Citrus Sinensis ID: 026955

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccEEEEEccEEcccccccccccccccccccccccEEEEccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHEEEEcccccccHHHHHHHccccHHHcccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccEEEEEEEccccEEEEEccccccccccccccccccccccccccccEEccccccccHHHHHHcccccccccc
MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAElgiskeeqdnelpsfpsfipflpplsaaNLKVYYATCFSLIAGVILFGgllapslelklgiggtsyADFIQsvhlpmqlsqvdpivasfsgGAVGVISALMIVEVNNVKQQEQKRCKyclgtgylacarcsntgslvliepvstvnggdqplsapktercsncsgsgkvmcptclctgmamasehdpridpfd
melqeihdnirsrrnkiflhmeEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVStvnggdqplsapKTERCSNCSGSGKVMCPTCLCTGMamasehdpridpfd
MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNElpsfpsfipflpplsAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
***************KIFLHMEEVRRLRIQQRI******************FPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTV********************SGKVMCPTCLCTGM**************
***Q****NIRSRRNKIFLHMEEVRRLRIQ***********************SFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMI***********KRCKYCLGTGYLACARCSNTGSLVL******************TERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDP**
MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLS************SGKVMCPTCLCTGMAMASEHDPRIDPFD
*ELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAE************PSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVN***QPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRI****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLPPLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
363807516293 uncharacterized protein LOC100780032 [Gl 1.0 0.784 0.917 1e-122
356544872301 PREDICTED: uncharacterized protein LOC10 1.0 0.764 0.913 1e-122
449451844326 PREDICTED: uncharacterized protein LOC10 1.0 0.705 0.908 1e-122
225454961312 PREDICTED: uncharacterized protein LOC10 1.0 0.737 0.9 1e-121
255539933313 conserved hypothetical protein [Ricinus 1.0 0.734 0.891 1e-120
297744966270 unnamed protein product [Vitis vinifera] 1.0 0.851 0.9 1e-120
224114611316 predicted protein [Populus trichocarpa] 1.0 0.727 0.886 1e-120
356458002313 Or protein [Ipomoea batatas] 1.0 0.734 0.891 1e-119
15240312307 uncharacterized protein [Arabidopsis tha 1.0 0.749 0.891 1e-119
297793723307 hypothetical protein ARALYDRAFT_496333 [ 1.0 0.749 0.895 1e-119
>gi|363807516|ref|NP_001241887.1| uncharacterized protein LOC100780032 [Glycine max] gi|255639096|gb|ACU19848.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/230 (91%), Positives = 223/230 (96%)

Query: 1   MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNELPSFPSFIPFLP 60
           MELQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGI  EEQ+NELP+FPSFIPFLP
Sbjct: 64  MELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGILSEEQENELPNFPSFIPFLP 123

Query: 61  PLSAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVD 120
           PL++ANLK YYATCFSLIAG+ILFGGLLAPSLELKLG+GGTSYADFI+SVHLPMQLSQVD
Sbjct: 124 PLTSANLKQYYATCFSLIAGIILFGGLLAPSLELKLGLGGTSYADFIESVHLPMQLSQVD 183

Query: 121 PIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVS 180
           PIVASFSGGAVGVISALM+VE+NNVKQQ QKRCKYCLGTGYLACARCS+TG+LVLIEPVS
Sbjct: 184 PIVASFSGGAVGVISALMVVEINNVKQQGQKRCKYCLGTGYLACARCSSTGALVLIEPVS 243

