Citrus Sinensis ID: 026954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD
Secondary Structure (PSIPRED)
cccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEHccEEEEEccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
METERKKQELRHLGFMRIAAIQALVCVSSLYDyakrnsgplrspvgtvesaVTAVvgpvyqkfkgvpdDLLVFLDKKVDEAsrkfdehappLAKRVASQVHSLIETASQKAQNLVSeaqtggprAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKgytvfgylplvpiDDIAKAFkqseapkkedapekedakekdsssdsd
Flexible Loop (DISEMBL)
meterkkqeLRHLGFMRIAAIQALVCVSSLYDYAKRnsgplrspvgtvESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASrkfdehapplAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQseapkkedapekedakekdsssdsd
Low Complexity Region (SEG)
METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPddllvfldkkvdEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQseapkkedapekedakekdsssdsd
Disordered region (IsUnstruct)
**********RHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKV**********************************************AAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKA****************************
Disordered Region (DISOPRED)
************LGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIA******************************
Disordered Region (DISEMBL)
*********LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ*************************
Disordered Region (DISPRO)
*****KKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQS************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9FYF7	240	REF/SRPP-like protein At1	yes	no	1.0	0.958	0.575	2e-71
Q9SW70	248	Stress-related protein OS	N/A	no	0.882	0.818	0.412	5e-39
Q9MA63	246	REF/SRPP-like protein At3	no	no	0.873	0.817	0.393	3e-33
O82246	235	REF/SRPP-like protein At2	no	no	0.821	0.804	0.326	8e-27
O82803	204	Small rubber particle pro	N/A	no	0.856	0.965	0.365	2e-26
Q41112	167	Stress-related protein OS	N/A	no	0.691	0.952	0.402	5e-26
Q9FRA7	253	REF/SRPP-like protein Os0	no	no	0.821	0.747	0.394	2e-24
A2Y0H2	253	REF/SRPP-like protein OsI	N/A	no	0.821	0.747	0.394	2e-24
P15252	138	Rubber elongation factor	N/A	no	0.491	0.818	0.345	5e-12

>sp|Q9FYF7|Y1736_ARATH REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1

 Score =  268 bits (686), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 138/240 (57%), Positives = 171/240 (71%), Gaps = 10/240 (4%)

Query: 1   METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
           METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV 
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 58  PVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
           PVYQKFK VPD LLVFLD KV E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
           A+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDA------PEKEDAKEKD-SSSDSD 230
            +MT  GY++ GYLPLVP+DDI KA+++ +A +K+         E  DA + D SSSDS+
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SW70|SRP_VITRI Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1

 Score =  160 bits (406), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/218 (41%), Positives = 128/218 (58%), Gaps = 15/218 (6%)

Query: 6   KKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKG 65
           +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  
Sbjct: 16  EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYD 75

Query: 66  VPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRA 125
           VP +LL+F+D+KV+ +  + + H P L KR + Q  ++ + A + A  + SE Q  G   
Sbjct: 76  VPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVD 135

Query: 126 AVH------YAAAE-------SKHLLVTN--SVKAWYKLNHYALFHTMADMAVPTAAQWS 170
                    Y+  E       SK+  V    +V AW  LN   LF  +A + VPTAA WS
Sbjct: 136 TAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWS 195

Query: 171 KKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
           +KYN  V    ++GYTV  YLPL+P + IAK F+   A
Sbjct: 196 EKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSA 233

Vitis riparia (taxid: 96939)

>sp|Q9MA63|Y3550_ARATH REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/226 (39%), Positives = 133/226 (58%), Gaps = 25/226 (11%)

Query: 3   TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
           T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K
Sbjct: 15  TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query: 63  FKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRV------------------ASQVH--S 102
           +  VP ++L ++D+KVD +  + D   PP+ K+V                  AS+V    
Sbjct: 75  YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query: 103 LIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMA 162
           ++ETAS  A+++ S+ +   P A   YA  E K      +V AW KLN   LF  +A +A
Sbjct: 135 VVETASGMAKSVYSKYE---PAAKELYANYEPKA--EQCAVSAWKKLNQLPLFPRLAQVA 189

