccceeecccc--CHHH----H--HhhhcCcceeecccCcccccchhh-cc-cccchHHHHHHHHHH
Confidence 445566777777777777553211 2221 2 22368999887422 1111 11 23456666666653
Q ss_pred --hCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 78 --ALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 --~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
..++|||+.|||++..|+.++|. .|||.||+|.-+-+-
T Consensus 212 ~~~~~~~iiADGGi~~~Gdi~KAla-~GAd~VMlG~~lAg~ 251 (368)
T d2cu0a1 212 AQEYGLYVIADGGIRYSGDIVKAIA-AGADAVMLGNLLAGT 251 (368)
T ss_dssp HHHHTCEEEEESCCCSHHHHHHHHH-TTCSEEEESTTTTTB
T ss_pred HhccCCeeEecCCCCcCChhheeee-eccceeeccchhccc
Confidence 45799999999999999999997 899999999866553
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.16 E-value=0.00084 Score=53.54 Aligned_cols=109 Identities=17% Similarity=0.344 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------------- 60 (230)
+.++.+++.+++|+.|-+=+. +...+++.+.++|++.|++|.-+....
T Consensus 49 ~~i~~i~~~t~~~~dvHLMv~----~P~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~ 124 (217)
T d2flia1 49 DVVASMRKHSKLVFDCHLMVV----DPERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALE 124 (217)
T ss_dssp HHHHHHHTTCCSEEEEEEESS----SGGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGG
T ss_pred HHHHHHHhcCCCceEeEEEec----CHHHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHH
Confidence 456777777788888876442 233567888888999999985321100
Q ss_pred ---------------CCCCC----cccHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 61 ---------------DGKKF----RADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 61 ---------------~~~~~----~~~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+|+.| +.-++-++++++. .+++|.+-|||+ .+.+..+.+ .|||.+.+|++++.+
T Consensus 125 ~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~-aGad~~V~Gsaif~~ 202 (217)
T d2flia1 125 PLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYE-AGANVFVAGSYLFKA 202 (217)
T ss_dssp GGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHH-HTCCEEEESHHHHTS
T ss_pred hHHhhcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHH-CCCCEEEEchHHhCC
Confidence 12222 2234556666542 368899999995 567777765 899999999998888
Q ss_pred Cccccch
Q 026945 117 PALFAGF 123 (230)
Q Consensus 117 P~lf~~~ 123 (230)
+++-..+
T Consensus 203 ~d~~~~i 209 (217)
T d2flia1 203 SDLVSQV 209 (217)
T ss_dssp SCHHHHH
T ss_pred CCHHHHH
Confidence 7754433
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=97.11 E-value=0.0021 Score=52.21 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=73.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++... ..++-+.|-+. + ..++-+.+...|++.|-|..|.-... ..|.+...++...+ +
T Consensus 135 ~~~~l~~l~~~a~-~lgle~LvEvh---~---~~El~~al~~~~a~iiGINnRdL~t~-----~vd~~~~~~L~~~ip~~ 202 (251)
T d1i4na_ 135 TAEQIKEIYEAAE-ELGMDSLVEVH---S---REDLEKVFSVIRPKIIGINTRDLDTF-----EIKKNVLWELLPLVPDD 202 (251)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEEEC---S---HHHHHHHHTTCCCSEEEEECBCTTTC-----CBCTTHHHHHGGGSCTT
T ss_pred cHHHHHHHHHHHH-HhCCeeecccC---C---HHHHHHHhcccccceeeeeecchhcc-----chhhhHHHHHHhhCCCC
Confidence 4455666666553 35676767665 2 22444555567899999999865432 45566666776666 4
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
..+|+-+||.|++|+.. ++ .|+|+|.||.++|..|..
T Consensus 203 ~~~IaESGI~~~~d~~~-l~-~G~davLIG~sLm~~~~p 239 (251)
T d1i4na_ 203 TVVVAESGIKDPRELKD-LR-GKVNAVLVGTSIMKAENP 239 (251)
T ss_dssp SEEEEESCCCCGGGHHH-HT-TTCSEEEECHHHHHCSSH
T ss_pred CEEEEcCCCCCHHHHHH-HH-hCCCEEEEChHHhCCCCH
Confidence 78899999999999975 55 699999999999997764
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.0031 Score=51.27 Aligned_cols=104 Identities=16% Similarity=0.261 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--C
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--R 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ 80 (230)
+++.+.++++...+ .++-+-|-+. +. +-++...++|++.|-|..|.-.. -..|.+...++...+ +
T Consensus 142 ~~~~l~~l~~~a~~-lgl~~LVEvh---~~----~El~~a~~~~a~iIGINnRnL~t-----f~vd~~~t~~L~~~ip~~ 208 (254)
T d1piia2 142 DDDQYRQLAAVAHS-LEMGVLTEVS---NE----EEQERAIALGAKVVGINNRDLRD-----LSIDLNRTRELAPKLGHN 208 (254)
T ss_dssp CHHHHHHHHHHHHH-TTCEEEEEEC---SH----HHHHHHHHTTCSEEEEESEETTT-----TEECTHHHHHHHHHHCTT
T ss_pred cccHHHHHHHHHHH-HhhhHHHhhc---cH----HHHHHHHhhcccccCccccchhh-----hhhhhHHHHHHHHhCCCC
Confidence 45556666655433 4666666665 21 22455567899999998886543 145777777776665 5
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
..+++-+||+|++|+.. +. .|+|+|.||.++|..|+.-.
T Consensus 209 ~~~VsESGI~~~~d~~~-l~-~g~davLiGeslm~~~dp~~ 247 (254)
T d1piia2 209 VTVISESGINTYAQVRE-LS-HFANGFLIGSALMAHDDLHA 247 (254)
T ss_dssp SEEEEESCCCCHHHHHH-HT-TTCSEEEECHHHHTCSCHHH
T ss_pred CEEEEcCCCCCHHHHHH-HH-cCCCEEEEChHHhCCCCHHH
Confidence 77889999999999976 55 58999999999999887544
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=97.10 E-value=0.0013 Score=52.32 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=37.5
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||++.|+|.+.+++..+++ .|+|||.+|++.+.-++..+.+
T Consensus 175 ~v~vlygGsV~~~n~~~~~~~-~g~dGvLVGsAsl~a~d~~~~~ 217 (224)
T d1hg3a_ 175 EVKVLCGAGISTGEDVKKAIE-LGTVGVLLASGVTKAKDPEKAI 217 (224)
T ss_dssp TSEEEEESSCCSHHHHHHHHH-TTCSEEEESHHHHTCSSHHHHH
T ss_pred ccceEEeCCcCCHHHHHHHHh-CCCCEEEEcceeecCcCHHHHH
Confidence 689999999999999999886 7999999999999877655544
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=97.07 E-value=0.0026 Score=51.04 Aligned_cols=89 Identities=19% Similarity=0.152 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.|+++++.+ ++.+.+-..-+|+..+++++++.+++.++.++. + .. .+-|++..+++++.++
T Consensus 47 ~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~~i~wiE-------e--P~-~~~d~~~~~~l~~~~~ 116 (247)
T d1tzza1 47 PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWYE-------E--VG-DPLDYALQAALAEFYP 116 (247)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEEE-------C--CS-CTTCHHHHHHHTTTCC
T ss_pred CHHHHHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchhhhhhhc-------c--cc-ccccchhhhhhhhccc
Confidence 4555667777777765 566777777778888888899999888888776 1 11 2347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHh
Q 026945 81 IPVLANGNVRHMEDVQKCLEE 101 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~ 101 (230)
+||.+.-.+.+..++.++++.
T Consensus 117 ipia~gE~~~~~~~~~~~i~~ 137 (247)
T d1tzza1 117 GPMATGENLFSHQDARNLLRY 137 (247)
T ss_dssp SCEEECTTCCSHHHHHHHHHH
T ss_pred cccccchhhhhhHHHHHHHHc
Confidence 999999999999999999974
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=97.05 E-value=0.0013 Score=54.24 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=38.3
Q ss_pred HHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 69 WNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
-+.+.++++..++||+..=||.+++++.. + .+||||.+|.+++.
T Consensus 191 ~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~-~--~~ADGvIVGSAiV~ 234 (271)
T d1ujpa_ 191 KDLVRRIKARTALPVAVGFGVSGKATAAQ-A--AVADGVVVGSALVR 234 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHH-H--TTSSEEEECHHHHH
T ss_pred HHHHHhhhccccCCeEEeCCCCCHHHHHH-h--CCCCEEEEcHHHHH
Confidence 56789999999999999889999999975 3 38999999998864
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=96.93 E-value=0.0013 Score=52.63 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=41.6
Q ss_pred HHHHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 73 KAVKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 73 ~~i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
+.+++. -++||++.|||.+.+++..+++ .|+|||.+|++.+..++.|..+.
T Consensus 165 ~~~~~~~~~i~vlygGgV~~~n~~~~~~~-~g~dGvLVGsA~l~a~d~~~~i~ 216 (226)
T d1w0ma_ 165 GLVSRHFPEVSVITGAGIESGDDVAAALR-LGTRGVLLASAAVKAKDPYAKIV 216 (226)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHHHHHH
T ss_pred hhhhccCCCceEEEecCcCChHHHHHHhc-CCCCEEEechheecCCCHHHHHH
Confidence 334443 3699999999999999998886 79999999999998887776553
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=0.013 Score=46.31 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALR 80 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ 80 (230)
+++.-.+.++++++++ ++.+.+-..-+|+.+++.++++.+++.+.+..-+ ++ .. .+-|++..+++++..+
T Consensus 42 ~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~~le~~~~~i~~~-----Ee--P~-~~~d~~~~~~l~~~~~ 113 (234)
T d1jpma1 42 DIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELV-----EQ--PV-HKDDLAGLKKVTDATD 113 (234)
T ss_dssp CHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHHHHTTCCEEEE-----EC--CS-CTTCHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHHHHHhccCceeee-----cC--Cc-cccCHHHHHHhhcccc
Confidence 3444556666666655 3555555555677778888888888765443222 11 11 1347899999999999
Q ss_pred ccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 81 IPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 81 ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+||.....+.++.+..++++...+|.+.+--
T Consensus 114 ~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~ 144 (234)
T d1jpma1 114 TPIMADESVFTPRQAFEVLQTRSADLINIKL 144 (234)
T ss_dssp SCEEESTTCSSHHHHHHHHHTTCCSEEEECH
T ss_pred ceeecccccccchhhhhhhccCCcCeEEEee
Confidence 9999999999999999999877799988843
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.85 E-value=0.0084 Score=48.11 Aligned_cols=99 Identities=13% Similarity=0.081 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH---HhhCCc
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV---KNALRI 81 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i---~~~~~i 81 (230)
.+.++++..+. .+.|+-|-+-.+ .+.++....++...++|+|+|--+.... .+++....+..+ ....++
T Consensus 121 ev~~~~~~~~~-~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~------~~gat~~~~~~l~~~~~~~~v 193 (234)
T d1n7ka_ 121 EVSGIVKLAKS-YGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVY------TKGGDPVTVFRLASLAKPLGM 193 (234)
T ss_dssp HHHHHHHHHHH-TTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSS------CCCCSHHHHHHHHHHHGGGTC
T ss_pred HHHHHHHHHhc-cCceEEEEEeccccchHHHHHHHHHHHHhhhhheeeccccc------CCCCCHHHHHHHHHHhcCCCC
Confidence 34555554433 355554444332 3556778888889999999997443211 112333333333 333468
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.|=++|||+|.+++.++++ .|++-+-...|
T Consensus 194 gIKasGGIrt~~~a~~~i~-aGa~rIGtSs~ 223 (234)
T d1n7ka_ 194 GVKASGGIRSGIDAVLAVG-AGADIIGTSSA 223 (234)
T ss_dssp EEEEESSCCSHHHHHHHHH-TTCSEEEETTH
T ss_pred cEEeeCCcCCHHHHHHHHH-ccCceeecchH
Confidence 8999999999999999997 89997654443
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.84 E-value=0.018 Score=47.44 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----CCCCCcccH----HHHHHH
Q 026945 5 PLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK----DGKKFRADW----NAIKAV 75 (230)
Q Consensus 5 ~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~----~~~~~~~~~----~~i~~i 75 (230)
+...+-++.++... +.++.+.+..+.+.++..++++.++++|+|+|.++--..... .+..-..+. +.++.+
T Consensus 87 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v 166 (312)
T d1gtea2 87 AYWCQSVTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWV 166 (312)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHH
Confidence 44455566665544 557777788888888899999999999999999974322110 011111233 445667
Q ss_pred HhhCCccEE--EcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 76 KNALRIPVL--ANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 76 ~~~~~ipvi--~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
++.+++||+ ...++.+..++.+.+++.|+|+|.+.-
T Consensus 167 ~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~n 204 (312)
T d1gtea2 167 RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATN 204 (312)
T ss_dssp HHHCSSCEEEEECSCSSCHHHHHHHHHHHTCSEEEECC
T ss_pred hhccCCceeecccccchhHHHHHHHHHHhcccceEEEe
Confidence 777899988 567788888888888889999997754
|
| >d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein YitF species: Bacillus subtilis [TaxId: 1423]
Probab=96.82 E-value=0.0037 Score=50.44 Aligned_cols=97 Identities=9% Similarity=0.086 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC
Q 026945 3 NLPLVKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL 79 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~ 79 (230)
+++.-.+.++++++.+ ++++.+-..-+|+.+++.++++.+++ .++.++. + .. .+-|++..+++++.+
T Consensus 48 ~~~~di~~v~avr~~~G~~~~l~vDan~~~~~~~A~~~~~~l~~~~~i~~~E-------e--P~-~~~d~~~~~~l~~~~ 117 (256)
T d2gdqa1 48 SFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIGWLE-------E--PL-PFDQPQDYAMLRSRL 117 (256)
T ss_dssp CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEEEEE-------C--CS-CSSCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEeeccccCCCHHHHHHHHHHHhhcCceeEec-------c--cc-ccchHHHHHHHhhcc
Confidence 4455556677777665 56777777777777777788888876 3555554 1 11 234789999999999
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++||.+.=.+.+.+++.++++...+|.|.+
T Consensus 118 ~ipIa~gE~~~~~~~~~~~i~~~a~di~~~ 147 (256)
T d2gdqa1 118 SVPVAGGENMKGPAQYVPLLSQRCLDIIQP 147 (256)
T ss_dssp SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred cceeecCccccchhhHHHHHHhhcceeeec
Confidence 999988778999999999999777887765
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=96.79 E-value=0.0024 Score=51.96 Aligned_cols=73 Identities=21% Similarity=0.294 Sum_probs=50.1
Q ss_pred HHHcCCCEEEEecCCCCCcCCCCCcccHH---HHHH-HHhh-CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhC
Q 026945 42 LEDAGCSLLAVHGRTRDEKDGKKFRADWN---AIKA-VKNA-LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 42 l~~~G~~~i~vh~rt~~~~~~~~~~~~~~---~i~~-i~~~-~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~n 116 (230)
+.++|++.|-|..|.-... ..|.+ .+.. +.+. .++.+|+.+||.|++|+.. ++ .|+|+|.||.++|.+
T Consensus 170 a~~~~a~iIGINnRdL~t~-----~vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~dv~~-l~-~g~davLIGesLm~~ 242 (254)
T d1vc4a_ 170 ALEAGAEVLGINNRDLATL-----HINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKA-LE-GLFDAVLIGTSLMRA 242 (254)
T ss_dssp HHHHTCSEEEEESBCTTTC-----CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHT-TT-TTCSEEEECHHHHTS
T ss_pred hhcCCCCEEEEeccchhhh-----hcchHHHHHhhhcccccCCCCEEEEccCCCCHHHHHH-HH-cCCCEEEEChhhcCC
Confidence 3556777777777755432 22322 2233 3222 2578899999999999865 55 699999999999998
Q ss_pred Ccccc
Q 026945 117 PALFA 121 (230)
Q Consensus 117 P~lf~ 121 (230)
|+.-.
T Consensus 243 ~d~~~ 247 (254)
T d1vc4a_ 243 PDLEA 247 (254)
T ss_dssp SCHHH
T ss_pred CCHHH
Confidence 87544
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=96.71 E-value=0.0086 Score=47.35 Aligned_cols=98 Identities=26% Similarity=0.292 Sum_probs=73.8
Q ss_pred HHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
.++++.+.+.-=+|| +|. .+.++...+++.+.+.|+..|.|.-|+.. -++.|+++++..+=-+++.|
T Consensus 5 ~~~~~~l~~~~iipv---lr~-~~~~~~~~~~~al~~~Gi~~iEitl~~~~---------a~~~I~~l~~~~p~~~vGaG 71 (212)
T d1vhca_ 5 QQIIEKLRELKIVPV---IAL-DNADDILPLADTLAKNGLSVAEITFRSEA---------AADAIRLLRANRPDFLIAAG 71 (212)
T ss_dssp HHHHHHHHHHCEEEE---ECC-SSGGGHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHHHHHCTTCEEEEE
T ss_pred HHHHHHHHHCCEEEE---EeC-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHhcCCCceEeee
Confidence 466777766422344 665 35688999999999999999999987642 35889999887765678999
Q ss_pred CCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccc
Q 026945 88 NVRHMEDVQKCLEETGCEGVLSAESLLENPALFAG 122 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~ 122 (230)
-|.|.++++++.+ .||+.++.= -.||.+...
T Consensus 72 TV~~~~~~~~a~~-aGa~FivSP---~~~~~v~~~ 102 (212)
T d1vhca_ 72 TVLTAEQVVLAKS-SGADFVVTP---GLNPKIVKL 102 (212)
T ss_dssp SCCSHHHHHHHHH-HTCSEEECS---SCCHHHHHH
T ss_pred ecccHHHHHHHHh-hCCcEEECC---CCCHHHHHH
Confidence 9999999999997 899988751 244445443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0028 Score=51.54 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=67.3
Q ss_pred ChHHHHHHHHHHhhcC-CceEEEEECCC---CChHHHH-HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh
Q 026945 3 NLPLVKSLVEKLALNL-NVPVSCKIRVF---PNLQDTI-KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~-~~pvsvKiR~g---~~~~~~~-~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
+.+.+.+-+.++++.+ .-++.+|+=+- -+.++.+ ..++.+.++|+++|--+.... .+++..+.+..+++
T Consensus 114 ~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~------~~gat~~~v~~m~~ 187 (250)
T d1p1xa_ 114 NEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIKAGADFIKTSTGKV------AVNATPESARIMME 187 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSHHHHHHHHHHHHHTTCSEEECCCSCS------SCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEeccccCcHHHHHHHHHHHHHcCcCeEEecCCcC------CCCCCHHHHHHHHH
Confidence 4566777777776654 23344554332 1224443 456888999999997443321 22445555554443
Q ss_pred hC-------CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcccc
Q 026945 78 AL-------RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 78 ~~-------~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~ 121 (230)
.+ ++.|=++|||+|++++.++++ .|++- +|-..+ +|..|+
T Consensus 188 ~i~~~~~~~~vgIKasGGIrt~~~a~~~i~-~ga~~--iG~~~~-~~~~fR 234 (250)
T d1p1xa_ 188 VIRDMGVEKTVGFKPAGGVRTAEDAQKYLA-IADEL--FGADWA-DARHYR 234 (250)
T ss_dssp HHHHHTCTTTCEEECBSSCCSHHHHHHHHH-HHHHH--HCTTSC-STTTBC
T ss_pred HhhhhccCcceeeEecCCCCCHHHHHHHHH-HHHHH--hCcccc-ccCcee
Confidence 32 588899999999999999997 66663 333333 577776
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=96.63 E-value=0.0082 Score=47.59 Aligned_cols=92 Identities=15% Similarity=0.129 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
.+...+|-.-+... ||..=+|.. +.+++.++++.+.+.|+..|.|.-|+.. -++.|+.+++..+=-+
T Consensus 4 ~~~~~~i~~~l~~~---~iipvl~~~-~~~~a~~~~~al~~~Gi~~iEitl~~p~---------a~~~i~~l~~~~p~~~ 70 (216)
T d1mxsa_ 4 ADKAARIDAICEKA---RILPVITIA-REEDILPLADALAAGGIRTLEVTLRSQH---------GLKAIQVLREQRPELC 70 (216)
T ss_dssp HHHHHHHHHHHHHH---SEEEEECCS-CGGGHHHHHHHHHHTTCCEEEEESSSTH---------HHHHHHHHHHHCTTSE
T ss_pred HHHHHHHHHHHHhC---CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHhCCCcc
Confidence 34444444444432 333336663 5688999999999999999999887532 3688999988876567
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++.|.|.|.++++++.+ .||+.++.