Query: 181 TVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 230
           TV GGD+PLS PKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD
Sbjct: 244 TVKGGDKPLSPPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356544872|ref|XP_003540871.1| PREDICTED: uncharacterized protein LOC100780118 [Glycine max] Back     alignment and taxonomy information
>gi|449451844|ref|XP_004143670.1| PREDICTED: uncharacterized protein LOC101219412 [Cucumis sativus] gi|449488619|ref|XP_004158115.1| PREDICTED: uncharacterized protein LOC101232024 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225454961|ref|XP_002280630.1| PREDICTED: uncharacterized protein LOC100266582 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255539933|ref|XP_002511031.1| conserved hypothetical protein [Ricinus communis] gi|223550146|gb|EEF51633.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|297744966|emb|CBI38558.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114611|ref|XP_002332323.1| predicted protein [Populus trichocarpa] gi|222832570|gb|EEE71047.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356458002|gb|AET07429.1| Or protein [Ipomoea batatas] Back     alignment and taxonomy information
>gi|15240312|ref|NP_200975.1| uncharacterized protein [Arabidopsis thaliana] gi|42573758|ref|NP_974975.1| uncharacterized protein [Arabidopsis thaliana] gi|9758482|dbj|BAB09011.1| unnamed protein product [Arabidopsis thaliana] gi|17529230|gb|AAL38842.1| unknown protein [Arabidopsis thaliana] gi|20453124|gb|AAM19804.1| AT5g61670/k11j9_190 [Arabidopsis thaliana] gi|21436109|gb|AAM51301.1| unknown protein [Arabidopsis thaliana] gi|21536802|gb|AAM61134.1| unknown [Arabidopsis thaliana] gi|23506191|gb|AAN31107.1| At5g61670/k11j9_190 [Arabidopsis thaliana] gi|332010120|gb|AED97503.1| uncharacterized protein [Arabidopsis thaliana] gi|332010121|gb|AED97504.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793723|ref|XP_002864746.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata] gi|297310581|gb|EFH41005.1| hypothetical protein ARALYDRAFT_496333 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
TAIR|locus:2151556307 AT5G61670 "AT5G61670" [Arabido 1.0 0.749 0.834 3.4e-100
TAIR|locus:2152845315 AT5G06130 [Arabidopsis thalian 1.0 0.730 0.636 5e-76
TAIR|locus:2005585154 LQY1 "LOW QUANTUM YIELD OF PHO 0.426 0.636 0.295 3.8e-06
TAIR|locus:2151556 AT5G61670 "AT5G61670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
 Identities = 192/230 (83%), Positives = 204/230 (88%)

Query:     1 MELQEIHDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGISKEEQDNEXXXXXXXXXXXX 60
             M+LQEI DNIRSRRNKIFLHMEEVRRLRIQQRIKN ELGI  EEQ++E            
Sbjct:    78 MQLQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINEEQEHELPNFPSFIPFLP 137

Query:    61 XXXAANLKVYYATCFSLIAGVILFGGLLAPSLELKLGIGGTSYADFIQSVHLPMQLSQVD 120
                AANLKVYYATCFSLIAG+ILFGGLLAP+LELKLGIGGTSYADFIQS+HLPMQLSQVD
Sbjct:   138 PLTAANLKVYYATCFSLIAGIILFGGLLAPTLELKLGIGGTSYADFIQSLHLPMQLSQVD 197

Query:   121 PIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVS 180
             PIVASFSGGAVGVISALM+VEVNNVKQQE KRCKYCLGTGYLACARCS+TG+LVL EPVS
Sbjct:   198 PIVASFSGGAVGVISALMVVEVNNVKQQEHKRCKYCLGTGYLACARCSSTGALVLTEPVS 257

Query:   181 TVNGGDQPLSAPKTERCSNCSGSGKVMCPTCLCTGMAMASEHDPRIDPFD 230
              + GG+  LS PKTERCSNCSG+GKVMCPTCLCTGMAMASEHDPRIDPFD
Sbjct:   258 AIAGGNHSLSPPKTERCSNCSGAGKVMCPTCLCTGMAMASEHDPRIDPFD 307
GO:0009536 "plastid" evidence=ISS
GO:0009661 "chromoplast organization" evidence=ISS
GO:0016120 "carotene biosynthetic process" evidence=ISS
TAIR|locus:2152845 AT5G06130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005585 LQY1 "LOW QUANTUM YIELD OF PHOTOSYSTEM II 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014167001
SubName- Full=Chromosome chr16 scaffold_10, whole genome shotgun sequence; (270 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
PLN03165111 PLN03165, PLN03165, chaperone protein dnaJ-related 3e-05
PRK14298 377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 0.003
>gnl|CDD|178709 PLN03165, PLN03165, chaperone protein dnaJ-related; Provisional Back     alignment and domain information 
 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 10/74 (13%)