Query: 163 VPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
           VPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F + +A
Sbjct: 190 VPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKA 235

Arabidopsis thaliana (taxid: 3702)

>sp|O82246|Y2778_ARATH REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1

 Score =  120 bits (301), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 68/208 (32%), Positives = 111/208 (53%), Gaps = 19/208 (9%)

Query: 7   KQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGV 66
           + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  V
Sbjct: 38  EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDV 97

Query: 67  PDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQK------AQNLVSEAQT 120
           P  LL+F+D+KVD+     + + P L K+ +SQ  + + T  Q+       +++    + 
Sbjct: 98  PFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALT-VATEVQRTGVVDTTKSIARSVRD 156

Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
               AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +
Sbjct: 157 KYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYV 204

Query: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
             + Y    YLP++PI+ I+   +Q + 
Sbjct: 205 GDRDYFGAEYLPMIPIEKISDILEQDQC 232

Arabidopsis thaliana (taxid: 3702)

>sp|O82803|SRPP_HEVBR Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/205 (36%), Positives = 114/205 (55%), Gaps = 8/205 (3%)

Query: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60
           M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY
Sbjct: 1   MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVY 60

Query: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120
                +P + + F+DK VD +    D   PP+ K+V++Q +S+ + A +   ++ S    
Sbjct: 61  Y----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFN 116

Query: 121 GGPR--AAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVV 178
            G +  A   YA  E K      +V  W  LN   L   +A++ VPTA  +S+KYN +V 
Sbjct: 117 TGVQEGAKALYANLEPKAE--QYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVR 174

Query: 179 EMTKKGYTVFGYLPLVPIDDIAKAF 203
             T++GY V  YLPL+P + I K F
Sbjct: 175 GTTEQGYRVSSYLPLLPTEKITKVF 199

Involved in the biosynthesis of rubber, an isoprenoid polymer (cis-1,4-polyisoprene).

Hevea brasiliensis (taxid: 3981)

>sp|Q41112|SRP_PHAVU Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1

 Score =  117 bits (294), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/174 (40%), Positives = 95/174 (54%), Gaps = 15/174 (8%)

Query: 30  LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHA 89
           LY YAK  +GPL+  V TVE AV  VV PVY +F  VP +LL + D+KV E     D H 
Sbjct: 6   LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHV 61

Query: 90  PPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKL 149
           P   K+V+SQ           A+++VSE +  G         ++ +      +V AW KL
Sbjct: 62  PSNVKKVSSQ-----------ARSVVSEVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKL 110

Query: 150 NHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAF 203
           N   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + IAK F
Sbjct: 111 NQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164

Plays a role in plant defense.

Phaseolus vulgaris (taxid: 3885)

>sp|Q9FRA7|Y5513_ORYSJ REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 14/203 (6%)

Query: 10  LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDD 69
           LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP D
Sbjct: 35  LRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLD 94

Query: 70  LLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQT 120
           LL FLD+KV E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+ 
Sbjct: 95  LLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE- 153

Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
             PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V + 
Sbjct: 154 --PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADG 209

Query: 181 TKKGYTVFGYLPLVPIDDIAKAF 203
            K+G  V  YLPLVP + +++ F
Sbjct: 210 AKRGSAVATYLPLVPTERLSRVF 232

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y0H2|Y5513_ORYSI REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 115/203 (56%), Gaps = 14/203 (6%)

Query: 10  LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDD 69
           LR+L F++ AA Q LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP D
Sbjct: 35  LRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLD 94

Query: 70  LLVFLDKKVDEASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQNLVSEAQT 120
           LL FLD+KV E+ ++ D   PP       LA+  A++V    L+ TA+  A++ ++ A+ 
Sbjct: 95  LLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE- 153

Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
             PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V + 
Sbjct: 154 --PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADG 209

Query: 181 TKKGYTVFGYLPLVPIDDIAKAF 203
            K+G  V  YLPLVP + +++ F
Sbjct: 210 AKRGSAVATYLPLVPTERLSRVF 232

Oryza sativa subsp. indica (taxid: 39946)

>sp|P15252|REF_HEVBR Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 63/113 (55%)

Query: 4   ERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKF 63
           + + + L++LGF++ AA  A+   S++Y +AK  SGPL+  V  +E  V  V  P+Y +F
Sbjct: 9   QGQGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRF 68

Query: 64  KGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVS 116
             +P+  L F+D  V  +    D   PP+ K  + QV S I  A + A++L S
Sbjct: 69  SYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLAS 121

May be part of the rubber biosynthesis machinery. Plays a role in rubber elongation.

Hevea brasiliensis (taxid: 3981)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
224053483	229	predicted protein [Populus trichocarpa]	0.930	0.934	0.691	4e-82
356566130	235	PREDICTED: REF/SRPP-like protein At1g673	0.978	0.957	0.612	3e-78
225425424	228	PREDICTED: REF/SRPP-like protein At1g673	0.908	0.916	0.674	2e-77
255637383	235	unknown [Glycine max]	0.982	0.961	0.600	1e-76
224075569	228	predicted protein [Populus trichocarpa]	0.930	0.938	0.682	1e-76
255547720	229	Small rubber particle protein, putative	0.982	0.986	0.656	1e-76
356540142	236	PREDICTED: REF/SRPP-like protein At1g673	0.982	0.957	0.599	6e-75
255638498	236	unknown [Glycine max]	0.982	0.957	0.594	5e-74
297841421	246	rubber elongation factor family protein	1.0	0.934	0.582	9e-73
351724447	217	uncharacterized protein LOC100499806 [Gl	0.904	0.958	0.605	1e-71

>gi|224053483|ref|XP_002297837.1| predicted protein [Populus trichocarpa] gi|118481463|gb|ABK92674.1| unknown [Populus trichocarpa] gi|222845095|gb|EEE82642.1| predicted protein [Populus trichocarpa]

 Score =  310 bits (793), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/217 (69%), Positives = 175/217 (80%), Gaps = 3/217 (1%)

Query: 1   METE---RKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
           ME E   RK  +L+HLGF+RIAAIQ LVCVS+LYDYAKRNSGPLRS VGTVE  V AVVG
Sbjct: 1   MEVENSKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVG 60

Query: 58  PVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
           PVY+KFKGVPD LLVFLD KVDEA+ KFD+ APP+AK+V SQ   LIE AS+KA+ L +E
Sbjct: 61  PVYEKFKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANE 120

Query: 118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
            Q GGPRAAVHY + ESKHL +T SVK W KL+ Y   H +A++AVPTAA WS+KYNH V
Sbjct: 121 FQAGGPRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFV 180

Query: 178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDA 214
            EM++KGY VFGYLP+VP+D+I+ AFKQ EA KKEDA
Sbjct: 181 KEMSQKGYVVFGYLPVVPVDEISNAFKQGEAEKKEDA 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566130|ref|XP_003551288.1| PREDICTED: REF/SRPP-like protein At1g67360-like isoform 1 [Glycine max] gi|356566132|ref|XP_003551289.1| PREDICTED: REF/SRPP-like protein At1g67360-like isoform 2 [Glycine max]

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 139/227 (61%), Positives = 175/227 (77%), Gaps = 2/227 (0%)

Query: 4   ERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKF 63
           E K ++L+HLGF+RIAAIQ  V VS+LY+YAK+NSGPLRS VGTVE+ VT ++GPV  KF
Sbjct: 11  ESKNKDLKHLGFVRIAAIQTFVIVSNLYEYAKQNSGPLRSVVGTVENTVTTILGPVCNKF 70

Query: 64  KGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGP 123
           K VPDD+LVF+DKKVDEAS KFDEHAPP AK +A Q   +I+  + +A  + SEAQ+GGP
Sbjct: 71  KDVPDDVLVFVDKKVDEASHKFDEHAPPFAKHIADQAKGVIQKVTCEAGKVASEAQSGGP 130

Query: 124 RAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 183
           RAAVHY A ESKH ++ NSVK W  LNHY  FH +++MA+PT A WS+KYNH++  MT+K
Sbjct: 131 RAAVHYVATESKHFVLINSVKLWNGLNHYPPFHALSEMAIPTVAHWSEKYNHVIKAMTQK 190

Query: 184 GYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD 230
           GY+  GYLPL+PI++IAKAFKQ EA  K D    E+  ++  SSDSD
Sbjct: 191 GYSFVGYLPLIPIEEIAKAFKQGEANLKGDNAASEE--QRSESSDSD 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425424|ref|XP_002278036.1| PREDICTED: REF/SRPP-like protein At1g67360-like [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 165/209 (78%)

Query: 3   TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
            E +K+EL+HLGF+RIAAIQALVCVS+LY YAK+NSGPLRS VG VE AVTAV+ PVY K
Sbjct: 4   CEMEKRELKHLGFVRIAAIQALVCVSNLYYYAKQNSGPLRSTVGAVEDAVTAVISPVYDK 63

Query: 63  FKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG 122
           FKGVPD LLVF+DKKVDE S KFD+HAPP+AK V  Q   L+  AS+ AQ LVSEA+ GG
Sbjct: 64  FKGVPDHLLVFMDKKVDEVSAKFDKHAPPVAKEVVGQAQCLVLKASKTAQTLVSEAKAGG 123

Query: 123 PRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTK 182
           P AA+ +AA   K  ++T  VK W+ LN   LFHT+ADMAVPTAA WS KYNH+V +M+ 
Sbjct: 124 PSAALQHAATAYKLFMLTQLVKLWFILNKVPLFHTVADMAVPTAAHWSDKYNHVVTDMSV 183

Query: 183 KGYTVFGYLPLVPIDDIAKAFKQSEAPKK 211
           KGYT+FGY PLVPID IAK FKQSEA K+
Sbjct: 184 KGYTIFGYFPLVPIDKIAKTFKQSEAGKE 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255637383|gb|ACU19020.1| unknown [Glycine max]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/228 (60%), Positives = 174/228 (76%), Gaps = 2/228 (0%)

Query: 3   TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
            E K ++L+HLGF+RIAAIQ  V VS+LY+YAK+NSGPLRS VGTVE+ VT ++GPV  K
Sbjct: 10  VESKNKDLKHLGFVRIAAIQTFVIVSNLYEYAKQNSGPLRSVVGTVENTVTTILGPVCNK 69

Query: 63  FKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGG 122
           FK VPDD+LVF+DKKVDEAS KFDEHAPP AK +A Q   +I+  + +A  + SEAQ+GG
Sbjct: 70  FKDVPDDVLVFVDKKVDEASHKFDEHAPPFAKHIADQAKGVIQKVTCEAGKVASEAQSGG 129

Query: 123 PRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTK 182
           PRAAVHY A ESKH ++ NSVK W  LNHY  FH +++MA+PT A WS+KYNH++  MT+
Sbjct: 130 PRAAVHYVATESKHFVLINSVKLWNGLNHYPPFHALSEMAIPTVAHWSEKYNHVIKAMTQ 189

Query: 183 KGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD 230
           KGY+  GYLPL+PI++IAKAFKQ EA  K D+   E+  ++  S D D
Sbjct: 190 KGYSFVGYLPLIPIEEIAKAFKQGEANLKGDSAAFEE--QRSESFDFD 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075569|ref|XP_002304688.1| predicted protein [Populus trichocarpa] gi|222842120|gb|EEE79667.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/214 (68%), Positives = 171/214 (79%)

Query: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60
           +E+ +K  EL+HLGF+RIA IQ LV VSSLYDYAKRNSGPLRSPVG VE  V+AVV PVY
Sbjct: 3   VESSKKDLELKHLGFVRIATIQILVSVSSLYDYAKRNSGPLRSPVGAVEGTVSAVVSPVY 62

Query: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120
            K KGVPD LLVFLD KVD A+ KFD+HAPP+AK+V SQ H LIE AS+KA+ L +E Q 
Sbjct: 63  DKLKGVPDHLLVFLDHKVDGATAKFDKHAPPVAKQVVSQAHYLIEKASEKAKVLANEFQA 122

Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
           GGPRAA+HY A ESKHL +T SVK W KL+ ++  H +A +AVP AA WS KYNH V EM
Sbjct: 123 GGPRAALHYVATESKHLFLTESVKVWVKLDQFSFVHKVAGVAVPAAAHWSDKYNHFVKEM 182

Query: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDA 214
            +KGYTVFGYLP+VPI++I+KAFKQ EA KKEDA
Sbjct: 183 NQKGYTVFGYLPVVPIEEISKAFKQEEAEKKEDA 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547720|ref|XP_002514917.1| Small rubber particle protein, putative [Ricinus communis] gi|223545968|gb|EEF47471.1| Small rubber particle protein, putative [Ricinus communis]

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/233 (65%), Positives = 189/233 (81%), Gaps = 7/233 (3%)

Query: 1   METERK--KQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGP 58
           METE+K   +EL+HLGF+R+ A+Q LVCVS+LYDYAK+NSGPLRS VGTVE+AVT VVGP
Sbjct: 1   METEKKMNSKELKHLGFVRMVAVQTLVCVSNLYDYAKQNSGPLRSTVGTVETAVTTVVGP 60

Query: 59  VYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEA 118
           VYQKFK +PD LLVF+D KVDE ++KFD+HAPP+AK+VASQ  +L++ A QK Q LV+EA
Sbjct: 61  VYQKFKDLPDHLLVFVDNKVDEGTQKFDKHAPPVAKQVASQAQTLMQVALQKVQELVNEA 120

Query: 119 QTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVV 178
           + GG RAAVH+AA ESKHL +T SVK W KLN +   HT+ADMAVPTAA WS+KYNH++ 
Sbjct: 121 RVGGARAAVHFAAKESKHLALTQSVKVWIKLNQFPAVHTVADMAVPTAAHWSEKYNHVIK 180

Query: 179 EMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKED-AKEKDSSSDSD 230
           +MT+KG+T+FGYLPLVP+D+IAKAFKQ     K  A EK + A  +  SSDSD
Sbjct: 181 DMTQKGHTLFGYLPLVPVDEIAKAFKQG----KTKAGEKANVAAHQSDSSDSD 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540142|ref|XP_003538549.1| PREDICTED: REF/SRPP-like protein At1g67360-like [Glycine max]

 Score =  286 bits (731), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 173/227 (76%), Gaps = 1/227 (0%)

Query: 4   ERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKF 63
           E K +EL+HLGF+RIAAIQ  V VS+LY+YAK+NSGPLRS VGTVE+ VT V+GPV  KF
Sbjct: 11  ESKNKELKHLGFVRIAAIQTFVIVSNLYEYAKQNSGPLRSAVGTVENTVTTVLGPVCNKF 70

Query: 64  KGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGP 123
           K  PDD+LV++DKKVDEAS KFDEHAP  AK +A Q   +I+  + +A  + SEAQ+GG 
Sbjct: 71  KDFPDDVLVYVDKKVDEASHKFDEHAPSFAKHLADQAKGVIQKVTCEAGKVASEAQSGGS 130

Query: 124 RAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 183
           RAAVH+ A ESKH ++ NSVK W  L HY  FH +A++AVPTAA WS+KYNH++  MT+K
Sbjct: 131 RAAVHFVATESKHFVLINSVKLWNGLTHYPPFHALAEIAVPTAAHWSEKYNHVIKAMTQK 190

Query: 184 GYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD 230
           GY+  GYLPL+P+++IAKAFKQ EA  K D    E+ +  +S+SDSD
Sbjct: 191 GYSFIGYLPLIPVEEIAKAFKQGEANLKGDNAASEEQR-LESASDSD 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638498|gb|ACU19558.1| unknown [Glycine max]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 172/227 (75%), Gaps = 1/227 (0%)

Query: 4   ERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKF 63
           E K +EL+HLGF+RIAAIQ  V VS+LY+YAK+NSGPLRS VGTVE+ VT V+GPV  KF
Sbjct: 11  ESKNKELKHLGFVRIAAIQTFVIVSNLYEYAKQNSGPLRSAVGTVENTVTTVLGPVCNKF 70

Query: 64  KGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGP 123
           K  PDD+LV++DKKVDEAS KFDEHAP  AK +A Q   +I+  + +A  + SEAQ+GG 
Sbjct: 71  KDFPDDVLVYVDKKVDEASHKFDEHAPSFAKHLADQAKGVIQKVTCEAGKVASEAQSGGS 130

Query: 124 RAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKK 183
           RAAVH+ A ESKH ++ NSVK W  L HY  FH +A++AVPTAA WS+KYNH++  MT+K
Sbjct: 131 RAAVHFVATESKHFVLINSVKLWNGLTHYPPFHALAEIAVPTAAHWSEKYNHVIKAMTQK 190

Query: 184 GYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKEDAKEKDSSSDSD 230
           G +  GYLPL+P+++IAKAFKQ EA  K D    E+ +  +S+SDSD
Sbjct: 191 GCSFIGYLPLIPVEEIAKAFKQGEANLKGDNAASEEQR-LESASDSD 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841421|ref|XP_002888592.1| rubber elongation factor family protein [Arabidopsis lyrata subsp. lyrata] gi|297334433|gb|EFH64851.1| rubber elongation factor family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  278 bits (712), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 138/237 (58%), Positives = 174/237 (73%), Gaps = 7/237 (2%)

Query: 1   METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
           METE+K  +   L+HLGF+RIAAIQ L  VS+LYDYAK+NSGPL+S V  VE AVT VV 
Sbjct: 1   METEKKNSKEVGLKHLGFVRIAAIQILASVSNLYDYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 58  PVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
           PVYQKFK VPD LLVFLD KV E S KFDEHAPP+AK+V +Q H LI  A++KAQN V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKQVVNQAHVLIYKATEKAQNFVKE 120

Query: 118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
           A+TGGP+AA  YAA E K+ +VTNSVK W KLN Y   H + D A+P AA  S +YN LV
Sbjct: 121 ARTGGPKAAFSYAATEYKYFVVTNSVKVWAKLNQYKPIHAVGDKALPVAAHLSSRYNDLV 180

Query: 178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKEDAPEKE----DAKEKDSSSDSD 230
            +MT+ GY++ GYLPLVP+DDI KA+K+ +A +K+    +E    D K+ ++++ +D
Sbjct: 181 TDMTQMGYSLVGYLPLVPVDDIVKAYKKEDAARKKGGESEETATTDGKKGETANTTD 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724447|ref|NP_001236290.1| uncharacterized protein LOC100499806 [Glycine max] gi|255626779|gb|ACU13734.1| unknown [Glycine max]

 Score =  275 bits (703), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 166/208 (79%)

Query: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60
           ME +  ++EL+HLGF++IAAI+A VCVS+LYD+AK+NSGPLRS VGTVE  VT V+GPVY
Sbjct: 9   MENKSDQEELKHLGFVKIAAIKAFVCVSNLYDFAKQNSGPLRSAVGTVEDTVTTVLGPVY 68

Query: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120
            +FK VP+ LL+F D KVDEA+ KFDEHAP L K+VA+QV  L++  + KA+ +VSEAQ+
Sbjct: 69  HQFKAVPNHLLLFADNKVDEAAHKFDEHAPSLVKQVATQVTCLVQEVTHKAEKVVSEAQS 128

Query: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180
           GG RAA +Y A ESK ++++ SVK W  LN Y  FH++A+MAVP AA WS+KYN++V   
Sbjct: 129 GGARAAANYVATESKQIVLSGSVKLWTGLNQYPPFHSVAEMAVPRAAHWSEKYNNVVKGT 188

Query: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEA 208
           ++KG+ VFGYLPL+PID+IA AFKQ +A
Sbjct: 189 SEKGFAVFGYLPLIPIDEIATAFKQEKA 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2019579	240	AT1G67360 [Arabidopsis thalian	0.891	0.854	0.567	5.1e-58
TAIR|locus:2079782	246	AT3G05500 [Arabidopsis thalian	0.882	0.825	0.371	1.5e-28
TAIR|locus:2043373	235	AT2G47780 "AT2G47780" [Arabido	0.834	0.817	0.301	3e-21

TAIR|locus:2019579 AT1G67360 [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 118/208 (56%), Positives = 146/208 (70%)

Query:     1 METERKKQE---LRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVG 57
             METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV 
Sbjct:     1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query:    58 PVYQKFKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSE 117
             PVYQKFK VP            E S KFDEHAPP+AK+V +Q H LI  A++KAQ+ V E
Sbjct:    61 PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query:   118 AQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLV 177
             A+TGGP+AA +YAA E K  +VTNSVK W KLN Y   H M D A+P AA +S +YN LV
Sbjct:   121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query:   178 VEMTKKGYTVFGYLPLVPIDDIAKAFKQ 205
              +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:   181 TDMTNMGYSLVGYLPLVPVDDIVKAYEK 208

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2079782 AT3G05500 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 81/218 (37%), Positives = 118/218 (54%)

Query:     3 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQK 62
             T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K
Sbjct:    15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query:    63 FKGVPXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEA---- 118
             +  VP             +  + D   PP+ K+V++Q  S  + A   A+ L SE     
Sbjct:    75 YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query:   119 --QTGGPRAAVHYAAAE--SKHLLVTN-------SVKAWYKLNHYALFHTMADMAVPTAA 167
               +T    A   Y+  E  +K L           +V AW KLN   LF  +A +AVPTAA
Sbjct:   135 VVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAA 194

Query:   168 QWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 205
               S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   195 FCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2043373 AT2G47780 "AT2G47780" [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 60/199 (30%), Positives = 100/199 (50%)

Query:     7 KQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGV 66
             + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  V
Sbjct:    38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDV 97

Query:    67 PXXXXXXXXXXXXEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAA 126
             P            +     + + P L K+ +SQ  + + T  Q+   +V   ++      
Sbjct:    98 PFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALT-VATEVQRT-GVVDTTKSIARSVR 155

Query:   127 VHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYT 186
               Y  A +++   T     W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y 
Sbjct:   156 DKYEPA-AEYYAAT----LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYF 210

Query:   187 VFGYLPLVPIDDIAKAFKQ 205
                YLP++PI+ I+   +Q
Sbjct:   211 GAEYLPMIPIEKISDILEQ 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.129   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       193   0.00098  110 3  11 22  0.45    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.16u 0.10s 17.26t   Elapsed:  00:00:01
  Total cpu time:  17.16u 0.10s 17.26t   Elapsed:  00:00:01
  Start:  Mon May 20 18:55:08 2013   End:  Mon May 20 18:55:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FYF7	Y1736_ARATH	No assigned EC number	0.575	1.0	0.9583	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0008008301 SubName- Full=Putative uncharacterized protein; (229 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
pfam05755	216	pfam05755, REF, Rubber elongation factor protein (	8e-75

>gnl|CDD|218733 pfam05755, REF, Rubber elongation factor protein (REF)

 Score =  225 bits (575), Expect = 8e-75
 Identities = 89/216 (41%), Positives = 128/216 (59%), Gaps = 9/216 (4%)

Query: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60
            +   +++ L++L F+++AAI A+ C S+LY+YAK NSGPL+  V TVE AV  VVGPVY
Sbjct: 1   EKENGEEERLKYLEFVQVAAIYAVACFSTLYEYAKDNSGPLKPGVDTVEGAVKTVVGPVY 60

Query: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120
           +KF  VP +LL F+D+KVD++  + D H PPL K+ ++Q +S+ + A + A+ + SE + 
Sbjct: 61  EKFHDVPLELLKFVDRKVDDSVTELDRHVPPLVKQASAQAYSVAQKAPEVARAVASEVRR 120

Query: 121 GGPRAAVHYAA---------AESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSK 171
            G        A            + +    +V AW  LN   LF  +A + VPTAA WS+
Sbjct: 121 TGVVETAKGIAKSVYSKYLYTNYEPVAEQYAVSAWRSLNQLPLFPQVAQVVVPTAAYWSE 180

Query: 172 KYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQSE 207
           KYN  V    +KGY V  YLPLVP + IAK F +  
Sbjct: 181 KYNDAVRYTAEKGYAVASYLPLVPTERIAKVFGEEA 216

This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
PF05755	216	REF: Rubber elongation factor protein (REF); Inter	100.0

>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences

Probab=100.00  E-value=9e-100  Score=662.59  Aligned_cols=204  Identities=52%  Similarity=0.828  Sum_probs=201.0

Q ss_pred             chhhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccccccccccccccccCchhhhHHhhcccchhhh
Q 026954            3 TERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPDDLLVFLDKKVDEAS   82 (230)
Q Consensus         3 ~~~~e~~LKyL~FVq~Aai~a~v~~s~lY~yAKenSGPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~fvDrKVDesv   82 (230)
                      .+.+|++||||||||+|+||+++|||+||+|||+|||||||||+||||||||||||||+||||+|+|+|+|+|||||+++
T Consensus         3 ~~~~e~~LKyL~FVq~Aai~a~~~~s~lY~yAK~~sGPLkpgV~tVE~tVktVv~PVy~Kf~~vP~~vL~fvDrKVD~~~   82 (216)
T PF05755_consen    3 QEEEEKRLKYLGFVQAAAIQALVCFSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYDKFHDVPFEVLKFVDRKVDESV   82 (216)
T ss_pred             cccchhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHhhHhhhcchHHHHhccCcHHHHHHHhhhHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCchhhhhhHHHHHHHHHhhHHHHHHHHHHhhCChhhhHH---------HHHHhhhhHHHHHHHHHHHHhhcCc
Q 026954           83 RKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQTGGPRAAVH---------YAAAESKHLLVTNSVKAWYKLNHYA  153 (230)
Q Consensus        83 ~~lD~~vPp~vKq~s~qa~~~a~~Ap~~A~~vvse~~~~Gv~~aa~---------~~A~kyep~ae~~av~aW~kLn~lP  153 (230)
                      ++||+|+||++||+++||++++|+|||+||++++|+|++|+++||+         ++|++|||+||+|++++|++|||||
T Consensus        83 ~~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k~ly~~yEp~Ae~~av~aW~~Ln~lP  162 (216)
T PF05755_consen   83 TKLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAKDLYTKYEPVAEQYAVSAWRKLNQLP  162 (216)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHhccCC
Confidence            9999999999999999999999999999999999999999999999         8889999999999999999999999


Q ss_pred             hhhhhhhhhcchhHHHHHHHHHHHHHHhhcCceeeecccccchHHHHHHhccc
Q 026954          154 LFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQS  206 (230)
Q Consensus       154 lfpqva~~~vPtAa~~seKYN~~V~~~a~kgy~v~~YLPlVP~ekIak~f~~~  206 (230)
                      +||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus       163 ~~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~  215 (216)
T PF05755_consen  163 LFPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE  215 (216)
T ss_pred             CchhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999875

REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 29/202 (14%), Positives = 49/202 (24%), Gaps = 45/202 (22%)

Query: 1   METERKKQELRHLGFMRIAAIQAL-----VCVSSLYDYAKRNSGPLRSPVGTVESAVTAV 55
           +     + ELR L          L     V  +  ++    +   L   + T    VT  
Sbjct: 225 LRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFKQVTDF 280

Query: 56  VGPVYQKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLV 115
           +         +    +     +V     K+                        + Q+L 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKY---------------------LDCRPQDLP 319

Query: 116 SEAQTGGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNH 175
            E  T  PR  +   A   +  L T     W  +N   L   +               N 
Sbjct: 320 REVLTTNPR-RLSIIAESIRDGLATW--DNWKHVNCDKLTTII-----------ESSLNV 365

Query: 176 LVVEMTKKGYTVFGYLPL-VPI 196
           L     +K +      P    I
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00