T Consensus 71 vGaGTV~~~~~~~~a~~-aGa~Fivs 95 (216)
T d1mxsa_ 71 VGAGTVLDRSMFAAVEA-AGAQFVVT 95 (216)
T ss_dssp EEEECCCSHHHHHHHHH-HTCSSEEC
T ss_pred eeeeeeecHHHHHHHHh-CCCCEEEC
Confidence 89999999999999997 89998765
|
| >d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Listeria innocua [TaxId: 1642]
Probab=96.59 E-value=0.0096 Score=47.39 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=40.0
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+-|++..+++++.+++||++...+.++.++.++++...+|.+++-
T Consensus 93 ~~d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~a~d~v~~d 137 (244)
T d1wufa1 93 TKDFVDHAWLQKQLKTRICLDENIRSVKDVEQAHSIGSCRAINLK 137 (244)
T ss_dssp SSCSHHHHHHHTTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred ccchhhhhccccccccccccCccccchhhhhhhccccccceeecc
Confidence 347889999999999999999999999999999997778998874
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.0076 Score=47.99 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=39.2
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
-+.+..+++.. ++|++..+||+|++++.++. .+||||.+|.++..++.
T Consensus 169 ~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~--~~ADgVVVGSAiv~~ie 217 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYEDFD 217 (229)
T ss_dssp HHHHHHHHHTCSSSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHCHH
T ss_pred chhHHHHHhhccCcceEEEcccCCHHHHHHHH--cCCCEEEECHHHHhhHH
Confidence 46666776665 59999999999999999876 38999999999876553
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=96.57 E-value=0.01 Score=47.48 Aligned_cols=109 Identities=15% Similarity=0.262 Sum_probs=71.6
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------------- 60 (230)
++++.+++..++|+.|-+=+ .+...++..+.++|++.|++|.-+....
T Consensus 58 ~~v~~i~~~t~~~~dvHLMv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~ 133 (230)
T d1rpxa_ 58 LVVDSLRPITDLPLDVHLMI----VEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTA 133 (230)
T ss_dssp HHHHHHGGGCCSCEEEEEES----SSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGG
T ss_pred HHHhhhhhccCceeeeeeee----cchhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHH
Confidence 45667766667777776543 3456778888888999998885421100
Q ss_pred -----------------CCCCCc----ccHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 61 -----------------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 61 -----------------~~~~~~----~~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
+|+.|. .-++-|+++++. .++.|.+-|||+ .+.+..+.+ .|||.+++|++++
T Consensus 134 l~~~l~~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~-~Gad~~V~GS~if 211 (230)
T d1rpxa_ 134 IEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIE-AGANALVAGSAVF 211 (230)
T ss_dssp GTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHH-HTCCEEEESHHHH
T ss_pred HHHHHhhCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEEECCcC-HHHHHHHHH-cCCCEEEEChHHH
Confidence 122221 124445554332 468899999995 457777665 8999999999999
Q ss_pred hCCccccch
Q 026945 115 ENPALFAGF 123 (230)
Q Consensus 115 ~nP~lf~~~ 123 (230)
.+++.-..+
T Consensus 212 ~~~d~~~~i 220 (230)
T d1rpxa_ 212 GAPDYAEAI 220 (230)
T ss_dssp TSSCHHHHH
T ss_pred CCCCHHHHH
Confidence 888755443
|
| >d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: RTS beta protein species: Xanthomonas campestris pv. campestris [TaxId: 340]
Probab=96.40 E-value=0.013 Score=46.85 Aligned_cols=93 Identities=9% Similarity=0.091 Sum_probs=57.8
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipv 83 (230)
-.+.++++++.+ ++.+.+-..-+|+.++++++++.+++.++.++. + . ..+.|+....++.+. .++||
T Consensus 45 di~~v~~vr~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~iE-------e--P-~~~~d~~~~~~~~~~~~~ipi 114 (252)
T d1yeya1 45 DIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWIE-------E--P-TSPDDVLGHAAIRQGITPVPV 114 (252)
T ss_dssp HHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCEE-------C--C-SCTTCHHHHHHHHHHSTTSCE
T ss_pred HHHHHHHHHHHhCCCceEeeccccCcchHHHHHHHHhhhhcCceeec-------C--C-cchhhHHHHHHHhhccCCCce
Confidence 334444444433 234444444445555555555555555555544 1 0 113467777776665 57999
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
.+.=.+.++.++.++++...+|.+++
T Consensus 115 a~gE~~~~~~~~~~~i~~~a~d~~~~ 140 (252)
T d1yeya1 115 STGEHTQNRVVFKQLLQAGAVDLIQI 140 (252)
T ss_dssp ECCTTCCSHHHHHHHHHHTCCSEECC
T ss_pred eccccccchhhhhhHhhccccceecc
Confidence 99889999999999999777898876
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.39 E-value=0.0022 Score=51.30 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=37.6
Q ss_pred cHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 68 DWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 68 ~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
+.+.+..+++.+ ++||+..+||+|++++.++.+ +||||.+|.++..
T Consensus 174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~--~ADgvIVGSaive 220 (231)
T d2f6ua1 174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLR--YADTIIVGNVIYE 220 (231)
T ss_dssp CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH--HSSEEEECHHHHH
T ss_pred hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHh--cCCEEEEChHHhc
Confidence 446666666655 599999999999999998764 6999999998754
|
| >d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Amycolatopsis sp. [TaxId: 37632]
Probab=96.39 E-value=0.014 Score=46.36 Aligned_cols=89 Identities=12% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 10 LVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 10 iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
.++++++.+ ++.+.+-..-+|+..+++++++ +++.++.+|. + .. .+.|++..+++++.+++||.+.-
T Consensus 47 ~i~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~-l~~~~~~~iE-------e--P~-~~~d~~~~~~l~~~~~~pia~gE 115 (242)
T d1sjda1 47 PVRAVRERFGDDVLLQVDANTAYTLGDAPQLAR-LDPFGLLLIE-------Q--PL-EEEDVLGHAELARRIQTPICLDE 115 (242)
T ss_dssp HHHHHHHHHCTTSEEEEECTTCCCGGGHHHHHT-TGGGCCSEEE-------C--CS-CTTCHHHHHHHHTTCSSCEEEST
T ss_pred HHHHHHHHhCCCeeEeeccccccchhhhhHHhh-hhhhhhHHHH-------h--hh-hhhhHHHHHHHHhccCccccccc
Confidence 344444443 4555555555667677777765 6777777665 1 11 24578999999999999999988
Q ss_pred CCCCHHHHHHHHHhhCCcEEEE
Q 026945 88 NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 88 gI~s~~da~~~l~~~gadgVmi 109 (230)
.+.+..++.++++...+|.+++
T Consensus 116 ~~~~~~~~~~~~~~~~~d~~~~ 137 (242)
T d1sjda1 116 SIVSARAAADAIKLGAVQIVNI 137 (242)
T ss_dssp TCCSHHHHHHHHHTTCCSEEEE
T ss_pred ccccchhhhhhhhcCccCEEEe
Confidence 9999999999999766898887
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.014 Score=46.01 Aligned_cols=78 Identities=27% Similarity=0.360 Sum_probs=65.0
Q ss_pred eEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHH
Q 026945 21 PVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 21 pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~ 100 (230)
||..=+|. .+.++...+++.+.+.|+..|.|.-|+.. -.+.|+.+++..+=-+++.|-|.|.++++++.+
T Consensus 16 ~iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitl~tp~---------a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~ 85 (213)
T d1wbha1 16 PVVPVIVV-KKLEHAVPMAKALVAGGVRVLNVTLRTEC---------AVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTE 85 (213)
T ss_dssp SEEEEECC-SSGGGHHHHHHHHHHTTCCEEEEESCSTT---------HHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHH
T ss_pred CEEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEeCCChh---------HHHHHHHHHHHCCCCeeeccccccHHHHHHHHH
Confidence 55555776 46688999999999999999999887642 368899999887655799999999999999987
Q ss_pred hhCCcEEEE
Q 026945 101 ETGCEGVLS 109 (230)
Q Consensus 101 ~~gadgVmi 109 (230)
.||+.++.
T Consensus 86 -aGa~FivS 93 (213)
T d1wbha1 86 -AGAQFAIS 93 (213)
T ss_dssp -HTCSCEEE
T ss_pred -CCCcEEEC
Confidence 89998876
|
| >d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.25 E-value=0.016 Score=46.01 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=39.4
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+.+|+..+++++.+++||.+.-.+.++.++.++++...+|.|++
T Consensus 93 ~~d~~~~~~l~~~~~ipia~gE~~~~~~~~~~~i~~~~~d~v~~ 136 (243)
T d1r0ma1 93 WDDLVDHAELARRIRTPLCLDESVASASDARKALALGAGGVINL 136 (243)
T ss_dssp TTCSHHHHHHHHHCSSCEEESTTCCSHHHHHHHHHHTSCSEEEE
T ss_pred ccchHHHHHHhhcCCcccccccchhhhhhhhhhhhcccccceec
Confidence 34789999999999999999889999999999999778898876
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.11 E-value=0.019 Score=48.88 Aligned_cols=97 Identities=19% Similarity=0.265 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-Cc
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 81 (230)
++...+.+....+.. ...|.+-+.+.. +..+.+..+.++|++.|.|..- +++. ..-.+.++.+++.. ++
T Consensus 79 ~~e~~~~~~~~~~~~~~~~v~aavGv~~---~~~er~~~l~~agvd~ivID~A-----~G~s-~~~~~~i~~ik~~~~~~ 149 (365)
T d1zfja1 79 ITEQAEEVRKVKRSEGRLLVAAAVGVTS---DTFERAEALFEAGADAIVIDTA-----HGHS-AGVLRKIAEIRAHFPNR 149 (365)
T ss_dssp HHHHHHHHHHHHHHTSCBCCEEEECSST---THHHHHHHHHHHTCSEEEECCS-----CTTC-HHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHhhhhhhccCceEEEEEeccCc---hHHHHHHHHHHcCCCEEEEECC-----cccc-cchhHHHHHHHhhCCCc
Confidence 344444455554433 334555454433 3557788888999999998532 1221 12246778887766 57
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
|||+ |+|-|++.+..+++ +|||+|-+|-
T Consensus 150 ~iIa-GNV~T~e~a~~L~~-aGaD~VkVGi 177 (365)
T d1zfja1 150 TLIA-GNIATAEGARALYD-AGVDVVKVGI 177 (365)
T ss_dssp CEEE-EEECSHHHHHHHHH-TTCSEEEECS
T ss_pred ceee-cccccHHHHHHHHh-cCCceEEeee
Confidence 7775 99999999999886 8999998884
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=96.10 E-value=0.013 Score=48.30 Aligned_cols=96 Identities=19% Similarity=0.185 Sum_probs=60.9
Q ss_pred hcCCceEEEEECC-----C--CChH-HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccH---HHHHHHHhhCCcc-E
Q 026945 16 LNLNVPVSCKIRV-----F--PNLQ-DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADW---NAIKAVKNALRIP-V 83 (230)
Q Consensus 16 ~~~~~pvsvKiR~-----g--~~~~-~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~---~~i~~i~~~~~ip-v 83 (230)
...++|+.+=+=. . .+.. .....++.+.+.|+|.+-+---. ......| ....++....++| |
T Consensus 150 ~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaDi~K~~~p~------~~~~~~~~~~~~~~~~~~~~~~p~v 223 (291)
T d1to3a_ 150 HSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPL------YGKGARSDLLTASQRLNGHINMPWV 223 (291)
T ss_dssp HTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGG------GGCSCHHHHHHHHHHHHHTCCSCEE
T ss_pred HHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCcEEEEecCC------CchhhhHHHHHHHHHHhhcCCCcEE
Confidence 3458998875422 1 1212 35677888889999988753210 0012233 3455666677899 6
Q ss_pred EEcCCCCCHHHHHHHHH---hhCCcEEEEehhhhhCCc
Q 026945 84 LANGNVRHMEDVQKCLE---ETGCEGVLSAESLLENPA 118 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~---~~gadgVmigR~~l~nP~ 118 (230)
+.+||. +.+++.+.++ ..||.|+++||.+..+|-
T Consensus 224 vLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~~~ 260 (291)
T d1to3a_ 224 ILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSSVI 260 (291)
T ss_dssp ECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGGGT
T ss_pred EEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhCcc
Confidence 677776 4556655443 379999999999998874
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.05 E-value=0.026 Score=47.36 Aligned_cols=97 Identities=20% Similarity=0.310 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-Cc
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RI 81 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~i 81 (230)
+|+...+.++.+++. ..++.+=+.+.++ ..+.++.+.++|++.++|..- +++. ..-.+.++.+++.. ++
T Consensus 71 ~~e~~~~~i~~vk~~-~~~v~~~vgv~~~---~~e~~~~li~agvd~ivId~A-----~G~~-~~~~~~ik~ik~~~~~~ 140 (330)
T d1vrda1 71 TPDEQARQVSIVKKT-RLLVGAAVGTSPE---TMERVEKLVKAGVDVIVIDTA-----HGHS-RRVIETLEMIKADYPDL 140 (330)
T ss_dssp CHHHHHHHHHHHHTC-CBCCEEEECSSTT---HHHHHHHHHHTTCSEEEECCS-----CCSS-HHHHHHHHHHHHHCTTS
T ss_pred chhhhHHHHHHHhhh-ccEEEEEEecCHH---HHHHHHHHHHCCCCEEEEecC-----CCCc-hhHHHHHHHHHHhCCCC
Confidence 566777777777653 3445544444333 557788889999999998532 1221 12346777787765 57
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
||++ |+|.|++.++.+.+ .|||+|-+|-
T Consensus 141 ~via-GnV~t~~~a~~l~~-~GaD~v~VGi 168 (330)
T d1vrda1 141 PVVA-GNVATPEGTEALIK-AGADAVKVGV 168 (330)
T ss_dssp CEEE-EEECSHHHHHHHHH-TTCSEEEECS
T ss_pred CEEe-echhHHHHHHHHHH-cCCCEEeecc
Confidence 7776 99999999998776 8999998864
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.93 E-value=0.024 Score=44.01 Aligned_cols=107 Identities=12% Similarity=0.245 Sum_probs=62.5
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecCCCCCc-------C------CC-----------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGRTRDEK-------D------GK----------- 63 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~rt~~~~-------~------~~----------- 63 (230)
+.++++++..+.||.+-+.+. |..++ ...++.+.++|++++|||+...... . ..
T Consensus 41 ~~i~~l~~~~~~~if~DlK~~-Di~~t~~~~~~~~~~~gad~~Tvh~~~g~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~ 119 (206)
T d2czda1 41 DIIRRLKEETGVEIIADLKLA-DIPNTNRLIARKVFGAGADYVIVHTFVGRDSVMAVKELGEIIMVVEMSHPGALEFINP 119 (206)
T ss_dssp THHHHHHHHHCCEEEEEEEEC-SCHHHHHHHHHHHHHTTCSEEEEESTTCHHHHHHHHTTSEEEEECCCCSGGGGTTTGG
T ss_pred HHHHHHHHhcCCeEEEEeeee-eecccchheehhhccccccEEEeeecccHHHHHHhhhcccceEEEeccCCcccccccH
Confidence 345666655577776655554 44443 4667888899999999997531100 0 00
Q ss_pred ------------------CCcccHHHHHHHHhhCC--ccEEEcCCCCC-HHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 64 ------------------KFRADWNAIKAVKNALR--IPVLANGNVRH-MEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 64 ------------------~~~~~~~~i~~i~~~~~--ipvi~nGgI~s-~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+....+.+..+++..+ +.+ ..+||+. ..+..++++ .|+|.+.+||++...++
T Consensus 120 ~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~r~~~~~~~~i-~~pGI~~~~~~~~~ai~-~Gad~iVvGR~I~~a~d 193 (206)
T d2czda1 120 LTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLKEGIKI-LAPGIGAQGGKAKDAVK-AGADYIIVGRAIYNAPN 193 (206)
T ss_dssp GHHHHHHHHHHHCCSEEECCCSSTHHHHHHHHHSCTTCEE-EECCCCSSTTHHHHHHH-HTCSEEEECHHHHTSSS
T ss_pred HHHHHHHHHHhcccccccccccCchhhhhhhhhhcccceE-ECCCccccCCCHHHHHH-hCCCEEEEChhhccCCC
Confidence 00112334555555443 333 4455532 335566665 79999999999987544
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.93 E-value=0.014 Score=50.02 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEE---------CCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKI---------RVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIK 73 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKi---------R~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~ 73 (230)
+|+...+-++.+++..+.|+..+. .++.. ++..+.++.+.++|++.++++.-.... ..-.+.++
T Consensus 80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~-~~~~~~~~~l~~agv~vi~id~a~g~~------~~~~~~i~ 152 (378)
T d1jr1a1 80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTH-EDDKYRLDLLALAGVDVVVLDSSQGNS------IFQINMIK 152 (378)
T ss_dssp CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSS-THHHHHHHHHHHHTCCEEEECCSSCCS------HHHHHHHH
T ss_pred CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccC-HHHHHHHHHHHhhccceEeeeccCccc------hhhHHHHH
Confidence 566777777777766555543321 11222 445667888999999999997753321 11246677
Q ss_pred HHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehh
Q 026945 74 AVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAES 112 (230)
Q Consensus 74 ~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~ 112 (230)
.+++.. ++||+ .|+|.|++.+..+++ +|||+|-+|-|
T Consensus 153 ~ik~~~~~~~iI-aGnVaT~e~a~~L~~-aGAD~VkVGiG 190 (378)
T d1jr1a1 153 YMKEKYPNLQVI-GGNVVTAAQAKNLID-AGVDALRVGMG 190 (378)
T ss_dssp HHHHHSTTCEEE-EEEECSHHHHHHHHH-HTCSEEEECSS
T ss_pred HHHHHCCCCcee-ecccccHHHHHHHHH-hCCCEEeeccc
Confidence 887766 56766 599999999998875 89999987754
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=95.88 E-value=0.035 Score=44.85 Aligned_cols=76 Identities=18% Similarity=0.211 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++.+++.|+++|.|..-.. .+. -+++.+..+++.+++||..--=|-++-++.+... .|||+|.+--++
T Consensus 66 dp~~~A~~y~~~GA~aiSVLTe~~----~F~--Gs~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~-~GADaVLLIaal 138 (254)
T d1vc4a_ 66 DPVEAALAYARGGARAVSVLTEPH----RFG--GSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARA-FGASAALLIVAL 138 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCS----SSC--CCHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEEHHH
T ss_pred CHHHHHHHHHhcCCceEEEEcCcc----ccc--ccHHHHHHHHHHcCCCcccCCccccHHHHHHHHh-ccchHHHHHHHH
Confidence 578899999999999999976322 132 3578899999999999999999999999999886 899999887666
Q ss_pred hhC
Q 026945 114 LEN 116 (230)
Q Consensus 114 l~n 116 (230)
+.+
T Consensus 139 l~~ 141 (254)
T d1vc4a_ 139 LGE 141 (254)
T ss_dssp HGG
T ss_pred HHH
Confidence 544
|
| >d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: D-glucarate dehydratase species: Escherichia coli [TaxId: 562]
Probab=95.80 E-value=0.038 Score=45.70 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc-CCCCCcccHHHHHHHHhhCCc
Q 026945 4 LPLVKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK-DGKKFRADWNAIKAVKNALRI 81 (230)
Q Consensus 4 p~~~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~-~~~~~~~~~~~i~~i~~~~~i 81 (230)
++.-.+.++++++++ +..+.+-..-+|+.++++++++.++ .++.++. +- .......+.+..+++++.+++
T Consensus 76 ~~~di~~v~avr~~~pd~~l~vDaN~~~s~~~Ai~~~~~le-~~l~w~E-------EPv~~~d~~~~~~~l~~lr~~~~i 147 (309)
T d1jdfa1 76 GEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLK-GSLAYAE-------DPCGAEQGFSGREVMAEFRRATGL 147 (309)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECTTBBCHHHHHHHHHHTT-TTCSCEE-------SCBCCBTTBCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHCCCCeEEeeccCCCCHHHHHHHHHHHh-hcchhhh-------hhcccCcchhhHHHHHHhhccccc
Confidence 444556666666655 3445554455567777777777765 4666654 10 000011235778899999999
Q ss_pred cEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 82 PVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 82 pvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
||.++-.+.+..++.++++...+|.++
T Consensus 148 pIa~gE~~~~~~~~~~~i~~~a~di~~ 174 (309)
T d1jdfa1 148 PTATNMIATDWRQMGHTLSLQSVDIPL 174 (309)
T ss_dssp CEEESSSSSSHHHHHHHHHHTCCSEEB
T ss_pred ceecCcccchhhhhhhhhhhccceeee
Confidence 999999999999999999976677544
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=95.78 E-value=0.13 Score=40.94 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=61.9
Q ss_pred HHHHHHHHhhcCCceEEEEECC--C-----CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHH-Hhh
Q 026945 7 VKSLVEKLALNLNVPVSCKIRV--F-----PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAV-KNA 78 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~--g-----~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i-~~~ 78 (230)
+.+++++.. ..++|+.+=.-. + .+.+.....++...+.|+|.+-+- + +-+.+...++ ...