Query: 143 NNVKQQEQKRCKYCLGTGYLACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSG 202
           N  K++  + C  C GTG   C  C  +G++ +      + GG++ +S     +C NC G
Sbjct: 34  NAAKRENTQPCFPCSGTGAQVCRFCVGSGNVTVE-----LGGGEKEVS-----KCINCDG 83

Query: 203 SGKVMCPTCLCTGM 216
           +G + C TC  +G+
Sbjct: 84  AGSLTCTTCQGSGI 97

Length = 111
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 99.3
PLN03165111 chaperone protein dnaJ-related; Provisional 99.16
PRK14282 369 chaperone protein DnaJ; Provisional 99.11
PRK14298 377 chaperone protein DnaJ; Provisional 99.08
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 99.04
PRK14276 380 chaperone protein DnaJ; Provisional 99.04
PRK14278 378 chaperone protein DnaJ; Provisional 99.04
PRK14296 372 chaperone protein DnaJ; Provisional 99.04
PRK14280 376 chaperone protein DnaJ; Provisional 99.02
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 99.02
PRK14277 386 chaperone protein DnaJ; Provisional 99.02
PRK14286 372 chaperone protein DnaJ; Provisional 99.01
PRK14279 392 chaperone protein DnaJ; Provisional 99.01
PRK14281 397 chaperone protein DnaJ; Provisional 99.0
PRK14297 380 chaperone protein DnaJ; Provisional 98.98
PRK10767 371 chaperone protein DnaJ; Provisional 98.97
PRK14301 373 chaperone protein DnaJ; Provisional 98.95
PRK14293 374 chaperone protein DnaJ; Provisional 98.95
PRK14284 391 chaperone protein DnaJ; Provisional 98.95
PRK14288 369 chaperone protein DnaJ; Provisional 98.94
PRK14300 372 chaperone protein DnaJ; Provisional 98.94
PRK14287 371 chaperone protein DnaJ; Provisional 98.94
PRK14295 389 chaperone protein DnaJ; Provisional 98.94
PRK14285 365 chaperone protein DnaJ; Provisional 98.93
PRK14289 386 chaperone protein DnaJ; Provisional 98.93
PTZ00037 421 DnaJ_C chaperone protein; Provisional 98.91
PRK14294 366 chaperone protein DnaJ; Provisional 98.91
PRK14290 365 chaperone protein DnaJ; Provisional 98.89
PRK14291 382 chaperone protein DnaJ; Provisional 98.87
PRK14283 378 chaperone protein DnaJ; Provisional 98.86
PRK14292 371 chaperone protein DnaJ; Provisional 98.86
KOG2813 406 consensus Predicted molecular chaperone, contains 98.46
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 98.44
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 98.28
KOG2813 406 consensus Predicted molecular chaperone, contains 98.11
PF0068466 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 97.79
COG1107 715 Archaea-specific RecJ-like exonuclease, contains D 97.69
COG0484 371 DnaJ DnaJ-class molecular chaperone with C-termina 97.65
PRK14298 377 chaperone protein DnaJ; Provisional 97.08
PRK14279 392 chaperone protein DnaJ; Provisional 97.06
PLN03165111 chaperone protein dnaJ-related; Provisional 96.98
PRK14285 365 chaperone protein DnaJ; Provisional 96.97
PRK14280 376 chaperone protein DnaJ; Provisional 96.94
PRK14286 372 chaperone protein DnaJ; Provisional 96.92
PRK14300 372 chaperone protein DnaJ; Provisional 96.92
PRK10767 371 chaperone protein DnaJ; Provisional 96.92
PRK14296 372 chaperone protein DnaJ; Provisional 96.91
PRK14278 378 chaperone protein DnaJ; Provisional 96.9
PRK14284 391 chaperone protein DnaJ; Provisional 96.89
PRK14301 373 chaperone protein DnaJ; Provisional 96.79
PRK14282 369 chaperone protein DnaJ; Provisional 96.77
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 96.77
PRK14295 389 chaperone protein DnaJ; Provisional 96.77
PRK14297 380 chaperone protein DnaJ; Provisional 96.76
TIGR02349 354 DnaJ_bact chaperone protein DnaJ. This model repre 96.76
PRK14288 369 chaperone protein DnaJ; Provisional 96.65
KOG2824281 consensus Glutaredoxin-related protein [Posttransl 96.64
PTZ00037 421 DnaJ_C chaperone protein; Provisional 96.62
PRK14289 386 chaperone protein DnaJ; Provisional 96.62
PRK14287 371 chaperone protein DnaJ; Provisional 96.56
PRK14290 365 chaperone protein DnaJ; Provisional 96.56
PRK14277 386 chaperone protein DnaJ; Provisional 96.54
PRK14294 366 chaperone protein DnaJ; Provisional 96.53
PRK14281 397 chaperone protein DnaJ; Provisional 96.47
PRK14291 382 chaperone protein DnaJ; Provisional 96.47
PRK14293 374 chaperone protein DnaJ; Provisional 96.42
PRK14292 371 chaperone protein DnaJ; Provisional 96.22
PRK14276 380 chaperone protein DnaJ; Provisional 96.1
PRK14283 378 chaperone protein DnaJ; Provisional 96.05
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 95.56
TIGR02642186 phage_xxxx uncharacterized phage protein. This unc 95.52
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 94.46
PRK03564309 formate dehydrogenase accessory protein FdhE; Prov 89.33
cd03031147 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d 86.61
PF04216290 FdhE: Protein involved in formate dehydrogenase fo 86.47
COG1198 730 PriA Primosomal protein N' (replication factor Y) 84.7
TIGR01562305 FdhE formate dehydrogenase accessory protein FdhE. 84.59
KOG0712 337 consensus Molecular chaperone (DnaJ superfamily) [ 84.22
PF07092 238 DUF1356: Protein of unknown function (DUF1356); In 83.72
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=99.30  E-value=2.2e-12  Score=121.37  Aligned_cols=69  Identities=23%  Similarity=0.630  Sum_probs=57.7

Q ss_pred             cceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCC
Q 026955          143 NNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLC  213 (230)
Q Consensus       143 n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~G  213 (230)
                      .+++..+...|+.|+|+|+      .+|+.|+|+|++...+.  +    |   .++.+++|++|+|+|++   +|++|+|
T Consensus       135 ~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~--~----g---~~~~~~~C~~C~G~G~~i~~pC~~C~G  205 (371)
T COG0484         135 KEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQR--T----G---FFSFQQTCPTCNGTGKIIKDPCGKCKG  205 (371)
T ss_pred             eeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEe--e----e---EEEEEEECCCCccceeECCCCCCCCCC
Confidence            3567888999999999986      69999999999976541  1    2   35678999999999998   8999999


Q ss_pred             eeEEece
Q 026955          214 TGMAMAS  220 (230)
Q Consensus       214 tG~~~~~  220 (230)
                      .|.+.+.
T Consensus       206 ~G~v~~~  212 (371)
T COG0484         206 KGRVKKK  212 (371)
T ss_pred             CCeEeee
Confidence            9997654

>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation Back     alignment and domain information
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PLN03165 chaperone protein dnaJ-related; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>TIGR02642 phage_xxxx uncharacterized phage protein Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional Back     alignment and domain information
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs Back     alignment and domain information
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex [] Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 99.41
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 99.18
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 99.15
1exk_A79 DNAJ protein; extended beta-hairpin, CXXCXGXG, zin 97.93
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 97.72
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 97.45
1nlt_A 248 Protein YDJ1, mitochondrial protein import protein 97.19
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 97.09
3lcz_A53 YCZA, inhibitor of trap, regulated by T-box (Trp) 96.59
2bx9_A53 Anti-trap, AT, tryptophan RNA-binding attenuator p 96.56
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.41  E-value=1.7e-13  Score=105.58  Aligned_cols=85  Identities=22%  Similarity=0.432  Sum_probs=68.1