T Consensus 125 ~~~v~~e~~-~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~---------~--p~~~~~~~~~v~~a 192 (251)
T d1ojxa_ 125 LARIKRDAV-KFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKIK---------Y--TGDPKTFSWAVKVA 192 (251)
T ss_dssp HHHHHHHHH-HHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEC---------C--CSSHHHHHHHHHHT
T ss_pred HHHHHHHHH-HcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEec---------C--CCcHHHHHHHHHhc
Confidence 344444443 348998765533 1 123445556788889999999851 2 2233555554 445
Q ss_pred CCccEEEcCCC--CCHHHHHHHHHh---hCCcEEEEehhhhhCC
Q 026945 79 LRIPVLANGNV--RHMEDVQKCLEE---TGCEGVLSAESLLENP 117 (230)
Q Consensus 79 ~~ipvi~nGgI--~s~~da~~~l~~---~gadgVmigR~~l~nP 117 (230)
..+||+..||= .+.+++.+..+. .||.|+++||.+...|
T Consensus 193 ~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~ 236 (251)
T d1ojxa_ 193 GKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR 236 (251)
T ss_dssp TTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred CCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcC
Confidence 67888777664 467777655432 6999999999887443
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.69 E-value=0.011 Score=50.79 Aligned_cols=72 Identities=21% Similarity=0.296 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 33 QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 33 ~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
.+..+.+..|.++|+|.|.|..-. ++. ..-.+.++.+++.. ++|||+ |+|-|++.+..+++ +|||+|-+|-
T Consensus 150 ~~~~~ra~~L~~aG~D~ivID~Ah-----G~s-~~~~~~i~~ik~~~~~v~vIa-GNV~T~e~a~~L~~-~GaD~VkVGi 221 (388)
T d1eepa_ 150 IDTIERVEELVKAHVDILVIDSAH-----GHS-TRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLIS-VGADCLKVGI 221 (388)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSC-----CSS-HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHT-TTCSEEEECS
T ss_pred HHHHHHHHHHHhhccceeeeeccc-----cch-HHHHHHHHHHHHHCCCCceee-ccccCHHHHHHHHh-cCCCeeeecc
Confidence 456788999999999999996422 221 12357888887765 588776 99999999999886 8999998875
Q ss_pred h
Q 026945 112 S 112 (230)
Q Consensus 112 ~ 112 (230)
|
T Consensus 222 G 222 (388)
T d1eepa_ 222 G 222 (388)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.062 Score=44.07 Aligned_cols=119 Identities=13% Similarity=0.206 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC--ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc----ccHHHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP--NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR----ADWNAIKAVK 76 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~--~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~----~~~~~i~~i~ 76 (230)
..+.+.+.++.|.+++++||++-.=.|. +..+..+.++.++++|+..+++-..+...+.+..+. ..-+.+.+++
T Consensus 61 ~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~ 140 (289)
T d1muma_ 61 TLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIR 140 (289)
T ss_dssp CHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHH
Confidence 3556777888888899999999998875 346888999999999999999987654433332211 1234555554
Q ss_pred hh---C---CccEEEcCCCCC---HHHHHH---HHHhhCCcEEEEehhhhhCCccccch
Q 026945 77 NA---L---RIPVLANGNVRH---MEDVQK---CLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 77 ~~---~---~ipvi~nGgI~s---~~da~~---~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.. . ++-|++--|... .+++.+ +..+.|||+|++- .+.++...+.+
T Consensus 141 aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~--~~~~~~~~~~~ 197 (289)
T d1muma_ 141 AAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPE--AITELAMYRQF 197 (289)
T ss_dssp HHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEET--TCCCHHHHHHH
T ss_pred HHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcCCcEEEec--CCCCHHHHHHH
Confidence 43 2 244555555443 344432 2235899999872 23344444433
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=95.69 E-value=0.021 Score=45.13 Aligned_cols=107 Identities=15% Similarity=0.286 Sum_probs=67.0
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------------
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------------- 60 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------------- 60 (230)
++++.+++.+++|+.|-+=+ .+...+++.+.++|++.+++|.-+....
T Consensus 50 ~~~~~i~~~t~~~~dvHLMv----~~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~ 125 (221)
T d1tqja_ 50 LIVDAIRPLTKKTLDVHLMI----VEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDF 125 (221)
T ss_dssp HHHHHHGGGCCSEEEEEEES----SSGGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGG
T ss_pred HhHHhhhhccCcceeeeEEE----eCHHHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHH
Confidence 45677777677777776543 2233566777777788777775321100
Q ss_pred -----------------CCCCCc----ccHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 61 -----------------DGKKFR----ADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 61 -----------------~~~~~~----~~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.|+.|. .-++-++++++. .+++|..-|||+ .+.+..+.+ .|||.+.+|++++
T Consensus 126 l~~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn-~~~i~~l~~-~Gad~~V~GS~if 203 (221)
T d1tqja_ 126 LEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVLE-AGANAIVAGSAVF 203 (221)
T ss_dssp GTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTTHHHHH-HTCCEEEESHHHH
T ss_pred HHHHHhhhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEEECCcC-HHHHHHHHH-cCCCEEEEChHHh
Confidence 111121 124555555442 368899999996 456766665 8999999999998
Q ss_pred hCCcccc
Q 026945 115 ENPALFA 121 (230)
Q Consensus 115 ~nP~lf~ 121 (230)
.+++.-.
T Consensus 204 ~~~d~~~ 210 (221)
T d1tqja_ 204 NAPNYAE 210 (221)
T ss_dssp TSSCHHH
T ss_pred CCCCHHH
Confidence 8887443
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=95.67 E-value=0.049 Score=42.84 Aligned_cols=107 Identities=9% Similarity=0.176 Sum_probs=64.9
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDA-GCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~-G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
..+++..+++. ++-+.+-+....+.+....+ +... -++.+.+-.-.........-+.-++-++++++.. ++++.
T Consensus 97 ~~~~i~~i~~~-g~~~Glal~p~t~~~~~~~~---l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~ 172 (220)
T d1h1ya_ 97 WQELIQSIKAK-GMRPGVSLRPGTPVEEVFPL---VEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIE 172 (220)
T ss_dssp HHHHHHHHHHT-TCEEEEEECTTSCGGGGHHH---HHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHHHc-CCCcceeeccccchhHHHHH---HhcccccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEE
Confidence 34566666554 45555556654443332222 3332 3677776554322110001123477788887754 58999
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+-|||+ .+.+..+.+ .|||.+.+|++++.+++.
T Consensus 173 VDGGIn-~~~i~~l~~-aGad~~V~GS~if~~~d~ 205 (220)
T d1h1ya_ 173 VDGGLG-PSTIDVAAS-AGANCIVAGSSIFGAAEP 205 (220)
T ss_dssp EESSCS-TTTHHHHHH-HTCCEEEESHHHHTSSCH
T ss_pred EEecCC-HHHHHHHHH-CCCCEEEECHHHHCCCCH
Confidence 999996 456666664 899999999998887764
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.58 E-value=0.082 Score=41.83 Aligned_cols=97 Identities=13% Similarity=0.156 Sum_probs=60.2
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCC---CChHHHHHHHHHHHHcCCCEEEEecCCCCC----cCCCCCcccHH---HH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVF---PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE----KDGKKFRADWN---AI 72 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g---~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~----~~~~~~~~~~~---~i 72 (230)
+.+.+.+-+.++++.++ +..+|+=+- .+.++....++.+.++|+|+|-=+...... ..+.+-++..+ .+
T Consensus 96 ~~~~v~~ei~~v~~~~~-~~~lKVIlEt~~L~~~ei~~~~~~~~~aGadFIKTSTGf~~~g~~~~~~~~~~at~~~~~~~ 174 (226)
T d1vcva1 96 RWAEVRRDLISVVGAAG-GRVVKVITEEPYLRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAI 174 (226)
T ss_dssp CHHHHHHHHHHHHHHTT-TSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhccC-CCeEEEEecccccCHHHHHHHHHHHHHcCcceeeecccccCCcccccccCcccCcHHHHHHH
Confidence 45666666777777663 334565442 355667788888999999999744332110 00111123334 44
Q ss_pred HHHHhhC--CccEEEcCCCCCHHHHHHHHH
Q 026945 73 KAVKNAL--RIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 73 ~~i~~~~--~ipvi~nGgI~s~~da~~~l~ 100 (230)
+++.+.. ++-|=++|||+|.+++.++++
T Consensus 175 ~~~~~~~g~~vgiKasGGIrt~~~A~~~i~ 204 (226)
T d1vcva1 175 ARYIKEKGYRLGVKMAGGIRTREQAKAIVD 204 (226)
T ss_dssp HHHHHHHTCCCEEEEESSCCSHHHHHHHHH
T ss_pred HHHHHHhCCceeEECcCCCCCHHHHHHHHH
Confidence 4444432 477889999999999999997
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.047 Score=42.54 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=65.5
Q ss_pred EEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHH
Q 026945 22 VSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLE 100 (230)
Q Consensus 22 vsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~ 100 (230)
|..=+|. .+.+++..+++.+.+.|+..+.|.-|+.. -++.|+++++.. +--+++.|-|.|.++++++.+
T Consensus 11 iipvlr~-~~~~~a~~~~~al~~~Gi~~iEitlr~p~---------a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~ 80 (202)
T d1wa3a1 11 IVAVLRA-NSVEEAKEKALAVFEGGVHLIEITFTVPD---------ADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVE 80 (202)
T ss_dssp EEEEECC-SSHHHHHHHHHHHHHTTCCEEEEETTSTT---------HHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHH
T ss_pred EEEEEEC-CCHHHHHHHHHHHHHcCCCEEEEecCCcc---------HHHHHHHHHHhcCCCcEEEecccccHHHHHHHHh
Confidence 3333675 45788999999999999999999877532 357888876533 555789999999999999987
Q ss_pred hhCCcEEEEehhhhhCCccccch
Q 026945 101 ETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 101 ~~gadgVmigR~~l~nP~lf~~~ 123 (230)
.||+.++. --.||++....
T Consensus 81 -aGa~fivs---P~~~~~v~~~~ 99 (202)
T d1wa3a1 81 -SGAEFIVS---PHLDEEISQFC 99 (202)
T ss_dssp -HTCSEEEC---SSCCHHHHHHH
T ss_pred -hcccEEeC---CCCcHHHHHHH
Confidence 89998762 12355555543
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.57 E-value=0.13 Score=40.33 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
...+.++.+++. ++-+.+-+....+.+. +...+....+|++.+-+-........--+.-++-|+++++.. ++.+.
T Consensus 99 ~~~~~i~~i~~~-g~~~Gial~p~t~~~~---~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~ 174 (221)
T d1tqxa_ 99 RCIQLAKEIRDN-NLWCGISIKPKTDVQK---LVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQ 174 (221)
T ss_dssp HHHHHHHHHHTT-TCEEEEEECTTSCGGG---GHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEE
T ss_pred hhhHHHHHHHhc-CCeEEEeecccccccc---chhhcccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceE
Confidence 344555555543 5556666665433332 223333355888866554322110011133567778887764 58888
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+-|||+ .+.+..+.+ .|||.+.+|++++.+++.
T Consensus 175 VDGGIn-~~~i~~l~~-aGad~iV~GS~if~~~d~ 207 (221)
T d1tqxa_ 175 VDGGLN-IETTEISAS-HGANIIVAGTSIFNAEDP 207 (221)
T ss_dssp EESSCC-HHHHHHHHH-HTCCEEEESHHHHTCSSH
T ss_pred EEcccC-HHhHHHHHH-cCCCEEEEChHHHCCCCH
Confidence 999994 677877775 899999999998887664
|
| >d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Citrobacter amalonaticus [TaxId: 35703]
Probab=95.28 E-value=0.08 Score=42.51 Aligned_cols=101 Identities=12% Similarity=0.148 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHhhcCC--ceEEEEEC------CCCChHHHHHHHHHHHHcCCCE-EEEecCCCCCc-CCCCCcccHHHHH
Q 026945 4 LPLVKSLVEKLALNLN--VPVSCKIR------VFPNLQDTIKYAKMLEDAGCSL-LAVHGRTRDEK-DGKKFRADWNAIK 73 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~--~pvsvKiR------~g~~~~~~~~~a~~l~~~G~~~-i~vh~rt~~~~-~~~~~~~~~~~i~ 73 (230)
++.+.+.|++++.+.+ +.+.+-+. .+|+.+++.++++.|.+.+.++ |.| +|- .....+.||+..+
T Consensus 55 ~~~~~~rI~~~r~~~G~~~~i~iD~~~~~~~~~~~~~~~ai~~l~~L~~~~~~~~l~I-----EqP~~~~~~~~d~~gl~ 129 (251)
T d1kkoa1 55 VRWLSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYI-----EGPVDAGNKPDQIRMLT 129 (251)
T ss_dssp HHHHHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTCHHHHHHHHHHTGGGGTTSCEEE-----ECCCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCCcceeeccccccccccCCCHHHHHHHHHHHHHhcCCCceee-----cCCcccccchHHHHHHH
Confidence 3444556666666654 33434322 1588889999999999887765 222 221 0011134678788
Q ss_pred HHHhh-----CCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 74 AVKNA-----LRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 74 ~i~~~-----~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
++++. .++||++.=.+.|++++.++++...||.|.+
T Consensus 130 ~l~~~l~~~g~~vpI~~DE~~~t~~d~~~~i~~~a~d~v~i 170 (251)
T d1kkoa1 130 AITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQI 170 (251)
T ss_dssp HHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHhccCCCceEeccceeCCHHHHHHHHHhCCccceec
Confidence 77665 4699999888999999999998888999987
|
| >d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: N-acylamino acid racemase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.28 E-value=0.068 Score=41.94 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 67 ADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 67 ~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
-+++..+++++..++||.+.-.+.++.++..+++...+|.+++--+-+
T Consensus 94 ~~~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~~~d~i~~d~~~~ 141 (241)
T d1wuea1 94 DDFLDHAQLQRELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRV 141 (241)
T ss_dssp TCSHHHHHHHTTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred cchhhhhhhhcccccccccCcccccchhhhhhhhhhhhhhhccccccc
Confidence 368899999999999999988999999999999977799998854333
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=95.27 E-value=0.23 Score=40.22 Aligned_cols=117 Identities=15% Similarity=0.180 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCC-ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-C----Cccc-HHHHHHH
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFP-NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-K----FRAD-WNAIKAV 75 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~-~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~----~~~~-~~~i~~i 75 (230)
..+.+.+.++.|.+++++||++-+-.|. +..+..+.++.++++|+..|++-..+...+.+. . ...+ -+.+.++
T Consensus 60 t~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki 139 (275)
T d1s2wa_ 60 SWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKI 139 (275)
T ss_dssp -CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHH
T ss_pred chhhHHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHH
Confidence 3456778888999999999999999886 456888999999999999999988654322211 1 1122 2223333
Q ss_pred H---hh-C--CccEEEcCCCC----CHHHHHHHH---HhhCCcEEEEehhhhhCCccc
Q 026945 76 K---NA-L--RIPVLANGNVR----HMEDVQKCL---EETGCEGVLSAESLLENPALF 120 (230)
Q Consensus 76 ~---~~-~--~ipvi~nGgI~----s~~da~~~l---~~~gadgVmigR~~l~nP~lf 120 (230)
+ +. . ++-|++--|-. ..+++.+.. .+.|||+|++ -|.-.+|...
T Consensus 140 ~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~-~~~~~~~~~~ 196 (275)
T d1s2wa_ 140 KACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRNAGADAILM-HSKKADPSDI 196 (275)
T ss_dssp HHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEE-CCCSSSSHHH
T ss_pred HhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHhcCCCeeee-ccccCcHHHH
Confidence 2 22 2 34566655642 356665322 3589999987 2333344443
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.018 Score=44.01 Aligned_cols=107 Identities=18% Similarity=0.189 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHHHHHHHhhCCcc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ip 82 (230)
++.+.++++..++. +.-+.+-.-...+ .+.+..+.+.|++.+.+|.....+..+. .....++.+++.+. .++|
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~-~~~~ 163 (213)
T d1q6oa_ 90 INTAKGALDVAKEF-NGDVQIELTGYWT----WEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFK 163 (213)
T ss_dssp HHHHHHHHHHHHHT-TCEEEEEECSCCC----HHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHH-TTCE
T ss_pred chHHHHHHHHHHHc-CCceecccCCCCC----HHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhc-cCce
Confidence 45556666666543 3333332222122 2345667778888888764322111111 11223444544443 4688
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+...||+ +++++.++++ .|+|++++||+++..++
T Consensus 164 i~~~gGi-~~~~~~~~~~-~Gad~iVVGr~I~~a~d 197 (213)
T d1q6oa_ 164 VTVTGGL-ALEDLPLFKG-IPIHVFIAGRSIRDAAS 197 (213)
T ss_dssp EEEESSC-CGGGGGGGTT-SCCSEEEESHHHHTSSC
T ss_pred EecCCCc-CcCCHHHHHH-cCCCEEEEChhhcCCCC
Confidence 8888888 5888888876 89999999999876433
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=95.10 E-value=0.13 Score=42.95 Aligned_cols=98 Identities=16% Similarity=0.317 Sum_probs=69.4
Q ss_pred HHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCC-CCcccHHHHHHHHhhCCccEEEc---
Q 026945 11 VEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGK-KFRADWNAIKAVKNALRIPVLAN--- 86 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~-~~~~~~~~i~~i~~~~~ipvi~n--- 86 (230)
+.++.+ ++.||.+|--...+.+++...++.+...|...|.+--|.....+++ ....|+..+..+++....||+..
T Consensus 194 L~~~g~-t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~~~~~lD~~~i~~~k~~~~lPVi~DpsH 272 (338)
T d1vr6a1 194 LSKAGS-YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSH 272 (338)
T ss_dssp HHHHHT-TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSSCEEECHHH
T ss_pred HHHhhc-cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccccccccchhhcccceeeccccCceeeCCCC
Confidence 444533 5899999988777889999999999999988887766543211112 22468888999998888999973
Q ss_pred -CCCCCH--HHHHHHHHhhCCcEEEEe
Q 026945 87 -GNVRHM--EDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 87 -GgI~s~--~da~~~l~~~gadgVmig 110 (230)
||-+.. .-+...+. .||||+|+=
T Consensus 273 s~G~r~~v~~larAAvA-~GadGl~iE 298 (338)
T d1vr6a1 273 SGGRRDLVIPLSRAAIA-VGAHGIIVE 298 (338)
T ss_dssp HHCSGGGHHHHHHHHHH-HTCSEEEEE
T ss_pred CCCchhHHHHHHHHHHH-hCCCEEEEE
Confidence 444332 23345554 799999994
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=94.93 E-value=0.054 Score=43.85 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHH---HHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKC---LEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~---l~~~gad 105 (230)
|.+...+.++.+.+.|++.|.+.|-|.+... .+..=....++.+.+.+ ++||++.-+-.|.+++.+. .++.|+|
T Consensus 22 D~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~-Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad 100 (292)
T d1xkya1 22 DFAKTTKLVNYLIDNGTTAIVVGGTTGESPT-LTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 100 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHCCCCEEEECeEccchhh-CCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence 5567889999999999999999887766421 11111234455555544 5899877666666666544 3458999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+.-..+..|
T Consensus 101 ~ilv~pP~~~~~ 112 (292)
T d1xkya1 101 AVMLVAPYYNKP 112 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEECCCCCCCC
Confidence 999987665554
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.011 Score=46.44 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=46.6
Q ss_pred HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 43 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 43 ~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
.+.|++.+-+++-. . .| -.+++.++.-+ ++|++..||| |.+++.+.++ .|+.+|.+|+.+..
T Consensus 120 ~~~G~~~lK~fPa~---~---~G---~~~lk~l~~p~p~i~~iptGGI-~~~n~~~~l~-aga~avg~Gs~l~~ 182 (202)
T d1wa3a1 120 MKLGHTILKLFPGE---V---VG---PQFVKAMKGPFPNVKFVPTGGV-NLDNVCEWFK-AGVLAVGVGSALVK 182 (202)
T ss_dssp HHTTCCEEEETTHH---H---HH---HHHHHHHHTTCTTCEEEEBSSC-CTTTHHHHHH-HTCSCEEECHHHHC
T ss_pred HHCCCCEEEecchh---h---cC---HHHHHHHhCcccCCcEEeeCCC-CHHHHHHHHH-CCCeEEEEchhhcC
Confidence 46677777765521 0 11 26778887765 5999999999 7899999997 79999999987764
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.081 Score=43.31 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=56.0
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCH-HHHHHHHHhhCCcEEEEehhhh
Q 026945 37 KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHM-EDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 37 ~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~-~da~~~l~~~gadgVmigR~~l 114 (230)
+..+-+++.|+|.|.|.-.|.-..+...+..|++.++++++.+++|++.-|+=..+ +++.++.+ .|+.-|=|++.+-
T Consensus 158 ea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~-~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 158 EAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIE-LGVTKVNVATELK 235 (284)
T ss_dssp HHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHH-TTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHH-cCeEEEEechHHH
Confidence 34444567899999997776654433334578999999999999999999976554 45556665 8888888877543
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=94.73 E-value=0.095 Score=43.05 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcC---C-CCCcccHHHHHHHHhhCCccEEE--cCCCCCHHHHHHHHHhhCCcEEE
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKD---G-KKFRADWNAIKAVKNALRIPVLA--NGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~---~-~~~~~~~~~i~~i~~~~~ipvi~--nGgI~s~~da~~~l~~~gadgVm 108 (230)
.....+..+..|.+.+.+|.-...... + ......|+.++++++..+.|++. .|.+.+++++..+.+ .|+|+|.
T Consensus 109 ~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~a~~~~~-~GaD~i~ 187 (329)
T d1p0ka_ 109 AAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE-AGAAAVD 187 (329)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHHHHHHHh-cCCCEEE
Confidence 345566778899999988865432110 1 11233588999999999888885 788899999999876 8999998
Q ss_pred Ee
Q 026945 109 SA 110 (230)
Q Consensus 109 ig 110 (230)
++
T Consensus 188 v~ 189 (329)
T d1p0ka_ 188 IG 189 (329)
T ss_dssp EE
T ss_pred Ec
Confidence 84
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.63 E-value=0.062 Score=40.65 Aligned_cols=94 Identities=7% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEE
Q 026945 8 KSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~ 85 (230)
.+.++.+++.. ..+|.|-.+ ..+-++.+.++|+|.|-+-.-+.++ --+.++.++... .+.+.+
T Consensus 67 ~~~i~~~k~~~~~~~I~VEv~-------s~~q~~~a~~~~~diImLDN~sp~~--------~k~~v~~~~~~~~~i~lEa 131 (169)
T d1qpoa1 67 VDALRAVRNAAPDLPCEVEVD-------SLEQLDAVLPEKPELILLDNFAVWQ--------TQTAVQRRDSRAPTVMLES 131 (169)
T ss_dssp HHHHHHHHHHCTTSCEEEEES-------SHHHHHHHGGGCCSEEEEETCCHHH--------HHHHHHHHHHHCTTCEEEE
T ss_pred hhhhhhhhhhcCCCceEEEec-------cHHHhhhhhhcCCcEEEecCcChHh--------HHHHHHHhhccCCeeEEEE
Confidence 45666666543 456666654 3455677888999999886543321 124445555443 477889
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
+||| +++.+.++.+ +|+|.+.+|.-...-|+
T Consensus 132 SGgI-~~~ni~~ya~-~GvD~IS~galt~sa~~ 162 (169)
T d1qpoa1 132 SGGL-SLQTAATYAE-TGVDYLAVGALTHSVRV 162 (169)
T ss_dssp ESSC-CTTTHHHHHH-TTCSEEECGGGTSSBCC
T ss_pred eCCC-CHHHHHHHHH-cCCCEEECCccccCCCc
Confidence 9999 6888888775 99999999854443354
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.48 E-value=0.094 Score=42.55 Aligned_cols=87 Identities=22% Similarity=0.340 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHH---hhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~---~~gad 105 (230)
|.+...+.++.+.+.|++.|.+-|-+.+... .+..=..+.++.+.+.+ ++||++.-+-.|.+++.+..+ +.|+|
T Consensus 26 D~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~-Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad 104 (296)
T d1xxxa1 26 DTATAARLANHLVDQGCDGLVVSGTTGESPT-TTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 104 (296)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSTTTTTTT-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhh-CCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcCC
Confidence 5567788999999999999999887765321 11111123334444443 488886655566666654443 47999
Q ss_pred EEEEehhhhhCCc
Q 026945 106 GVLSAESLLENPA 118 (230)
Q Consensus 106 gVmigR~~l~nP~ 118 (230)
++|+.-..+..|.
T Consensus 105 ~v~i~~P~~~~~~ 117 (296)
T d1xxxa1 105 GLLVVTPYYSKPP 117 (296)
T ss_dssp EEEEECCCSSCCC
T ss_pred eEEEEeccCCCCC
Confidence 9999988777654
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=94.42 E-value=0.088 Score=42.53 Aligned_cols=103 Identities=17% Similarity=0.235 Sum_probs=65.2
Q ss_pred HHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~ 70 (230)
+.+.++.+++.-..-+..=+-.| |+.+.+.++++.+.++|+|.|.+-=-..+.. ++..-.--++
T Consensus 4 i~~~f~~~~~~~~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~ 83 (261)
T d1rd5a_ 4 VSDTMAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLE 83 (261)
T ss_dssp HHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhh
Confidence 45666777665433333445555 5788899999999999999999963221110 1111111256
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHH-HHHHHhhCCcEEEE
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDV-QKCLEETGCEGVLS 109 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da-~~~l~~~gadgVmi 109 (230)
.++++++..++|++.-+-.+..-.. .+.+.+.|+||+++
T Consensus 84 ~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~Ii 123 (261)
T d1rd5a_ 84 MLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIV 123 (261)
T ss_dssp HHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEEC
T ss_pred hhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeee
Confidence 6777777788999987765432211 23345689999998
|
| >d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: beta-Methylaspartase species: Clostridium tetanomorphum [TaxId: 1553]
Probab=94.33 E-value=0.17 Score=40.51 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCChHHHHHHHHHHHHcCCCEE-EEecCCCCCcCC-CCCcccHHHHHHHHhh-----CCccEEEcCCCCCHHHHHHHHHh
Q 026945 29 FPNLQDTIKYAKMLEDAGCSLL-AVHGRTRDEKDG-KKFRADWNAIKAVKNA-----LRIPVLANGNVRHMEDVQKCLEE 101 (230)
Q Consensus 29 g~~~~~~~~~a~~l~~~G~~~i-~vh~rt~~~~~~-~~~~~~~~~i~~i~~~-----~~ipvi~nGgI~s~~da~~~l~~ 101 (230)
+|+.+++++++..|++.+..+. .+ +|--. ...+.+.+..+++++. .++||++.=.++|++|+.++++.
T Consensus 88 ~~~~~eai~~~~~L~~~~~~y~i~i-----EqP~~~~d~~~~~e~~a~lr~~~~~~g~~vpI~~DE~~~~~~d~~~~i~~ 162 (253)
T d1kcza1 88 DVDIKAMADYIQTLAEAAKPFHLRI-----EGPMDVEDRQKQMEAMRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDN 162 (253)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCEEE-----ECSBCCSSHHHHHHHHHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceE-----ecCCCCccHhhHHHHHHHHHHHHhccCCccceeccccccCHHHHHHHHHh
Confidence 6888999999999999887652 22 22100 0001224556666654 46899998889999999999987
Q ss_pred hCCcEEEE
Q 026945 102 TGCEGVLS 109 (230)
Q Consensus 102 ~gadgVmi 109 (230)
..||.|.+
T Consensus 163 ~a~d~v~i 170 (253)
T d1kcza1 163 KAGHMVQI 170 (253)
T ss_dssp TCSSEEEE
T ss_pred CCcCeeec
Confidence 77898877
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=94.24 E-value=0.075 Score=42.97 Aligned_cols=86 Identities=19% Similarity=0.311 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHH---hhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLE---ETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~---~~gad 105 (230)
|.+...+.++.+.+.|++.|.+-|-|.+... .+..=....++.+.+.. ++||++..+-.|.+++.+..+ +.|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~-Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad 98 (295)
T d1o5ka_ 20 DLESYERLVRYQLENGVNALIVLGTTGESPT-VNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN 98 (295)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGG-CCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhh-CCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCC
Confidence 5667888999999999999999887765421 11111123344444443 589998777667777665443 47999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
+||+.-..+..|
T Consensus 99 ~v~v~pP~y~~~ 110 (295)
T d1o5ka_ 99 GVLVVTPYYNKP 110 (295)
T ss_dssp EEEEECCCSSCC
T ss_pred EEEEeCCCCCCC
Confidence 999987665554
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.99 E-value=0.044 Score=41.60 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=59.1
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVL 84 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi 84 (230)
.+.++.+++.. ..+|.|-++ + .+-+..+.++|+|.|-+-.-+.++. -+.+..++... .+.+.
T Consensus 65 ~~~~~~~~~~~~~~~~I~VEv~---~----~~e~~~a~~~g~d~i~LDn~~pe~~--------k~~~~~lk~~~~~i~lE 129 (170)
T d1o4ua1 65 ERAVQEVRKIIPFTTKIEVEVE---N----LEDALRAVEAGADIVMLDNLSPEEV--------KDISRRIKDINPNVIVE 129 (170)
T ss_dssp HHHHHHHHTTSCTTSCEEEEES---S----HHHHHHHHHTTCSEEEEESCCHHHH--------HHHHHHHHHHCTTSEEE
T ss_pred HHHHHHHHhhCCCCceEEEEeC---c----HHHHHHHHhcCccEEEEcCcChhhH--------hHHHHHHHhhCCcEEEE
Confidence 45666666544 356666665 2 3345566789999998765433211 13334444433 47788
Q ss_pred EcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 85 ANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 85 ~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
++||| +++.+.++- .+|+|.+.+|.-...-|+
T Consensus 130 aSGGI-~~~ni~~~a-~~GVD~Is~g~lt~~a~~ 161 (170)
T d1o4ua1 130 VSGGI-TEENVSLYD-FETVDVISSSRLTLQEVF 161 (170)
T ss_dssp EEECC-CTTTGGGGC-CTTCCEEEEGGGTSSCCC
T ss_pred EECCC-CHHHHHHHH-HcCCCEEEcCccccCCCC
Confidence 99999 577887665 599999999864444444
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=93.91 E-value=0.3 Score=36.63 Aligned_cols=90 Identities=21% Similarity=0.259 Sum_probs=57.1
Q ss_pred HHHHHHhhc-CCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEE
Q 026945 9 SLVEKLALN-LNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLA 85 (230)
Q Consensus 9 eiv~~v~~~-~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~ 85 (230)
+.++.++.. -..+|.|-++ +. +-++.+.++|+|.|-+-.-+. +.+++..+.+ ++.+.+
T Consensus 68 ~~~~~~~~~~~~~~IeVEv~---~~----~~~~~a~~~g~diImLDN~~p------------e~~~~av~~i~~~~~lEa 128 (167)
T d1qapa1 68 QAVEKAFWLHPDVPVEVEVE---NL----DELDDALKAGADIIMLDNFNT------------DQMREAVKRVNGQARLEV 128 (167)
T ss_dssp HHHHHHHHHSTTSCEEEEES---SH----HHHHHHHHTTCSEEEESSCCH------------HHHHHHHHTTCTTCCEEE
T ss_pred hhhHHHhhcCCCceEEEecC---cH----HHHHHHHhcCCcEEEecCCCH------------HHHHHHHHhcCCceEEEE
Confidence 444444432 2456666554 22 334555678999998754332 3344443433 478889
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
+||| +++.+.++-+ +|+|.+.+|.-...-|++
T Consensus 129 SGgI-~~~ni~~ya~-~GVD~IS~galt~~a~~~ 160 (167)
T d1qapa1 129 SGNV-TAETLREFAE-TGVDFISVGALTKHVRAL 160 (167)
T ss_dssp CCCS-CHHHHHHHHH-TTCSEEECSHHHHEEECC
T ss_pred eCCC-CHHHHHHHHH-cCCCEEECCcccCCCCcc
Confidence 9999 6899988775 999999998755554543
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.33 Score=37.85 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++ .+.+|..-+.+.+-.......++.+.+.|++++|||+-
T Consensus 45 ~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~ 90 (231)
T d1eixa_ 45 QFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHAS 90 (231)
T ss_dssp HHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGG
T ss_pred HHHHHHHh-cCchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEecc
Confidence 56777765 46777665554332223345667788899999999974
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=93.84 E-value=0.16 Score=42.75 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~~gadgVmigR 111 (230)
+..+.++.+.++|++.|.+..-... . ..-.+.++.+++.. ++||++ |+|-|++.++.+++ .|+|+|-+|=
T Consensus 110 ~~~~~~~~L~~ag~d~i~IDvAhG~-----~-~~v~~~i~~ir~~~~~~~~IiA-GNVaT~e~~~~L~~-aGaD~vkVGI 181 (362)
T d1pvna1 110 DFRERVPALVEAGADVLCIDSSDGF-----S-EWQKITIGWIREKYGDKVKVGA-GNIVDGEGFRYLAD-AGADFIKIGI 181 (362)
T ss_dssp SHHHHHHHHHHHTCSEEEECCSCCC-----B-HHHHHHHHHHHHHHGGGSCEEE-EEECSHHHHHHHHH-HTCSEEEECS
T ss_pred hhHHHHHHHhhcCceEEeechhccc-----h-hHHHHHHHHHHHhhccceeeec-ccccCHHHHHHHHH-hCCcEEEecc
Confidence 3556788899999999998654322 1 11246677775543 477765 89999999999885 8999999885
Q ss_pred h
Q 026945 112 S 112 (230)
Q Consensus 112 ~ 112 (230)
|
T Consensus 182 G 182 (362)
T d1pvna1 182 G 182 (362)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=93.81 E-value=0.29 Score=39.44 Aligned_cols=104 Identities=16% Similarity=0.174 Sum_probs=68.3
Q ss_pred HHHHHHHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccH
Q 026945 6 LVKSLVEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADW 69 (230)
Q Consensus 6 ~~~eiv~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~ 69 (230)
.+.++++.+++.-...+..=+-.| ++.+.+.++++.+.++|||.|.+---..+.. ++....--+
T Consensus 3 ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~ 82 (267)
T d1qopa_ 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCF 82 (267)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhh
Confidence 456777777765444444445455 5788899999999999999999963222110 121111235
Q ss_pred HHHHHHHhhC-CccEEEcCCCC-----CHHHHHHHHHhhCCcEEEE
Q 026945 70 NAIKAVKNAL-RIPVLANGNVR-----HMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 70 ~~i~~i~~~~-~ipvi~nGgI~-----s~~da~~~l~~~gadgVmi 109 (230)
+.++++++.. .+|++.-|-.+ -.+...+..++.|+||+.+
T Consensus 83 ~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~Glii 128 (267)
T d1qopa_ 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLV 128 (267)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceec
Confidence 6677777764 79998877443 2355566666799999999
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.12 Score=41.84 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHHHh---hCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCLEE---TGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l~~---~gad 105 (230)
|.+...+.++.+.+.|++.|.+-|-|.+... .+..=..+.++.+.+.+ .+||++..+-.|.+++.+..+. .|+|
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~-Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad 98 (292)
T d2a6na1 20 CRASLKKLIDYHVASGTSAIVSVGTTGESAT-LNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGG-SCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeeccchhh-CCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence 5567788999999999999999987765421 11110123344444443 4899988888888888776653 6999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+.-..+..|
T Consensus 99 ~~~~~pP~~~~~ 110 (292)
T d2a6na1 99 GCLTVTPYYNRP 110 (292)
T ss_dssp EEEEECCCSSCC
T ss_pred ceeccCCCCCCC
Confidence 999987665544
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=93.69 E-value=0.32 Score=38.99 Aligned_cols=96 Identities=16% Similarity=0.190 Sum_probs=63.2
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.++++.+.+.+ ++||.+-+-. .+..+++++++.++++|++.+-+..-.... .+...-+++.++|.+++++||+.
T Consensus 59 ~~l~~~~~~~~~~~~~vi~gv~~-~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~---~s~~~i~~~~~~v~~~~~~pi~i 134 (292)
T d1xkya1 59 VALYRHVVSVVDKRVPVIAGTGS-NNTHASIDLTKKATEVGVDAVMLVAPYYNK---PSQEGMYQHFKAIAESTPLPVML 134 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHHHHHHHTTCSEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCEEE
T ss_pred HHHHHHHHHHhCCCceEEEecCc-ccHHHHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHhccCCCcEEE
Confidence 34455554433 5788776543 456789999999999999999998653221 11122367788888899999874
Q ss_pred -c-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 86 -N-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 86 -n-----GgI~s~~da~~~l~~~gadgV 107 (230)
| |.--+++.+.++.+..++-|+
T Consensus 135 Yn~P~~~~~~~~~~~~~~l~~~p~v~gi 162 (292)
T d1xkya1 135 YNVPGRSIVQISVDTVVRLSEIENIVAI 162 (292)
T ss_dssp EECHHHHSSCCCHHHHHHHHTSTTEEEE
T ss_pred EeCCcccCCccCHHHHhhhccCCCEEEE
Confidence 2 555678777776554444443
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.48 E-value=0.064 Score=45.51 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
.+-+..+.++|++.|.|..-... . ..-.+.++++++..++|||+ |+|-|++-+.. ..|||+|-+|
T Consensus 118 ~~r~~~l~~aGvd~ivID~A~Gh-----~-~~~i~~lK~ir~~~~~~vIa-GNVaT~e~~~~---l~gaD~VkVG 182 (368)
T d2cu0a1 118 IKRAIELDKAGVDVIVVDTAHAH-----N-LKAIKSMKEMRQKVDADFIV-GNIANPKAVDD---LTFADAVKVG 182 (368)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCC-----C-HHHHHHHHHHHHTCCSEEEE-EEECCHHHHTT---CTTSSEEEEC
T ss_pred HHHHHHHHHcCCCEEEecCcccc-----h-hhhhhhhhhhhhhcccceee-ccccCHHHHHh---hhcCcceeec
Confidence 34566788999999998764322 1 12346788888889999987 99999988754 4689998776
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=93.16 E-value=0.22 Score=39.79 Aligned_cols=71 Identities=18% Similarity=0.373 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE-----cCC-CCCHHHHHHHH------HhhC
Q 026945 36 IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA-----NGN-VRHMEDVQKCL------EETG 103 (230)
Q Consensus 36 ~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~-----nGg-I~s~~da~~~l------~~~g 103 (230)
.+=+..+++.|++.|.+-..-.. .|. .+....++.+++.+++||.+ .|| +.|.+++..+. ++.|
T Consensus 10 ~~~a~~A~~~GAdRIELc~~l~~--GGl--TPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G 85 (247)
T d1twda_ 10 MECALTAQQNGADRVELCAAPKE--GGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELG 85 (247)
T ss_dssp HHHHHHHHHTTCSEEEECBCGGG--TCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEcCCccc--CCC--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcC
Confidence 45577889999999999654332 244 34678899999999999864 255 57888876544 4589
Q ss_pred CcEEEEe
Q 026945 104 CEGVLSA 110 (230)
Q Consensus 104 adgVmig 110 (230)
+|||++|
T Consensus 86 ~dGvV~G 92 (247)
T d1twda_ 86 FPGLVTG 92 (247)
T ss_dssp CSEEEEC
T ss_pred CCeEEEE
Confidence 9999997
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.03 E-value=0.44 Score=39.46 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=62.3
Q ss_pred ceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC-------C---------------CC---cC---------C-CC
Q 026945 20 VPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT-------R---------------DE---KD---------G-KK 64 (230)
Q Consensus 20 ~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt-------~---------------~~---~~---------~-~~ 64 (230)
.+....+-...+...+.+++++.+++|+..+.+..=. + .. .. . ..
T Consensus 122 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (349)
T d1tb3a1 122 GFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSFPK 201 (349)
T ss_dssp CCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-------------
T ss_pred CCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccccC
Confidence 3444444444455667889999999999888664210 0 00 00 0 01
Q ss_pred CcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 65 FRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 65 ~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
....|+.+..+++..+.|++. .||.+.+|+..+.+ .|+|++.++
T Consensus 202 ~~~~~~~i~~l~~~~~~pii~-Kgi~~~~da~~a~~-~G~d~i~vs 245 (349)
T d1tb3a1 202 ASFCWNDLSLLQSITRLPIIL-KGILTKEDAELAMK-HNVQGIVVS 245 (349)
T ss_dssp CCCCHHHHHHHHTTCCSCEEE-EEECSHHHHHHHHH-TTCSEEEEC
T ss_pred CCCCHHHHHHHHHhcCCCccc-chhhhhHHHHHHHH-hhccceeee
Confidence 235799999999999999988 56789999999986 899999985
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=92.62 E-value=0.43 Score=39.18 Aligned_cols=106 Identities=19% Similarity=0.251 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhhcCCceEEEEEC-CC-C-C----------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCC--Cccc
Q 026945 4 LPLVKSLVEKLALNLNVPVSCKIR-VF-P-N----------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKK--FRAD 68 (230)
Q Consensus 4 p~~~~eiv~~v~~~~~~pvsvKiR-~g-~-~----------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~--~~~~ 68 (230)
.+...++++.... .+++|-+=+- ++ . + ..+..+..+-+++.|+|+|.+.-.|.-..+... +..+
T Consensus 112 i~~Tk~vv~~Ah~-~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~Yk~~~~~~l~ 190 (305)
T d1rvga_ 112 VRETRRVVEAAHA-VGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYKGKGRPFID 190 (305)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBCSSSSCCCC
T ss_pred HHHHHHHHHHhch-hceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcccCCCCcccch
Confidence 3455566665544 4677776653 32 1 0 012333333456789999998766654432212 2378
Q ss_pred HHHHHHHHhhCCccEEEcCCCC----------------------CHHHHHHHHHhhCCcEEEEeh
Q 026945 69 WNAIKAVKNALRIPVLANGNVR----------------------HMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 69 ~~~i~~i~~~~~ipvi~nGgI~----------------------s~~da~~~l~~~gadgVmigR 111 (230)
++.+++|.+.+++|++..|+=. +.+++.++.+ .|+.-|=|++
T Consensus 191 ~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~-~GV~KiNi~T 254 (305)
T d1rvga_ 191 HARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAIS-LGIAKINTDT 254 (305)
T ss_dssp HHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHH-TTEEEEEECH
T ss_pred HHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHH-cCeEEEEeCh
Confidence 9999999999999999988642 3566666665 5666665555
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=92.54 E-value=0.45 Score=38.03 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=64.6
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.++++.+.+.. ++||.+-+-- .+..+++++++.++++|+|.+.+.+..... .+...-+++.+.|.+++++|++.
T Consensus 57 ~~~~~~~~~~~~~~~~vi~gv~~-~st~~ai~~a~~A~~~Gad~v~v~pP~y~~---~s~~~i~~~~~~ia~a~~~pi~i 132 (295)
T d1o5ka_ 57 EKLVSRTLEIVDGKIPVIVGAGT-NSTEKTLKLVKQAEKLGANGVLVVTPYYNK---PTQEGLYQHYKYISERTDLGIVV 132 (295)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCC-SCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHhhhhccccccCCceEeeccc-ccHHHHHHHHHHHHHcCCCEEEEeCCCCCC---CCHHHHHHHHHHHHhccCCCeeE
Confidence 34555554443 5788776643 356789999999999999999998754321 11122356778888889999874
Q ss_pred ------cCCCCCHHHHHHHHHh-hCCcEE
Q 026945 86 ------NGNVRHMEDVQKCLEE-TGCEGV 107 (230)
Q Consensus 86 ------nGgI~s~~da~~~l~~-~gadgV 107 (230)
+|---+++.+.+.+++ ..+-++
T Consensus 133 Yn~P~~~g~~~~~~~~~~l~~~~~ni~~i 161 (295)
T d1o5ka_ 133 YNVPGRTGVNVLPETAARIAADLKNVVGI 161 (295)
T ss_dssp EECHHHHSCCCCHHHHHHHHHHCTTEEEE
T ss_pred EeccchhcccchhHHHHHHHhhcccccce
Confidence 2556688888887764 334444
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=92.31 E-value=0.32 Score=38.97 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=44.5
Q ss_pred HHHHHHH-HHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh------------CCccEEEcCCCCCHHHHHHHH
Q 026945 33 QDTIKYA-KMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA------------LRIPVLANGNVRHMEDVQKCL 99 (230)
Q Consensus 33 ~~~~~~a-~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~------------~~ipvi~nGgI~s~~da~~~l 99 (230)
++....+ ....++|+|+|-=+.... .+++..+.+..+++. -.+.|=++|||+|++++.+++
T Consensus 150 ~e~i~~~~~~~~~aGadFVKTSTG~~------~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~~~i 223 (256)
T d2a4aa1 150 EDLIIKTTLAVLNGNADFIKTSTGKV------QINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTASHYI 223 (256)
T ss_dssp HHHHHHHHHHHHTTTCSEEECCCSCS------SCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHhccCCC------CCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHHHHH
Confidence 4444444 445689999996322211 123444443333221 257888999999999999999
Q ss_pred HhhCCcEEEEehhhhhCCcccc
Q 026945 100 EETGCEGVLSAESLLENPALFA 121 (230)
Q Consensus 100 ~~~gadgVmigR~~l~nP~lf~ 121 (230)
. .|++.+ |-..+ +|..|+
T Consensus 224 ~-~g~~~l--G~~~~-~~~~fR 241 (256)
T d2a4aa1 224 L-LARRFL--SSLAC-HPDNFR 241 (256)
T ss_dssp H-HHHHHT--C-------CCEE
T ss_pred H-HHHHhc--ccccc-cCCcee
Confidence 7 677743 22222 566555
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=92.19 E-value=0.051 Score=43.69 Aligned_cols=41 Identities=20% Similarity=0.435 Sum_probs=35.7
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.+...++||+.||++.+. |. |.++
T Consensus 204 ~~~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASl~-~e-F~~I 244 (249)
T d1kv5a_ 204 ELRILYGGSV-NGKNARTLYQQRDVNGFLVGGASLK-PE-FVDI 244 (249)
T ss_dssp HCCEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TT-HHHH
T ss_pred CCcEEEcCCC-CHhHHHHHhcCCCCCEEEechHhcC-HH-HHHH
Confidence 4899999999 5788999998889999999999995 88 7654
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.96 E-value=0.63 Score=35.41 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred HHHHHHhhcCCceEEEEECCCC-----ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE
Q 026945 9 SLVEKLALNLNVPVSCKIRVFP-----NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV 83 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~-----~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv 83 (230)
+.++.+++.++.|+........ ......+....+..+|++.+.++....... ....-|+.++.++.....++
T Consensus 56 ~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 132 (230)
T d1yxya1 56 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRH---DGLDIASFIRQVKEKYPNQL 132 (230)
T ss_dssp HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCT---TCCCHHHHHHHHHHHCTTCE
T ss_pred hhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEeccccccc---chhhHHHHHHHHHhcCCCce
Confidence 3455667777888766554321 112334667778889999998887544321 11334788888888766655
Q ss_pred EEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 84 LANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 84 i~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+. +++.|.+++..+.+ .|+|.+.+
T Consensus 133 v~-~~v~t~~~a~~a~~-~Gad~i~~ 156 (230)
T d1yxya1 133 LM-ADISTFDEGLVAHQ-AGIDFVGT 156 (230)
T ss_dssp EE-EECSSHHHHHHHHH-TTCSEEEC
T ss_pred Ee-cCCCCHHHHHHHHh-cCCCEEEe
Confidence 54 47999999998886 89999876
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=91.93 E-value=0.058 Score=43.23 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=34.8
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.++..++||+.||++.|. +. |.++
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~~~idG~LVG~ASL~-~~-F~~I 241 (246)
T d1o5xa_ 201 QIRILYGGSV-NTENCSSLIQQEDIDGFLVGNASLK-ES-FVDI 241 (246)
T ss_dssp HSEEEECSCC-CTTTHHHHHTSTTCCEEEECGGGGS-TT-HHHH
T ss_pred cccEEEeCCC-CHhHHHHHhcCCCCCEEEeecccCC-HH-HHHH
Confidence 4899999999 5788999998899999999999995 65 5543
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.76 E-value=0.84 Score=34.86 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecCC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGRT 56 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~rt 56 (230)
+.++++++..+.||..-+.+. |..++ ...++.+.++|+|++|||+-.
T Consensus 44 ~~v~~l~~~~~~~i~~D~K~~-DIg~t~~~~~~~~~~~gad~~TVh~~~ 91 (212)
T d1km4a_ 44 DIIAEFRKRFGCRIIADFAVA-DIPETNEKICRATFKAGADAIIVHGFP 91 (212)
T ss_dssp HHHHHHHHHHCCEEEEEEEEC-SCHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred HHHHHHHHhcccceehhhhhh-ccccHHHHhHhhhccccccEEEEeccC
Confidence 456667666677776555443 33443 467788889999999999853
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.27 Score=39.54 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~gad 105 (230)
|.+...+.++.+.+.|++.|.+-|-|.+... .+..=..+.++.+++.+ ++|+++.-+-.|.+++.+.. ++.|+|
T Consensus 21 D~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~-Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad 99 (295)
T d1hl2a_ 21 DKASLRRLVQFNIQQGIDGLYVGGSTGEAFV-QSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 99 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEESSGGGTGGG-SCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeEccchhh-CCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCc
Confidence 5567888999999999999999887665321 11111123344444444 58988755555666665444 348999
Q ss_pred EEEEehhhhhCC
Q 026945 106 GVLSAESLLENP 117 (230)
Q Consensus 106 gVmigR~~l~nP 117 (230)
++|+.-..+..+
T Consensus 100 ~~~v~~p~~~~~ 111 (295)
T d1hl2a_ 100 AVSAVTPFYYPF 111 (295)
T ss_dssp EEEEECCCSSCC
T ss_pred eeeeeeccccCC
Confidence 999987665544
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=91.56 E-value=0.23 Score=35.89 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh--CCccEEEcCCCCC----HHHHHHHHHhhCCcEE
Q 026945 35 TIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA--LRIPVLANGNVRH----MEDVQKCLEETGCEGV 107 (230)
Q Consensus 35 ~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~--~~ipvi~nGgI~s----~~da~~~l~~~gadgV 107 (230)
..++++.+.+.+++.|.++....... +.-.+.+..+++. -++||++.|.+-+ +.+....++..|+|+|
T Consensus 43 ~e~iv~a~~~~~~d~v~lS~~~~~~~-----~~~~~~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~i 116 (137)
T d1ccwa_ 43 QELFIKAAIETKADAILVSSLYGQGE-----IDCKGLRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRV 116 (137)
T ss_dssp HHHHHHHHHHHTCSEEEEEECSSTHH-----HHHTTHHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHhcCCCEEEEeeccccch-----HHHHHHHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEE
Confidence 45788999999999999988644321 1222445566554 3699999887754 7777777877899987
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.43 E-value=0.94 Score=36.21 Aligned_cols=97 Identities=16% Similarity=0.115 Sum_probs=63.1
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.++++.+.+.+ .+||.+-+- +.+.++++++++..++.|++++.+..-.... .+...-.++.++|.+.+++||+.
T Consensus 63 ~~l~~~~~~~~~~~~~vi~g~~-~~s~~~~i~~a~~a~~~Gad~v~i~~P~~~~---~~~~~l~~~~~~v~~~~~~pi~l 138 (296)
T d1xxxa1 63 IELLRAVLEAVGDRARVIAGAG-TYDTAHSIRLAKACAAEGAHGLLVVTPYYSK---PPQRGLQAHFTAVADATELPMLL 138 (296)
T ss_dssp HHHHHHHHHHHTTTSEEEEECC-CSCHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHHhccccceEeccc-cchhHHHHHHHHHHHHhcCCeEEEEeccCCC---CCHHHHHHHHHHHHHhcCCCEEE
Confidence 34455544433 478876553 2456889999999999999999988754321 11122357788888889999875
Q ss_pred -----c-CCCCCHHHHHHHHHhhCCcEEE
Q 026945 86 -----N-GNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 86 -----n-GgI~s~~da~~~l~~~gadgVm 108 (230)
. |-..+++.+.++.+...+-|+=
T Consensus 139 Yn~p~~~g~~~~~~~~~~L~~~p~i~giK 167 (296)
T d1xxxa1 139 YDIPGRSAVPIEPDTIRALASHPNIVGVK 167 (296)
T ss_dssp EECHHHHSSCCCHHHHHHHHTSTTEEEEE
T ss_pred EECccccCCCCCHHHHHHhcCCCCeeeec
Confidence 2 3345777777766544444443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=91.31 E-value=0.25 Score=38.46 Aligned_cols=62 Identities=11% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 43 EDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 43 ~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
.+.|++.+-+.+-.. .+ -..+++.++.-+ ++|++..||| +.+++.+.|+ .|+.++.+|..+.
T Consensus 124 ~~~G~~~vK~FPA~~------~g--G~~~lkal~~p~p~~~~~ptGGV-~~~N~~~yl~-~g~v~~~~Gs~l~ 186 (212)
T d1vhca_ 124 LEMGISAVKFFPAEA------SG--GVKMIKALLGPYAQLQIMPTGGI-GLHNIRDYLA-IPNIVACGGSWFV 186 (212)
T ss_dssp HHTTCCEEEETTTTT------TT--HHHHHHHHHTTTTTCEEEEBSSC-CTTTHHHHHT-STTBCCEEECGGG
T ss_pred HHCCCCEEEEccccc------cc--hHHHHHHHhccccCCeEEecCCC-CHHHHHHHHh-CCCEEEEEChhhC
Confidence 456666666654211 11 236788887755 5999999999 5789999997 7888888887554
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=91.25 E-value=0.4 Score=38.52 Aligned_cols=83 Identities=27% Similarity=0.332 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCceEEEEECCCC--------------ChH---HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFP--------------NLQ---DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~--------------~~~---~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
.++|+.+.+. ++||..-+-+.| +.+ ...+.++.++++|+..|.+-+- .-+
T Consensus 118 ~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~v------------p~~ 184 (262)
T d1m3ua_ 118 VETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDALALEAAGAQLLVLECV------------PVE 184 (262)
T ss_dssp HHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHHHHHHHHTCCEEEEESC------------CHH
T ss_pred HHHHHHHHHc-CCeEEeehhhchhhhhhcCCccccCccHHHHHHHHHHHHHHHhhcceEEEEecc------------cHH
Confidence 4678888765 899998777643 222 4677889999999999998552 237
Q ss_pred HHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEE-EEehhhhh
Q 026945 71 AIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV-LSAESLLE 115 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgV-migR~~l~ 115 (230)
..++|.+.++||+|+-|. -.+|||- ++.-=+|+
T Consensus 185 va~~It~~~~IPtIGIGA------------G~~cDGQvlv~~DilG 218 (262)
T d1m3ua_ 185 LAKRITEALAIPVIGIGA------------GNVTDGQILVMHDAFG 218 (262)
T ss_dssp HHHHHHHHCSSCEEEESS------------CTTSSEEEECHHHHTT
T ss_pred HHHHHHhhhcceeEeecc------------cCCCcceEEehhHhhC
Confidence 788999999999997663 2467874 44444444
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=91.15 E-value=0.42 Score=37.90 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+..+.+++|+.+.++||+.||||.|.-. + ....+-+..+++.+++|+=.-|...+ ++.+......-+-|.+
T Consensus 22 ~~Pd~~~~a~~~~~~GadgITvH~R~Dr-R-----HI~~~Dv~~l~~~~~~~lNlE~a~~~--e~i~ia~~~kP~qvtL 92 (242)
T d1m5wa_ 22 AYPDPVQAAFIAEQAGADGITVHLREDR-R-----HITDRDVRILRQTLDTRMNLEMAVTE--EMLAIAVETKPHFCCL 92 (242)
T ss_dssp CCSCHHHHHHHHHTTTCSEEEEECCTTC-S-----SSCHHHHHHHHHHCSSEEEEEECSSH--HHHHHHHHHCCSEEEE
T ss_pred CCCCHHHHHHHHHHcCCCeEEeCCCCCc-c-----ccchHHHHHHHHHhhcccccccccch--hHHHHHHHhccceEEE
Confidence 3456889999999999999999999532 2 34456677888888888877776632 3444443455555544
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=91.02 E-value=0.17 Score=39.00 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=40.2
Q ss_pred cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 66 RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 66 ~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
..||+.+..++.. ..|++..||+ +++.+.++++..++.||=+..|+-..|-
T Consensus 138 ~~dw~~~~~~~~~-~~~~~LAGGl-~~~Nv~~ai~~~~p~gvDvsSgvE~~~G 188 (205)
T d1nsja_ 138 TFDWSLILPYRDR-FRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG 188 (205)
T ss_dssp CCCGGGTGGGGGG-SSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred ccchhhcccchhc-ccceeeecCC-CHHHHHHHHHHhCCCEEEEcCcccCCCC
Confidence 3589888777553 3589999999 6889999998889999988888765554
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.83 E-value=0.069 Score=42.86 Aligned_cols=82 Identities=17% Similarity=0.268 Sum_probs=55.0
Q ss_pred CCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------cCCCCCcccHHHHHHHHhhCCccEEEcCCCC
Q 026945 27 RVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------KDGKKFRADWNAIKAVKNALRIPVLANGNVR 90 (230)
Q Consensus 27 R~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~ 90 (230)
-.| ++.+.+.++++.+. .|+|.|.+-=-..+- .++....--++.++++++..++|++.=|=.+
T Consensus 12 taG~P~~~~s~~~l~~l~-~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N 90 (248)
T d1geqa_ 12 TAGDPDKQSTLNFLLALD-EYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYN 90 (248)
T ss_dssp ETTSSCHHHHHHHHHHHG-GGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHH
T ss_pred cCcCCCHHHHHHHHHHHH-cCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccc
Confidence 344 57788999999985 599999984322111 0122112236677888888889998777544
Q ss_pred C-----HHHHHHHHHhhCCcEEEE
Q 026945 91 H-----MEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 91 s-----~~da~~~l~~~gadgVmi 109 (230)
. .+...+-..+.|+||+.+
T Consensus 91 ~i~~~G~~~f~~~~~~~Gv~Glii 114 (248)
T d1geqa_ 91 PIYRAGVRNFLAEAKASGVDGILV 114 (248)
T ss_dssp HHHHHCHHHHHHHHHHHTCCEEEE
T ss_pred cccccCHHHHhhhhcccCeeEEec
Confidence 3 455555666799999999
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=90.80 E-value=1.4 Score=34.98 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHhhcCCceEEEEEC-CCCC------hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc
Q 026945 10 LVEKLALNLNVPVSCKIR-VFPN------LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP 82 (230)
Q Consensus 10 iv~~v~~~~~~pvsvKiR-~g~~------~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip 82 (230)
++++++..-.+.|.+-+. ..|+ ..+..++++.++ .|+++|.|..-... +.| +++.+..+++.+++|
T Consensus 31 f~~al~~~~~~~iIAEiKr~SPS~G~i~~~~d~~~~a~~ye-~GA~aiSVLTd~~~----F~G--s~~~l~~vr~~~~~P 103 (251)
T d1i4na_ 31 FLEVLSGKERVKIIAEFKKASPSAGDINADASLEDFIRMYD-ELADAISILTEKHY----FKG--DPAFVRAARNLTCRP 103 (251)
T ss_dssp HHHHHCCSSSCEEEEEECSBCSSSCBSCTTCCHHHHHHHHH-HHCSEEEEECCCSS----SCC--CTHHHHHHHTTCCSC
T ss_pred HHHHHhcCCCCeEEEeeecCCCCCCCCcCCccHHHHHHHHh-cCCcceEEecccCC----CCC--CHHHHHHHhhcccCc
Confidence 455665444566665442 2221 235778998885 69999998763221 323 468899999999999
Q ss_pred EEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhh
Q 026945 83 VLANGNVRHMEDVQKCLEETGCEGVLSAESLLE 115 (230)
Q Consensus 83 vi~nGgI~s~~da~~~l~~~gadgVmigR~~l~ 115 (230)
|+.-==|-++-++.+... .|||+|.+=-+++.
T Consensus 104 iLrKDFIid~~QI~ea~~-~GADaiLLI~~~L~ 135 (251)
T d1i4na_ 104 ILAKDFYIDTVQVKLASS-VGADAILIIARILT 135 (251)
T ss_dssp EEEECCCCSTHHHHHHHH-TTCSEEEEEGGGSC
T ss_pred hhhhhhhhCHHHHHHHHh-hccceEEeeccccc
Confidence 999888899999998886 89999977555554
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=90.78 E-value=0.05 Score=43.72 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=35.7
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.+...++||+.||++.+. |. |.++
T Consensus 204 ~i~ilYGGSV-~~~N~~~i~~~~~vdG~LVG~ASl~-~~-F~~I 244 (249)
T d1n55a_ 204 KLRILYGGSV-NAANAATLYAKPDINGFLVGGASLK-PE-FRDI 244 (249)
T ss_dssp HCEEEEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TT-HHHH
T ss_pred cccEEEcCCC-CHhHHHHHhcCCCCCeEEeehhhcC-HH-HHHH
Confidence 4899999999 5788999998899999999999995 87 7654
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=90.78 E-value=0.042 Score=44.43 Aligned_cols=42 Identities=17% Similarity=0.329 Sum_probs=35.6
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccchh
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGFR 124 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~~ 124 (230)
++||+..|.| +++.+.+.++..++||+.||++.| ||. |.++-
T Consensus 210 ~~~iLYGGSV-~~~N~~~i~~~~~vDG~LVGgASL-~~~-F~~Ii 251 (257)
T d1mo0a_ 210 ATRIIYGGSV-TADNAAELGKKPDIDGFLVGGASL-KPD-FVKII 251 (257)
T ss_dssp HSCEEEESSC-CTTTHHHHTTSTTCCEEEESGGGG-STH-HHHHH
T ss_pred cccEEeeCCc-CHHHHHHHhcCCCCCeEEeehHhC-ChH-HHHHH
Confidence 4899998998 578899999888999999999999 588 77653
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=90.73 E-value=0.44 Score=36.58 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHH-HHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDT-IKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANG 87 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~-~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nG 87 (230)
++++.+++. +++|..-..+. |..+| ...++.+.+.|++++++|+-.. .+.++...+..+..+++.-
T Consensus 37 ~~i~~l~~~-~~~IflDlK~~-DIpnTv~~~v~~~~~~g~d~itvH~~~G-----------~~~l~~a~~~~~~~~l~Vt 103 (198)
T d1vqta1 37 KIFDELAKR-NLKIILDLKFC-DIPSTVERSIKSWDHPAIIGFTVHSCAG-----------YESVERALSATDKHVFVVV 103 (198)
T ss_dssp HHHHHHHTT-TCEEEEEEEEC-SCHHHHHHHHHHHCCTTEEEEEEEGGGC-----------HHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHC-CCcEEEEehhc-CccHHHHHHHHHHhhccccEEEEEccCc-----------hhhhhHhhhhccccceeEE
Confidence 456666654 77887655553 44454 3566678889999999998321 2456666666554444433
Q ss_pred CCC----CHHHHH---HHHHhhCCcEEEEe
Q 026945 88 NVR----HMEDVQ---KCLEETGCEGVLSA 110 (230)
Q Consensus 88 gI~----s~~da~---~~l~~~gadgVmig 110 (230)
-.. +.++.. ..+.+.|+|+|+.|
T Consensus 104 ~LtS~~~~~~~~~~~~~~l~~~g~~~vv~~ 133 (198)
T d1vqta1 104 KLTSMEGSLEDYMDRIEKLNKLGCDFVLPG 133 (198)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHTCEEECCH
T ss_pred EeeccccchHHHHHHHHHHHHhccCccccc
Confidence 332 223322 22345799998765
|
| >d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.16 Score=39.12 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
-.+.++++++.+ ++.+.+-..-+|+.++++++++.+++.++.+|. + .. ++.+++..++++ .++||.+
T Consensus 44 d~~~i~~ir~~~~d~~l~vDaN~~~s~~~A~~~~~~l~~~~l~~iE-------e--P~-~~~d~~~~~~l~--~~~pi~~ 111 (208)
T d1jpdx1 44 ISERMVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLE-------Q--PL-PAQDDAALENFI--HPLPICA 111 (208)
T ss_dssp HHHHHHHHHHHCTTSEEEEECTTCCCSTTHHHHHHHHHHTTCCEEE-------C--CS-CTTSCGGGGSSC--CSSCEEE
T ss_pred HHHHHHHHHHhccccEEEEecccccchhHHHHHHHHHHhccccccC-------c--cC-CccCHHHHHhhh--cccceec
Confidence 345566776665 455555555567878889999999999888876 1 01 122334444443 3589999
Q ss_pred cCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 86 NGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 86 nGgI~s~~da~~~l~~~gadgVmi 109 (230)
..++.++.++..+. ..+|.+.+
T Consensus 112 ~E~~~~~~~~~~l~--~~~d~~~~ 133 (208)
T d1jpdx1 112 DESCHTRSNLKALK--GRYEMVNI 133 (208)
T ss_dssp STTCSSGGGHHHHB--TTBSEEEE
T ss_pred CCCcCCHHHHHHHh--hccCEEEe
Confidence 99999999998763 35776655
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=90.45 E-value=0.6 Score=35.03 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
|......-.+.+++..+|+|.|-+.. .--.. +++..+.|||+.|=|++.+|+.++++ +|+ +|+-.
T Consensus 101 DS~al~~~~~~i~~~~PD~IEiLPG~----------i~p~i---i~~~~~~piIAGGLI~~~edv~~al~-~g~-aVSTS 165 (172)
T d1vkfa_ 101 DSKAVERGIEQIETLGVDVVEVLPGA----------VAPKV---ARKIPGRTVIAAGLVETEEEAREILK-HVS-AISTS 165 (172)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEESGG----------GHHHH---HTTSTTSEEEEESCCCSHHHHHHHTT-TSS-EEEEC
T ss_pred ehHHHHHHHHHHhhcCCCEEEECCch----------hhHHH---HHHhcCCCEEeeCCcCCHHHHHHHHh-cCe-EEECC
Confidence 33444456677778889999875521 11122 34445689999999999999999995 554 88877
Q ss_pred hhhhhC
Q 026945 111 ESLLEN 116 (230)
Q Consensus 111 R~~l~n 116 (230)
.--++|
T Consensus 166 ~~~LW~ 171 (172)
T d1vkfa_ 166 SRILWK 171 (172)
T ss_dssp CHHHHT
T ss_pred ChHHhC
Confidence 655544
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=90.23 E-value=0.68 Score=37.01 Aligned_cols=83 Identities=24% Similarity=0.390 Sum_probs=59.0
Q ss_pred HHHHHHHhhcCCceEEEEECCCC----------------ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHH
Q 026945 8 KSLVEKLALNLNVPVSCKIRVFP----------------NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNA 71 (230)
Q Consensus 8 ~eiv~~v~~~~~~pvsvKiR~g~----------------~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~ 71 (230)
.++++++.+. ++||..-+-+.| +....++.++.++++|+..|.+-.- .-+.
T Consensus 119 ~~~i~~l~~~-gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE~V------------p~~v 185 (260)
T d1o66a_ 119 AETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMECV------------LAEL 185 (260)
T ss_dssp HHHHHHHHHT-TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEESC------------CHHH
T ss_pred hHHHHHHHHc-CCeeEeecccccchheecCcceeccccchhHHHHHHHHHHHHhhhhehhhhhc------------cHHH
Confidence 4567777664 899988776532 1234778899999999999998552 2377
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEE-EEehhhhh
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGV-LSAESLLE 115 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgV-migR~~l~ 115 (230)
.++|.+.++||+|+-|. -.+|||- ++.-=+++
T Consensus 186 a~~It~~~~iptIgIGa------------G~~cDGQvLv~~DllG 218 (260)
T d1o66a_ 186 AKKVTETVSCPTIGIGA------------GADCDGQVLVMHDMLG 218 (260)
T ss_dssp HHHHHHHCSSCEEEESS------------CSCSSEEEECHHHHTT
T ss_pred HHHHHhhhcceeeeccC------------CCCCCeeEEehHHhhC
Confidence 88999999999997663 2468874 44444444
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=90.19 E-value=0.82 Score=36.74 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=62.6
Q ss_pred HHHHhhcCCceEEEEECCC-CChHHHHHHHHHHHHcCCCEEEEecCCCCCc---------------CCCCCcccHHHHHH
Q 026945 11 VEKLALNLNVPVSCKIRVF-PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------DGKKFRADWNAIKA 74 (230)
Q Consensus 11 v~~v~~~~~~pvsvKiR~g-~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------~~~~~~~~~~~i~~ 74 (230)
.+.+++.-..-+..=+-.| ++.+.+.++++.+.+ |+|.|.+-=-..+-. ++....--++.+++
T Consensus 7 F~~~k~~~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ 85 (271)
T d1ujpa_ 7 FAKARSEGRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVRE 85 (271)
T ss_dssp HHHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHH
Confidence 5556554222233334455 577889999999876 999999853222110 12211223567788
Q ss_pred HHhhCCccEEEcCCCCC-----HHHHHHHHHhhCCcEEEE
Q 026945 75 VKNALRIPVLANGNVRH-----MEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s-----~~da~~~l~~~gadgVmi 109 (230)
+++..++|++.-|=.+. .+.+.+-..+.|+||+.+
T Consensus 86 ~r~~~~~pivlm~Y~N~i~~~G~~~F~~~~~~aGvdGlii 125 (271)
T d1ujpa_ 86 VRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVIL 125 (271)
T ss_dssp HHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEEC
T ss_pred HhcccCCcEEEEeechhhhhCCchhHhHHHhhcCceeEec
Confidence 88888999998876543 355555666799999998
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=89.94 E-value=0.33 Score=37.83 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHhhC-CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhh
Q 026945 69 WNAIKAVKNAL-RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLL 114 (230)
Q Consensus 69 ~~~i~~i~~~~-~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l 114 (230)
..+++.++.-+ +++++..|||. .+++.+.++ .|+.++.+|..+.
T Consensus 143 ~~~lkal~~p~p~~~~~ptGGV~-~~n~~~yl~-~g~v~~~~Gs~l~ 187 (213)
T d1wbha1 143 VKALQAIAGPFSQVRFCPTGGIS-PANYRDYLA-LKSVLCIGGSWLV 187 (213)
T ss_dssp HHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHT-STTBSCEEEGGGS
T ss_pred HHHHHHhcCcccCCceeeeCCCC-HHHHHHHHh-CCCEEEEEChhhC
Confidence 36788887754 59999999995 789999997 7899998887544
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=89.81 E-value=0.066 Score=42.91 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=35.8
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+++...++||+.||++.|. |. |.++
T Consensus 201 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL~-~e-F~~I 241 (246)
T d1r2ra_ 201 STRIIYGGSV-TGATCKELASQPDVDGFLVGGASLK-PE-FVDI 241 (246)
T ss_dssp HCCEEECSCC-CTTTHHHHHTSTTCCEEEESGGGGS-TH-HHHH
T ss_pred cccEEecCCC-CHHHHHHHhcCCCCCeEEeehhhCC-HH-HHHH
Confidence 4899999999 5788999998899999999999995 88 7665
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=89.63 E-value=1.7 Score=34.33 Aligned_cols=95 Identities=16% Similarity=0.131 Sum_probs=66.9
Q ss_pred HHHHHHhhcCCceEEEEECCC--C---Ch---HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC-
Q 026945 9 SLVEKLALNLNVPVSCKIRVF--P---NL---QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL- 79 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g--~---~~---~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~- 79 (230)
..++.+++.+++||.|=||.- . +. +...+-++.+.+.|++.|.+-.-+.+ +..|.+.++++.+..
T Consensus 40 g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~d------g~iD~~~~~~L~~~a~ 113 (247)
T d1twda_ 40 GVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVD------GNVDMPRMEKIMAAAG 113 (247)
T ss_dssp HHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTT------SSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCC------CCccHHHHHHHHHHhc
Confidence 345666677799999988862 1 22 34566778889999999998776553 257888888886654
Q ss_pred CccEEEcC---CCCCHHHHHHHHHhhCCcEEEE
Q 026945 80 RIPVLANG---NVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 80 ~ipvi~nG---gI~s~~da~~~l~~~gadgVmi 109 (230)
+.|+...= -+.++.++.+.|.+.|++.|.-
T Consensus 114 ~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILT 146 (247)
T d1twda_ 114 PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT 146 (247)
T ss_dssp TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE
T ss_pred ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEec
Confidence 67877653 2446777776666678888764
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.57 E-value=1.1 Score=35.44 Aligned_cols=73 Identities=16% Similarity=0.321 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++ +.+.|+++|.|-. -.. -+.| +++.+..+++.+++||+..==|-++-++.+... .|||+|.+==++
T Consensus 64 d~~~~a~-~~~~gA~aiSVLT--d~~--~F~G--s~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~-~GADaiLLI~~~ 135 (247)
T d1a53a_ 64 DPIEYSK-FMERYAVGLSILT--EEK--YFNG--SYETLRKIASSVSIPILMKDFIVKESQIDDAYN-LGADTVLLIVKI 135 (247)
T ss_dssp CHHHHHH-HHTTTCSEEEEEC--CCT--TTCC--CHHHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-HTCSEEEEEGGG
T ss_pred CHHHHHH-HHHhCCCeEEEec--Ccc--cccc--chHHHHHHHhccccceeecccccChHHHHHHHH-hhcchhhhhhhh
Confidence 4567775 5568999998853 111 1323 679999999999999999888999999999886 899999775555
Q ss_pred h
Q 026945 114 L 114 (230)
Q Consensus 114 l 114 (230)
+
T Consensus 136 L 136 (247)
T d1a53a_ 136 L 136 (247)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=89.54 E-value=1.3 Score=33.18 Aligned_cols=71 Identities=10% Similarity=0.149 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
...+..+.+.++|++.+.+....... .....++.+..+++....+++ .+++.|.+++....+ .|+|++.++
T Consensus 76 ~~~~~~~~~~~agad~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~v-~~~~~t~~~a~~~~~-~g~d~i~~~ 146 (222)
T d1y0ea_ 76 ATSKEVDELIESQCEVIALDATLQQR----PKETLDELVSYIRTHAPNVEI-MADIATVEEAKNAAR-LGFDYIGTT 146 (222)
T ss_dssp CSHHHHHHHHHHTCSEEEEECSCSCC----SSSCHHHHHHHHHHHCTTSEE-EEECSSHHHHHHHHH-TTCSEEECT
T ss_pred ccHHHHHhHHHcCCCEEEeecccccc----ccchHHHHHHHHHHhCCceEE-eecCCCHHHHHHHHH-cCCCeEEEe
Confidence 45567778888999999988754431 112345677777776554444 466889999988776 899998653
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=88.90 E-value=1.9 Score=33.36 Aligned_cols=45 Identities=27% Similarity=0.413 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCceEEEEECCCCChHHHH-HHHHHHHHcCCCEEEEecC
Q 026945 9 SLVEKLALNLNVPVSCKIRVFPNLQDTI-KYAKMLEDAGCSLLAVHGR 55 (230)
Q Consensus 9 eiv~~v~~~~~~pvsvKiR~g~~~~~~~-~~a~~l~~~G~~~i~vh~r 55 (230)
++++.+++ .+++|..-..+. |..+++ ..+..+.+.|++++|+|+-
T Consensus 45 ~~i~~l~~-~~~~IflD~K~~-DIgnTv~~~~~~~~~~~~d~vtvh~~ 90 (237)
T d1dbta_ 45 SIVKQLKE-RNCELFLDLKLH-DIPTTVNKAMKRLASLGVDLVNVHAA 90 (237)
T ss_dssp HHHHHHHH-TTCEEEEEEEEC-SCHHHHHHHHHHHHTTTCSEEEEEGG
T ss_pred HHHHHHHh-cchheehhhhhc-cCchHHHHHHHhhhccccceEEeecc
Confidence 45666665 357777655544 434433 4555667789999999963
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=88.78 E-value=2.2 Score=34.01 Aligned_cols=70 Identities=20% Similarity=0.251 Sum_probs=47.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHh--hCCccEEEcCC---CCCHHHHHHHHHhhCC
Q 026945 30 PNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKN--ALRIPVLANGN---VRHMEDVQKCLEETGC 104 (230)
Q Consensus 30 ~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~--~~~ipvi~nGg---I~s~~da~~~l~~~ga 104 (230)
...+++++=++.+.++|+|.+.+++.+.. .+.+..+.. ..++|+.+|.. -.+. .+ |.+.|+
T Consensus 164 ~gl~eai~R~~aY~eAGAD~vf~~~~~~~----------~~~~~~~~~~~~~~~pl~~~~~~~~~~~~---~e-L~~lGv 229 (275)
T d1s2wa_ 164 WGLDEALKRAEAYRNAGADAILMHSKKAD----------PSDIEAFMKAWNNQGPVVIVPTKYYKTPT---DH-FRDMGV 229 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCSSS----------SHHHHHHHHHHTTCSCEEECCSTTTTSCH---HH-HHHHTC
T ss_pred CCHHHHHHHHHHHHhcCCCeeeeccccCc----------HHHHHHHHHhhcCCCCEEEecccccccHH---HH-HHHcCC
Confidence 35788999999999999999999987432 133333333 45789988753 3333 33 445899
Q ss_pred cEEEEehhh
Q 026945 105 EGVLSAESL 113 (230)
Q Consensus 105 dgVmigR~~ 113 (230)
..|..|-.+
T Consensus 230 ~~v~~g~~~ 238 (275)
T d1s2wa_ 230 SMVIWANHN 238 (275)
T ss_dssp CEEEECSHH
T ss_pred CEEEEchHH
Confidence 999887543
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=88.66 E-value=0.61 Score=37.28 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=53.5
Q ss_pred ChHHHHHHHHHHHH-cCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhC--CccEEEcCCCCCHHHHHHHH---HhhCC
Q 026945 31 NLQDTIKYAKMLED-AGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNAL--RIPVLANGNVRHMEDVQKCL---EETGC 104 (230)
Q Consensus 31 ~~~~~~~~a~~l~~-~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~--~ipvi~nGgI~s~~da~~~l---~~~ga 104 (230)
|.+...+.++.+.+ .|++.|.+-|-|.+.. ..+..=..+.++.+.+.. ++||++.=+-.+.+++.+.. ++.|+
T Consensus 22 D~~~l~~~i~~li~~~Gv~gi~v~GttGE~~-~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~Ga 100 (293)
T d1f74a_ 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENF-MLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY 100 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGG-GSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECccCcchh-hCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHcCC
Confidence 45667788887755 5999999987665432 111111123344444443 58988655545666666443 35799
Q ss_pred cEEEEehhhhhCCc
Q 026945 105 EGVLSAESLLENPA 118 (230)
Q Consensus 105 dgVmigR~~l~nP~ 118 (230)
|+||+.-..+..|.
T Consensus 101 d~i~~~pP~~~~~s 114 (293)
T d1f74a_ 101 DCLSAVTPFYYKFS 114 (293)
T ss_dssp SEEECCCCCSSCCC
T ss_pred CEeeccCccccccc
Confidence 99999877665443
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.64 E-value=0.91 Score=36.30 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCCceEEEEECCCCC--------------h--HHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH
Q 026945 7 VKSLVEKLALNLNVPVSCKIRVFPN--------------L--QDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN 70 (230)
Q Consensus 7 ~~eiv~~v~~~~~~pvsvKiR~g~~--------------~--~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~ 70 (230)
..++|+.+.+. ++||..-+-+.|. . ...++-++.++++|+..|.+-.- ..+
T Consensus 121 ~~~~I~~L~~~-gIPV~gHiGLtPQ~~~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~V------------p~~ 187 (262)
T d1oy0a_ 121 VAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV------------PAE 187 (262)
T ss_dssp GHHHHHHHHHH-TCCEEEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC------------CHH
T ss_pred hHHHHHHHHhc-CCceEEeeeecceeeeecCccceeccchhhhHhHHHHHHHHhCCcEEEecccc------------cHh
Confidence 34677777664 7999887766431 1 23445588899999999997542 247
Q ss_pred HHHHHHhhCCccEEEcC
Q 026945 71 AIKAVKNALRIPVLANG 87 (230)
Q Consensus 71 ~i~~i~~~~~ipvi~nG 87 (230)
..++|.+.++||+|+-|
T Consensus 188 la~~It~~~~IPtIGIG 204 (262)
T d1oy0a_ 188 LATQITGKLTIPTVGIG 204 (262)
T ss_dssp HHHHHHHHCSSCEEEES
T ss_pred HHHHHHhhCCceEEEec
Confidence 78899999999999766
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=88.60 E-value=1.2 Score=35.88 Aligned_cols=70 Identities=21% Similarity=0.278 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEc---CCCCCHHHHHHHHHhhCCcEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLAN---GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~n---GgI~s~~da~~~l~~~gadgV 107 (230)
..+++++=++.+.++|+|.+.+++.+ +.+.++++++.+++|+.+| |+-...-++.+ |.+.|+..|
T Consensus 164 g~~eAi~R~~aY~eAGAD~vf~~~~~-----------~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~e-L~~~Gv~~v 231 (289)
T d1muma_ 164 GLDAAIERAQAYVEAGAEMLFPEAIT-----------ELAMYRQFADAVQVPILANITEFGATPLFTTDE-LRSAHVAMA 231 (289)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEETTCC-----------CHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHH-HHHTTCSEE
T ss_pred CHHHHHHHHHHhhhcCCcEEEecCCC-----------CHHHHHHHHHhcCCCEEEeecCcCCCccchHHH-HHHhccceE
Confidence 35678888889999999999987642 3578899999888887653 33221112333 335899988
Q ss_pred EEehh
Q 026945 108 LSAES 112 (230)
Q Consensus 108 migR~ 112 (230)
..+-.
T Consensus 232 ~~~~~ 236 (289)
T d1muma_ 232 LYPLS 236 (289)
T ss_dssp EESSH
T ss_pred EechH
Confidence 88754
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=88.54 E-value=0.99 Score=35.90 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhh
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESL 113 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~ 113 (230)
+..++++ +.+.|+++|.|..-... +.| +++.+..+++.+++||..-==|-++-++.+... .|||+|.+=-++
T Consensus 69 ~p~~~a~-~~~~gA~aiSVLTe~~~----F~G--s~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~-~GADavLLI~~~ 140 (254)
T d1piia2 69 DPARIAA-IYKHYASAISVLTDEKY----FQG--SFNFLPIVSQIAPQPILCKDFIIDPYQIYLARY-YQADACLLMLSV 140 (254)
T ss_dssp CHHHHHH-HHTTTCSEEEEECCSTT----TCC--CTTHHHHHHHHCCSCEEEESCCCSHHHHHHHHH-TTCSEEEEETTT
T ss_pred hhHHHHH-HHHhccCceEEeccccc----CCC--CHHHHHHHHhccccccchhcccCcHHHHHHHHh-hccchhhhhHhh
Confidence 4566666 66899999998753322 323 357788999999999988877899999999886 899999776555
Q ss_pred hhC
Q 026945 114 LEN 116 (230)
Q Consensus 114 l~n 116 (230)
+.+
T Consensus 141 L~~ 143 (254)
T d1piia2 141 LDD 143 (254)
T ss_dssp CCH
T ss_pred hcc
Confidence 543
|
| >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.51 E-value=0.21 Score=39.87 Aligned_cols=42 Identities=24% Similarity=0.436 Sum_probs=34.0
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+++...++||+.||++.+ +|.-|.++
T Consensus 204 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVG~ASl-~~~~F~~I 245 (251)
T d2btma_ 204 AIRIQYGGSV-KPDNIRDFLAQQQIDGALVGGASL-EPASFLQL 245 (251)
T ss_dssp TSEEEEESSC-CTTTHHHHHTSTTCCEEEESGGGS-SHHHHHHH
T ss_pred cCcEEeeCCC-CHhHHHHHhcCCCCCEEEechHhC-CHHHHHHH
Confidence 5899999999 588999999989999999998654 45555543
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=88.14 E-value=0.7 Score=35.11 Aligned_cols=107 Identities=17% Similarity=0.137 Sum_probs=66.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCc----------------------
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEK---------------------- 60 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~---------------------- 60 (230)
+|+.+.++++.+...+ .+|.|=.. .+ ..++.+.+.+.|.+.+.+||....+.
T Consensus 38 s~~~a~~i~~~~~~~~-~~V~Vf~~--~~---~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~ 111 (200)
T d1v5xa_ 38 APEAARAIGEALGPFV-VRVGVFRD--QP---PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARP 111 (200)
T ss_dssp CHHHHHHHHHHSCSSS-EEEEEESS--CC---HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCG
T ss_pred CHHHHHHHHHhhcCce-eeeeeeee--ch---hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhH
Confidence 4677777777665432 34444322 22 34566778888999999997421000
Q ss_pred ----------------CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCc
Q 026945 61 ----------------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 61 ----------------~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~ 118 (230)
.+.....+|++...+.. ...|++..||+. ++.+.++++ .++.||=+..|.-..|-
T Consensus 112 ~~~~~~~~~~L~D~~~~g~g~~~~~~~~~~~~~-~~~~~~LAGGl~-~~Nv~~~~~-~~p~gvDvsSGvE~~~G 182 (200)
T d1v5xa_ 112 EWADYPAQALLLDGKRPGSGEAYPRAWAKPLLA-TGRRVILAGGIA-PENLEEVLA-LRPYALDLASGVEEAPG 182 (200)
T ss_dssp GGGGSSCSEEEEECSSTTSCCCCCGGGGHHHHH-TTSCEEECSSCC-STTHHHHHH-HCCSEEEESGGGEEETT
T ss_pred HHhhcchhheeecccccCcccccchHHHhhhhh-ccCceEecCCCC-HHHHHHHHh-cCCCEEEEcCceECCCC
Confidence 01112346666544433 357999999995 777888886 68999988887754444
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=87.94 E-value=0.81 Score=36.49 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEE-E
Q 026945 9 SLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVL-A 85 (230)
Q Consensus 9 eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi-~ 85 (230)
++++.+.+.+ .+||.+-+-- .+..+++++++.++++|++.+.+.+-.... .+...-+++.+.|.+++++||+ .
T Consensus 58 ~~~~~~~~~~~~~~~vi~g~~~-~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~---~~~~~i~~~f~~v~~~~~~pi~iY 133 (292)
T d2a6na1 58 DVVMMTLDLADGRIPVIAGTGA-NATAEAISLTQRFNDSGIVGCLTVTPYYNR---PSQEGLYQHFKAIAEHTDLPQILY 133 (292)
T ss_dssp HHHHHHHHHHTTSSCEEEECCC-SSHHHHHHHHHTTTTSSCCEEEEECCCSSC---CCHHHHHHHHHHHHHTCSSCEEEE
T ss_pred HHhhhhhhhccccceeEeeccc-chHHHHHHHhccHHhcCCcceeccCCCCCC---CCHHHHHHHHHHHhhccCCcEEEE
Confidence 4455444433 4788876533 456889999999999999999988743221 1112236777888889999986 3
Q ss_pred c-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 86 N-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 86 n-----GgI~s~~da~~~l~~~gadgV 107 (230)
| |---+++.+.++.+..++-|+
T Consensus 134 n~P~~~g~~~~~e~~~~L~~~pnv~gi 160 (292)
T d2a6na1 134 NVPSATGCDLLPETVGRLAKVKNIIGI 160 (292)
T ss_dssp ECHHHHSCCCCHHHHHHHHTSTTEEEE
T ss_pred EeccccCCccCHHHHHHHhcCCCEEEE
Confidence 3 444678777765543333333
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=86.99 E-value=0.76 Score=38.13 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEe---cCCCCCcCCCCC--cccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCc
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVH---GRTRDEKDGKKF--RADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCE 105 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh---~rt~~~~~~~~~--~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gad 105 (230)
+.+.+.++|+.+.+.|++++.-. +||.. +.+.| .--+++++++++.+++||+. +|.+.+++..+.+ . +|
T Consensus 106 S~e~~~~~A~~lke~g~~~~r~g~fKpRtsp--~sf~g~g~~gL~~l~~~k~~~glpvvT--dV~~~~~~~~~~e-~-~D 179 (338)
T d1vr6a1 106 GREMLMETAHFLSELGVKVLRGGAYKPRTSP--YSFQGLGEKGLEYLREAADKYGMYVVT--EALGEDDLPKVAE-Y-AD 179 (338)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSCCCCCST--TSCCCCTHHHHHHHHHHHHHHTCEEEE--ECSSGGGHHHHHH-H-CS
T ss_pred CHHHHHHHHHHHHHhCccccccceecccccc--cccccchHHHHHHHHHHHhhcCceeEE--eccchhhhhhhhc-e-ee
Confidence 34668899999999999987543 34433 22332 23468889999999999997 8999999998876 3 89
Q ss_pred EEEEehhhhhCCccccchh
Q 026945 106 GVLSAESLLENPALFAGFR 124 (230)
Q Consensus 106 gVmigR~~l~nP~lf~~~~ 124 (230)
.+.||--++.|.++...+.
T Consensus 180 ilQI~A~~~~n~~LL~~~g 198 (338)
T d1vr6a1 180 IIQIGARNAQNFRLLSKAG 198 (338)
T ss_dssp EEEECGGGTTCHHHHHHHH
T ss_pred eEEechhhccCHHHHHHhh
Confidence 9999999999999987654
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=86.37 E-value=0.58 Score=35.63 Aligned_cols=104 Identities=15% Similarity=0.234 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHhhcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCC---------------------c-
Q 026945 3 NLPLVKSLVEKLALNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDE---------------------K- 60 (230)
Q Consensus 3 ~p~~~~eiv~~v~~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~---------------------~- 60 (230)
+|+.+.+|++.+. ..+|.| =...+ ..++.+.++..+++.|.+||-.... .
T Consensus 38 s~~~a~~i~~~~~---~~~V~V--fv~~~---~~~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~ 109 (198)
T d1piia1 38 NVEQAQEVMAAAP---LQYVGV--FRNHD---IADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGE 109 (198)
T ss_dssp CHHHHHHHHHHCC---CEEEEE--ESSCC---HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSS
T ss_pred CHHHHHHhhhhcc---ccccee--eeccc---hhhHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhh
Confidence 4677777776542 123333 22233 3356677778889999999852100 0
Q ss_pred -------------------CCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCcc
Q 026945 61 -------------------DGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPAL 119 (230)
Q Consensus 61 -------------------~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~l 119 (230)
.+.....||+.+. .....|++..||+ +++.+.++++ +++.||=+.+|.-.+|-.
T Consensus 110 ~~~~~~~~~~d~~lld~~~gGtG~~fdw~~~~---~~~~~~~~LAGGl-~~~Nv~~a~~-~~p~gvDvsSGvE~~pG~ 182 (198)
T d1piia1 110 TLPAREFQHVDKYVLDNGQGGSGQRFDWSLLN---GQSLGNVLLAGGL-GADNCVEAAQ-TGCAGLDFNSAVESQPGI 182 (198)
T ss_dssp SCCCCCCTTCCEEEEESCSCCSSCCCCGGGGT---TSCCTTEEEESSC-CTTTHHHHHT-TCCSEEEECGGGEEETTE
T ss_pred hhhHHHhhhhcccccCCcccccceeeehhhhc---ccccceeEEecCC-CHHHHHHHHh-cCCCEEEeCCcccCCCCC
Confidence 0111135887653 3345799999999 7999999885 899999999988777753
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=86.29 E-value=1.1 Score=35.60 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccE-EEcCCCCCHHHHHHHH---HhhCCcE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPV-LANGNVRHMEDVQKCL---EETGCEG 106 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipv-i~nGgI~s~~da~~~l---~~~gadg 106 (230)
|.+...+.++.+.+.|++.|.+-|-|.+.. ..+..=..+.++.+.+.. .|+ .+.|+. |.+++.+.. ++.|+|+
T Consensus 18 D~~~~~~~i~~l~~~Gv~gi~~~GttGE~~-~Ls~~Er~~~~~~~~~~~-~~~i~gv~~~-st~~~i~~a~~a~~~Ga~~ 94 (293)
T d1w3ia_ 18 DKEKLKIHAENLIRKGIDKLFVNGTTGLGP-SLSPEEKLENLKAVYDVT-NKIIFQVGGL-NLDDAIRLAKLSKDFDIVG 94 (293)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSTTTTGG-GSCHHHHHHHHHHHHTTC-SCEEEECCCS-CHHHHHHHHHHGGGSCCSE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECeechhhh-hCCHHHHHHHHHHHHhhc-cccccccccc-hhhhhhhhhhhhhhhcccc
Confidence 556788899999999999999988776532 111111233444444433 344 455666 455555443 3579999
Q ss_pred EEEehhh
Q 026945 107 VLSAESL 113 (230)
Q Consensus 107 VmigR~~ 113 (230)
+|+--..
T Consensus 95 ~~~~~P~ 101 (293)
T d1w3ia_ 95 IASYAPY 101 (293)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 9986554
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=85.82 E-value=1.6 Score=34.71 Aligned_cols=102 Identities=12% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHh---hcCCceEEEEECC-CCC--hHHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHH
Q 026945 4 LPLVKSLVEKLA---LNLNVPVSCKIRV-FPN--LQDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVK 76 (230)
Q Consensus 4 p~~~~eiv~~v~---~~~~~pvsvKiR~-g~~--~~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~ 76 (230)
++...++++.++ +..+.||.+-..+ |+. .+.-.+-.+...+.|+|++.++- |+ ..|...++.+.
T Consensus 57 ~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD~ialSFVrs---------~~Dv~~ir~~l 127 (258)
T d1pkla2 57 HEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVDMIFASFIRS---------AEQVGDVRKAL 127 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCSEEEETTCCS---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHhcCCCeEEEeCCCC---------HHHHHHHHHHH
Confidence 444445555544 4567777665544 332 12222334555678999999753 21 23455555554
Q ss_pred hhC--CccEEEcCCCCCHHHHH---HHHHhhCCcEEEEehhhhhCCc
Q 026945 77 NAL--RIPVLANGNVRHMEDVQ---KCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 77 ~~~--~ipvi~nGgI~s~~da~---~~l~~~gadgVmigR~~l~nP~ 118 (230)
... +++|++ -|.+.+.+. +.++ -+|||||+||=|+---
T Consensus 128 ~~~~~~~~iia--KIE~~~al~nldeI~~--~sDgImIaRGDLg~ei 170 (258)
T d1pkla2 128 GPKGRDIMIIC--KIENHQGVQNIDSIIE--ESDGIMVARGDLGVEI 170 (258)
T ss_dssp CGGGTTSEEEE--EECSHHHHHTHHHHHH--HSSEEEECHHHHTTTS
T ss_pred HHcCCCCceEE--EecCchhhhhhhhHHh--hCCeeeEechhhhhhc
Confidence 332 456665 566665554 4444 4899999999887543
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=85.02 E-value=1.1 Score=35.70 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCccEEE
Q 026945 8 KSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIPVLA 85 (230)
Q Consensus 8 ~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ipvi~ 85 (230)
.++++.+.+.+ ++||.+-+- +.+..+++++++.+++.|++.+.+.+..... .+..--.++...+.+..++|++.
T Consensus 60 ~~l~~~~~~~~~~~~~vi~gv~-~~s~~~~iela~~a~~~Gad~i~~~pP~~~~---~s~~~~~~~~~~v~~~~~~pi~i 135 (293)
T d1f74a_ 60 KEIFRIAKDEAKDQIALIAQVG-SVNLKEAVELGKYATELGYDCLSAVTPFYYK---FSFPEIKHYYDTIIAETGSNMIV 135 (293)
T ss_dssp HHHHHHHHHHHTTSSEEEEECC-CSCHHHHHHHHHHHHHHTCSEEECCCCCSSC---CCHHHHHHHHHHHHHHHCCCEEE
T ss_pred hhhhheeeccccCccccccccc-cccHHHHHHHHHHHHHcCCCEeeccCccccc---cchHHHHHHHhcccccCCceEEE
Confidence 34444444433 578877653 2466899999999999999999887654321 11111245566677777788763
Q ss_pred -c-----CCCCCHHHHHHHHHhhCCcEE
Q 026945 86 -N-----GNVRHMEDVQKCLEETGCEGV 107 (230)
Q Consensus 86 -n-----GgI~s~~da~~~l~~~gadgV 107 (230)
| |---+++.+.++.+...+-|+
T Consensus 136 Yn~P~~tg~~l~~~~l~~L~~~~~v~gi 163 (293)
T d1f74a_ 136 YSIPFLTGVNMGIEQFGELYKNPKVLGV 163 (293)
T ss_dssp ECCSSCSCHHHHHHHHHHHHTSTTEEEE
T ss_pred Eeeccceeccccchhhhhhhhccccccc
Confidence 2 211355556555543333333
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=84.86 E-value=2 Score=35.11 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCC--------------CCCcCCCCCcc------cHHHHHHHHhhCCccEEE--c-----
Q 026945 34 DTIKYAKMLEDAGCSLLAVHGRT--------------RDEKDGKKFRA------DWNAIKAVKNALRIPVLA--N----- 86 (230)
Q Consensus 34 ~~~~~a~~l~~~G~~~i~vh~rt--------------~~~~~~~~~~~------~~~~i~~i~~~~~ipvi~--n----- 86 (230)
...+-|+.+.++|.|.|.||+-. +... |.|.. -.+.++.|++.++-|++. +
T Consensus 144 ~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDe--YGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~ 221 (337)
T d1z41a1 144 EFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDE--YGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYT 221 (337)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCST--TSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCS
T ss_pred HHHHHHHHHHHcCCCeEEeeccCcceeeeecCCcccccccc--ccchhhhhhhHHHHHHHHHhhhhcccceEEecccccc
Confidence 45667778899999999999741 2222 32322 256788888888777652 2
Q ss_pred -CCCCCHHHHH---HHHHhhCCcEEEEehhhhhCCc
Q 026945 87 -GNVRHMEDVQ---KCLEETGCEGVLSAESLLENPA 118 (230)
Q Consensus 87 -GgI~s~~da~---~~l~~~gadgVmigR~~l~nP~ 118 (230)
|+ .+.++.. +.|++.|+|.+-+..|....|.
T Consensus 222 ~~g-~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~ 256 (337)
T d1z41a1 222 DKG-LDIADHIGFAKWMKEQGVDLIDCSSGALVHAD 256 (337)
T ss_dssp TTS-CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCC
T ss_pred cCc-cchhhhHHHHHHHHHcCCcccccccccccccc
Confidence 23 3555554 4566789999988877665443
|
| >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermotoga maritima [TaxId: 2336]
Probab=84.67 E-value=0.13 Score=41.22 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=35.3
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.+...++||+.||++-|. |. |.++
T Consensus 205 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL~-~~-F~~I 245 (252)
T d1b9ba_ 205 SIRILYGGSI-KPDNFLGLIVQKDIDGGLVGGASLK-ES-FIEL 245 (252)
T ss_dssp HSEEEEESSC-CHHHHTTTSSSTTCCEEEESGGGTS-TH-HHHH
T ss_pred cccEEEcCCC-CHHHHHHHhcCCCCCEEEeechhCC-HH-HHHH
Confidence 4899999999 6899999998889999999999995 76 6554
|
| >d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Entamoeba histolytica [TaxId: 5759]
Probab=84.48 E-value=0.41 Score=38.27 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=34.0
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.+...++||+.||++.| +|.-|.++
T Consensus 211 ~v~ilYGGSV-~~~N~~~i~~~~~vDG~LVGgASL-~~~~F~~I 252 (260)
T d1m6ja_ 211 ATRIQYGGSV-NPANCNELAKKADIDGFLVGGASL-DAAKFKTI 252 (260)
T ss_dssp HSCEEECSCC-CTTTHHHHHTSTTCCEEEESGGGG-SHHHHHHH
T ss_pred CCcEEEcCCC-CHhHHHHHhCCCCCCeEEechHhc-CHHHHHHH
Confidence 4899999999 578889999889999999998665 45555544
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.46 E-value=0.088 Score=42.19 Aligned_cols=41 Identities=17% Similarity=0.390 Sum_probs=35.4
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.++++..++||+.||++.|. |. |.++
T Consensus 202 ~i~iLYGGSV-~~~N~~~i~~~~~iDG~LVGgASL~-~e-F~~I 242 (247)
T d1neya_ 202 ELRILYGGSA-NGSNAVTFKDKADVDGFLVGGASLK-PE-FVDI 242 (247)
T ss_dssp HCCEEEESSC-CTTTGGGGTTCTTCCEEEESGGGGS-TH-HHHH
T ss_pred cCcEEEeCCC-CHHHHHHHhcCCCCCeEEeehHhCC-hH-HHHH
Confidence 4899999999 5788889998899999999999985 88 7665
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=84.16 E-value=3.4 Score=32.56 Aligned_cols=100 Identities=9% Similarity=0.155 Sum_probs=60.6
Q ss_pred HHHHHHHHhhcC--CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhh-CCccE
Q 026945 7 VKSLVEKLALNL--NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNA-LRIPV 83 (230)
Q Consensus 7 ~~eiv~~v~~~~--~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~-~~ipv 83 (230)
=.++++.+.+.+ ++|+.+-+- +.+..+++++++.+++.|++.+.+.+..... .+..--.++..++.+. .++|+
T Consensus 57 r~~l~~~~~~~~~~~~pvi~gv~-~~s~~~~i~~a~~a~~~Gad~~~v~~p~~~~---~~~~~~~~~~~~~~~~~~~~~i 132 (295)
T d1hl2a_ 57 REQVLEIVAEEAKGKIKLIAHVG-CVSTAESQQLAASAKRYGFDAVSAVTPFYYP---FSFEEHCDHYRAIIDSADGLPM 132 (295)
T ss_dssp HHHHHHHHHHHHTTTSEEEEECC-CSSHHHHHHHHHHHHHHTCSEEEEECCCSSC---CCHHHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHhhhHHhhccccceeeccc-cchhhHHHHHHHHHHhcCCceeeeeeccccC---CChHHHHHHHHHHhcccCcCcc
Confidence 345566555544 578877553 3456889999999999999999998764321 1111123444455443 35677
Q ss_pred EE------cCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 84 LA------NGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 84 i~------nGgI~s~~da~~~l~~~gadgVmig 110 (230)
+. +|---+++.+.++.+...+-|+=.+
T Consensus 133 i~y~~P~~~g~~l~~~~l~~L~~~pnvvgiK~~ 165 (295)
T d1hl2a_ 133 VVYNIPARSGVKLTLDQINTLVTLPGVGALKQT 165 (295)
T ss_dssp EEEECHHHHCCCCCHHHHHHHHTSTTEEEEEEC
T ss_pred cccccccccccccccccccccccCcchhhhccc
Confidence 63 3334577777776654444444333
|
| >d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Mll9387-like domain: Uncharacterized protein Mll9387 species: Mesorhizobium loti [TaxId: 381]
Probab=84.09 E-value=4.4 Score=30.56 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcC-CceEEEEECCCCC-hHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCc---------cc----HHH
Q 026945 7 VKSLVEKLALNL-NVPVSCKIRVFPN-LQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFR---------AD----WNA 71 (230)
Q Consensus 7 ~~eiv~~v~~~~-~~pvsvKiR~g~~-~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~---------~~----~~~ 71 (230)
+.++.+.+...+ ++||.+-+- |++ ..+....++.++++|+..|++-++... ..+. .+ .+.
T Consensus 73 ~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rtv~~~~~aG~agI~~~pk~g~----~~g~~~~~~e~a~~~~~~~~d~ 147 (197)
T d2p10a1 73 VVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTFLRELKEIGFAGVQNFPTVGL----IDGLFRQNLEETGMSYAQEVEM 147 (197)
T ss_dssp HHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHHHHHHHHHTCCEEEECSCGGG----CCHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHhcccCceEEecC-CCCcchhHHHHHHHHHHcCCeEEeccccccC----ccchhhhhHHHHHHHhccCccH
Confidence 345555565544 799999997 653 457888899999999999987553211 1110 01 111
Q ss_pred HHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEE
Q 026945 72 IKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLS 109 (230)
Q Consensus 72 i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmi 109 (230)
+-..+ .+-. +..|=-.+.+.++.+.+ .|||.|.+
T Consensus 148 liiAR--tda~-~~~g~~~Ai~Ra~ay~e-AGAD~i~~ 181 (197)
T d2p10a1 148 IAEAH--KLDL-LTTPYVFSPEDAVAMAK-AGADILVC 181 (197)
T ss_dssp HHHHH--HTTC-EECCEECSHHHHHHHHH-HTCSEEEE
T ss_pred HHHHH--Hhhh-hhccHHHHHHHHHHHHH-cCCCEEEE
Confidence 11111 1211 22455578999988875 89999977
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.88 E-value=2.4 Score=33.40 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=57.0
Q ss_pred hHHHHHHHHHHh---hcCCceEEEEECC-CCCh-HHHHHHHHHHHHcCCCEEEEec-CCCCCcCCCCCcccHHHHHHHHh
Q 026945 4 LPLVKSLVEKLA---LNLNVPVSCKIRV-FPNL-QDTIKYAKMLEDAGCSLLAVHG-RTRDEKDGKKFRADWNAIKAVKN 77 (230)
Q Consensus 4 p~~~~eiv~~v~---~~~~~pvsvKiR~-g~~~-~~~~~~a~~l~~~G~~~i~vh~-rt~~~~~~~~~~~~~~~i~~i~~ 77 (230)
++-..++++.++ +..+.|+.+-.-+ |+.. +.-.+..+...+.|+|+|.++- |+ .-|...++.+-+
T Consensus 40 ~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ialSFVr~---------~~Dv~~~r~~l~ 110 (246)
T d1e0ta2 40 YAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIRK---------RSDVIEIREHLK 110 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHHTCSEEEESSCCS---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHcCCCEEEEcCCCC---------HHHHHHHHHHHH
Confidence 344445555444 3457777766554 3432 2233445556678999998853 22 224455554433
Q ss_pred hC---CccEEEcCCCCCHHHH---HHHHHhhCCcEEEEehhhhhC
Q 026945 78 AL---RIPVLANGNVRHMEDV---QKCLEETGCEGVLSAESLLEN 116 (230)
Q Consensus 78 ~~---~ipvi~nGgI~s~~da---~~~l~~~gadgVmigR~~l~n 116 (230)
.. +++|++ -|.+.+.+ .+.++ -+|||||+||=|+-
T Consensus 111 ~~~~~~~~iia--KIE~~~al~nldeIi~--~sDgImIaRGDLg~ 151 (246)
T d1e0ta2 111 AHGGENIHIIS--KIENQEGLNNFDEILE--ASDGIMVARGDLGV 151 (246)
T ss_dssp TTTCTTCEEEE--EECSHHHHHTHHHHHH--HSSEEEEEHHHHHH
T ss_pred HhCCCCceEEE--EecchhhhhchHHHHh--hcceEEEEccchhh
Confidence 22 355665 45555544 44554 47999999998775
|
| >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=0.27 Score=39.34 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=33.1
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||++.|+| +++.+.+++...++||+.||++.+ +|.-|.++
T Consensus 204 ~v~iLYGGSV-~~~N~~~i~~~~~vdG~LVGgASl-~~~~F~~I 245 (255)
T d1trea_ 204 QVIIQYGGSV-NASNAAELFAQPDIDGALVGGASL-KADAFAVI 245 (255)
T ss_dssp HCEEEECSCC-CTTTHHHHHTSTTCCEEEESGGGG-CHHHHHHH
T ss_pred CccEEecCCc-CHhHHHHHhcCCCCCEEEechhhc-CHHHHHHH
Confidence 5899999999 577888899889999999997554 45545544
|
| >d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Vibrio marinus [TaxId: 90736]
Probab=83.42 E-value=0.28 Score=39.22 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=33.3
Q ss_pred CccEEEcCCCCCHHHHHHHHHhhCCcEEEEehhhhhCCccccch
Q 026945 80 RIPVLANGNVRHMEDVQKCLEETGCEGVLSAESLLENPALFAGF 123 (230)
Q Consensus 80 ~ipvi~nGgI~s~~da~~~l~~~gadgVmigR~~l~nP~lf~~~ 123 (230)
++||+..|.| +++.+.+.+...++||+.||++.+. |.-|.++
T Consensus 205 ~i~ilYGGSV-~~~N~~~i~~~~~vDG~LVG~ASl~-~~~F~~I 246 (255)
T d1aw1a_ 205 NVVIQYGGSV-KPENAAAYFAQPDIDGALVGGAALD-AKSFAAI 246 (255)
T ss_dssp HCEEEECSCC-CTTTHHHHHTSTTCCEEEESGGGGS-HHHHHHH
T ss_pred cceEEEcCCC-CHhHHHHHhcCCCCCeEEechHhcC-HHHHHHH
Confidence 4899998888 5788999998899999999986654 5445443
|
| >d2a21a1 c.1.10.4 (A:1002-1264) 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-manno-octulosonate 8-phosphate synthase (KDO8P synthase) species: Aquifex aeolicus [TaxId: 63363]
Probab=83.40 E-value=1.4 Score=34.89 Aligned_cols=41 Identities=20% Similarity=0.120 Sum_probs=33.4
Q ss_pred hcCCceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCC
Q 026945 16 LNLNVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRT 56 (230)
Q Consensus 16 ~~~~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt 56 (230)
..++.||.+|--.+.+..++...++.+...|.+.+.+-.|.
T Consensus 114 ~~~~~pV~~K~g~~~~~~~~~~a~e~~~~~G~~~v~~~eRg 154 (263)
T d2a21a1 114 AKTGRAVNVKKGQFLAPWDTKNVVEKLKFGGAKEIYLTERG 154 (263)
T ss_dssp HTTTSEEEEECCTTCCGGGGHHHHHHHHHTTCSSEEEEECC
T ss_pred hccCCcccccccccCchhhhhhhhHHHHhCCCceEEeeccc
Confidence 34689999999887778888999999999999777665554
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.09 E-value=1.5 Score=33.73 Aligned_cols=85 Identities=5% Similarity=-0.026 Sum_probs=58.5
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecC--CCCCcCCCCCcccHHHHHHHHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGR--TRDEKDGKKFRADWNAIKAVKNALRIPVLANGNVRHMEDVQKCLEETGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~r--t~~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVm 108 (230)
|..+..+-++.++++|+++|++--- .... .. ....+.++.+++..++|+-+-=-+.+|+...+.+...|+|.|.
T Consensus 12 d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvp--n~--s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~ 87 (217)
T d2flia1 12 DYANFASELARIEETDAEYVHIDIMDGQFVP--NI--SFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMT 87 (217)
T ss_dssp CGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS--CB--CBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEcccCcCCC--cc--ccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEE
Confidence 5556777888999999999998522 2211 11 2245788888888888776554566777777777678999888
Q ss_pred EehhhhhCCcc
Q 026945 109 SAESLLENPAL 119 (230)
Q Consensus 109 igR~~l~nP~l 119 (230)
+=-....+|.-
T Consensus 88 ~H~E~~~~~~~ 98 (217)
T d2flia1 88 IHTESTRHIHG 98 (217)
T ss_dssp EEGGGCSCHHH
T ss_pred eccccccCHHH
Confidence 86655556543
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=81.17 E-value=7.9 Score=28.07 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=49.3
Q ss_pred HHHHHHhhcC-CceEEEEECCCCChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHHHHHHHHhhCCcc-EEEc
Q 026945 9 SLVEKLALNL-NVPVSCKIRVFPNLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWNAIKAVKNALRIP-VLAN 86 (230)
Q Consensus 9 eiv~~v~~~~-~~pvsvKiR~g~~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~~i~~i~~~~~ip-vi~n 86 (230)
++++.+++.. +.++.+..-+. +..+ .+++.+.++|+|.+++|+... .-....+.+..+..+.. .+..
T Consensus 43 ~~i~~l~~~~~~~~i~~d~k~~-d~~~--~~~~~~~~~gad~vtvh~~~g--------~~~~~~~~~~~~~~~~~~~v~~ 111 (213)
T d1q6oa_ 43 RAVRDLKALYPHKIVLADAKIA-DAGK--ILSRMCFEANADWVTVICCAD--------INTAKGALDVAKEFNGDVQIEL 111 (213)
T ss_dssp HHHHHHHHHCTTSEEEEEEEEC-SCHH--HHHHHHHHTTCSEEEEETTSC--------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcccccceeEEeec-cchH--HHHHHHHHcCCCEEEEeccCC--------chHHHHHHHHHHHcCCceeccc
Confidence 3455555543 45555433322 2222 356777899999999997421 11122222223334433 2333
Q ss_pred CCCCCHHHHHHHHHhhCCcEEEEeh
Q 026945 87 GNVRHMEDVQKCLEETGCEGVLSAE 111 (230)
Q Consensus 87 GgI~s~~da~~~l~~~gadgVmigR 111 (230)
-...+.+......+ .+++.+.+.+
T Consensus 112 ~~~~~~~~~~~~~~-~~~~~~~~~~ 135 (213)
T d1q6oa_ 112 TGYWTWEQAQQWRD-AGIGQVVYHR 135 (213)
T ss_dssp CSCCCHHHHHHHHH-TTCCEEEEEC
T ss_pred CCCCCHHHHHHHHH-hHHHHHHHHH
Confidence 45567778777765 6788777654
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=80.73 E-value=4.6 Score=31.68 Aligned_cols=122 Identities=7% Similarity=0.092 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCCCcCCCCCcccHH-HHHHHHhhCCccEEEcCCCCCHHHHHHHHHh-hCCcEEE
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRDEKDGKKFRADWN-AIKAVKNALRIPVLANGNVRHMEDVQKCLEE-TGCEGVL 108 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~~~~~~~~~~~~~-~i~~i~~~~~ipvi~nGgI~s~~da~~~l~~-~gadgVm 108 (230)
|.+...+.|+.+.+.|++.|.|-..... ......+. .+..+.+..++||.. |-++++-++.+++. .|++.|=
T Consensus 23 d~~~~~~~A~~m~~~GAdiIDIg~g~~~----~~e~e~~~~vi~~l~~~~~vpiSI--DT~~~~v~~aal~~~~Ga~iIN 96 (262)
T d1f6ya_ 23 DPAPVQEWARRQEEGGARALDLNVGPAV----QDKVSAMEWLVEVTQEVSNLTLCL--DSTNIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBCC--------CHHHHHHHHHHHHHTTCCSEEEE--ECSCHHHHHHHHHHCSSCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEeCCCCCC----CCHHHHHHHHHHHHHHhhcCCccc--cCCccHHHHHHHHhhcccceee
Confidence 4567889999999999999999532111 00111222 233445556888776 67789999999975 4888775
Q ss_pred EehhhhhCCccccchhhhh----h-ccCccccCCCChHHHHHHHHHHHHHHhhCC
Q 026945 109 SAESLLENPALFAGFRTAE----W-IVGSEEISKDGNLDQADLLVEYLKLCEKYP 158 (230)
Q Consensus 109 igR~~l~nP~lf~~~~~~~----~-~~~g~~~~~~~~~~~~~~~~~yl~~~~~~~ 158 (230)
--.|+-.++.....+.... . ...+....+.+..++.+++.+.++.+.++|
T Consensus 97 dIsg~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 151 (262)
T d1f6ya_ 97 STNAEREKVEKLFPLAVEHGAALIGLTMNKTGIPKDSDTRLAFAMELVAAADEFG 151 (262)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEEESCCSSCSCSSHHHHHHHHHHHHHHHHHHT
T ss_pred chhcccchHHHHHHHHhcCCceEEEEecCCcccccCHHHHHHHHHHHHHHHHHcC
Confidence 5555544443222111100 0 001112223566788888888888887765
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.39 E-value=11 Score=31.23 Aligned_cols=78 Identities=26% Similarity=0.352 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEecCCCC----------------------------Cc--------CCCCCcccHHHHHH
Q 026945 31 NLQDTIKYAKMLEDAGCSLLAVHGRTRD----------------------------EK--------DGKKFRADWNAIKA 74 (230)
Q Consensus 31 ~~~~~~~~a~~l~~~G~~~i~vh~rt~~----------------------------~~--------~~~~~~~~~~~i~~ 74 (230)
+......+.++++++|++.+.+|.=... .. .......+|+.+.+
T Consensus 161 ~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~i~~ 240 (414)
T d1kbia1 161 DRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEE 240 (414)
T ss_dssp SHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHhcccCCCHHHHHH
Confidence 4456778889999999999888731110 00 00112458999999
Q ss_pred HHhhCCccEEEcCCCCCHHHHHHHHHhhCCcEEEEe
Q 026945 75 VKNALRIPVLANGNVRHMEDVQKCLEETGCEGVLSA 110 (230)
Q Consensus 75 i~~~~~ipvi~nGgI~s~~da~~~l~~~gadgVmig 110 (230)
++...+.|+++- ++.+.+++..+.+ .|+|++.+.
T Consensus 241 i~~~~~~~~i~k-gi~~~~da~~~~~-~G~~~i~vs 274 (414)
T d1kbia1 241 LKKKTKLPIVIK-GVQRTEDVIKAAE-IGVSGVVLS 274 (414)
T ss_dssp HHHHCSSCEEEE-EECSHHHHHHHHH-TTCSEEEEC
T ss_pred HhccCCceEEee-ccchhHHHHHHHh-cCCcceeec
Confidence 999999999886 4568999999886 899999874
|