Q ss_pred             eeeccccccccCCeeeeeecceehhhhhhhhhhccceeecceeeccccccccc------ccCCCCccccEEEeeeccccc
Q 026955          109 SVHLPMQLSQVDPIVASFSGGAVGVISALMIVEVNNVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTV  182 (230)
Q Consensus       109 ~~~lp~qls~~d~I~asf~Gg~vGv~s~l~vve~n~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~  182 (230)
                      +.++++.+++.|    +|+|..+            +++..+...|+.|+|+|.      ..|+.|+|+|++....     
T Consensus         3 ~~~~~l~vslee----~~~G~~~------------~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-----   61 (104)
T 2ctt_A            3 SGSSGMELTFNQ----AAKGVNK------------EFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-----   61 (104)
T ss_dssp             CCCCCCCCCCSS----CCSSSCT------------TCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-----
T ss_pred             ceEEEEEEEHHH----HcCCCEE------------EEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-----
Confidence            356777888888    8888855            455667889999999994      6899999999986532     


Q ss_pred             cCCCCCCCCCCcccCCCCCcCcee---eCCCCCCeeEEece
Q 026955          183 NGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCTGMAMAS  220 (230)
Q Consensus       183 ~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~GtG~~~~~  220 (230)
                         |   .++...+|+.|+|+|++   +|++|+|+|++.++
T Consensus        62 ---G---~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~~~   96 (104)
T 2ctt_A           62 ---G---PFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQK   96 (104)
T ss_dssp             ---T---TEEEEEECSSSSSSSEECSSCCSSSSSCSEECCC
T ss_pred             ---C---CEEEEEECCcCCCcceECCCcCCCCCCeeEEEEE
Confidence               2   23457899999999998   89999999998643
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A Back     alignment and structure
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 99.25
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 99.13
d1exka_79 Cysteine-rich domain of the chaperone protein DnaJ 97.76
d1nlta374 Mitochondrial protein import protein mas5 (Hsp40, 97.67
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 96.91
d1m1qa_90 Flavocytochrome c3 (respiratory fumarate reductase 85.51
d2fiya1290 FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId 83.55
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.7e-12  Score=94.25  Aligned_cols=66  Identities=23%  Similarity=0.634  Sum_probs=54.0

Q ss_pred             ceeecceeeccccccccc------ccCCCCccccEEEeeeccccccCCCCCCCCCCcccCCCCCcCcee---eCCCCCCe
Q 026955          144 NVKQQEQKRCKYCLGTGY------LACARCSNTGSLVLIEPVSTVNGGDQPLSAPKTERCSNCSGSGKV---MCPTCLCT  214 (230)
Q Consensus       144 ~vk~~~~k~C~~C~GtG~------~~C~~C~GSG~v~~~~~~~~~~g~G~~~~~~~~~~Cp~C~G~Gkv---~C~tC~Gt  214 (230)
                      +++.+....|+.|+|+|+      ..|+.|+|+|++....        |   .++..++|++|+|+|++   +|++|.|+
T Consensus         5 ~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~--------g---~~~~~~~C~~C~G~G~~i~~~C~~C~G~   73 (79)
T d1exka_           5 EIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ--------G---FFAVQQTCPHCQGRGTLIKDPCNKCHGH   73 (79)
T ss_dssp             SCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEE--------T---TEEEEEECTTTTTSSEECSSBCGGGTTS
T ss_pred             EEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEec--------c---cceeeEECcccCcceeECCCCCCCCCCc
Confidence            456678889999999985      5799999999886432        2   23456799999999998   89999999


Q ss_pred             eEEece
Q 026955          215 GMAMAS  220 (230)
Q Consensus       215 G~~~~~  220 (230)
                      |.+.++
T Consensus        74 G~v~kt   79 (79)
T d1exka_          74 GRVERS   79 (79)
T ss_dssp             SEEECC
T ss_pred             eEeecC
Confidence            998764
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Back     information, alignment and structure
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure