Citrus Sinensis ID: 026990

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHcccccccEEEEEccEEccccHHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHcccccccEEEEEccEccccccHHHHHHHHHHcccccEEEEEEEcccEEEEEEEEcccccccccccEEEEc
Coil and Loop (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRlsqsngpglsgnlvdsegfprtdidiHLVRSERRRLAELRNDHKEITEKINENIQLLHsarlvpvptsakdsgddggsnnqnpsilgtvqsasfnnavprnspaamdvdviirrpfavideitdaspaaedglqlGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGglinlavtprpwqgrgllgchfrml
Flexible Loop (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLsgnlvdsegfprtdidihlvrsERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAegrknqgnaVPVVIMRQGGLInlavtprpwqgrgllgchfrml
Low Complexity Region (SEG)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered region (IsUnstruct)
****************************************************DIDIHLV***********************NIQLLH**********************************************AMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF***
Disordered Region (DISOPRED)
**********MSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAK***************************************VIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered Region (DISEMBL)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPV*************NNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Disordered Region (DISPRO)
**GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLV************************************************IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	230	2.2.26 [Sep-21-2011]
Q9WTV5	222	26S proteasome non-ATPase	yes	no	0.852	0.882	0.289	2e-23
Q9CR00	222	26S proteasome non-ATPase	yes	no	0.852	0.882	0.280	1e-22
O00233	223	26S proteasome non-ATPase	yes	no	0.830	0.856	0.281	9e-22
Q3SZ19	221	26S proteasome non-ATPase	yes	no	0.847	0.882	0.271	3e-21
Q552Y8	262	Probable 26S proteasome n	yes	no	0.917	0.805	0.273	2e-19
O94393	213	Probable 26S proteasome r	yes	no	0.743	0.802	0.279	6e-16
P40555	220	Probable 26S proteasome r	yes	no	0.804	0.840	0.268	6e-15
Q10920	197	Probable 26S proteasome n	yes	no	0.778	0.908	0.25	8e-14

>sp|Q9WTV5|PSMD9_RAT 26S proteasome non-ATPase regulatory subunit 9 OS=Rattus norvegicus GN=Psmd9 PE=1 SV=1

 Score =  109 bits (272), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 116/221 (52%), Gaps = 25/221 (11%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           ++I  LM ++  +EA + A  D L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct: 21  SDIQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query: 68  ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
            L+NDHK + +++ E +  LH          A+D              +   +  + N  
Sbjct: 81  CLQNDHKALMKQVEEALHQLH----------ARDKEKQARD-------MAEAREEAMNRR 123

Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
           +  +SPA       + + FA ++ I+  SPA+  GLQ+ D++++FG+V   +   L+ + 
Sbjct: 124 LASDSPA-------LPKAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSLQNVG 176

Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
              + ++G  + V+++R+G    L +TP  W G+GLLGC+ 
Sbjct: 177 TVVQHSEGKPLNVMVIRRGEKHQLRLTPTRWAGKGLLGCNI 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.
Rattus norvegicus (taxid: 10116)

>sp|Q9CR00|PSMD9_MOUSE 26S proteasome non-ATPase regulatory subunit 9 OS=Mus musculus GN=Psmd9 PE=1 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 115/221 (52%), Gaps = 25/221 (11%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           ++I  LM ++  +EA++ A  D L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct: 21  SDIQDLMRRKEEIEAEIKANYDVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNII 80

Query: 68  ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
            L+NDHK + +++ E +  LH          A+D              +   +  + N  
Sbjct: 81  CLQNDHKALMKQVEEALHQLH----------ARDKEKQARD-------MAEAREEAMNRR 123

Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
           +  NSP       ++ + FA ++ I+  SPA+  GLQ+ D++++FG+V   +   ++ + 
Sbjct: 124 LASNSP-------VLPQAFARVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQSVQNVG 176

Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
              + ++G  + V ++R+G    L + P  W G+GLLGC+ 
Sbjct: 177 TVVQHSEGKPLNVTVIRRGEKHQLRLIPTRWAGKGLLGCNI 217

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Mus musculus (taxid: 10090)

>sp|O00233|PSMD9_HUMAN 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 36/227 (15%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  + 
Sbjct: 21  SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80

Query: 68  ELRNDHKEITEKINENIQLLHS------ARLVPVPTSAKDSGDDGGSNNQNPSILGTVQS 121
            L+NDHK + +++ E +  LH+      AR +        S   G S +Q P        
Sbjct: 81  CLQNDHKAVMKQVEEALHQLHARDKEKQARDMAEAHKEAMSRKLGQSESQGPP------- 133

Query: 122 ASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-N 180
                                 R FA ++ I+  SPA+  GLQ+ D++++FG+V   +  
Sbjct: 134 ----------------------RAFAKVNSISPGSPASIAGLQVDDEIVEFGSVNTQNFQ 171

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
            L  + +  + ++G  + V ++R+G    L + P  W G+GLLGC+ 
Sbjct: 172 SLHNIGSVVQHSEGKPLNVTVIRRGEKHQLRLVPTRWAGKGLLGCNI 218

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Homo sapiens (taxid: 9606)

>sp|Q3SZ19|PSMD9_BOVIN 26S proteasome non-ATPase regulatory subunit 9 OS=Bos taurus GN=PSMD9 PE=1 SV=1

 Score =  101 bits (252), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 26/221 (11%)

Query: 8   AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
           +++  L+ ++  +EA + A  + L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct: 21  SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80

Query: 68  ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
            L+NDHK + +++ + +  LH+           ++  +  S +Q+  +            
Sbjct: 81  CLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQGL------------ 128

Query: 128 VPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLA 186
               SPA         + FA ++ I+  SPA+  GLQ+ D++L+FG+V   +   L+ + 
Sbjct: 129 ----SPA---------QAFAKVNSISPGSPASIAGLQVDDEILEFGSVNTQNFQSLQNIG 175

Query: 187 AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
           +  + ++G  + V +MR+G    L + P  W G+GLLGC+ 
Sbjct: 176 SVVQHSEGKPLNVTVMRRGEKHQLRLVPTRWAGKGLLGCNI 216

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the PA700/19S regulatory complex (RC). During the base subcomplex assembly is part of an intermediate PSMD9:PSMC6:PSMC3 module, also known as modulator trimer complex; PSMD9 is released during the further base assembly process.

Bos taurus (taxid: 9913)

>sp|Q552Y8|PSMD9_DICDI Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Dictyostelium discoideum GN=psmD9 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 122/238 (51%), Gaps = 27/238 (11%)

Query: 10  IMSLMEKRSALEADMNAIIDRLSQSNGP--GLSGNLVDSEGFPRTDIDIHL-VRSERRRL 66
           I +LM  R  LE ++ ++++ L   +G   GL G+  DSEG+P   +++ + V+  R R+
Sbjct: 25  IKTLMVTRGDLEKELESLMNFLKSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRI 84

Query: 67  AELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNN 126
           A ++ND+K++ + I  +++ LH +     PT+   S      NN   +      +     
Sbjct: 85  AHIQNDYKQVMKDIEFHLEKLHKS-----PTNKNQSSSTFSINNTTSTSNNNNNNNEDEM 139

Query: 127 AVPR-------NSPAAMDVDV-IIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV--- 175
            + +         P  ++V+V  +  PF  ID +++ SP+ +  L+ GD + +FGTV   
Sbjct: 140 KIDKPLTVETETKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPF 199

Query: 176 ----EAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 225
               + GDNL    L+ +A   R ++  A+ + + R   +I+ ++ PR W G+GL+GC
Sbjct: 200 FEERQVGDNLNSNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|O94393|PSMD9_SCHPO Probable 26S proteasome regulatory subunit p27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nas2 PE=3 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 95/193 (49%), Gaps = 22/193 (11%)

Query: 43  LVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDS 102
           L+  +GFPR+DID+  +R+ R  +  LRNDH+E+ ++I + ++ + S         +  +
Sbjct: 36  LLTEDGFPRSDIDVPSIRTARHEIITLRNDHRELEDQIKKVLEKVFSG----FSKESLAA 91

Query: 103 GDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIR-RPFAVIDEITDASPAAED 161
            D+     +   +     + + N+ + R+        ++ R +PF V+D +   SPA E 
Sbjct: 92  NDETKLAQEADPLNFNAANYNMNDIISRSK-------ILGRVKPFCVVDSVAVESPAQEA 144

Query: 162 GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR------QGGLINLAVTPR 215
           GL +GD+++    V +    L  L      N    + V+++R         L+ L +TP 
Sbjct: 145 GLCIGDELVHVQNVTS----LSELPTFISNNVNKTLDVLLIRGYSADGSTNLVELKLTPH 200

Query: 216 PWQGRGLLGCHFR 228
            WQG GLLGCH R
Sbjct: 201 KWQGPGLLGCHLR 213

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P40555|PSMD9_YEAST Probable 26S proteasome regulatory subunit p27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAS2 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 35/220 (15%)

Query: 13  LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRND 72
           LM  ++ +E  + A    L Q  G G+   LV  +G+PR+D+D+  V   R+ +  L+ND
Sbjct: 34  LMVLKTDIETQLEAYFSVLEQQ-GIGMDSALVTPDGYPRSDVDVLQVTMIRKNVNMLKND 92

Query: 73  HKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNS 132
                  +N  +Q  H             S  D   NN + +I  T+             
Sbjct: 93  -------LNHLLQRSHVLLNQHFDNMNVKSNQDARRNNDDQAIQYTI------------- 132

Query: 133 PAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN-LLERLAAEGRK 191
                       PFA I E+   SP+ +  +++ D+++  G V A ++  L+ +     K
Sbjct: 133 ------------PFAFISEVVPGSPSDKADIKVDDKLISIGNVHAANHSKLQNIQMVVMK 180

Query: 192 NQGNAVPVVIMRQGGLINLAVTP-RPWQGRGLLGCHFRML 230
           N+   +PV+++R+G ++  ++TP R W GRGLLGC  + L
Sbjct: 181 NEDRPLPVLLLREGQILKTSLTPSRNWNGRGLLGCRIQEL 220

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC). During the base subcomplex assembly is part of a NAS2:RPT4:RPT5 module; NAS2 is released during the further base assembly process.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10920|PSMD9_CAEEL Probable 26S proteasome non-ATPase regulatory subunit 9 OS=Caenorhabditis elegans GN=C44B7.1 PE=1 SV=2

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 37/216 (17%)

Query: 13  LMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRND 72
           L+++R  L+  +  ++  L ++N   +   L+D+EG+P   ID++ VR  R  L  LRND
Sbjct: 10  LLQQRDELDGKIKELMLVL-ETNNSTMDSPLLDAEGYPLNTIDVYAVRHARHDLICLRND 68

Query: 73  HKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNS 132
              +TEKI   ++                        N+N  + G   + S    V R S
Sbjct: 69  RAALTEKIVVEME------------------------NENKEVSGQT-ATSEEKPVHRTS 103

Query: 133 PAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRK 191
                       PF  I  + + SPA   G +  D ++++G +  G+ N ++ +A   ++
Sbjct: 104 ----------NEPFVKISSVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQ 153

Query: 192 NQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHF 227
           ++   + V ++R+   + L + P+ W G GLLGC+ 
Sbjct: 154 SEDKIIRVTVIRENRPVRLEICPKKWSGPGLLGCNI 189

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the base subcomplex of the 19S regulatory complex (RC).

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
359484837	230	PREDICTED: 26S proteasome non-ATPase reg	1.0	1.0	0.678	2e-86
356516992	230	PREDICTED: probable 26S proteasome regul	1.0	1.0	0.695	1e-85
388512875	228	unknown [Lotus japonicus]	0.991	1.0	0.647	2e-82
356516994	231	PREDICTED: probable 26S proteasome regul	1.0	0.995	0.679	3e-82
225445869	216	PREDICTED: 26S proteasome non-ATPase reg	0.939	1.0	0.660	3e-82
356516996	212	PREDICTED: probable 26S proteasome regul	0.921	1.0	0.669	2e-80
356516986	229	PREDICTED: probable 26S proteasome regul	0.986	0.991	0.668	3e-79
356516984	222	PREDICTED: probable 26S proteasome regul	0.965	1.0	0.660	8e-79
118483003	216	unknown [Populus trichocarpa]	0.926	0.986	0.665	1e-78
359484839	210	PREDICTED: 26S proteasome non-ATPase reg	0.913	1.0	0.634	3e-78

>gi|359484837|ref|XP_003633171.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 2 [Vitis vinifera] gi|297743643|emb|CBI36526.3| unnamed protein product [Vitis vinifera]

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 156/230 (67%), Positives = 188/230 (81%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ER+RLAELRND+K+ITEKINENIQLLHSARL P  +  KD  +D GSNNQ  S    V 
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARLAPRSSLHKDLDNDEGSNNQGSSTATAVP 120

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           SA+ +N +PR++  AMDVD  +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDN
Sbjct: 121 SAASHNVLPRDTLTAMDVDATVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDN 180

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL RLA+E + N G+A+PV++MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 181 LLPRLASEAQTNHGHAIPVIVMRQGALINLTMTPRTWQGRGLLGCHFQML 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516992|ref|XP_003527174.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 1 [Glycine max]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 160/230 (69%), Positives = 188/230 (81%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ERRRLAELR+DH E+TEKIN NIQ+LHSARL       K+SG+D GS+ Q  S + TV 
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSGNDDGSDTQISSNMDTVA 120

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDN
Sbjct: 121 STPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDN 180

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL+RL++E + N G AVPVVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 181 LLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512875|gb|AFK44499.1| unknown [Lotus japonicus]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/230 (64%), Positives = 185/230 (80%), Gaps = 2/230 (0%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KR++LEA+MNAII  L+Q   PGLSGNL+DSEGFPR+DIDI  VR
Sbjct: 1   MVATNVKAETMSLMDKRTSLEAEMNAIITHLTQPGAPGLSGNLIDSEGFPRSDIDIPAVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ERRRL ELRNDHKE+TEKIN+NIQ+LHSARL   P   K+SG+D GS+ Q  + + T+ 
Sbjct: 61  AERRRLEELRNDHKEVTEKINQNIQILHSARLGKSP--FKNSGNDEGSDTQTSTAVDTLA 118

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           S    N + R +P +MDVDV++ RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGD+
Sbjct: 119 STPGQNVLLRQNPNSMDVDVLVSRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDD 178

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL+RL++E + N    +PVVI RQG ++NL +TPR WQGRGLLGCHFR+L
Sbjct: 179 LLQRLSSESQSNLDRPIPVVITRQGTVVNLTITPRTWQGRGLLGCHFRIL 228

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516994|ref|XP_003527175.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 2 [Glycine max]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 157/231 (67%), Positives = 184/231 (79%), Gaps = 1/231 (0%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGS-NNQNPSILGTV 119
           +ERRRLAELR+DH E+TEKIN NIQ+LHSARL       K+SG    +   Q  S + TV
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARLGNRSLPFKNSGTAKSNLYTQISSNMDTV 120

Query: 120 QSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD 179
            S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGD
Sbjct: 121 ASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGD 180

Query: 180 NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           NLL+RL++E + N G AVPVVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 181 NLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445869|ref|XP_002278908.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 1 [Vitis vinifera]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/230 (66%), Positives = 182/230 (79%), Gaps = 14/230 (6%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ER+RLAELRND+K+ITEKINENIQLLHSARL              GSNNQ  S    V 
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARL--------------GSNNQGSSTATAVP 106

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           SA+ +N +PR++  AMDVD  +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDN
Sbjct: 107 SAASHNVLPRDTLTAMDVDATVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDN 166

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL RLA+E + N G+A+PV++MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 167 LLPRLASEAQTNHGHAIPVIVMRQGALINLTMTPRTWQGRGLLGCHFQML 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516996|ref|XP_003527176.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 3 [Glycine max]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/230 (66%), Positives = 179/230 (77%), Gaps = 18/230 (7%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ERRRLAELR+DH E+TEKIN NIQ+LHSARL                   N S + TV 
Sbjct: 61  AERRRLAELRSDHNEVTEKINLNIQILHSARL------------------GNRSNMDTVA 102

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDN
Sbjct: 103 STPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDN 162

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL+RL++E + N G AVPVVIMRQG +INL +TPRPWQGRGLLGCHFR+L
Sbjct: 163 LLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQGRGLLGCHFRIL 212

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516986|ref|XP_003527171.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 2 [Glycine max]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 155/232 (66%), Positives = 183/232 (78%), Gaps = 5/232 (2%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSE FP +DID+ +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSN--NQNPSILGT 118
           +ERRRLAELR+DH E+T+KIN NIQ+LHSARL     S K+SG    SN   Q  S + T
Sbjct: 61  AERRRLAELRSDHNEVTDKINLNIQILHSARLGN--RSFKNSGT-AKSNLYTQVSSNMDT 117

Query: 119 VQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAG 178
           V S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAG
Sbjct: 118 VASTPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAG 177

Query: 179 DNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           DNLL+RL++E + N G AVPVVIMRQG +INL +TPRPWQ RGLLGCHFR+L
Sbjct: 178 DNLLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516984|ref|XP_003527170.1| PREDICTED: probable 26S proteasome regulatory subunit p27-like isoform 1 [Glycine max]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 152/230 (66%), Positives = 180/230 (78%), Gaps = 8/230 (3%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MV TN+KAE MSLM+KRSALEA+MN+II RLSQ   PGLSGNLVDSE FP +DID+ +VR
Sbjct: 1   MVATNVKAETMSLMDKRSALEAEMNSIIARLSQPGAPGLSGNLVDSEDFPHSDIDVPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ERRRLAELR+DH E+T+KIN NIQ+LHSARL     S K+S     SN      + TV 
Sbjct: 61  AERRRLAELRSDHNEVTDKINLNIQILHSARLGN--RSFKNSDTQVSSN------MDTVA 112

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
           S    N +   SP +MDV+V+I RPFA++DEI DASPA EDGLQLGDQ+LKFG VEAGDN
Sbjct: 113 STPSQNVLLIRSPNSMDVNVLISRPFAMVDEIADASPAVEDGLQLGDQILKFGNVEAGDN 172

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL+RL++E + N G AVPVVIMRQG +INL +TPRPWQ RGLLGCHFR+L
Sbjct: 173 LLQRLSSEAQSNLGCAVPVVIMRQGTVINLTITPRPWQARGLLGCHFRIL 222

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483003|gb|ABK93413.1| unknown [Populus trichocarpa]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/233 (66%), Positives = 183/233 (78%), Gaps = 20/233 (8%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M LMEKRSALE +MN IIDRL Q  GPGLSGNLVDSEGFPR+DIDI +VR
Sbjct: 1   MVGANLKAETMKLMEKRSALETEMNVIIDRLCQPGGPGLSGNLVDSEGFPRSDIDIPVVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILG-TV 119
           +ER RLAELRNDHKEITEKINENIQ+LHSARL     + KD            S++G  V
Sbjct: 61  AERHRLAELRNDHKEITEKINENIQVLHSARL-----ATKD------------SVVGNAV 103

Query: 120 QSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVE--A 177
            SA+ +N V R+SP++MDVD++   PFAV+ EI DASP AEDGLQLGDQ++KFGTVE   
Sbjct: 104 PSATSHNVVLRDSPSSMDVDMMASIPFAVVYEIADASPTAEDGLQLGDQLVKFGTVEYQV 163

Query: 178 GDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           G+NLL++LA+E + NQG+AVPV++MRQG  INL+VTPR W GRGLLGC FR+L
Sbjct: 164 GENLLQKLASETQANQGHAVPVIVMRQGAPINLSVTPRVWPGRGLLGCSFRIL 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484839|ref|XP_003633172.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like isoform 3 [Vitis vinifera]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 146/230 (63%), Positives = 177/230 (76%), Gaps = 20/230 (8%)

Query: 1   MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
           MVG NLKAE M+LM++R+ LEA MNAII RL Q  GPG+SG+LVDSEGFPR+DIDI  VR
Sbjct: 1   MVGANLKAEAMALMDRRTELEAQMNAIIQRLCQPGGPGISGSLVDSEGFPRSDIDIPTVR 60

Query: 61  SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQ 120
           +ER+RLAELRND+K+ITEKINENIQLLHSARL P  +  KD                   
Sbjct: 61  AERQRLAELRNDYKDITEKINENIQLLHSARLAPRSSLHKD------------------- 101

Query: 121 SASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN 180
             + +N +PR++  AMDVD  +  PFAV+DEI +ASPAAEDGLQLGD+++KFG VEAGDN
Sbjct: 102 -LASHNVLPRDTLTAMDVDATVSLPFAVVDEIAEASPAAEDGLQLGDRIVKFGNVEAGDN 160

Query: 181 LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
           LL RLA+E + N G+A+PV++MRQG LINL +TPR WQGRGLLGCHF+ML
Sbjct: 161 LLPRLASEAQTNHGHAIPVIVMRQGALINLTMTPRTWQGRGLLGCHFQML 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2174453	227	AT5G57950 "AT5G57950" [Arabido	0.978	0.991	0.612	6.3e-69
UNIPROTKB|Q3SZ19	221	PSMD9 "26S proteasome non-ATPa	0.556	0.579	0.263	3.1e-26
UNIPROTKB|O00233	223	PSMD9 "26S proteasome non-ATPa	0.356	0.367	0.353	8.2e-26
GENEDB_PFALCIPARUM|PFC0785c	225	PFC0785c "proteasome regulator	0.382	0.391	0.395	2e-21
UNIPROTKB|O77379	225	PFC0785c "Proteasome regulator	0.382	0.391	0.395	2e-21
DICTYBASE|DDB_G0275753	262	psmD9 "26S proteasome non-ATPa	0.904	0.793	0.281	9.2e-20
POMBASE|SPAC2H10.02c	213	SPAC2H10.02c "26S proteasome r	0.869	0.938	0.285	6.7e-17
UNIPROTKB|Q10920	197	C44B7.1 "Probable 26S proteaso	0.356	0.416	0.277	1.9e-15
FB|FBgn0038166	220	CG9588 [Drosophila melanogaste	0.573	0.6	0.343	7.9e-14
CGD|CAL0000640	231	orf19.2301 [Candida albicans (	0.352	0.350	0.357	3e-13

TAIR|locus:2174453 AT5G57950 "AT5G57950" [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.3e-69, P = 6.3e-69
 Identities = 142/232 (61%), Positives = 178/232 (76%)

Query:     1 MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVR 60
             MVG NLKAE M+LM+KR+A+E +MN+I++RL    GPGLSGNL+DSEGFPR DIDI +VR
Sbjct:     1 MVGANLKAETMALMDKRTAMETEMNSIVERLCNPGGPGLSGNLIDSEGFPREDIDIPMVR 60

Query:    61 SERRRLAELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNP--SILGT 118
             +ERRRLAELR++H EITEKIN NIQ+LHS R     +S KDSG +  S +     S+  +
Sbjct:    61 TERRRLAELRSEHGEITEKINVNIQILHSVRPTSRASSTKDSGPEETSLSGAAVNSLSAS 120

Query:   119 VQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAG 178
             +Q++ F+     + P  MDVDV+   PFA++DEI ++SPAAE GLQLGDQVLKFG VE G
Sbjct:   121 MQTSGFSVT---SGP--MDVDVVTSIPFAMVDEINESSPAAEGGLQLGDQVLKFGNVEGG 175

Query:   179 DNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCHFRML 230
             DNLL+RLAAE + NQG AV V +MRQG  + L+VTPR WQGRGLLGCHFR++
Sbjct:   176 DNLLQRLAAEAQSNQGQAVSVQVMRQGAKVVLSVTPRIWQGRGLLGCHFRLV 227

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0035556 "intracellular signal transduction" evidence=ISS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|Q3SZ19 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
 Identities = 34/129 (26%), Positives = 70/129 (54%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
             +++  L+ ++  +EA + A  + L    G G++  LVD EG+PR D+D++ VR+ R  + 
Sbjct:    21 SDVQELIRRKEEIEAQIKANYEVLESQKGIGMNEPLVDCEGYPRADVDLYQVRTARHNIV 80

Query:    68 ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
              L+NDHK + +++ + +  LH+           ++  +  S +Q+   L   Q+ +  N+
Sbjct:    81 CLQNDHKAVMKQVEDALHQLHARDKEKQARDLAEAHREALSRDQSQG-LSPAQAFAKVNS 139

Query:   128 VPRNSPAAM 136
             +   SPA++
Sbjct:   140 ISPGSPASI 148

GO:0070682 "proteasome regulatory particle assembly" evidence=ISS

UNIPROTKB|O00233 PSMD9 "26S proteasome non-ATPase regulatory subunit 9" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 29/82 (35%), Positives = 52/82 (63%)

Query:     8 AEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLA 67
             +++  LM ++  +EA + A  D L    G G++  LVD EG+PR+D+D++ VR+ R  + 
Sbjct:    21 SDVQELMRRKEEIEAQIKANYDVLESQKGIGMNEPLVDCEGYPRSDVDLYQVRTARHNII 80

Query:    68 ELRNDHKEITEKINENIQLLHS 89
              L+NDHK + +++ E +  LH+
Sbjct:    81 CLQNDHKAVMKQVEEALHQLHA 102

GO:0005838 "proteasome regulatory particle" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=NAS

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0046676 "negative regulation of insulin secretion" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0032024 "positive regulation of insulin secretion" evidence=ISS

GO:0043425 "bHLH transcription factor binding" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GENEDB_PFALCIPARUM|PFC0785c PFC0785c "proteasome regulatory protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 167 (63.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:     5 NLKAEIMSLMEKRSALEADMNAIIDRLS--QSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
             NL+ E   L++KR  +E ++   +D L   ++   G+ GNL+DSEGFPR DIDI+ +R  
Sbjct:     2 NLE-EFNELVKKREDIENELKEHMDFLERPENKNVGMKGNLIDSEGFPRNDIDIYSIRVA 60

Query:    63 RRRLAELRNDHKEITEKINENIQLLHSARLV 93
             R ++  L+ND+ +I +K+ E I  +HS   V
Sbjct:    61 RNKIICLKNDYIDINKKLEEYIHKVHSTHPV 91

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005838 "proteasome regulatory particle" evidence=ISS

UNIPROTKB|O77379 PFC0785c "Proteasome regulatory protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 167 (63.8 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 36/91 (39%), Positives = 57/91 (62%)

Query:     5 NLKAEIMSLMEKRSALEADMNAIIDRLS--QSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
             NL+ E   L++KR  +E ++   +D L   ++   G+ GNL+DSEGFPR DIDI+ +R  
Sbjct:     2 NLE-EFNELVKKREDIENELKEHMDFLERPENKNVGMKGNLIDSEGFPRNDIDIYSIRVA 60

Query:    63 RRRLAELRNDHKEITEKINENIQLLHSARLV 93
             R ++  L+ND+ +I +K+ E I  +HS   V
Sbjct:    61 RNKIICLKNDYIDINKKLEEYIHKVHSTHPV 91

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

DICTYBASE|DDB_G0275753 psmD9 "26S proteasome non-ATPase regulatory subunit 9" [Dictyostelium discoideum (taxid:44689)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 64/227 (28%), Positives = 119/227 (52%)

Query:    14 MEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHL-VRSERRRLAELRND 72
             +EK   LE+ MN +  +       GL G+  DSEG+P   +++ + V+  R R+A ++ND
Sbjct:    35 LEKE--LESLMNFL--KSGDGKTFGLKGSFTDSEGYPSPHLELIIEVKKARSRIAHIQND 90

Query:    73 HKEITEKINENIQLLHSARLVPVPTSAKDSGDD--GGSNNQNPSILGTVQSASFNNAVPR 130
             +K++ + I  +++ LH +      +S+  S ++    SNN N +    ++          
Sbjct:    91 YKQVMKDIEFHLEKLHKSPTNKNQSSSTFSINNTTSTSNNNNNNNEDEMKIDKPLTVETE 150

Query:   131 NSPAAMDVDVI-IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV-------EAGDNL- 181
               P  ++V+V  +  PF  ID +++ SP+ +  L+ GD + +FGTV       + GDNL 
Sbjct:   151 TKPKPIEVEVEKVGIPFVYIDLVSEGSPSDKANLKKGDLIFQFGTVGPFFEERQVGDNLN 210

Query:   182 ---LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC 225
                L+ +A   R ++  A+ + + R   +I+ ++ PR W G+GL+GC
Sbjct:   211 SNHLQSIATIVRNSENKAIQIKLSRGTSIISTSLIPRKWSGQGLIGC 257

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0005838 "proteasome regulatory particle" evidence=ISS

POMBASE|SPAC2H10.02c SPAC2H10.02c "26S proteasome regulatory particle assembly protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 65/228 (28%), Positives = 108/228 (47%)

Query:    14 MEKRSALEADMNAIIDRLSQSNGPGLSGN------LVDSEGFPRTDIDIHLVRSERRRLA 67
             M++   L+     I +RL++  G  L         L+  +GFPR+DID+  +R+ R  + 
Sbjct:     1 MDEFKQLDLKKREIENRLNELEGVLLKERVTMDTPLLTEDGFPRSDIDVPSIRTARHEII 60

Query:    68 ELRNDHKEITEKINENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNA 127
              LRNDH+E+ ++I + ++ + S         +K+S     + N    +       +FN A
Sbjct:    61 TLRNDHRELEDQIKKVLEKVFSG-------FSKESL----AANDETKLAQEADPLNFNAA 109

Query:   128 VPRNSPAAMDVDVIIR-RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLA 186
                 +       ++ R +PF V+D +   SPA E GL +GD+++    V +    L  L 
Sbjct:   110 NYNMNDIISRSKILGRVKPFCVVDSVAVESPAQEAGLCIGDELVHVQNVTS----LSELP 165

Query:   187 AEGRKNQGNAVPVVIMR----QGG--LINLAVTPRPWQGRGLLGCHFR 228
                  N    + V+++R     G   L+ L +TP  WQG GLLGCH R
Sbjct:   166 TFISNNVNKTLDVLLIRGYSADGSTNLVELKLTPHKWQGPGLLGCHLR 213

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IC

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

UNIPROTKB|Q10920 C44B7.1 "Probable 26S proteasome non-ATPase regulatory subunit 9" [Caenorhabditis elegans (taxid:6239)]

 Score = 129 (50.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
 Identities = 23/83 (27%), Positives = 47/83 (56%)

Query:   145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMR 203
             PF  I  + + SPA   G +  D ++++G +  G+ N ++ +A   ++++   + V ++R
Sbjct:   106 PFVKISSVVELSPADIGGFRKDDLIIQYGNLHHGNFNDMQEVAQITKQSEDKIIRVTVIR 165

Query:   204 QGGLINLAVTPRPWQGRGLLGCH 226
             +   + L + P+ W G GLLGC+
Sbjct:   166 ENRPVRLEICPKKWSGPGLLGCN 188

GO:0005515 "protein binding" evidence=IPI

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0038166 CG9588 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 47/137 (34%), Positives = 68/137 (49%)

Query:     3 GTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSE 62
             GT  K  +  L+  +  LEA +N     L+ ++  G+SG LVD+EGFPR DID++ VR  
Sbjct:     4 GTTTKERLERLINAKKQLEAQINRNGQILAANDNVGMSGPLVDAEGFPRNDIDVYQVRLA 63

Query:    63 RRRLAELRNDHKEITEKINENIQLLHSARLVPVP-----TSAKDSGDDGGSNNQNPSILG 117
             R+ +  L+NDHKE+  +I   +   HS      P      SA D   D      N + L 
Sbjct:    64 RQTIICLQNDHKELMNQIQTLLNQYHSEIATTDPELVNRASALDLDSDRSPGGANITDLA 123

Query:   118 TVQSASFNNAVPRNSPA 134
               ++    N V  +SPA
Sbjct:   124 PARAIVVVNLVSPDSPA 140

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=IMP

CGD|CAL0000640 orf19.2301 [Candida albicans (taxid:5476)]

 Score = 122 (48.0 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 30/84 (35%), Positives = 41/84 (48%)

Query:   145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTV--EAGDNLLERLAAEGRKNQGNAVPVVIM 202
             PFA + E+    PA   GL+ GDQ++ F      A +N L  L +  R  Q   + V + 
Sbjct:   143 PFAQVREVVSGGPAFNSGLKEGDQIIVFDDDIHAANNNKLGSLVSRVRSKQNEEIKVDLK 202

Query:   203 RQGGLINLAVTPRP-WQGRGLLGC 225
             R    I L + P   W G+GLLGC
Sbjct:   203 RGEERITLKLIPSDNWDGQGLLGC 226

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017223001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (254 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00006696001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (267 aa)						•	•		0.518
	GSVIVG00014791001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)						•	•		0.488
	GSVIVG00024499001	RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (245 aa)						•	•		0.483
	GSVIVG00036762001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (440 aa)						•	•		0.473
	GSVIVG00026350001	RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (223 aa)					•	•	•		0.418
	GSVIVG00019352001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (320 aa)					•	•	•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	1e-06
COG0265	347	COG0265, DegQ, Trypsin-like serine proteases, typi	1e-04
pfam13180	81	pfam13180, PDZ_2, PDZ domain	2e-04
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	3e-04
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	5e-04
PRK10779	449	PRK10779, PRK10779, zinc metallopeptidase RseP; Pr	0.003
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	0.004

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206
            VI E+   SPAA+ GL+ GD++L     +      E L    ++N G  + + + R G 
Sbjct: 14  PVIGEVVPGSPAAKAGLKAGDRILAINGQKIKS--WEDLVDAVQENPGKPLTLTVERNGE 71

Query: 207 LINLAVTP 214
            I L +TP
Sbjct: 72  TITLTLTP 79

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206
           AV+  +   SPAA+ G++ GD +          +L + +AA      G+ V + ++R G 
Sbjct: 272 AVVLGVLPGSPAAKAGIKAGDIITAVNGKPV-ASLSDLVAAVASNRPGDEVALKLLRGGK 330

Query: 207 LINLAVTP 214
              LAVT 
Sbjct: 331 ERELAVTL 338

Length = 347

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
             +  + + SPAA+ GL+ GD +L      V +   L+E +        G+ V + + R 
Sbjct: 15  VTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVI---LNGKPGDTVKLTVYRD 71

Query: 205 GGLINLAVT 213
           G    + V 
Sbjct: 72  GKKKTVEVK 80

Length = 81

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            ++  +   SPAA+ GL+ GD +L      V++  +L   LA       G+ V + ++R 
Sbjct: 26  VLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALA---ELKPGDKVTLTVLRG 82

Query: 205 GGLINLAV 212
           G  + + V
Sbjct: 83  GKELTVTV 90

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%)

Query: 145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVI 201
              V+  +   SPA   GLQ GD +L     +  +  LE +A   +K  G  V + +
Sbjct: 13  GGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|182723 PRK10779, PRK10779, zinc metallopeptidase RseP; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 8/78 (10%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQ 204
            V+ E+   S A++ GLQ GD+++K      G  L +        R N G  + + I RQ
Sbjct: 223 PVLAEVQPNSAASKAGLQAGDRIVKVD----GQPLTQWQTFVTLVRDNPGKPLALEIERQ 278

Query: 205 GGLINLAVTP--RPWQGR 220
           G  ++L +TP  +P  G+
Sbjct: 279 GSPLSLTLTPDSKPGNGK 296

Length = 449

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 138 VDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAV 197
           V         V+  +   SPAA+ GL++GD +L+                  +K  G  V
Sbjct: 19  VGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGLTHLEAVDLLKKA-GGKV 77

Query: 198 PVVIMRQG 205
            + ++R G
Sbjct: 78  TLTVLRGG 85

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
KOG3129	231	consensus 26S proteasome regulatory complex, subun	100.0
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.47
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	99.46
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	99.33
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	99.3
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	99.27
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.21
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	99.14
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	99.13
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	99.11
PRK10779	449	zinc metallopeptidase RseP; Provisional	99.05
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	99.02
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	98.99
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	98.96
PRK10898	353	serine endoprotease; Provisional	98.94
PRK10139	455	serine endoprotease; Provisional	98.93
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.93
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.87
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.85
PRK10942	473	serine endoprotease; Provisional	98.85
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	98.78
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.75
PRK10139	455	serine endoprotease; Provisional	98.75
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.74
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	98.72
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	98.72
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.71
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	98.66
PRK10942	473	serine endoprotease; Provisional	98.66
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.48
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.43
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	98.33
PRK11186	667	carboxy-terminal protease; Provisional	98.25
KOG3834	462	consensus Golgi reassembly stacking protein GRASP6	98.17
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	98.12
KOG1421	955	consensus Predicted signaling-associated protein (	97.97
PRK09681	276	putative type II secretion protein GspC; Provision	97.92
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.8
KOG3553	124	consensus Tax interaction protein TIP1 [Cell wall/	97.74
COG3975	558	Predicted protease with the C-terminal PDZ domain	97.6
KOG3834	462	consensus Golgi reassembly stacking protein GRASP6	97.56
KOG1320	473	consensus Serine protease [Posttranslational modif	97.26
COG3031	275	PulC Type II secretory pathway, component PulC [In	96.85
COG0750	375	Predicted membrane-associated Zn-dependent proteas	96.85
KOG3580	1027	consensus Tight junction proteins [Signal transduc	96.57
KOG3532	1051	consensus Predicted protein kinase [General functi	96.43
KOG3209	984	consensus WW domain-containing protein [General fu	96.33
KOG3550	207	consensus Receptor targeting protein Lin-7 [Extrac	95.94
PF12812	78	PDZ_1: PDZ-like domain	95.79
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	95.37
KOG3605	829	consensus Beta amyloid precursor-binding protein [	95.35
KOG3651	429	consensus Protein kinase C, alpha binding protein	95.12
KOG3580	1027	consensus Tight junction proteins [Signal transduc	94.7
KOG3209	984	consensus WW domain-containing protein [General fu	94.49
KOG3552	1298	consensus FERM domain protein FRM-8 [General funct	94.37
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	93.17
KOG1421	955	consensus Predicted signaling-associated protein (	92.85
KOG3549	505	consensus Syntrophins (type gamma) [Extracellular	90.92
KOG0606	1205	consensus Microtubule-associated serine/threonine	90.92
KOG0609	542	consensus Calcium/calmodulin-dependent serine prot	89.39
KOG1892	1629	consensus Actin filament-binding protein Afadin [C	88.26
KOG3551	506	consensus Syntrophins (type beta) [Extracellular s	84.94
KOG2921	484	consensus Intramembrane metalloprotease (sterol-re	83.64
KOG3571	626	consensus Dishevelled 3 and related proteins [Gene	80.21

>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.1e-58  Score=379.72  Aligned_cols=211  Identities=41%  Similarity=0.706  Sum_probs=170.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHhhchHHHHHHHH
Q 026990            1 MVGTNLKAEIMSLMEKRSALEADMNAIIDRLSQSNGPGLSGNLVDSEGFPRTDIDIHLVRSERRRLAELRNDHKEITEKI   80 (230)
Q Consensus         1 ~~~~~~~~~~~~L~~~k~~iE~el~~l~~~L~~~~~v~m~~~Lvd~eGFPR~DiDv~~vR~~R~~i~~L~ND~k~v~~~i   80 (230)
                      |+|+..+.++++||.+|++||.||++++++|.+ ++.+|++||||+|||||+|||||+||++||+|||||||||+||++|
T Consensus        14 ~ag~~~~~~~~eLm~~K~eiE~qin~~~~vL~~-~~~~Md~pLvd~eGfPRsDIDV~qVRtaRh~ii~LrNDh~el~~qi   92 (231)
T KOG3129|consen   14 MAGANTKSELKELMDKKTEIETQINELVEVLEN-NGGTMDGPLVDAEGFPRSDIDVYQVRTARHNIICLRNDHKELTEQI   92 (231)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcCCCcccCCCCCccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            689999999999999999999999999999988 5666999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCceEEEEecCCChhhh
Q 026990           81 NENIQLLHSARLVPVPTSAKDSGDDGGSNNQNPSILGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAE  160 (230)
Q Consensus        81 e~~L~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~V~~V~~~SPA~~  160 (230)
                      ++.|+++|+....+... .+   +.+.. ..+.         .....   ..+..+ .......||++|++|.|+|||++
T Consensus        93 ~~~l~q~hs~~~~~~~~-~~---~~t~a-~~e~---------~~~~~---~~an~~-~~~gP~~~Fa~V~sV~~~SPA~~  154 (231)
T KOG3129|consen   93 EVLLNQLHSERPTSRKE-VT---DDTGA-EEEA---------DSRAA---GNANSM-TSLGPMRPFAVVDSVVPGSPADE  154 (231)
T ss_pred             HHHHHHHhccccccchh-hc---cccch-hhcc---------ccccc---cccccc-cccCCccceEEEeecCCCChhhh
Confidence            99999999853221111 11   00000 0000         00000   000000 01122357999999999999999


Q ss_pred             cCCCCCCEEEEECCee-CCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcceeeEE-EEeC
Q 026990          161 DGLQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGCH-FRML  230 (230)
Q Consensus       161 AGL~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~LG~~-~~pl  230 (230)
                      |||+.||.|++||.++ .|+..+..+...++...++.+.++|.|.|+.+.+.|+|++|+|+|+|||+ +.|+
T Consensus       155 aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~W~GrGLLGC~~i~pi  226 (231)
T KOG3129|consen  155 AGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKKWQGRGLLGCNYIQPI  226 (231)
T ss_pred             hCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCcccccCCcceeeeeeccc
Confidence            9999999999999998 56666888888888889999999999999999999999999999999999 6664

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.47  E-value=5.7e-13  Score=96.83  Aligned_cols=67  Identities=30%  Similarity=0.381  Sum_probs=61.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      .+++|.+|.++|||++|||++||+|++|||.+  +.++.++..++. ..+|+++.|+|.|+|+.++++++
T Consensus        14 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~   81 (82)
T PF13180_consen   14 GGVVVVSVIPGSPAAKAGLQPGDIILAINGKP--VNSSEDLVNILSKGKPGDTVTLTVLRDGEELTVEVT   81 (82)
T ss_dssp             SSEEEEEESTTSHHHHTTS-TTEEEEEETTEE--SSSHHHHHHHHHCSSTTSEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEEeCCCCcHHHCCCCCCcEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEE
Confidence            37899999999999999999999999999999  999999999885 46899999999999999998876

...

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=99.46  E-value=3e-13  Score=108.28  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=67.2

Q ss_pred             CCceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-CCCC
Q 026990          144 RPFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG  219 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R--~g~~~~l~l~p~-~~~g  219 (230)
                      ..+..|..|.|+|||++|||++ .|.|+.+++..  ..+.++|...+..+.++++.+.|.+  ....++++++|. .|+|
T Consensus        42 ~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~--l~~~~~l~~~v~~~~~~~l~L~Vyns~~~~vR~V~i~P~~~WgG  119 (138)
T PF04495_consen   42 EEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGL--LDDEDDLFELVEANENKPLQLYVYNSKTDSVREVTITPSRNWGG  119 (138)
T ss_dssp             CCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE----STCHHHHHHHHTTTS-EEEEEEETTTTCEEEEEE---TTSSS
T ss_pred             cceEEEeEecCCCHHHHCCccccccEEEEcccee--cCCHHHHHHHHHHcCCCcEEEEEEECCCCeEEEEEEEcCCCCCC
Confidence            4678999999999999999999 69999999988  7788999999999999999999996  456789999997 7999


Q ss_pred             cceeeEEEE
Q 026990          220 RGLLGCHFR  228 (230)
Q Consensus       220 ~g~LG~~~~  228 (230)
                      +|+|||.+.
T Consensus       120 ~GlLGc~ig  128 (138)
T PF04495_consen  120 RGLLGCHIG  128 (138)
T ss_dssp             STSSSEEEE
T ss_pred             CeeeeEEec
Confidence            999999985

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.33  E-value=1.7e-11  Score=88.55  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=61.1

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      .+++|..|.++|||+++||++||+|++|||.+  +.+|.++...+... .|..+.+++.|+|+..+++++
T Consensus        10 ~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~--v~~~~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~   77 (79)
T cd00991          10 AGVVIVGVIVGSPAENAVLHTGDVIYSINGTP--ITTLEDFMEALKPTKPGEVITVTVLPSTTKLTNVST   77 (79)
T ss_pred             CcEEEEEECCCChHHhcCCCCCCEEEEECCEE--cCCHHHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence            46889999999999999999999999999999  99999999998864 588999999999998888765

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=99.30  E-value=3.2e-11  Score=86.12  Aligned_cols=66  Identities=33%  Similarity=0.546  Sum_probs=60.0

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      ++|..|.++|||+++||++||+|++|||.+  +.++.++...+....+..+.+++.|+|+..++.++|
T Consensus        14 ~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~l~~~~~~~~~l~v~r~~~~~~~~l~~   79 (79)
T cd00989          14 PVIGEVVPGSPAAKAGLKAGDRILAINGQK--IKSWEDLVDAVQENPGKPLTLTVERNGETITLTLTP   79 (79)
T ss_pred             cEEEeECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHCCCceEEEEEEECCEEEEEEecC
Confidence            689999999999999999999999999999  999999999888766778999999999888877754

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=99.27  E-value=7.2e-11  Score=84.93  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=62.8

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      -+++|..|.++|||+. ||++||+|++|||.+  +.+|+++...+.. ..+..+.+++.|+|+..++++++..|
T Consensus         8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~~~   78 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKP--FKEAEELIDYIQSKKEGDTVKLKVKREEKELPEDLILKTF   78 (79)
T ss_pred             cCEEEEEECCCCchhh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence            3688999999999997 899999999999999  9999999998875 56889999999999999999887654

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.21  E-value=1.1e-10  Score=84.49  Aligned_cols=69  Identities=25%  Similarity=0.293  Sum_probs=61.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~-g~~~~l~l~p~  215 (230)
                      ..++|..|.++|||+++||++||+|++|||.+  +.+|  .++..++....++.+.+++.|+ |+..++.++|.
T Consensus        13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~--i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~~~~~~~~~~~   84 (85)
T cd00988          13 GGLVITSVLPGSPAAKAGIKAGDIIVAIDGEP--VDGLSLEDVVKLLRGKAGTKVRLTLKRGDGEPREVTLTRL   84 (85)
T ss_pred             CeEEEEEecCCCCHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHhcCCCCCEEEEEEEcCCCCEEEEEEEEC
Confidence            45789999999999999999999999999999  8888  8998888776788999999999 88888888774

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=99.14  E-value=4.6e-10  Score=80.46  Aligned_cols=66  Identities=24%  Similarity=0.389  Sum_probs=55.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .++|..|.++|||+++||++||+|++|||.+  +.+|.++...+  ..+..+.+++.|+|+..++.+++.
T Consensus        13 ~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~--v~~~~~~l~~~--~~~~~v~l~v~r~g~~~~~~v~~~   78 (80)
T cd00990          13 LGKVTFVRDDSPADKAGLVAGDELVAVNGWR--VDALQDRLKEY--QAGDPVELTVFRDDRLIEVPLTLA   78 (80)
T ss_pred             cEEEEEECCCChHHHhCCCCCCEEEEECCEE--hHHHHHHHHhc--CCCCEEEEEEEECCEEEEEEEEec
Confidence            4789999999999999999999999999999  77766553332  367789999999999888887763

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=99.13  E-value=5.5e-10  Score=81.41  Aligned_cols=64  Identities=22%  Similarity=0.347  Sum_probs=57.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA  211 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~  211 (230)
                      +++|..|.++|||+++||++||+|++|||.+  +.++.++...+... .+..+.+++.|+|+.+++.
T Consensus        25 g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--i~~~~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~   89 (90)
T cd00987          25 GVLVASVDPGSPAAKAGLKPGDVILAVNGKP--VKSVADLRRALAELKPGDKVTLTVLRGGKELTVT   89 (90)
T ss_pred             EEEEEEECCCCHHHHcCCCcCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence            6889999999999999999999999999999  99999999888764 4788999999999876654

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00054 RIP metalloprotease RseP

Probab=99.11  E-value=6.3e-10  Score=104.04  Aligned_cols=78  Identities=22%  Similarity=0.398  Sum_probs=68.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcceeeE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLGC  225 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~LG~  225 (230)
                      .++|.+|.++|||++|||++||+|++|||++  +.+|+++...+....++++.++|.|+|+..++.++|...++.+ +|+
T Consensus       204 g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~~-iGi  280 (420)
T TIGR00054       204 EPVLSDVTPNSPAEKAGLKEGDYIQSINGEK--LRSWTDFVSAVKENPGKSMDIKVERNGETLSISLTPEAKGKIG-IGI  280 (420)
T ss_pred             CcEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCceEEEEEECCEEEEEEEEEcCCCceE-EEE
Confidence            4789999999999999999999999999999  9999999999988788889999999999999999996422222 776


Q ss_pred             E
Q 026990          226 H  226 (230)
Q Consensus       226 ~  226 (230)
                      .
T Consensus       281 ~  281 (420)
T TIGR00054       281 S  281 (420)
T ss_pred             e
Confidence            4

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=99.05  E-value=1.4e-09  Score=102.39  Aligned_cols=79  Identities=29%  Similarity=0.447  Sum_probs=69.3

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC--C--cce
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ--G--RGL  222 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~--g--~g~  222 (230)
                      ++|..|.++|||++|||++||+|++|||++  +.+|+++...+....++.+.++|.|+|+..++.++|....  +  .+.
T Consensus       223 ~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~--V~s~~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~~~~~~g~~~~~  300 (449)
T PRK10779        223 PVLAEVQPNSAASKAGLQAGDRIVKVDGQP--LTQWQTFVTLVRDNPGKPLALEIERQGSPLSLTLTPDSKPGNGKAEGF  300 (449)
T ss_pred             cEEEeeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEEeeeecCCCceeeE
Confidence            689999999999999999999999999999  9999999999988778899999999999999999886321  2  356


Q ss_pred             eeEEE
Q 026990          223 LGCHF  227 (230)
Q Consensus       223 LG~~~  227 (230)
                      +|+..
T Consensus       301 iGi~~  305 (449)
T PRK10779        301 AGVVP  305 (449)
T ss_pred             EEEec
Confidence            88864

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=99.02  E-value=2.5e-09  Score=99.99  Aligned_cols=83  Identities=23%  Similarity=0.284  Sum_probs=70.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCCC-----
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ-----  218 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~~-----  218 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++...+.. ..|..+.++|.|+|+..++.+++..|.     
T Consensus       257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~--i~~~~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~  334 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKP--ISSFADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLGASPEEQAS  334 (428)
T ss_pred             CceEEEEccCCCChHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECcCCCcccc
Confidence            46889999999999999999999999999999  9999999998875 568899999999999998888765332     


Q ss_pred             -CcceeeEEEEe
Q 026990          219 -GRGLLGCHFRM  229 (230)
Q Consensus       219 -g~g~LG~~~~p  229 (230)
                       ....+|+.+.+
T Consensus       335 ~~~~~lGi~~~~  346 (428)
T TIGR02037       335 SSNPFLGLTVAN  346 (428)
T ss_pred             ccccccceEEec
Confidence             12457777664

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=98.99  E-value=2.1e-09  Score=75.00  Aligned_cols=55  Identities=29%  Similarity=0.376  Sum_probs=49.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVI  201 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V  201 (230)
                      .+++|..|.++|||+.+||++||+|++|||.+  +.++  +++...++...|+.+.++|
T Consensus        13 ~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136          13 GGVVVLSVEPGSPAERAGLQAGDVILAVNGTD--VKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            36899999999999999999999999999999  8887  9999999887788888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=98.96  E-value=5.7e-09  Score=96.56  Aligned_cols=73  Identities=30%  Similarity=0.449  Sum_probs=65.1

Q ss_pred             CChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC--CCCcceeeEEEEe
Q 026990          155 ASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQGRGLLGCHFRM  229 (230)
Q Consensus       155 ~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~--~~g~g~LG~~~~p  229 (230)
                      +|||++|||++||+|++|||.+  +.+|+++..++....++.+.++|.|+|+..++.++|..  ..+.+.||++++.
T Consensus       123 ~SPAa~AGLq~GDiIvsING~~--V~s~~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V~Pv~~~~d~~ykLGl~VrD  197 (402)
T TIGR02860       123 HSPGEEAGIQIGDRILKINGEK--IKNMDDLANLINKAGGEKLTLTIERGGKIIETVIKPVKDKEEGRYRIGLYIRD  197 (402)
T ss_pred             CCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCeEEEEEEECCEEEEEEEEEeeeCCCCCEEEEEEEEc
Confidence            6999999999999999999999  99999999999887788999999999999999998752  2466889998763

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>PRK10898 serine endoprotease; Provisional

Probab=98.94  E-value=7.5e-09  Score=94.80  Aligned_cols=72  Identities=24%  Similarity=0.392  Sum_probs=65.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQ  218 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~~  218 (230)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.++...+.. ..|+.+.++|.|+|+.+++.+++..|.
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~p  351 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQEYP  351 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEeccCC
Confidence            47899999999999999999999999999999  9999999888876 678899999999999999998886553

>PRK10139 serine endoprotease; Provisional

Probab=98.93  E-value=6.6e-09  Score=98.15  Aligned_cols=69  Identities=22%  Similarity=0.292  Sum_probs=63.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|.++...+.. ..|+.+.++|.|+|+.+++.+++.
T Consensus       290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~~  359 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD  359 (455)
T ss_pred             CceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEC
Confidence            36899999999999999999999999999999  9999999998876 678899999999999988888764

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.93  E-value=6.7e-09  Score=95.01  Aligned_cols=71  Identities=28%  Similarity=0.330  Sum_probs=64.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      .+++|..|.++|||+++||++||+|++|||++  +.++.++...+.. ..|+.+.++|.|+|+.+++.+++..|
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  349 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKD--VIGAEELMDRIAETRPGSKVMVTVLRQGKQLELPVTIDEK  349 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecCC
Confidence            36889999999999999999999999999999  9999999998876 67889999999999999988887543

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.87  E-value=1.7e-08  Score=88.83  Aligned_cols=67  Identities=16%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      .+..|..+.++|||+++||++||+|++|||.+  +.+++++..++.. ..++.+.++|.|+|+.+++.+.
T Consensus       191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~--i~~~~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~  258 (259)
T TIGR01713       191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLD--LRDPEQAFQALQMLREETNLTLTVERDGQREDIYVR  258 (259)
T ss_pred             eEEEEEecCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence            47789999999999999999999999999999  9999999998886 4678999999999998888764

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.85  E-value=7.4e-09  Score=97.57  Aligned_cols=66  Identities=15%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      +.|.+|.++|||++|||++||+|++|||++  +.+|+++...+.. ..++++.++|.|+|+..+++++.
T Consensus       128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~--V~~~~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l  194 (449)
T PRK10779        128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIE--TPDWDAVRLALVSKIGDESTTITVAPFGSDQRRDKTL  194 (449)
T ss_pred             ccccccCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence            478999999999999999999999999999  9999999887765 45678999999999876666554

>PRK10942 serine endoprotease; Provisional

Probab=98.85  E-value=2.8e-08  Score=94.39  Aligned_cols=69  Identities=20%  Similarity=0.298  Sum_probs=62.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|+++...+.. ..|+.+.++|.|+|+.+++.+++.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~--V~s~~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~  380 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQ  380 (473)
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeC
Confidence            36889999999999999999999999999999  9999999988875 568899999999999888887753

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=98.78  E-value=2.7e-08  Score=92.83  Aligned_cols=71  Identities=18%  Similarity=0.201  Sum_probs=58.9

Q ss_pred             EEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE-ECCEEEEEEEEecCCCCcceeeEEE
Q 026990          149 IDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM-RQGGLINLAVTPRPWQGRGLLGCHF  227 (230)
Q Consensus       149 V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~-R~g~~~~l~l~p~~~~g~g~LG~~~  227 (230)
                      |..|.|+|||++|||++||+|++|||.+  +.+|.++..++.   +..+.++|. |+|+..++.+.|...   .-||+.+
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~--V~Dw~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~~d---edlG~~f   73 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVA--PRDLIDYQFLCA---DEELELEVLDANGESHQIEIEKDLD---EDLGLEF   73 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHhc---CCcEEEEEEcCCCeEEEEEEecCCC---CCCcEEe
Confidence            6789999999999999999999999999  999999887774   357889886 789888998888532   2256554

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.75  E-value=7.2e-08  Score=89.41  Aligned_cols=67  Identities=21%  Similarity=0.234  Sum_probs=58.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  ++.++...+....|..+.++|.|+|+..+++++.
T Consensus       103 g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~--v~~~~~~~~~~~l~g~~g~~v~ltv~r~g~~~~~~l~r  171 (389)
T PLN00049        103 GLVVVAPAPGGPAARAGIRPGDVILAIDGTS--TEGLSLYEAADRLQGPEGSSVELTLRRGPETRLVTLTR  171 (389)
T ss_pred             cEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEe
Confidence            5789999999999999999999999999999  65  4677877787777889999999999887777654

>PRK10139 serine endoprotease; Provisional

Probab=98.75  E-value=5.3e-08  Score=92.05  Aligned_cols=64  Identities=25%  Similarity=0.291  Sum_probs=58.2

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      +++|..|.++|||+++||++||+|++|||.+  +.+|+++...+.... +++.++|.|+|+.+.+.+
T Consensus       391 Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~  454 (455)
T PRK10139        391 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLL  454 (455)
T ss_pred             ceEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            5789999999999999999999999999999  999999999998754 689999999999877654

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.74  E-value=3.2e-08  Score=89.82  Aligned_cols=67  Identities=27%  Similarity=0.326  Sum_probs=56.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.+|  .++...+....|..+.++|.|+|+...+++++
T Consensus        63 ~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l  131 (334)
T TIGR00225        63 EIVIVSPFEGSPAEKAGIKPGDKIIKINGKS--VAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTL  131 (334)
T ss_pred             EEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEE
Confidence            5789999999999999999999999999999  7765  67777777677889999999988655554443

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=98.72  E-value=7.1e-08  Score=68.92  Aligned_cols=54  Identities=19%  Similarity=0.314  Sum_probs=46.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI  201 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V  201 (230)
                      .+++|..|.++|||+++||++||+|++|||.+  +.  ++.++...+....+ .+.++|
T Consensus        26 ~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~--i~~~~~~~~~~~l~~~~~-~v~l~v   81 (82)
T cd00992          26 GGIFVSRVEPGGPAERGGLRVGDRILEVNGVS--VEGLTHEEAVELLKNSGD-EVTLTV   81 (82)
T ss_pred             CCeEEEEECCCChHHhCCCCCCCEEEEECCEE--cCccCHHHHHHHHHhCCC-eEEEEE
Confidence            46899999999999999999999999999999  77  89999998876544 566654

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=98.72  E-value=6.3e-08  Score=69.74  Aligned_cols=57  Identities=16%  Similarity=0.287  Sum_probs=46.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      ++++|.+|.++|||+++||++||+|++|||.++.-.+..++...++...+ ++.++|+
T Consensus        25 ~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~   81 (81)
T PF00595_consen   25 KGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred             CCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence            47899999999999999999999999999999222356777777877655 7888764

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.71  E-value=7.2e-08  Score=90.22  Aligned_cols=64  Identities=28%  Similarity=0.416  Sum_probs=58.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLA  211 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~  211 (230)
                      +++|..|.++|||+++||++||+|++|||++  +.++.++..++... .++.+.++|.|+|+...+.
T Consensus       363 Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~--V~s~~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~  427 (428)
T TIGR02037       363 GVVVTKVVSGSPAARAGLQPGDVILSVNQQP--VSSVAELRKVLDRAKKGGRVALLILRGGATIFVT  427 (428)
T ss_pred             ceEEEEeCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence            5889999999999999999999999999999  99999999998863 6889999999999877654

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=98.66  E-value=1.3e-07  Score=67.66  Aligned_cols=58  Identities=29%  Similarity=0.454  Sum_probs=45.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHH--HHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~--~~l~~~~g~~v~l~V~R~g  205 (230)
                      ++++|..|.++|||+.+||++||+|++||+..  +.++....  ..+.. .+..+.+.+.|++
T Consensus        26 ~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~--v~~~~~~~~~~~~~~-~~~~~~l~i~r~~   85 (85)
T smart00228       26 GGVVVSSVVPGSPAAKAGLKVGDVILEVNGTS--VEGLTHLEAVDLLKK-AGGKVTLTVLRGG   85 (85)
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence            57899999999999999999999999999999  66554433  33333 3458889888864

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>PRK10942 serine endoprotease; Provisional

Probab=98.66  E-value=1.5e-07  Score=89.43  Aligned_cols=65  Identities=22%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      .+++|.+|.++|||+++||++||+|++|||++  +.+|+++...+.... +.+.++|.|+|..+.+.+
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~--V~s~~dl~~~l~~~~-~~v~l~V~R~g~~~~v~~  472 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQP--VKNIAELRKILDSKP-SVLALNIQRGDSSIYLLM  472 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence            35889999999999999999999999999999  999999999988744 789999999998876654

>TIGR00054 RIP metalloprotease RseP

Probab=98.48  E-value=3.3e-07  Score=85.85  Aligned_cols=64  Identities=17%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLA  211 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~  211 (230)
                      ..+.|.+|.++|||++|||++||+|+++||.+  +.++.++...+.... .++.+.+.|+++..++.
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~--v~~~~dl~~~ia~~~-~~v~~~I~r~g~~~~l~  191 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNK--IPGFKDVRQQIADIA-GEPMVEILAERENWTFE  191 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhhc-ccceEEEEEecCceEec
Confidence            45789999999999999999999999999999  999999998887655 67889999977665543

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1e-06  Score=82.18  Aligned_cols=69  Identities=26%  Similarity=0.365  Sum_probs=57.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~--g~~~~l~l~  213 (230)
                      -..+|.++.+++||++|||++||+|++|||.++.-.+.+++...++..+|..|++++.|.  ++.++++++
T Consensus       112 ~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~  182 (406)
T COG0793         112 GGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLT  182 (406)
T ss_pred             CCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEE
Confidence            457889999999999999999999999999993233457788888888999999999996  455655553

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=4.6e-06  Score=75.88  Aligned_cols=71  Identities=28%  Similarity=0.312  Sum_probs=64.5

Q ss_pred             CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecC
Q 026990          144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRP  216 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~  216 (230)
                      ..++.|..|.++|||+++|++.||+|+++||.+  +.+..++...+.. ..|..+.+++.|+|+..++.++...
T Consensus       269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~--v~~~~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~  340 (347)
T COG0265         269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKP--VASLSDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD  340 (347)
T ss_pred             CCceEEEecCCCChHHHcCCCCCCEEEEECCEE--ccCHHHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence            356899999999999999999999999999999  9999999988875 4699999999999999999988764

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.25  E-value=4.2e-06  Score=82.43  Aligned_cols=69  Identities=22%  Similarity=0.327  Sum_probs=55.0

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEEC--Cee-CCC--CCHHHHHHHHhhCCCCeEEEEEEEC---CEEEEEEEEe
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFG--TVE-AGD--NLLERLAAEGRKNQGNAVPVVIMRQ---GGLINLAVTP  214 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~In--g~~-~~v--~~~~dl~~~l~~~~g~~v~l~V~R~---g~~~~l~l~p  214 (230)
                      +.+|..|.|||||++| ||++||+|++||  |.+ ..+  .+++++...++...|.+|.++|.|.   ++..+++++.
T Consensus       256 ~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R  333 (667)
T PRK11186        256 YTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIVTLTR  333 (667)
T ss_pred             eEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeCCCCCceEEEEEEe
Confidence            5789999999999998 999999999998  443 112  3467888899888999999999983   4566666653

>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=3.3e-06  Score=78.05  Aligned_cols=78  Identities=24%  Similarity=0.441  Sum_probs=67.0

Q ss_pred             EEEEecCCChhhhcCCC-CCCEEEEE-CCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC--CEEEEEEEEec-CCCCcce
Q 026990          148 VIDEITDASPAAEDGLQ-LGDQVLKF-GTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ--GGLINLAVTPR-PWQGRGL  222 (230)
Q Consensus       148 ~V~~V~~~SPA~~AGL~-~GD~Iv~I-ng~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~--g~~~~l~l~p~-~~~g~g~  222 (230)
                      -|.+|.++|||+.|||+ -+|.|+.+ +.+-   ...+|+..++..++++++++.|+.-  ...++++++|. .|+|.|.
T Consensus       112 Hvl~V~p~SPaalAgl~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyVYN~D~d~~ReVti~pn~awGgeg~  188 (462)
T KOG3834|consen  112 HVLSVEPNSPAALAGLRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYVYNHDTDSCREVTITPNSAWGGEGA  188 (462)
T ss_pred             eeeecCCCCHHHhcccccccceEecchhhhc---cchHHHHHHHHhccCCCcceeEeecCCCccceEEeeccccccccce
Confidence            47799999999999999 68999999 5544   6778999999999999999999863  45688999997 6999999


Q ss_pred             eeEEEE
Q 026990          223 LGCHFR  228 (230)
Q Consensus       223 LG~~~~  228 (230)
                      |||.|.
T Consensus       189 lGCgIG  194 (462)
T KOG3834|consen  189 LGCGIG  194 (462)
T ss_pred             eccccc
Confidence            999874

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=98.12  E-value=1.7e-05  Score=71.00  Aligned_cols=84  Identities=15%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             cCCCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEE--ecCC
Q 026990          142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVT--PRPW  217 (230)
Q Consensus       142 ~~~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R-~g~~~~l~l~--p~~~  217 (230)
                      +.+.+++|..|..+|||... |+.||.|++|||.+  +.+.+++..++.+ ..|+.++|.+.| ++.....+++  ....
T Consensus       127 ~~y~gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~--f~s~~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~~~~  203 (342)
T COG3480         127 VTYAGVYVLSVIDNSPFKGK-LEAGDTIIAVDGEP--FTSSDELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIKNDD  203 (342)
T ss_pred             EEEeeEEEEEccCCcchhce-eccCCeEEeeCCee--cCCHHHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEeecc
Confidence            44567788899999999886 99999999999999  9999999999986 579999999997 6655444444  4445


Q ss_pred             CCcceeeEEEE
Q 026990          218 QGRGLLGCHFR  228 (230)
Q Consensus       218 ~g~g~LG~~~~  228 (230)
                      +|++.||+.+.
T Consensus       204 ~g~~giGIsl~  214 (342)
T COG3480         204 NGKAGIGISLV  214 (342)
T ss_pred             CCcceeeeEee
Confidence            67788898764

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=97.97  E-value=4.5e-05  Score=74.25  Aligned_cols=67  Identities=25%  Similarity=0.354  Sum_probs=61.2

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      -.+|..|.++|||++. |++||.+++||+.-  +.++..+.+.+....|+.+.++|+|+|+..+++++..
T Consensus       304 mLvV~~vL~~gpa~k~-Le~GDillavN~t~--l~df~~l~~iLDegvgk~l~LtI~Rggqelel~vtvq  370 (955)
T KOG1421|consen  304 MLVVETVLPEGPAEKK-LEPGDILLAVNSTC--LNDFEALEQILDEGVGKNLELTIQRGGQELELTVTVQ  370 (955)
T ss_pred             eEEEEEeccCCchhhc-cCCCcEEEEEccee--hHHHHHHHHHHhhccCceEEEEEEeCCEEEEEEEEec
Confidence            3678999999999998 99999999999988  8888888888988899999999999999999888765

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.92  E-value=6e-05  Score=66.85  Aligned_cols=62  Identities=11%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             EecCCC---hhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEe
Q 026990          151 EITDAS---PAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       151 ~V~~~S---PA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .|.|+.   -..++||++||++++|||..  ..+.++..++++. .....+.|+|+|+|+..++.+..
T Consensus       210 rl~Pgkd~~lF~~~GLq~GDva~sING~d--L~D~~qa~~l~~~L~~~tei~ltVeRdGq~~~i~i~l  275 (276)
T PRK09681        210 AVKPGADRSLFDASGFKEGDIAIALNQQD--FTDPRAMIALMRQLPSMDSIQLTVLRKGARHDISIAL  275 (276)
T ss_pred             EECCCCcHHHHHHcCCCCCCEEEEeCCee--CCCHHHHHHHHHHhccCCeEEEEEEECCEEEEEEEEc
Confidence            455663   35789999999999999999  8888887777775 55688999999999999887753

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.80  E-value=0.00014  Score=53.97  Aligned_cols=64  Identities=20%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             ceEEEEecCC--------ChhhhcCCC--CCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC-EEEEEE
Q 026990          146 FAVIDEITDA--------SPAAEDGLQ--LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLA  211 (230)
Q Consensus       146 ~~~V~~V~~~--------SPA~~AGL~--~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g-~~~~l~  211 (230)
                      +.+|..+.++        ||-.+.|+.  +||.|++|||++  +..-.++..+|....|+.+.|+|.+.+ ..+++.
T Consensus        13 ~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~--v~~~~~~~~lL~~~agk~V~Ltv~~~~~~~R~v~   87 (88)
T PF14685_consen   13 GYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQP--VTADANPYRLLEGKAGKQVLLTVNRKPGGARTVV   87 (88)
T ss_dssp             EEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE---BTTB-HHHHHHTTTTSEEEEEEE-STT-EEEEE
T ss_pred             EEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEE--CCCCCCHHHHhcccCCCEEEEEEecCCCCceEEE
Confidence            4567777665        888888875  999999999999  877778889999999999999999865 455543

>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]

Probab=97.74  E-value=3e-05  Score=58.56  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCee
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVE  176 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~  176 (230)
                      .+++|..|.+||||+.|||+.+|+|+++||..
T Consensus        59 ~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~D   90 (124)
T KOG3553|consen   59 KGIYVTRVSEGSPAEIAGLRIHDKILQVNGWD   90 (124)
T ss_pred             ccEEEEEeccCChhhhhcceecceEEEecCce
Confidence            47899999999999999999999999999988

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=97.60  E-value=8.8e-05  Score=70.45  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=49.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      +.+|..|.++|||+.|||.+||+|++|||..   ..+      .....+..+.+.+.|.|..+++.+++.
T Consensus       463 ~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~s---~~l------~~~~~~d~i~v~~~~~~~L~e~~v~~~  523 (558)
T COG3975         463 HEKITFVFPGGPAYKAGLSPGDKIVAINGIS---DQL------DRYKVNDKIQVHVFREGRLREFLVKLG  523 (558)
T ss_pred             eeEEEecCCCChhHhccCCCccEEEEEcCcc---ccc------cccccccceEEEEccCCceEEeecccC
Confidence            4588999999999999999999999999984   111      123567889999999999888877653

>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.00025  Score=65.79  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=63.5

Q ss_pred             CceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCC-CHHHHHHHHhhCCCCeEEEEEEE--CCEEEEEEEEec-CCCC
Q 026990          145 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDN-LLERLAAEGRKNQGNAVPVVIMR--QGGLINLAVTPR-PWQG  219 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~-~~~dl~~~l~~~~g~~v~l~V~R--~g~~~~l~l~p~-~~~g  219 (230)
                      .+..|..|.++|||++|||.+ -|.|++|||..  .+ +-+.|...++.+..+ |+++|+.  --..+.+.+++. .|+|
T Consensus        15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~r--L~~dnd~Lk~llk~~sek-Vkltv~n~kt~~~R~v~I~ps~~wgg   91 (462)
T KOG3834|consen   15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIR--LNKDNDTLKALLKANSEK-VKLTVYNSKTQEVRIVEIVPSNNWGG   91 (462)
T ss_pred             eeEEEEEeecCChHHhcCcchhhhhhheeCccc--ccCchHHHHHHHHhcccc-eEEEEEecccceeEEEEecccccccc
Confidence            456789999999999999988 79999999998  54 344555666655544 8998885  345677888887 6988


Q ss_pred             cceeeEEEEe
Q 026990          220 RGLLGCHFRM  229 (230)
Q Consensus       220 ~g~LG~~~~p  229 (230)
                      . +||+.++.
T Consensus        92 q-llGvsvrF  100 (462)
T KOG3834|consen   92 Q-LLGVSVRF  100 (462)
T ss_pred             c-ccceEEEe
Confidence            7 99998864

>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0011  Score=62.84  Aligned_cols=68  Identities=22%  Similarity=0.246  Sum_probs=60.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+.|..|.+++|+..+|+.+||+|++|||++  +.+..++...+... .+..+.+..+|..+..++.+.+.
T Consensus       399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~--V~n~~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~  467 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKP--VKNLKHLYELIEECSTEDKVAVLDRRSAEDATLEILPE  467 (473)
T ss_pred             EEEEEEeccCCCcccccccCCCEEEEECCEE--eechHHHHHHHHhcCcCceEEEEEecCccceeEEeccc
Confidence            4678899999999999999999999999999  99999999999864 34678888888888888888775

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=96.85  E-value=0.0036  Score=54.34  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             ecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 026990          152 ITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       152 V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      ..++|-.+..|||.||+.+++|+..  ..+.+++..+++. ..-..+.++|.|+|+...+.+
T Consensus       214 gkd~slF~~sglq~GDIavaiNnld--ltdp~~m~~llq~l~~m~s~qlTv~R~G~rhdInV  273 (275)
T COG3031         214 GKDGSLFYKSGLQRGDIAVAINNLD--LTDPEDMFRLLQMLRNMPSLQLTVIRRGKRHDINV  273 (275)
T ss_pred             CCCcchhhhhcCCCcceEEEecCcc--cCCHHHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence            3456788999999999999999999  9999999888875 334679999999998877765

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=96.85  E-value=0.0069  Score=55.29  Aligned_cols=67  Identities=22%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCe---EEEEEEE-CCEE--------EEEEEEe
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNA---VPVVIMR-QGGL--------INLAVTP  214 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~---v~l~V~R-~g~~--------~~l~l~p  214 (230)
                      ..+..+..+|+|..+|+++||.|+++|+.+  +.+++++...+....+..   +.+.+.| ++..        ..+.+.|
T Consensus       131 ~~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~P  208 (375)
T COG0750         131 PVVGEVAPKSAAALAGLRPGDRIVAVDGEK--VASWDDVRRLLVAAAGDVFNLLTILVIRLDGEAHAVAAEIIKSLGLTP  208 (375)
T ss_pred             CeeeecCCCCHHHHcCCCCCCEEEeECCEE--ccCHHHHHHHHHhccCCcccceEEEEEeccceeeeccccceeeEeeec
Confidence            345579999999999999999999999999  999999998887666655   7888889 7766        5566666


Q ss_pred             c
Q 026990          215 R  215 (230)
Q Consensus       215 ~  215 (230)
                      .
T Consensus       209 ~  209 (375)
T COG0750         209 V  209 (375)
T ss_pred             c
Confidence            3

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=96.57  E-value=0.0023  Score=61.86  Aligned_cols=55  Identities=31%  Similarity=0.406  Sum_probs=42.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH---HHHHHHHhhCCCCeEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL---ERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~---~dl~~~l~~~~g~~v~l~V~  202 (230)
                      +++|..|.+||||++-||+.||.|++||.+.  +.++   +.+..+|.-.+|+.++|.-.
T Consensus       430 GIFVaGvqegspA~~eGlqEGDQIL~VN~vd--F~nl~REeAVlfLL~lPkGEevtilaQ  487 (1027)
T KOG3580|consen  430 GIFVAGVQEGSPAEQEGLQEGDQILKVNTVD--FRNLVREEAVLFLLELPKGEEVTILAQ  487 (1027)
T ss_pred             eEEEeecccCCchhhccccccceeEEecccc--chhhhHHHHHHHHhcCCCCcEEeehhh
Confidence            4678999999999999999999999999999  5543   34444444467888877544

>KOG3532 consensus Predicted protein kinase [General function prediction only]

Probab=96.43  E-value=0.0077  Score=59.09  Aligned_cols=54  Identities=17%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +.|-.|.+++||.++.|++||++++|+|.+  +.+..++...++...|. +.+.+.|
T Consensus       400 v~v~tv~~ns~a~k~~~~~gdvlvai~~~p--i~s~~q~~~~~~s~~~~-~~~l~~~  453 (1051)
T KOG3532|consen  400 VKVCTVEDNSLADKAAFKPGDVLVAINNVP--IRSERQATRFLQSTTGD-LTVLVER  453 (1051)
T ss_pred             EEEEEecCCChhhHhcCCCcceEEEecCcc--chhHHHHHHHHHhcccc-eEEEEee
Confidence            568899999999999999999999999999  99999999999876654 3333433

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=96.33  E-value=0.0066  Score=59.79  Aligned_cols=58  Identities=24%  Similarity=0.336  Sum_probs=44.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      |..-|..|.+||||++.| |++||.|++|||..+-..+..++..+++. .|-.|+++|.-
T Consensus       778 p~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKd-aGlsVtLtIip  836 (984)
T KOG3209|consen  778 PESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKD-AGLSVTLTIIP  836 (984)
T ss_pred             CCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHh-cCceEEEEEcC
Confidence            445578899999999977 99999999999999212345677777765 46678888764

>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]

Probab=95.94  E-value=0.029  Score=45.67  Aligned_cols=55  Identities=25%  Similarity=0.319  Sum_probs=41.5

Q ss_pred             eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+|+.+.||+.|++ -||+.||.++++||+.+.-...+...++|+...| .+.+.|+
T Consensus       117 iyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g-svklvvr  172 (207)
T KOG3550|consen  117 IYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG-SVKLVVR  172 (207)
T ss_pred             eEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC-cEEEEEe
Confidence            68999999999987 5799999999999998223345566667776555 4666553

>PF12812 PDZ_1: PDZ-like domain

Probab=95.79  E-value=0.036  Score=40.10  Aligned_cols=45  Identities=16%  Similarity=0.094  Sum_probs=39.5

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ  193 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~  193 (230)
                      .++.....++++...|+..|.+|.+||+++  +.++++|.+.++.-+
T Consensus        32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kp--t~~Ld~f~~vvk~ip   76 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGGISKGFIITSVNGKP--TPDLDDFIKVVKKIP   76 (78)
T ss_pred             EEEEEecCCChhhhCCCCCCeEEEeECCcC--CcCHHHHHHHHHhCC
Confidence            556677889999987799999999999999  999999999987643

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=95.37  E-value=0.018  Score=56.75  Aligned_cols=54  Identities=20%  Similarity=0.269  Sum_probs=40.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH--HHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~--dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +++|.+|.|||.|+++||+.||.|++|||+.  +.++.  ...++|.+  +..+.++|+.
T Consensus       563 gifV~~V~pgskAa~~GlKRgDqilEVNgQn--fenis~~KA~eiLrn--nthLtltvKt  618 (1283)
T KOG3542|consen  563 GIFVAEVFPGSKAAREGLKRGDQILEVNGQN--FENISAKKAEEILRN--NTHLTLTVKT  618 (1283)
T ss_pred             eeEEeeecCCchHHHhhhhhhhhhhhccccc--hhhhhHHHHHHHhcC--CceEEEEEec
Confidence            4679999999999999999999999999999  55443  33344543  3456666654

>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]

Probab=95.35  E-value=0.029  Score=54.83  Aligned_cols=81  Identities=23%  Similarity=0.290  Sum_probs=55.5

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhhCCC-CeEEEEEEECCEEEEEEEEecCCCCc
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQG-NAVPVVIMRQGGLINLAVTPRPWQGR  220 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g-~~v~l~V~R~g~~~~l~l~p~~~~g~  220 (230)
                      .|.++|.....++||++.| |..||+|++|||.. ++ --+..-+.++++.++ ..|+++|.+.--..++.+.-  -.-+
T Consensus       672 LPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVG-LPLstcQs~Ik~~KnQT~VkltiV~cpPV~~V~I~R--Pd~k  748 (829)
T KOG3605|consen  672 LPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVG-LPLSTCQSIIKGLKNQTAVKLNIVSCPPVTTVLIRR--PDLR  748 (829)
T ss_pred             chHHHHHhcccCChhhhcCCccccceeEeecCceecc-ccHHHHHHHHhcccccceEEEEEecCCCceEEEeec--ccch
Confidence            4777888889999999988 89999999999988 22 235666778876554 45777777654444443321  1234


Q ss_pred             ceeeEEE
Q 026990          221 GLLGCHF  227 (230)
Q Consensus       221 g~LG~~~  227 (230)
                      +.|||.+
T Consensus       749 yQLGFSV  755 (829)
T KOG3605|consen  749 YQLGFSV  755 (829)
T ss_pred             hhcccee
Confidence            5566654

>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]

Probab=95.12  E-value=0.063  Score=48.33  Aligned_cols=58  Identities=21%  Similarity=0.303  Sum_probs=45.1

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      -|-.+|..|..++||++-| ++.||.|+.|||+.+.-.+-.++...++...+ +|.+.+-
T Consensus        29 CPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~-eV~IhyN   87 (429)
T KOG3651|consen   29 CPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLN-EVKIHYN   87 (429)
T ss_pred             CCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhcc-ceEEEeh
Confidence            3678899999999999977 89999999999999333456677788876554 5666654

>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]

Probab=94.70  E-value=0.051  Score=52.93  Aligned_cols=67  Identities=24%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      ++|.++...+-|++ -+|+.||+|++|||.-...-++.+...++..+.| ++.+.|+|+.+..-+.+.+
T Consensus       221 IFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~G-KL~lvVlRD~~qtLiNiP~  288 (1027)
T KOG3580|consen  221 IFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRG-KLQLVVLRDSQQTLINIPS  288 (1027)
T ss_pred             hhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccC-ceEEEEEecCCceeeecCC
Confidence            44566666665554 6799999999999987334568888888877776 5889999987766666655

>KOG3209 consensus WW domain-containing protein [General function prediction only]

Probab=94.49  E-value=0.086  Score=52.24  Aligned_cols=60  Identities=22%  Similarity=0.335  Sum_probs=46.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~  204 (230)
                      .|..|.+|.+++||++-| |..||+|+.|||.-+--.+-.++.+.++. ..|..|.|++-|+
T Consensus       371 efLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcRg  432 (984)
T KOG3209|consen  371 EFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCRG  432 (984)
T ss_pred             ceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEecC
Confidence            578899999999999988 79999999999987111234455555554 4689999999885

>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]

Probab=94.37  E-value=0.066  Score=54.39  Aligned_cols=55  Identities=24%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++|..|.+|+|+.-. |++||+|+.|||.++.-..|+.+..+++..+ ..|.++|-+
T Consensus        77 viVr~VT~GGps~GK-L~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~q  131 (1298)
T KOG3552|consen   77 VIVRFVTEGGPSIGK-LQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQ  131 (1298)
T ss_pred             eEEEEecCCCCcccc-ccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEec
Confidence            578899999999875 9999999999999933345888888888754 357777766

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=93.17  E-value=0.25  Score=43.89  Aligned_cols=60  Identities=18%  Similarity=0.307  Sum_probs=48.7

Q ss_pred             CCCceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          143 RRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       143 ~~p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .+|+.+|....||+-|+..|| .+.|.|++|||+.+.-++++++...+-.+. ..+.|+|+-
T Consensus       192 kvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVkP  252 (358)
T KOG3606|consen  192 KVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVKP  252 (358)
T ss_pred             ccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEecc
Confidence            579999999999999999997 669999999999955578999988765432 346666663

>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]

Probab=92.85  E-value=0.34  Score=48.11  Aligned_cols=62  Identities=23%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             cCCCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          142 IRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       142 ~~~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .+.++.+|..|.+.-+  +- |..||+|+++||+-  +..+.||....      .+...|.|+|..++++++.
T Consensus       768 ~~~ql~~ishv~~~~~--ki-l~~gdiilsvngk~--itr~~dl~d~~------eid~~ilrdg~~~~ikipt  829 (955)
T KOG1421|consen  768 IPRQLYVISHVRPLLH--KI-LGVGDIILSVNGKM--ITRLSDLHDFE------EIDAVILRDGIEMEIKIPT  829 (955)
T ss_pred             CcceEEEEEeeccCcc--cc-cccccEEEEecCeE--Eeeehhhhhhh------hhheeeeecCcEEEEEecc
Confidence            3457788999977655  33 99999999999999  88888887632      5778899999999888754

>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]

Probab=90.92  E-value=0.44  Score=43.81  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             cCCCceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          142 IRRPFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       142 ~~~p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      ...| ++|..+.++-.|+..|+ =.||-|++|||+.+..-..+++..+|++ .|+.|.++|.
T Consensus        78 Hn~P-vviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRN-AGdeVtlTV~  137 (505)
T KOG3549|consen   78 HNLP-VVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRN-AGDEVTLTVK  137 (505)
T ss_pred             cCcc-EEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHh-cCCEEEEEeH
Confidence            4456 78899999999999885 6899999999999223356788888865 6778888886

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=90.92  E-value=0.42  Score=49.68  Aligned_cols=50  Identities=24%  Similarity=0.322  Sum_probs=37.8

Q ss_pred             EEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEE
Q 026990          148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVV  200 (230)
Q Consensus       148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~  200 (230)
                      .|..|.++|||..||+++||.|+.+||..  +.  ...++.+++... |..+.+.
T Consensus       661 ~v~sv~egsPA~~agls~~DlIthvnge~--v~gl~H~ev~~Lll~~-gn~v~~~  712 (1205)
T KOG0606|consen  661 SVGSVEEGSPAFEAGLSAGDLITHVNGEP--VHGLVHTEVMELLLKS-GNKVTLR  712 (1205)
T ss_pred             eeeeecCCCCccccCCCccceeEeccCcc--cchhhHHHHHHHHHhc-CCeeEEE
Confidence            46789999999999999999999999998  54  456666666543 3344443

>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]

Probab=89.39  E-value=0.7  Score=44.50  Aligned_cols=57  Identities=23%  Similarity=0.406  Sum_probs=46.4

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .++|..+..|+.+.+.| |+.||.|..+||+.+......++..++....| .++++|.-
T Consensus       147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkiiP  204 (542)
T KOG0609|consen  147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKIIP  204 (542)
T ss_pred             ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEcc
Confidence            36788899999999988 58899999999999445678999999987665 67777653

>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]

Probab=88.26  E-value=0.75  Score=47.35  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=44.3

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .-+++|.+|.+|++|+.-| |++||.+++|||.. +++ +-+....++. ..|..|.+.|...|
T Consensus       959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGi-sQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen  959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGI-SQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred             ccceEEEEeccCCccccccccccCceeeeecCcccccc-cHHHHHHHHh-ccCCeEEEehhhhh
Confidence            3578999999999998876 89999999999998 433 2333444443 45677888886543

>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]

Probab=84.94  E-value=1.1  Score=41.88  Aligned_cols=58  Identities=22%  Similarity=0.359  Sum_probs=41.4

Q ss_pred             CCCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          143 RRPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       143 ~~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+| +.|..+.+|-.|+++| |-.||.|++|||....-.+.++....|+. .|+.|.+.|+
T Consensus       109 kMP-IlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKr-aGkeV~levK  167 (506)
T KOG3551|consen  109 KMP-ILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKR-AGKEVLLEVK  167 (506)
T ss_pred             CCc-eehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHh-hCceeeeeee
Confidence            345 6788899999998876 78999999999988222345555566654 5677666554

>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]

Probab=83.64  E-value=1.8  Score=40.48  Aligned_cols=44  Identities=16%  Similarity=0.180  Sum_probs=34.5

Q ss_pred             ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhh
Q 026990          146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRK  191 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~  191 (230)
                      ++.|.+|...||+.. -||.+||+|.++||-+  +.+.++-.+.++.
T Consensus       221 gV~Vtev~~~Spl~gprGL~vgdvitsldgcp--V~~v~dW~ecl~t  265 (484)
T KOG2921|consen  221 GVTVTEVPSVSPLFGPRGLSVGDVITSLDGCP--VHKVSDWLECLAT  265 (484)
T ss_pred             eEEEEeccccCCCcCcccCCccceEEecCCcc--cCCHHHHHHHHHh
Confidence            478999999999843 4999999999999999  6665555555543

>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]

Probab=80.21  E-value=3.4  Score=39.81  Aligned_cols=58  Identities=16%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCee-CCCCCHHHHHHHHhh--CCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVE-AGDNLLERLAAEGRK--NQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~-~~v~~~~dl~~~l~~--~~g~~v~l~V~R~  204 (230)
                      +++|.++.+++.-+.-| |.+||.|++||.+. .|..+- +....|+.  +...++.++|-..
T Consensus       278 gIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd-~AVrvLREaV~~~gPi~ltvAk~  339 (626)
T KOG3571|consen  278 GIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSND-QAVRVLREAVSRPGPIKLTVAKC  339 (626)
T ss_pred             ceEEeeeccCceeeccCccCccceEEEeeecchhhcCch-HHHHHHHHHhccCCCeEEEEeec
Confidence            47788999887665555 99999999999998 333333 33344443  1223677777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	4e-08
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	3e-06
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	3e-06
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	1e-05
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	6e-05
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	7e-05
4fgm_A	597	Aminopeptidase N family protein; structural genomi	1e-04
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	1e-04
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	3e-04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	4e-04
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	5e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	5e-04
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	7e-04
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	6e-04

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206
            V++ +   S A+  GLQ GD+++                   R N G ++ + I RQG 
Sbjct: 6   PVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQ--WVTFVMLVRDNPGXSLALEIERQGS 63

Query: 207 LINLAVTPRPWQGRG 221
            ++L + P    G G
Sbjct: 64  PLSLTLIPESXPGNG 78

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 37  VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 90

Query: 205 GGLINLAVTPRPWQGRGLLG 224
              + L VTP   +G G   
Sbjct: 91  RETLTLYVTPEVTEGGGWTM 110

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
             + E+   SP+   G+Q GD ++K     +     L E +         + + + + R 
Sbjct: 37  IYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVL------TESPLLLEVRRG 90

Query: 205 GGLINLAVTPRPWQGRG 221
              +  ++ P    G G
Sbjct: 91  NDDLLFSIAPEVVMGGG 107

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 148 VIDEITDASPAAEDGLQ-LGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ-- 204
            + E+   SPAA  GL+   D ++   TV      L  L      ++   + + +     
Sbjct: 115 HVLEVESNSPAALAGLRPHSDYIIGADTVMNESEDLFSLI---ETHEAKPLKLYVYNTDT 171

Query: 205 GGLINLAVTPRP-WQGRGLLGCHFR 228
                + +TP   W G G LGC   
Sbjct: 172 DNCREVIITPNSAWGGEGSLGCGIG 196

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 258 VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 311

Query: 205 GGLINLAVTP 214
              + L VTP
Sbjct: 312 RETLTLYVTP 321

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A I E+   +PA   GL+  D ++     +V + +++ + +       + + + +V+ R 
Sbjct: 256 AYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK------RESTLNMVVRRG 309

Query: 205 GGLINLAVTP 214
              I + V P
Sbjct: 310 NEDIMITVIP 319

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 127 AVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKF-GTVEAGDNLLERL 185
           A  + +                +  +     A   GL  GD+++          ++   L
Sbjct: 478 ASEQPARVNFGAKYKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRIL 537

Query: 186 AAEGRKNQGNAVPVVIMRQGGLINLAVTPRP 216
               R   G+ V +   R+  L+ L +T + 
Sbjct: 538 E---RYIPGDTVTIHAFRRDELMTLELTWQE 565

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            V++E++   PAA  G+Q+ D ++        +    ++++A       G+ +PVV+MR 
Sbjct: 246 IVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVA---EIRPGSVIPVVVMRD 302

Query: 205 GGLINLAVT 213
              + L VT
Sbjct: 303 DKQLTLQVT 311

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A + E+   S +A+ G++ GD +       + +   L  R+A       G  V + ++R 
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTE---PGTKVKLGLLRN 321

Query: 205 GGLINLAVT 213
           G  + + VT
Sbjct: 322 GKPLEVEVT 330

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A + E+   S +A+ G++ GD +       + +   L  R+A       G  V + ++R 
Sbjct: 265 AFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTE---PGTKVKLGLLRN 321

Query: 205 GGLINLAVT 213
           G  + + VT
Sbjct: 322 GKPLEVEVT 330

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A I E+     AA  G+  G  V K     + + D L+  + +   K  G  V +     
Sbjct: 244 AKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRS---KAPGATVALTFQDP 300

Query: 205 GG 206
            G
Sbjct: 301 SG 302

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 39.6 bits (93), Expect = 5e-04
 Identities = 12/69 (17%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A + ++   S AA+ G++ GD +       + +   L  ++        G+ + + ++R 
Sbjct: 288 AFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMP---VGSKLTLGLLRD 344

Query: 205 GGLINLAVT 213
           G  +N+ + 
Sbjct: 345 GKQVNVNLE 353

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 15/98 (15%), Positives = 35/98 (35%), Gaps = 5/98 (5%)

Query: 116 LGTVQSASFNNAVPRNSPAAMDVDVIIRRPFAVIDEITDASPAAEDGLQLGDQVLKFGTV 175
           L        +++   N     ++    +    V++ +   +PAA+ GL+ GD ++     
Sbjct: 354 LQQSSQNQVDSSSIFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQ 413

Query: 176 EAGD-NLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV 212
              +   L ++           + + I R    I L +
Sbjct: 414 AVKNIAELRKVLDSKPS----VLALNIQRGDSTIYLLM 447

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
           A++ ++   SPA   GL+ GD + +     +     +   ++       G+ V +++ R 
Sbjct: 284 ALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLR---VGSTVKIIVERD 340

Query: 205 GGLINLAVT 213
              + L+  
Sbjct: 341 NKPLTLSAV 349

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	99.54
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	99.48
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	99.47
2kl1_A	94	YLBL protein; structure genomics, structural genom	99.43
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	99.43
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.39
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	99.35
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	99.33
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	99.32
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	99.3
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	99.29
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.28
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.27
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	99.24
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	99.23
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.23
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.22
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.22
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.21
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.2
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.2
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.18
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	99.15
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.14
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.14
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.14
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.13
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.12
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.12
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.11
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.11
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.1
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.1
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.09
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.08
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.08
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.08
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.07
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.07
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.07
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.06
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.06
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.06
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.06
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.05
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.05
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	99.05
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.05
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.04
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.04
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.04
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.04
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.04
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.04
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.04
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.03
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.03
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.03
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.02
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.02
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.02
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.02
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.02
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.02
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.02
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.02
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.01
2ego_A	96	General receptor for phosphoinositides 1- associat	99.01
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.01
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.01
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.01
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.01
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	99.0
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.0
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.0
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	98.99
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	98.99
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.99
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	98.98
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	98.98
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	98.98
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	98.98
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	98.97
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	98.97
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	98.97
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	98.97
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	98.96
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	98.96
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	98.96
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	98.96
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	98.96
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	98.96
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	98.95
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	98.95
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	98.95
4amh_A	106	Disks large homolog 1; permutation, protein foldin	98.95
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	98.95
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	98.95
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	98.95
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.95
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.94
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	98.94
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	98.94
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	98.94
2d90_A	102	PDZ domain containing protein 1; structural genomi	98.94
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.94
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	98.94
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	98.93
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	98.93
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	98.93
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	98.93
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	98.93
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.93
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	98.93
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	98.93
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.92
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	98.92
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	98.92
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	98.92
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	98.92
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	98.92
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	98.91
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	98.91
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	98.9
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	98.9
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	98.9
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	98.9
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	98.9
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	98.89
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	98.89
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	98.88
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	98.88
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	98.88
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.88
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	98.87
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	98.87
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	98.87
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	98.87
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	98.86
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	98.86
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	98.86
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	98.86
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	98.85
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.85
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	98.84
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.83
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	98.83
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	98.83
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	98.83
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	98.83
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	98.83
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	98.82
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	98.82
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	98.82
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	98.81
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.81
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	98.8
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	98.8
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	98.8
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	98.79
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	98.79
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	98.79
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	98.79
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	98.78
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	98.78
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	98.78
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	98.78
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	98.77
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	98.77
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.75
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	98.74
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	98.74
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	98.74
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	98.73
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	98.73
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	98.73
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	98.73
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	98.72
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	98.71
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	98.71
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	98.71
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	98.67
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	98.65
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	98.63
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	98.63
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.63
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.59
3k50_A	403	Putative S41 protease; structural genomics, joint	98.58
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	98.52
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.47
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.44
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	98.42
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	97.79
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	98.4
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	98.27
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.24
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.22
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	98.07
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.0
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	97.54
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	97.51
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	91.99
3m48_A	33	General control protein GCN4; leucine zipper, synt	91.45
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	90.99
1uo4_A	34	General control protein GCN4; four helix bundle, c	89.25
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	88.93
2bni_A	34	General control protein GCN4; four helix bundle, a	88.77
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	86.09
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	84.15
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	83.75
2hy6_A	34	General control protein GCN4; protein design, para	83.64
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	83.36

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=99.54  E-value=7.1e-14  Score=104.20  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=72.3

Q ss_pred             CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC--CCc
Q 026990          144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW--QGR  220 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~--~g~  220 (230)
                      ..+++|..|.++|||++ ||++||+|++|||.+  +.+|.++..++.. ..|+.+.++|.|+|+..++++++..|  .++
T Consensus         6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~   82 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNA--FKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTAIDKKGT   82 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBC--CSSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEECSTTCC
T ss_pred             CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEecCCCCCC
Confidence            35789999999999995 999999999999999  9999999999986 46899999999999999999988755  367


Q ss_pred             ceeeEEEE
Q 026990          221 GLLGCHFR  228 (230)
Q Consensus       221 g~LG~~~~  228 (230)
                      +.||+.+.
T Consensus        83 ~~iGi~~~   90 (100)
T 3i18_A           83 PGIGITLV   90 (100)
T ss_dssp             EECSEEEG
T ss_pred             cEEeEEEe
Confidence            78998764

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=99.48  E-value=1.5e-13  Score=100.09  Aligned_cols=80  Identities=25%  Similarity=0.398  Sum_probs=68.9

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC--CCC--cce
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP--WQG--RGL  222 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~--~~g--~g~  222 (230)
                      ++|..|.++|||++|||++||+|++|||.+  +.+|.++...+....++.+.++|.|+|+.+++.+++..  +.+  .|+
T Consensus         6 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~~g~   83 (91)
T 2zpm_A            6 PVLENVQPNSAASXAGLQAGDRIVXVDGQP--LTQWVTFVMLVRDNPGXSLALEIERQGSPLSLTLIPESXPGNGXAIGF   83 (91)
T ss_dssp             CBCSEECTTSHHHHTTCCTTCEEEEETTEE--CCCHHHHHHHHHHCTTCCEEEEEEETTEEEEEEECCEEECCSSSCEEE
T ss_pred             eEEEEECCCChHHhcCCCCCCEEEEECCeE--cCCHHHHHHHHhcCCCCeEEEEEEECCeEEEEEEEEeeecCCCceEEE
Confidence            568899999999999999999999999999  99999999999877788999999999999998888753  223  256


Q ss_pred             eeEEEE
Q 026990          223 LGCHFR  228 (230)
Q Consensus       223 LG~~~~  228 (230)
                      +||.+.
T Consensus        84 ~g~~~~   89 (91)
T 2zpm_A           84 VGIEPX   89 (91)
T ss_dssp             CCEECC
T ss_pred             EEEEEe
Confidence            887654

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=99.47  E-value=1.4e-14  Score=106.69  Aligned_cols=79  Identities=16%  Similarity=0.218  Sum_probs=69.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecC---CCCcc
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRP---WQGRG  221 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~---~~g~g  221 (230)
                      +++|..|.++|||++ ||++||+|++|||.+  +.++.++..++... +|+++.|+|.|+|+.+++++++..   +.+++
T Consensus         2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~gr~   78 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-KIEVGDKIISADGKN--YQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRA   78 (91)
T ss_dssp             CSSCCCCCCSSCCSS-CCCSSCEEEEETTBC--CSSHHHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCCTTCTTSC
T ss_pred             ceEEEEECCCChHHH-cCCCCCEEEEECCEE--CCCHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEeccCCCCCcc
Confidence            356888999999999 999999999999999  99999999999875 689999999999999999998863   45677


Q ss_pred             eeeEEE
Q 026990          222 LLGCHF  227 (230)
Q Consensus       222 ~LG~~~  227 (230)
                      .||+.+
T Consensus        79 ~~~~~~   84 (91)
T 2kjp_A           79 GIGVSL   84 (91)
T ss_dssp             SCCSCC
T ss_pred             eeEEee
Confidence            888754

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=99.43  E-value=3.4e-13  Score=99.55  Aligned_cols=80  Identities=20%  Similarity=0.260  Sum_probs=69.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecCC---CCc
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPW---QGR  220 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~~---~g~  220 (230)
                      .+++|..|.++|||++ ||++||+|++|||.+  +.++.++..++... .|+.+.|+|.|+|+.+++++++..|   .++
T Consensus         5 ~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~~~~~~~   81 (94)
T 2kl1_A            5 KGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQP--INTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFPHHPNQ   81 (94)
T ss_dssp             CCEECCCCCTTSTTBT-TBCTTCEEEEETTBC--CCCHHHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBCSSCTTC
T ss_pred             CcEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeCCCCCCC
Confidence            3578999999999999 999999999999999  99999999999875 6899999999999999999988643   456


Q ss_pred             ceeeEEE
Q 026990          221 GLLGCHF  227 (230)
Q Consensus       221 g~LG~~~  227 (230)
                      ..+|+.+
T Consensus        82 ~~~~~~~   88 (94)
T 2kl1_A           82 IGLGVTL   88 (94)
T ss_dssp             BCCSCC-
T ss_pred             cEEEEEe
Confidence            7777654

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=99.43  E-value=8.5e-13  Score=97.64  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEEECC--EEEEEEEEecCCC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIMRQG--GLINLAVTPRPWQ  218 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~-g~~v~l~V~R~g--~~~~l~l~p~~~~  218 (230)
                      .++|.+|.++|||++|||++||+|++|||++  +.+|+++...+.... ++.+.++|.|+|  ...++++....|.
T Consensus         3 ~p~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~   76 (95)
T 3id1_A            3 RPVVGEIAANSIAAEAQIAPGTELKAVDGIE--TPDWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWA   76 (95)
T ss_dssp             CCBEEEECTTSHHHHTTCCTTCEEEEETTEE--CSSHHHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCC
T ss_pred             CCEEEeeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccc
Confidence            4689999999999999999999999999999  999999999887654 478999999987  4577788777773

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.39  E-value=6.8e-13  Score=111.30  Aligned_cols=82  Identities=24%  Similarity=0.366  Sum_probs=72.6

Q ss_pred             CceEEEEecCCChhhhcCCCC-CCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC--EEEEEEEEec-CCCCc
Q 026990          145 PFAVIDEITDASPAAEDGLQL-GDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG--GLINLAVTPR-PWQGR  220 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~-GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g--~~~~l~l~p~-~~~g~  220 (230)
                      .+++|..|.++|||++|||++ ||+|++||| .  +.+++++..++....++++.++|.|++  ..++++++|. .|++.
T Consensus       112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing-~--v~~~~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p~~~~~g~  188 (209)
T 3rle_A          112 NVWHVLEVESNSPAALAGLRPHSDYIIGADT-V--MNESEDLFSLIETHEAKPLKLYVYNTDTDNCREVIITPNSAWGGE  188 (209)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTTEEEEEESS-C--CCSSSCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECCCTTSSSS
T ss_pred             cceEEEEeCCCChHHHCCCCCCCCEEEECCC-E--eCCHHHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEecCCCCCc
Confidence            567899999999999999999 999999999 4  788889999998878899999999964  5688999997 69889


Q ss_pred             ceeeEEEEe
Q 026990          221 GLLGCHFRM  229 (230)
Q Consensus       221 g~LG~~~~p  229 (230)
                      |+|||.+.+
T Consensus       189 g~lG~~~~~  197 (209)
T 3rle_A          189 GSLGCGIGY  197 (209)
T ss_dssp             SSSCEEEEC
T ss_pred             eeeeEEecC
Confidence            999999863

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=99.35  E-value=6.6e-12  Score=98.44  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=63.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||+ |||++||+|++|||.+  +.++.++..++... .|+.+.++|.|+|+.+++++++.
T Consensus        57 ~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  125 (134)
T 2l97_A           57 SGVIVRSVQSNMPAN-GHLEKYDVITKVDDKE--IASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLN  125 (134)
T ss_dssp             SCEEEEECSTTSGGG-TTSCSSCEEEEETTEE--CCCHHHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECC
T ss_pred             CCEEEEEECCCCchH-HCCCCCCEEEEECCEE--cCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEc
Confidence            357899999999999 9999999999999999  99999999988865 78999999999999999999885

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.33  E-value=6e-12  Score=91.28  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=58.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      ++.|..+.|+|||++|||++||+|++|||.+  +.+|.++..++.. ..++.+.++|.|+|+.+++.++
T Consensus        20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~   86 (87)
T 2i6v_A           20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEeCCCCCHHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence            5678888889999999999999999999999  9999999988875 4688999999999998877765

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=99.32  E-value=3.1e-12  Score=96.77  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=62.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ  218 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~  218 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++..++.  .++.+.++|.|+|+.+++.+++..+.
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~~~  104 (112)
T 2p3w_A           35 SGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRP--LVDSSELQEAVL--TESPLLLEVRRGNDDLLFSIAPEVVM  104 (112)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHH--HCSSEEEEEEETTEEEEEEECCEEEC
T ss_pred             CCeEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHh--CCCeEEEEEEECCEEEEEEEEEeeeC
Confidence            46889999999999999999999999999999  999999998884  46789999999999999999886443

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=99.30  E-value=1.2e-11  Score=96.13  Aligned_cols=80  Identities=19%  Similarity=0.225  Sum_probs=67.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec-CCCCcce
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR-PWQGRGL  222 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~-~~~g~g~  222 (230)
                      .+++|..|.++|||++| |++||+|++|||.+  +.+|.++..++.. ..++.+.|+| |+|+ +++++.+. .+.+.+.
T Consensus        25 ~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~--v~~~~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l~~~~~~~~~~~   99 (125)
T 2hga_A           25 DGVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITT-DQGT-FHLKTGRNPNNSSRAY   99 (125)
T ss_dssp             CCEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEE-TTEE-EEEECCBCSSSCCSCB
T ss_pred             CceEEEEECCCChHHHh-cCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEE-ECCE-EEEEEeccCCCCCceE
Confidence            56889999999999999 99999999999999  9999999999885 5788999999 9988 55555443 2455678


Q ss_pred             eeEEEEe
Q 026990          223 LGCHFRM  229 (230)
Q Consensus       223 LG~~~~p  229 (230)
                      |||.+.+
T Consensus       100 lGi~~~~  106 (125)
T 2hga_A          100 MGIRTSN  106 (125)
T ss_dssp             CCEEEEC
T ss_pred             EEEEecC
Confidence            9987653

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=99.29  E-value=1.7e-11  Score=92.71  Aligned_cols=68  Identities=28%  Similarity=0.314  Sum_probs=62.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRP  216 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~  216 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++...+..  ++.+.++|.|+|+.+++.+++..
T Consensus        35 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~  102 (113)
T 2pzd_A           35 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV  102 (113)
T ss_dssp             SCEEEEEEBTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence            56889999999999999999999999999999  9999999998876  57899999999999999998863

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.28  E-value=2.7e-11  Score=91.36  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=62.6

Q ss_pred             CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      ..++|..|.++|||+++|| ++||+|++|||.+  +.+  ++++..++....|+.+.++|.|+|+..++.+.+.
T Consensus        26 ~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~   97 (112)
T 1qau_A           26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT   97 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCSSSEEEEEEECCTTSEEEEEEE
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCcEEEEEEeCCcccceEeeee
Confidence            4688999999999999998 9999999999999  777  9999999988778999999999998888887765

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.27  E-value=1.8e-11  Score=88.90  Aligned_cols=67  Identities=27%  Similarity=0.321  Sum_probs=50.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.... ..+.++|.|+|+..++.++|
T Consensus        23 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~g~~~~~~v~p   92 (92)
T 3cyy_A           23 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSK-GKLKMVVQRDERATLLNVPD   92 (92)
T ss_dssp             EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTT-TEEEEEEEC-----------
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CcEEEEEEeCCceeeeeCCC
Confidence            457899999999999999 99999999999999  88  9999998887644 48999999999888777754

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=99.24  E-value=2.9e-11  Score=90.72  Aligned_cols=66  Identities=14%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      ++.|..+.|+|||++|||++||+|++|||.+  +.+|.++..++.. ..++.+.++|.|+|+.+++.++
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~--v~~~~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~  104 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ  104 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEE--TTSTTHHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence            4557778888888999999999999999999  9999999988875 5688999999999998877765

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=99.23  E-value=2.4e-11  Score=101.87  Aligned_cols=83  Identities=24%  Similarity=0.330  Sum_probs=69.3

Q ss_pred             CceEEEEecCCChhhhcCCCCC-CEEEEECCeeCCCCCHHHHHHHH-hhCCCCeEEEEEEECC--EEEEEEEEec-CCCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLG-DQVLKFGTVEAGDNLLERLAAEG-RKNQGNAVPVVIMRQG--GLINLAVTPR-PWQG  219 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~G-D~Iv~Ing~~~~v~~~~dl~~~l-~~~~g~~v~l~V~R~g--~~~~l~l~p~-~~~g  219 (230)
                      .+++|..|.++|||++|||++| |+|++|||++  +.+|.++...+ ....++.+.++|.|++  +..++++.|. .|.+
T Consensus        16 ~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~p~~~~~~   93 (209)
T 3rle_A           16 EGYHVLRVQENSPGHRAGLEPFFDFIVSINGSR--LNKDNDTLKDLLKANVEKPVKMLIYSSKTLELRETSVTPSNLWGG   93 (209)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTTEEEEEETTEE--CCSSSSHHHHHHHHTTTSCEEEEEEETTTCCEEEEEECCCSSSSS
T ss_pred             CEEEEEEECCCCHHHHCCCCcCCeEEEEECCEE--CcCHHHHHHHHHhcCCCCEEEEEEEecCCceEEEEEEcccccccc
Confidence            4689999999999999999999 9999999999  88888876544 4567899999999964  6677777775 5777


Q ss_pred             cceeeEEEEe
Q 026990          220 RGLLGCHFRM  229 (230)
Q Consensus       220 ~g~LG~~~~p  229 (230)
                      .+.||+.+.+
T Consensus        94 ~~~lGi~~~~  103 (209)
T 3rle_A           94 QGLLGVSIRF  103 (209)
T ss_dssp             SSSSCEEEEE
T ss_pred             cCccceEEee
Confidence            7889988763

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.23  E-value=1.8e-11  Score=88.68  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=53.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCC--CCHHHHHHHHhh-CCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~-~~g~~v~l~V~R~g~  206 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +  .++.++..++.. ..++.+.++|.|+|+
T Consensus        28 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   90 (90)
T 2eaq_A           28 PGIFVASVEAGSPAEFSQLQVDDEIIAINNTK--FSYNDSKEWEEAMAKAQETGHLVMDVRRYGK   90 (90)
T ss_dssp             TEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CCTTCHHHHHHHHHHHHHHTEEEEEEEEEC-
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhcCCCCEEEEEEEeCCC
Confidence            46889999999999999999999999999999  8  899999998875 367899999999763

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.22  E-value=3.6e-11  Score=89.84  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+... +..+.++|.|++....+.++|..|
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~p~~w  105 (105)
T 2awx_A           33 NSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVS--LEEVTHEEAVTALKNT-SDFVYLKVAKPTSMYISRHHHHHH  105 (105)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHSC-CSEEEEEEECCCC-----------
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCCCCCCccccccCC
Confidence            368899999999999999 99999999999999  64  477777777654 789999999999999999999877

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.22  E-value=1.1e-11  Score=90.13  Aligned_cols=60  Identities=15%  Similarity=0.130  Sum_probs=53.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH--HHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE--RLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~--dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++.  ++..++.. .++++.++|.|+|+..
T Consensus        28 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~~   89 (91)
T 2pkt_A           28 PLAISRVTPGSKAALANLCIGDVITAIDGEN--TSNMTHLEAQNRIKG-CTDNLTLTVARSEHES   89 (91)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEEECCCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccc
Confidence            5789999999999999999999999999999  77666  88888877 8899999999988653

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.21  E-value=5.9e-11  Score=85.52  Aligned_cols=58  Identities=10%  Similarity=0.171  Sum_probs=53.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.+  +.++..++.... +.+.++|.|+++
T Consensus        27 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~   86 (87)
T 2pa1_A           27 PIMVTKVAERGKAKDADLRPGDIIVAINGES--AEGMLHAEAQSKIRQSP-SPLRLQLDRITS   86 (87)
T ss_dssp             EEEEEEECSSSHHHHTTCCTTCEEEEETTEE--STTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred             CEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence            5789999999999999999999999999999  777  899999998765 789999999874

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.20  E-value=4.5e-11  Score=94.32  Aligned_cols=68  Identities=16%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.  ++.++..++....|+.+.|+|.|+|+..++.+..
T Consensus        64 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~v~~~~  133 (139)
T 2vz5_A           64 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWD--MTMVTHDQARKRLTKRSEEVVRLLVTRQSLQKAVQQSM  133 (139)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHCCTTCSEEEEEEEECC-------CC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCEEEEEEEECCEEEEEEEee
Confidence            46889999999999999999999999999999  76  6999999998777899999999999887776654

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.20  E-value=2.9e-11  Score=88.00  Aligned_cols=60  Identities=20%  Similarity=0.319  Sum_probs=51.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ++++|..|.++|||++|||++||+|++|||.+  +.  ++.++..++... ++.+.++|.|++..
T Consensus        27 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   88 (91)
T 2vsp_A           27 PGSFIKEVQKGGPADLAGLEDEDVIIEVNGVN--VLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ   88 (91)
T ss_dssp             SCCBC-CCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence            46789999999999999999999999999999  77  899999999876 88999999998764

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.18  E-value=1.9e-11  Score=89.72  Aligned_cols=59  Identities=17%  Similarity=0.217  Sum_probs=53.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      +++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+... ++.+.++|.|+++.
T Consensus        31 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~   91 (96)
T 2v90_A           31 GQFLWEVDPGLPAKKAGMQAGDRLVAVAGES--VEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD   91 (96)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred             CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence            5889999999999999999999999999999  776  89999988875 88999999998754

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=99.15  E-value=1.4e-10  Score=104.46  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=65.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++...+.. .+|+++.|+|.|+|+.+++++++..+
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  334 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS  334 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEECEETTEE--CSCHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEEC
T ss_pred             ceEEEEEeccCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccc
Confidence            46899999999999999999999999999999  9999999999976 47999999999999999999988643

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.14  E-value=1.2e-10  Score=83.92  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=51.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++...+... ++.+.++|.|++.
T Consensus        28 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~   87 (88)
T 2uzc_A           28 PLTISSLKDGGKAAQANVRIGDVVLSIDGIN--AQGMTHLEAQNKIKGC-TGSLNMTLQRESD   87 (88)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred             CeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence            4789999999999999999999999999999  7766  7888777654 7899999999874

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.14  E-value=7.4e-11  Score=86.59  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=54.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..++.. .++.+.++|.|++..
T Consensus        32 ~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~   94 (97)
T 2jil_A           32 RPVVITSVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEAALLIEYDVSE   94 (97)
T ss_dssp             EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence            357899999999999999 99999999999999  777  9999999987 788999999998754

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.14  E-value=3.4e-11  Score=92.84  Aligned_cols=68  Identities=22%  Similarity=0.222  Sum_probs=60.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.++.++..++....++.+.|+|.|+|+.++....+
T Consensus        48 ~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~  116 (124)
T 1wh1_A           48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARPELQLDEGWMD  116 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEECSSCCCCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCHHHHHHHHHhCCCCEEEEEEEECCEEeecccCC
Confidence            468899999999999999 99999999999999  999999999998767889999999999766555443

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.13  E-value=1.7e-10  Score=102.32  Aligned_cols=69  Identities=25%  Similarity=0.390  Sum_probs=64.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.++.++..++.. .+|+++.|+|.|+|+.+++++++.
T Consensus       244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  313 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ  313 (318)
T ss_dssp             CCEEEEEECTTSTTTTTCCCTTCCEEEETTEE--CCCHHHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECE
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            46899999999999999999999999999999  9999999999986 678999999999999999998875

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.12  E-value=1.8e-10  Score=83.39  Aligned_cols=59  Identities=19%  Similarity=0.294  Sum_probs=52.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ++++|..|.++|||++|||++||+|++|||.+  +.++  .++..+++.. +..+.++|.|.+.
T Consensus        28 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~   88 (90)
T 2he4_A           28 PGQYIRSVDPGSPAARSGLRAQDRLIEVNGQN--VEGLRHAEVVASIKAR-EDEARLLVVGPST   88 (90)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence            46899999999999999999999999999999  7776  8999988775 7899999998754

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.12  E-value=2.9e-11  Score=90.95  Aligned_cols=70  Identities=24%  Similarity=0.278  Sum_probs=60.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      ++++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...+.. .+..+.|+|.|++...++.++|..|
T Consensus        36 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~~~~~~v~~~~~  108 (110)
T 1um1_A           36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSS--LLGLGYLRAVDLIRH-GGKKMRFLVAKSDVETAKKIHSGPS  108 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCB--CSSCCHHHHHHHHHT-CCSEEEEEEECCCHHHHHHHSSCSS
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcceeEEEEecCC
Confidence            568899999999999999 99999999999999  64  57777777765 4789999999999887777777654

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.11  E-value=2e-10  Score=84.42  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|| |++||+|++|||.+  +.++  .++..++.. .++++.++|.|+|+
T Consensus        38 g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~   98 (98)
T 1ihj_A           38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKD--VRNSTEQAVIDLIKE-ADFKIELEIQTFDK   98 (98)
T ss_dssp             EEEEEEECTTSHHHHHCSCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-SCSEEEEEEEEC--
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCCC
Confidence            57899999999999999 99999999999999  7664  888888876 78899999999874

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.11  E-value=3.2e-11  Score=89.84  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=57.0

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      ++|..|.++|||++|||++||+|++|||.+  +.++  .++...+... ++.+.++|.|+++..++.++|.
T Consensus        31 v~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~~~~~~v~p~   98 (103)
T 1wf7_A           31 LTISSLKDGGKASQAHVRIGDVVLSIDGIS--AQGMTHLEAQNKIKAC-TGSLNMTLQRASAAAKSEPVSS   98 (103)
T ss_dssp             EEECCCCTTCHHHHTTCCTTCBEEEETTEE--CSSCCHHHHHHHHHHC-SSEEEEEECCCSCCCCCCCCCC
T ss_pred             EEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcCCCCCCCC
Confidence            689999999999999999999999999999  6654  6776666654 7789999999999888888775

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.10  E-value=8e-11  Score=86.65  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.+  +.++..++....++.+.++|.|+|+
T Consensus        33 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~   94 (98)
T 2jxo_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETD   94 (98)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTEEEEEECCHHHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCcEEEEEEECCch
Confidence            36889999999999999999999999999999  777  9999999987777778888888764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.10  E-value=3.2e-10  Score=100.59  Aligned_cols=71  Identities=27%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R-~g~~~~l~l~p~~~  217 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|.++..++.. ..|+++.|+|.| +|+.+++++++..+
T Consensus       242 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~~g~~~~~~v~~~~~  314 (324)
T 1y8t_A          242 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLGKA  314 (324)
T ss_dssp             SSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEECSSCCEEEEEEECEEC
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCCCEEEEEEEEccC
Confidence            46789999999999999999999999999999  9999999998876 578999999999 99999999988644

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.09  E-value=2.6e-10  Score=84.04  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|||++||+|++|||.+  +.  ++.++...+. ..|+.+.++|.|+++
T Consensus        35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           35 HHVVWSVEDGSPAQEAGLRAGDLITHINGES--VLGLVHMDVVELLL-KSGNKISLRTTALEN   94 (99)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence            4589999999999999999999999999999  76  8999988887 467899999999765

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.08  E-value=3.2e-10  Score=81.94  Aligned_cols=58  Identities=21%  Similarity=0.204  Sum_probs=50.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  ++.++...+... ++.+.++|.|++.
T Consensus        28 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~   87 (89)
T 2q3g_A           28 PLSISRLTPGGKAAQAGVAVGDWVLSIDGEN--AGSLTHIEAQNKIRAC-GERLSLGLSRAIT   87 (89)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHTC-TTEEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCCC
Confidence            4689999999999999999999999999999  65  568888777654 7889999999764

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.08  E-value=4.2e-10  Score=79.28  Aligned_cols=58  Identities=29%  Similarity=0.402  Sum_probs=50.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++....+ .+.++|.|+|
T Consensus        21 ~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g   81 (81)
T 2rcz_A           21 SHIFVKEISQDSLAARDGNIQEGDVVLKINGTV--TENMSLTDAKTLIERSKG-KLKMVVQRDE   81 (81)
T ss_dssp             EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSTT-EEEEEEEC--
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHCCCC-eEEEEEEeCC
Confidence            357899999999999999 99999999999999  88  99999988876544 8899998864

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.08  E-value=6.7e-11  Score=86.61  Aligned_cols=59  Identities=14%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++..++.... +.+.++|.|+++.
T Consensus        31 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~   91 (94)
T 1vb7_A           31 PIIVTKVTERGKAEAADLRPGDIIVAINGQS--AENMLHAEAQSKIRQSA-SPLRLQLDRSSGP   91 (94)
T ss_dssp             EEECCCBCTTSSHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred             CeEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence            5788999999999999999999999999999  7665  99998887655 7899999998864

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.07  E-value=4.8e-11  Score=91.72  Aligned_cols=64  Identities=16%  Similarity=0.274  Sum_probs=57.3

Q ss_pred             CceEEEEecC--CChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEE
Q 026990          145 PFAVIDEITD--ASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLA  211 (230)
Q Consensus       145 p~~~V~~V~~--~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~  211 (230)
                      .+++|..|.+  +|||++|||++||+|++|||.+  +.+|  .++..++... ++.+.|+|.|+++..++.
T Consensus        44 ~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~--v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~~~~~~  111 (118)
T 2yub_A           44 TTVQVKEVNRMHISPNNRNAIHPGDRILEINGTP--VRTLRVEEVEDAIKQT-SQTLQLLIEHDPVPQRLD  111 (118)
T ss_dssp             CEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSB--TTTSCHHHHHHHHHCC-SSCEEEEEEECSSCCCCC
T ss_pred             CcEEEEEecCCCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHhC-CCEEEEEEEECCEEEeee
Confidence            5688999999  9999999999999999999999  8888  9999999877 889999999998765443

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.07  E-value=5e-10  Score=90.10  Aligned_cols=78  Identities=21%  Similarity=0.224  Sum_probs=61.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHH-HH-HHHhhCCCCeEEEEEEECCEEEEEEEEecCCCCcce
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLER-LA-AEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQGRGL  222 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~d-l~-~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~  222 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.+|.+ +. .++....++.+.++|+|+++.+++++++..   .+.
T Consensus        27 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~~~~v~l~~~~---~~~  101 (166)
T 1w9e_A           27 NGIFVQLVQANSPASLVGLRFGDQVLQINGEN--CAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDS---TGH  101 (166)
T ss_dssp             TEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCSSEEEEEEECCTTCEEEEEECCT---TSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEcCCCcEEEEEecCC---CCc
Confidence            46889999999999999999999999999999  888876 55 445556778999999554488888887642   234


Q ss_pred             eeEEE
Q 026990          223 LGCHF  227 (230)
Q Consensus       223 LG~~~  227 (230)
                      ||+.+
T Consensus       102 lG~~~  106 (166)
T 1w9e_A          102 VGFIF  106 (166)
T ss_dssp             CSEEE
T ss_pred             EeEEE
Confidence            67654

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.07  E-value=6.3e-10  Score=82.55  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||++|||++||+|++|||.++...+|+++...+....++.+.++|.|.
T Consensus        45 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           45 KGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEcC
Confidence            468899999999999999999999999999992224488999998777788999999884

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.06  E-value=1.2e-10  Score=86.84  Aligned_cols=60  Identities=22%  Similarity=0.143  Sum_probs=54.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.+  +.++..++... ++.+.|+|.|+++.+
T Consensus        30 ~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~~~   91 (103)
T 1v5l_A           30 PLVITRITPGSKAAAANLCPGDVILAIDGFG--TESMTHADAQDRIKAA-SYQLCLKIDRAETRL   91 (103)
T ss_dssp             EEECSCBCTTSTTGGGTCCTTCBEEEETTEE--CSSCCHHHHHHHHTTC-CSEEECEECCCTTTT
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEECCeEc
Confidence            4688999999999999999999999999999  877  99999999876 889999999988643

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.06  E-value=1e-10  Score=90.22  Aligned_cols=69  Identities=19%  Similarity=0.197  Sum_probs=62.5

Q ss_pred             CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      ..++|..|.++|||+++|| ++||+|++|||.+  +.+  +.++..++....|+.+.++|.|+|+..++.+.+.
T Consensus        33 ~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~~~~~  104 (127)
T 1b8q_A           33 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP--LVDLSYDSALEVLRGIASETHVVLILRGPEGFTTHLETT  104 (127)
T ss_dssp             SCEEECCCSSSSSHHHHSSCCTTTCCCEETTEE--CSSSCHHHHHHHHHSCCSSCEEEEEECCCCSEEECCCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEeCCceEEEEEEEE
Confidence            3578999999999999999 9999999999999  777  9999999987778899999999999888887764

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.06  E-value=4.4e-10  Score=81.54  Aligned_cols=58  Identities=16%  Similarity=0.268  Sum_probs=52.6

Q ss_pred             ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++ +||++||+|++|||.+  +.  +++++..+++...+ ++.++|.|.+.
T Consensus        26 ~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~   86 (88)
T 1kwa_A           26 HCIVARIMHGGMIHRQGTLHVGDEIREINGIS--VANQTVEQLQKMLREMRG-SITFKIVPSYR   86 (88)
T ss_dssp             GEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--GGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence            478999999999999 8999999999999999  76  89999999988776 89999988764

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.06  E-value=1.2e-11  Score=95.39  Aligned_cols=69  Identities=20%  Similarity=0.230  Sum_probs=60.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEE--EEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN--LAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~--l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.+  +.++..++....+..+.++|.|+|+...  ++++|.
T Consensus        33 ~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~~~~~~~~l~~~  105 (128)
T 2kjd_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPS  105 (128)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTCSEEEEEEECHHHHHHHHHHTCCCC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCEEEEEEEeCCcceEEEEEEEec
Confidence            36889999999999999999999999999999  777  9999999987777888899999887665  666664

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.05  E-value=3.3e-10  Score=82.98  Aligned_cols=61  Identities=25%  Similarity=0.363  Sum_probs=50.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~  207 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++..... ...+.++.++|.|+|+.
T Consensus        34 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   95 (97)
T 2w4f_A           34 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRGAGTAVQMRVWRERET   95 (97)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCSEEEEEEECCSSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhCCCCeEEEEEEeCCcc
Confidence            46889999999999999999999999999999  777655443322 24788999999998863

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.05  E-value=7.7e-10  Score=79.14  Aligned_cols=57  Identities=21%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R  203 (230)
                      ++++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++... .++++.++|.|
T Consensus        25 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R   85 (85)
T 2i04_A           25 EFLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCR   85 (85)
T ss_dssp             BCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence            357899999999999999 99999999999999  76  578998888765 37889998875

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=99.05  E-value=6.5e-10  Score=103.38  Aligned_cols=69  Identities=17%  Similarity=0.284  Sum_probs=64.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|.++...+.. ..|+.+.++|.|+|+..++++++.
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~  351 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTK--ITQATQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVT  351 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECB
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEc
Confidence            46899999999999999999999999999999  9999999998885 678999999999999999988875

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.05  E-value=4.6e-10  Score=84.18  Aligned_cols=58  Identities=12%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh--CCCCeEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK--NQGNAVPVVIM  202 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~--~~g~~v~l~V~  202 (230)
                      ..++|.+|.++|||++|||++||+|++|||.++.+.+|+++...+..  ..++++.+.|.
T Consensus        39 ~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~   98 (101)
T 3qik_A           39 KAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA   98 (101)
T ss_dssp             TEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence            35789999999999999999999999999999333599999999986  46889988875

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=4.6e-10  Score=84.32  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=49.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+.. .++.+.|+|.|+|+.
T Consensus        46 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~  107 (110)
T 1x5q_A           46 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVA--LQGAEHHEAVEALRG-AGTAVQMRVWRESGP  107 (110)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEEECSSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHhhC-CCCeEEEEEEECCcc
Confidence            45789999999999999999999999999999  666  4444444443 789999999998864

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.04  E-value=1.1e-10  Score=90.35  Aligned_cols=69  Identities=19%  Similarity=0.221  Sum_probs=57.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec--CCC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR--PWQ  218 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~--~~~  218 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++...+.  .++.+.|+|.|+|+..++.++|.  .|.
T Consensus        47 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~~~--~~~~v~l~v~R~g~~~~~~v~~~~~~w~  119 (128)
T 1uf1_A           47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRS--FLNILHDEAVRLLK--SSRHLILTVKDVGRLPHARTTVDETKWI  119 (128)
T ss_dssp             CCEEEEECTTCHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHT--TCSEEEEEEECCSCCSSCSCCCCSSCSC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHh--cCCeEEEEEEECCcccccccccccccee
Confidence            5789999999999999999999999999999  7664  45555554  35799999999999887777775  573

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.04  E-value=7.2e-10  Score=98.64  Aligned_cols=67  Identities=28%  Similarity=0.328  Sum_probs=61.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|.+|.++|||++|||++||+|++|||++  +.++.++..++..  ++++.|+|.|+|+.+++.++|.
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~  322 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE  322 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEE--cCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence            36899999999999999999999999999999  9999999998865  5789999999999999998874

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.04  E-value=1.4e-09  Score=100.66  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.+|.++...+.. ..|+.+.++|.|+|+..++++++..|
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~  334 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKP--LNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS  334 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEE--CCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence            46889999999999999999999999999999  9999999998875 46899999999999999999887654

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.04  E-value=4.8e-10  Score=86.64  Aligned_cols=60  Identities=23%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~-~~g~~v~l~V~R~g~  206 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++  .++..++.. ..++.+.|+|.|+++
T Consensus        51 ~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  113 (124)
T 3tsv_A           51 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKKD  113 (124)
T ss_dssp             SCEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence            46889999999999999999999999999999  7776  899887775 678899999999765

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.04  E-value=4.6e-10  Score=80.23  Aligned_cols=57  Identities=19%  Similarity=0.238  Sum_probs=48.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++...+.. .+..+.++|.|++
T Consensus        26 ~v~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   84 (85)
T 1rgw_A           26 PLTISRITPGSKAAQSQLSQGDLVVAIDGVN--TDTMTHLEAQNKIKS-ASYNLSLTLQKSK   84 (85)
T ss_dssp             CCBEEEECTTSHHHHSSCCCCSBEEEETTEE--CTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence            4689999999999999999999999999999  6665  777777654 3467999999876

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.04  E-value=7.4e-10  Score=81.89  Aligned_cols=58  Identities=14%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+..  +..+.|+|.|+|+
T Consensus        36 ~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~~--~~~v~l~v~R~g~   95 (100)
T 2eeh_A           36 LGIFVSKVEEGSSAERAGLCVGDKITEVNGLS--LESTTMGSAVKVLTS--SSRLHMMVRRMGS   95 (100)
T ss_dssp             CCEEEEEECTTSHHHHHTCCSSCEEEEETTEE--CSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence            35889999999999999999999999999999  655  6777777754  6899999999875

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.03  E-value=3.9e-10  Score=101.32  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=65.6

Q ss_pred             CCceEEEEecCCChhhhcCCCC-----------CCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDGLQL-----------GDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLA  211 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AGL~~-----------GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~  211 (230)
                      ..+++|.+|.++|||++|||++           ||+|++|||++  +.+++++..++.. .+|+++.|+|.|+|+.++++
T Consensus       250 ~~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~--v~~~~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~  327 (348)
T 3qo6_A          250 VSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTK--VSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKIS  327 (348)
T ss_dssp             CSSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBC--CSSSHHHHHHHTTCCTTCEEEEEEECSSSEEEEE
T ss_pred             CceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEE--eCCHHHHHHHHHhCCCcCEEEEEEEECCEEEEEE
Confidence            3688999999999999999999           99999999999  9999999999965 56899999999999999998


Q ss_pred             EEecCC
Q 026990          212 VTPRPW  217 (230)
Q Consensus       212 l~p~~~  217 (230)
                      +++..|
T Consensus       328 v~l~~~  333 (348)
T 3qo6_A          328 VTLEPK  333 (348)
T ss_dssp             EECEEC
T ss_pred             EEEccC
Confidence            888644

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.03  E-value=8.9e-10  Score=83.58  Aligned_cols=58  Identities=10%  Similarity=0.089  Sum_probs=51.1

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  +++++..++....++++.++|.|..
T Consensus        45 ~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~--v~~~~~~dv~~~i~~~~~~~v~l~V~~~~  104 (109)
T 2vsv_A           45 PVQVHFLDPYCSASVAGAREGDYIVSIQLVD--CKWLTLSEVMKLLKSFGEDEIEMKVVSLL  104 (109)
T ss_dssp             SCEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence            3679999999999999999999999999999  87  6799999888766667999998754

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.03  E-value=3.7e-10  Score=84.46  Aligned_cols=60  Identities=23%  Similarity=0.316  Sum_probs=53.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..++.. .+..+.|+|.|+++.
T Consensus        44 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~  106 (108)
T 2jre_A           44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVN--VQGMAQSDVVEVLRN-AGNPVRLLLIRRLPL  106 (108)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCSSEEEEEETTEE--CTTSCHHHHHHHHHH-HCSEEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence            368899999999999999 99999999999999  766  7888888876 678999999998754

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.02  E-value=1e-09  Score=80.56  Aligned_cols=60  Identities=20%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.  ++.++..++. ..++.+.|+|.|+++.
T Consensus        30 ~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~~   92 (97)
T 1n7e_A           30 DPIIISSLTKGGLAERTGAIHIGDRILAINSSS--LKGKPLSEAIHLLQ-MAGETVTLKIKKQTDA   92 (97)
T ss_dssp             SCCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TCCSEEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEeCCCC
Confidence            357899999999999999 99999999999999  64  5788888887 5788999999998753

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.02  E-value=1.1e-09  Score=84.18  Aligned_cols=60  Identities=22%  Similarity=0.308  Sum_probs=53.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC-CCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN-QGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~-~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..+++.. .+..+.|+|.|+|+
T Consensus        58 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~  121 (121)
T 2kom_A           58 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LVGKSQEEVVSLLRSTKMEGTVSLLVFRQED  121 (121)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCSSSEEEEETTEE--CTTSCHHHHHHHHHHCCSSCEEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEeCCC
Confidence            457899999999999999 99999999999999  765  68998888875 58899999999863

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.02  E-value=8e-10  Score=80.04  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=49.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ++++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+....++.+.+.+.|+++
T Consensus        27 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~~~~~~r~~~   88 (91)
T 1g9o_A           27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGEN--VEKETHQQVVSRIRAALNAVRLLVVDPETD   88 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCSSEEEEEEECCCCS
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCcEEEEEEcCCcc
Confidence            46889999999999999999999999999999  655  7888888877666555555556543

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=1.2e-09  Score=79.28  Aligned_cols=59  Identities=22%  Similarity=0.207  Sum_probs=49.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|++..
T Consensus        25 ~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~   85 (91)
T 2f5y_A           25 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRS-CPSEIILLVWRMVPQ   85 (91)
T ss_dssp             SCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEEECC--
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCC
Confidence            3789999999999999999999999999999  66  56888887765 456899999998754

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.02  E-value=9.1e-10  Score=81.55  Aligned_cols=59  Identities=20%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..++....+ .+.++|.|.+.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~  100 (103)
T 2fcf_A           39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAGN-PVVFMVQSIIS  100 (103)
T ss_dssp             --EEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCS-SEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-cEEEEEEECCC
Confidence            368899999999999999 99999999999999  776  9999999987644 89999998653

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.02  E-value=9.5e-10  Score=80.72  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=51.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+... ++.+.++|.|++...
T Consensus        30 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~   93 (98)
T 2opg_A           30 GAIIIHEVYEEGAACKDGRLWAGDQILEVNGID--LRKATHDEAINVLRQT-PQRVRLTLYRDEAPY   93 (98)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEECSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCCCCC
Confidence            468899999999999999 99999999999999  655  67777777654 478999999987643

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.02  E-value=1.3e-09  Score=79.64  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|++.
T Consensus        33 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~   94 (96)
T 1d5g_A           33 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQS   94 (96)
T ss_dssp             SCCEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence            467899999999999999 99999999999999  66  67888887765 67899999998764

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=7.1e-10  Score=81.08  Aligned_cols=58  Identities=14%  Similarity=0.068  Sum_probs=49.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+.. .++.+.++|.|+++
T Consensus        33 ~v~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~   92 (94)
T 2eeg_A           33 PLTISRVHAGSKAALAALCPGDLIQAINGES--TELMTHLEAQNRIKG-CHDHLTLSVSSGPS   92 (94)
T ss_dssp             CCEECCCCSSSHHHHTTCCTTCEEEEETTEE--TTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            4689999999999999999999999999999  666  5677666655 67789999999764

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.01  E-value=1.4e-09  Score=79.74  Aligned_cols=57  Identities=16%  Similarity=0.251  Sum_probs=50.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.+  +.++..++... +..+.|+|.|.
T Consensus        37 ~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~   95 (96)
T 2ego_A           37 MVTFVARVHESSPAQLAGLTPGDTIASVNGLN--VEGIRHREIVDIIKAS-GNVLRLETLYG   95 (96)
T ss_dssp             EEEEEEEECTTCHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEECC
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEEC
Confidence            35789999999999999999999999999999  766  79999999876 45899988764

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.01  E-value=6.4e-10  Score=85.37  Aligned_cols=60  Identities=25%  Similarity=0.266  Sum_probs=54.1

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCC-CCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ-GNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~-g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||++|| |++||+|++|||++  +.+  ++++..+++... ++.+.|+|.|++..
T Consensus        46 ~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           46 PPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             CCEEEEECTTSHHHHSCCCCTTCCEEEETTEE--SSSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             CcEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence            37899999999999999 99999999999999  866  999999998755 88999999998763

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.01  E-value=1.4e-09  Score=81.74  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=53.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhC-CCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~-~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +  .++.++..+++.. .+..+.++|.|+++.
T Consensus        39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  103 (111)
T 2koj_A           39 APIYVKNILPRGAAIQDGRLKAGDRLIEVNGVD--LAGKSQEEVVSLLRSTKMEGTVSLLVFRQEEA  103 (111)
T ss_dssp             SCEEEEEECSSSHHHHHCSSCTTCEEEEETTEE--CTTSCHHHHHHHHHHCCCSSEEEEEEEECCCC
T ss_pred             cCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            457899999999999999 99999999999999  6  4468999888874 588999999998753

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.01  E-value=1.5e-10  Score=87.90  Aligned_cols=61  Identities=25%  Similarity=0.212  Sum_probs=54.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC---CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~---~~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.   ++.++..++.. .+..+.++|.|+++..
T Consensus        49 ~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  113 (117)
T 2o2t_A           49 LGIFVQEIQEGSVAHRDGRLKETDQILAINGQA--LDQTITHQQAISILQK-AKDTVQLVIARGSLPQ  113 (117)
T ss_dssp             EEEEECCCCTTSHHHHHCCCCTTCEEEEETTEE--CCTTSCHHHHHHHHHH-CCSEEEEEEESSCCGG
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCEEEEEEEeCCcce
Confidence            468899999999999999 99999999999999  76   89999988876 5789999999987643

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.01  E-value=1.4e-09  Score=83.08  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=52.1

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...++...+ .+.|+|.|+++.
T Consensus        54 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v~R~g~~  115 (117)
T 2fne_A           54 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQS--LEGVTHEEAVAILKRTKG-TVTLMVLSSDET  115 (117)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCCS-SEEEEEEECSCE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEeCCcc
Confidence            57899999999999999 99999999999999  76  89999888876544 699999998864

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=99.00  E-value=1.7e-09  Score=100.08  Aligned_cols=70  Identities=23%  Similarity=0.252  Sum_probs=64.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ  218 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~  218 (230)
                      +++|..|.++|||+++||++||+|++|||++  +.+|+++..+++... ..+.|+|.|+|+.+.+.+.|..|.
T Consensus       364 gv~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~~~~~  433 (436)
T 4a8c_A          364 GIKIDEVVKGSPAAQAGLQKDDVIIGVNRDR--VNSIAEMRKVLAAKP-AIIALQIVRGNESIYLLMRLEHHH  433 (436)
T ss_pred             CEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHhCC-CeEEEEEEECCEEEEEEEEecccC
Confidence            5789999999999999999999999999999  999999999998754 489999999999999999998764

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.00  E-value=9.6e-10  Score=82.69  Aligned_cols=60  Identities=18%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC--CCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN--QGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~--~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++| |++||+|++|||++  +.+  +.++..+++..  .+..+.|+|.|.+.
T Consensus        33 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           33 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMN--FENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             CEEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--TTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            467899999999999999 99999999999999  766  99999999865  44579999999765

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.00  E-value=3.3e-10  Score=85.27  Aligned_cols=70  Identities=31%  Similarity=0.424  Sum_probs=56.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCCC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPWQ  218 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~~  218 (230)
                      ..++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++.. .+..+.|+|.|++.. ....+|..|.
T Consensus        38 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~-~~~~~~~~~~  110 (111)
T 2dlu_A           38 SGVVVRTIVPGGLADRDGRLQTGDHILKIGGTN--VQGMTSEQVAQVLRN-CGNSVRMLVARDPAG-DISVTSGPSS  110 (111)
T ss_dssp             SSBEEEEECTTSSHHHHTCCCSSCEEEEESSCC--CTTSCHHHHHHHHHH-HCSEEEEEEEESCTT-CCCCCCCTTC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCCC-ccCCCCCCCC
Confidence            358899999999999999 99999999999999  65  57888888876 467899999998764 3344444454

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.99  E-value=1.3e-09  Score=81.20  Aligned_cols=56  Identities=21%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.+  +.++..+++.  ++.+.|+|.|+.
T Consensus        42 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~~   99 (104)
T 1wi2_A           42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVD--FQDIEHSKAVEILKT--AREISMRVRFFS   99 (104)
T ss_dssp             CCEEEEECTTSHHHHHTCCTTCEEEEETTEE--CSSCCHHHHHHHHHH--SSSEEEEEECCC
T ss_pred             CEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC--CCEEEEEEEECC
Confidence            5789999999999999999999999999999  776  9999998887  678999998864

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=98.99  E-value=1.6e-09  Score=79.08  Aligned_cols=59  Identities=29%  Similarity=0.330  Sum_probs=50.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ++++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|+++
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~   90 (95)
T 2vwr_A           29 PGVFILDLLEGGLAAQDGRLSSNDRVLAINGHD--LKYGTPELAAQIIQA-SGERVNLTIARPGK   90 (95)
T ss_dssp             CSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEEEESC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEcCCc
Confidence            468999999999999999 99999999999999  644  6666666654 47899999999765

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.99  E-value=1.5e-09  Score=89.43  Aligned_cols=60  Identities=25%  Similarity=0.299  Sum_probs=54.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~  206 (230)
                      +.++|..|.++|||++|| |++||+|++|||++  +.  +|.++..++.... +..+.++|.|+++
T Consensus        36 ~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   99 (196)
T 1p1d_A           36 SPPLISYIEADSPAERCGVLQIGDRVMAINGIP--TEDSTFEEANQLLRDSSITSKVTLEIEFDVA   99 (196)
T ss_dssp             CSEEEEECCTTSHHHHTSCCCSSCCEEEETTBC--STTSCHHHHHHHHHTCCSSSEEEEEEEECSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecCC
Confidence            458899999999999999 99999999999999  77  7899999998754 8899999999884

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=98.98  E-value=1.7e-09  Score=80.06  Aligned_cols=61  Identities=28%  Similarity=0.324  Sum_probs=52.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|++...
T Consensus        34 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~~   97 (102)
T 2i1n_A           34 PGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVD--VSEVVHSRAVEALKE-AGPVVRLVVRRRQPPP   97 (102)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-SCSEEEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCCCC
Confidence            468899999999999999 99999999999999  654  7888887766 5789999999987643

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=98.98  E-value=3.8e-10  Score=84.14  Aligned_cols=60  Identities=28%  Similarity=0.381  Sum_probs=51.1

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++  .++...+.. .+..+.++|.|++..
T Consensus        26 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~   87 (106)
T 3ngh_A           26 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRK-SGNSVTLLVLDGDSY   87 (106)
T ss_dssp             CSCEEECCCTTSHHHHTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHH-TTTEEEEEEECHHHH
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCEEEEEEEECCee
Confidence            35789999999999999999999999999999  6554  588888874 578999999987643

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=1.2e-09  Score=81.09  Aligned_cols=59  Identities=22%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+.. .+..+.|+|.|+++
T Consensus        38 ~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~   99 (104)
T 2djt_A           38 TPLAVRGLLKDGPAQRCGRLEVGDLVLHINGES--TQGLTHAQAVERIRA-GGPQLHLVIRRPLS   99 (104)
T ss_dssp             CCCEEEEECTTCHHHHHCSCCTTCBEEEETTEE--CTTCCHHHHHHHHHH-TCSEEEEEECCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence            347899999999999999 99999999999999  655  6788777766 67899999999875

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=98.98  E-value=2.6e-10  Score=86.07  Aligned_cols=68  Identities=18%  Similarity=0.116  Sum_probs=57.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.  ++.++..++... +..+.++|.|++...++.++|.
T Consensus        35 ~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~~~~~v~p~  105 (113)
T 2g5m_B           35 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTS--LVGVTQSFAASVLRNT-KGRVRFMIGRERPGEQSEVAQL  105 (113)
T ss_dssp             EEEEEEECCTTSHHHHHTCSCTTCBEEEETTEE--CSSCCHHHHHHHHHHS-CSSCEEEEEECCCCTTSSCSSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC-CCeEEEEEEeCCCCCcchhhhh
Confidence            468899999999999999 99999999999999  65  477777777764 7899999999988776666664

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=98.97  E-value=1.5e-09  Score=80.53  Aligned_cols=59  Identities=24%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             CCceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhC-CCCeEEEEEEEC
Q 026990          144 RPFAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKN-QGNAVPVVIMRQ  204 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~-~g~~v~l~V~R~  204 (230)
                      .+.++|..|.++|||++ +||++||+|++|||.+  +  .+++++..+++.. .+..+.|+|.|.
T Consensus        36 ~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~   98 (101)
T 2yt7_A           36 LPTAVIANLLHGGPAERSGALSIGDRLTAINGTS--LVGLPLAACQAAVRETKSQTSVTLSIVHC   98 (101)
T ss_dssp             SCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCB--CTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             ccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence            34679999999999999 6799999999999999  7  8999999999875 788999999874

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.97  E-value=2.4e-09  Score=82.22  Aligned_cols=59  Identities=22%  Similarity=0.297  Sum_probs=53.2

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|| |++||+|++|||++  +.  ++.++..+++... +..+.|+|.|++.
T Consensus        45 gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  107 (123)
T 1ueq_A           45 FLQVKSVIPDGPAAQDGKMETGDVIVYINEVC--VLGHTHADVVKLFQSVPIGQSVNLVLCRGYP  107 (123)
T ss_dssp             CCEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEESCC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            48899999999999999 99999999999999  76  7899999998754 8899999999864

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=98.97  E-value=1.1e-09  Score=78.95  Aligned_cols=57  Identities=21%  Similarity=0.315  Sum_probs=46.9

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhh-CCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRK-NQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~-~~g~~v~l~V~R~g~  206 (230)
                      ..+|..| ++|||+ |||++||+|++|||.+  +.++  .++...+.. ..++++.++|.|+|+
T Consensus        28 ~~~v~~v-~~spA~-aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   87 (88)
T 3bpu_A           28 GQRVKQI-VDSPRS-RGLKEGDLIVEVNKKN--VQALTHNQVVDMLVESPKGSEVTLLVQRQTR   87 (88)
T ss_dssp             SEEEEEC-CC--CC-TTCCTTCEEEEETTEE--CTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred             cEEEEEe-cCChhH-hCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence            4667776 999999 9999999999999999  7665  899888874 578899999999764

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=98.97  E-value=2.4e-09  Score=77.84  Aligned_cols=58  Identities=24%  Similarity=0.351  Sum_probs=49.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+... +..+.++|.|++
T Consensus        33 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~g   93 (94)
T 2fe5_A           33 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTN--LQDVRHEEAVASLKNT-SDMVYLKVAKPG   93 (94)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEcCC
Confidence            358899999999999999 99999999999999  655  67777777654 458999999876

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=98.96  E-value=1.3e-09  Score=79.36  Aligned_cols=58  Identities=22%  Similarity=0.316  Sum_probs=48.7

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++..+++. .+..+.+.+.|.+.
T Consensus        30 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~~~~~~~r~~~   89 (95)
T 3r68_A           30 GQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEL   89 (95)
T ss_dssp             SEEEECCCTTSHHHHHTCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEECCcc
Confidence            6789999999999999999999999999999  7666  899998887 45566777766544

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.96  E-value=1.5e-09  Score=81.87  Aligned_cols=60  Identities=20%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCC---CCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQ---GNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~---g~~v~l~V~R~g~  206 (230)
                      +.++|..|.++|||+++| |++||+|++|||+.  +..  ++++..+|+...   +.++.|.|.|+++
T Consensus        41 ~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~--~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R~~~  106 (109)
T 1wi4_A           41 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKES--MIGVSFEEAKSIITRAKLRSESPWEIAFIRSGP  106 (109)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSC--CTTCCHHHHHHHHHHSCCSSSSCEEEEEECCCC
T ss_pred             CCEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHccccCCCceEEEEEEeCCC
Confidence            357899999999999999 99999999999999  554  999999998876   8899999998764

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=98.96  E-value=2.3e-09  Score=80.45  Aligned_cols=56  Identities=16%  Similarity=0.300  Sum_probs=49.7

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +++|..|.++|||++|||++||+|++|||.+  +.++  .++...+... +..+.++|.|.
T Consensus        46 gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~~~  103 (109)
T 1q3o_A           46 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVMV  103 (109)
T ss_dssp             SEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEEC
Confidence            6889999999999999999999999999999  7777  8888888764 67888888774

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=98.96  E-value=6e-10  Score=84.40  Aligned_cols=67  Identities=25%  Similarity=0.327  Sum_probs=56.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.+  +.++...++.. |+.+.++|.|+++..++.++|
T Consensus        38 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~~~~~~~~~  106 (114)
T 2edz_A           38 DGHLIRVIEEGSPAEKAGLLDGDRVLRINGVF--VDKEEHAQVVELVRKS-GNSVTLLVLDGDSYEKAVKNQ  106 (114)
T ss_dssp             CSCEEECCCTTCTTGGGTCCTTCEEEEESSSB--CSSSCHHHHHHHHHHT-CSEEEEEEECHHHHHHHHHHT
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCcceehhhcC
Confidence            45789999999999999999999999999999  655  68898888764 889999999987655444433

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=2.1e-09  Score=78.58  Aligned_cols=54  Identities=11%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             EEEEecCCChhhhcCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +|..|.++|||++|||++||+|++|||.+  +  .++.++..+++.. +..+.++|.+.
T Consensus        34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~p~   89 (90)
T 1y7n_A           34 IICSLMRGGIAERGGVRVGHRIIEINGQS--VVATPHEKIVHILSNA-VGEIHMKTMPA   89 (90)
T ss_dssp             EEEEECTTSHHHHHTCCSSCEEEEETTEE--CTTSCHHHHHHHHHHC-CEEEEEEEECC
T ss_pred             EEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            89999999999999999999999999999  7  5899999998754 77888888754

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.96  E-value=9.9e-10  Score=81.70  Aligned_cols=59  Identities=15%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~-g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|| |++||+|++|||.+  +  .++.++..+++... +..+.|+|.|++.
T Consensus        35 ~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIP--VAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             CCBEEEECTTSTTGGGTCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CeEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            47899999999999999 99999999999999  6  45899998887654 7899999999754

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=98.95  E-value=1.4e-09  Score=79.37  Aligned_cols=58  Identities=12%  Similarity=0.237  Sum_probs=47.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.++  .++...++  .++++.|+|.|++.
T Consensus        29 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~~~--~g~~v~l~v~R~~~   88 (93)
T 2dls_A           29 RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTM--VTNSSHLEVVKLIK--SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSCEEEEECSSSTTTTTTCCSSCEEEEETTEE--CSSSCHHHHHHHHT--SSSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHhhc--CCCEEEEEEEECCC
Confidence            35789999999999999999999999999999  6654  34444443  58899999999753

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=2.2e-09  Score=81.99  Aligned_cols=58  Identities=22%  Similarity=0.272  Sum_probs=51.8

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...++.. +..+.|+|.|++.
T Consensus        55 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~~  115 (117)
T 2byg_A           55 SIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYS--LEEVTHEEAVAILKNT-SEVVYLKVGKPTT  115 (117)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHTC-CSEEEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCc
Confidence            57899999999999999 99999999999999  66  788888888754 7899999999765

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=98.95  E-value=2.5e-09  Score=83.28  Aligned_cols=59  Identities=25%  Similarity=0.284  Sum_probs=52.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R~g  205 (230)
                      ++++|..|.++|||+++| |++||+|++|||++  +.  ++.++..++... .+..+.|+|.|++
T Consensus        65 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g  127 (131)
T 1wfg_A           65 LCAFITKVKKGSLADTVGHLRPGDEVLEWNGRL--LQGATFEEVYNIILESKPEPQVELVVSRSG  127 (131)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence            367899999999999999 99999999999999  64  579999999875 6789999999865

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=98.95  E-value=5e-09  Score=78.46  Aligned_cols=67  Identities=19%  Similarity=0.366  Sum_probs=53.6

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE---EEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG---LINLAVT  213 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~---~~~l~l~  213 (230)
                      .++|..|.++|||+++| |++||+|++|||.++.-.++.++...++. .+..+.++|.|+++   ..+++++
T Consensus        33 gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~~~~v~l~  103 (106)
T 4amh_A           33 SIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKPGSGEKIMEIKLI  103 (106)
T ss_dssp             CEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECCSSSCSEEEEEEE
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeCCCCCeEEEEEEe
Confidence            58899999999999999 99999999999999222457888777765 46699999999764   3444443

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=98.95  E-value=3.1e-09  Score=80.28  Aligned_cols=60  Identities=17%  Similarity=0.265  Sum_probs=51.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...+.. .+..+.|+|.|++..
T Consensus        49 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~  111 (112)
T 2r4h_A           49 MDLYVLRLAEDGPAERSGKMRIGDEILEINGET--TKNMKHSRAIELIKN-GGRRVRLFLKRGETS  111 (112)
T ss_dssp             CCEEEEEECTTSHHHHTTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TTTEEEEEEECCEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence            357899999999999999 99999999999999  64  46777777765 678899999998753

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=98.95  E-value=1.4e-09  Score=80.75  Aligned_cols=57  Identities=12%  Similarity=0.297  Sum_probs=49.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  |+++..+++.. +.++.++|.+.
T Consensus        36 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~L~V~~~   95 (97)
T 2ejy_A           36 QSCTVARILHGGMIHRQGSLHVGDEILEINGTN--VTNHSVDQLQKAMKET-KGMISLKVIPN   95 (97)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTBC--CCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            357899999999999999 99999999999999  774  99999999875 56788887754

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.95  E-value=1.5e-09  Score=82.23  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=52.7

Q ss_pred             eEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          147 AVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       147 ~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ++|..|.++|||++ |||++||+|++|||.+  +.+  +.++..++.. .+..+.|+|.|+++.
T Consensus        45 ~~V~~V~~~spA~~~agL~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~~  105 (114)
T 1uew_A           45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQS--IINMPHADIVKLIKD-AGLSVTLRIIPQEEL  105 (114)
T ss_dssp             CEEEEECTTCTTGGGSSCCTTCBEEEETTBC--TTTSCHHHHHHHHHH-TTTEEEEEECCCSCC
T ss_pred             eEEEEECCCChHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcC
Confidence            58999999999999 9999999999999999  766  7999999987 788999999998763

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.95  E-value=4e-09  Score=87.00  Aligned_cols=81  Identities=16%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC----HHHHHHHHhhCCCCeEEEEEEECCEEE--EEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL----LERLAAEGRKNQGNAVPVVIMRQGGLI--NLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~----~~dl~~~l~~~~g~~v~l~V~R~g~~~--~l~l~p~~~  217 (230)
                      .+++|..|.++|||++|| |++||+|++|||++  +.+    +.++...+....+..+.++|.|++...  .+++....+
T Consensus        45 ~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~~~~~~v~l~~~  122 (206)
T 3r0h_A           45 TGCVITHVYPEGQVAADKRLKIFDHICDINGTP--IHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKK  122 (206)
T ss_dssp             SCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CCGGGSCHHHHHHHHHSCCSSEEEEEEECCSSCCEEEEEEEEECC
T ss_pred             CCeEEEEECCCChHHhcCCCCCCCEEEEECCEE--cCCCccCHHHHHHHHHhcCCCceEEEEEecccCCCcEEEEEEecC
Confidence            468899999999999998 99999999999999  766    777777776555555999999987533  344443333


Q ss_pred             CCcceeeEEEE
Q 026990          218 QGRGLLGCHFR  228 (230)
Q Consensus       218 ~g~g~LG~~~~  228 (230)
                      .+ ..||+.+.
T Consensus       123 ~~-~~lG~~~~  132 (206)
T 3r0h_A          123 AG-KELGLSLS  132 (206)
T ss_dssp             TT-CCCCEEEE
T ss_pred             CC-CccCeEEE
Confidence            22 23566553

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.94  E-value=3.8e-09  Score=85.95  Aligned_cols=78  Identities=24%  Similarity=0.292  Sum_probs=56.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHH--HHHhhCCCCeEEEEEEECC--EEEEEEEEecCCCC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLA--AEGRKNQGNAVPVVIMRQG--GLINLAVTPRPWQG  219 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~--~~l~~~~g~~v~l~V~R~g--~~~~l~l~p~~~~g  219 (230)
                      ++++|..|.|+|||++|| |++||+|++|||++  +.+|.++.  ..+ ...+..+.++|.|++  ....+++....|..
T Consensus        35 ~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~-~~~g~~v~l~v~r~~~~~~~~~~v~l~~~~~  111 (196)
T 3gsl_A           35 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEAL-KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPK  111 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHH-HTSCSEEEEEEEEECCCCEEEEEEEEEEBTT
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHH-HhCCCcEEEEEEecCCCccccEEEEEecCCC
Confidence            568999999999999999 99999999999999  77664443  333 345789999999976  33344444333322


Q ss_pred             cceeeEEE
Q 026990          220 RGLLGCHF  227 (230)
Q Consensus       220 ~g~LG~~~  227 (230)
                        .+|+.+
T Consensus       112 --~lG~~~  117 (196)
T 3gsl_A          112 --GLGFSI  117 (196)
T ss_dssp             --BSCEEE
T ss_pred             --CceEEE
Confidence              345544

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.94  E-value=1.8e-09  Score=83.41  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=55.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..+++. .+..+.|+|.|+++..
T Consensus        46 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  109 (129)
T 2dmz_A           46 SGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVN--IQGFANHDVVEVLRN-AGQVVHLTLVRRKTSS  109 (129)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSCBEEEETTBC--CTTCCHHHHHHHHHH-CCSSEEEEEEEESSSS
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCccc
Confidence            457899999999999999 99999999999999  776  9999999988 7889999999988643

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=98.94  E-value=1.4e-09  Score=78.58  Aligned_cols=57  Identities=16%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             eEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCC-CCeEEEEEEECC
Q 026990          147 AVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQ-GNAVPVVIMRQG  205 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~-g~~v~l~V~R~g  205 (230)
                      ++|..|.++|||++|| |++||+|++|||.+  +  .++.++...+.... +..+.++|.|.+
T Consensus        29 ~~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~R~~   89 (90)
T 2q9v_A           29 IYIGHIVPLGAADTDGRLRSGDELISVDGTP--VIGKSHQLVVQLMQQAAKQGHVNLTVRQTR   89 (90)
T ss_dssp             EEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHHHHHHTEEEEEEEECC
T ss_pred             EEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEecc
Confidence            7899999999999999 99999999999999  6  67889988887643 458999998853

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.94  E-value=2e-09  Score=80.21  Aligned_cols=58  Identities=19%  Similarity=0.308  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..++... +..+.|+|.|++
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-g~~v~l~v~R~~   98 (105)
T 1wha_A           38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVD--VTEARHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCB--CTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            468899999999999999 99999999999999  665  88988888754 778999999975

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.94  E-value=1.3e-09  Score=80.68  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|++.
T Consensus        30 ~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~   90 (102)
T 2d90_A           30 KGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKS--VEALDHDGVVEMIRK-GGDQTTLLVLDKEA   90 (102)
T ss_dssp             SSEEEECCCTTSTTTTTTCCTTCEEEEESSCB--CTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence            46889999999999999999999999999999  665  6888888876 47899999988654

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=98.94  E-value=3.1e-09  Score=81.96  Aligned_cols=58  Identities=22%  Similarity=0.288  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  +.++..+++... ..+.++|.|..
T Consensus        59 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~  119 (123)
T 2iwq_A           59 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMD--LRDASHEQAVEAIRKAG-NPVVFMVQSII  119 (123)
T ss_dssp             CSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SSEEEEEECCC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            368899999999999999 99999999999999  766  999999998764 48999998854

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=98.94  E-value=9.1e-10  Score=78.50  Aligned_cols=56  Identities=25%  Similarity=0.275  Sum_probs=48.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++  .++...+... +..+.++|.|+
T Consensus        24 ~~~V~~V~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~   81 (83)
T 2kv8_A           24 PCVLSCVMRGSPADFVGLRAGDQILAVNEIN--VKKASHEDVVKLIGKC-SGVLHMVIAEG   81 (83)
T ss_dssp             SCBCCBCCTTSTTTTTTCCTTCEEEEETTEE--CSSCCHHHHHHHHTTC-SSCEEEEEECC
T ss_pred             CeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcC
Confidence            3789999999999999999999999999999  7776  8888877653 46799999885

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=98.93  E-value=1.7e-10  Score=87.30  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=55.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC-CEEEEEEEEecCCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ-GGLINLAVTPRPWQ  218 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~-g~~~~l~l~p~~~~  218 (230)
                      ..++|..|.++|||+++||++||+|++|||.+  +.++  .++...+...  ..+.++|.|+ |+.+.+.+.+..|.
T Consensus        41 ~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~--~~v~l~v~r~~g~~~~~~~~~~~~s  113 (114)
T 1x5n_A           41 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVD--FSNLDHKEAVNVLKSS--RSLTISIVAAAGRELFMTDRSGPSS  113 (114)
T ss_dssp             CSEEEEEECTTSTTTTTTCCTTCEEEEETTEE--TTSCCTTHHHHHHHHC--SSEEEEECSSTTTHHHHSSCCCCSC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcC--CeEEEEEEcCCCCceEEEeccCCCC
Confidence            35889999999999999999999999999999  6665  3466666543  5799999998 87666666555554

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=1.4e-09  Score=80.56  Aligned_cols=57  Identities=23%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  ++.++..++.... ..+.|+|.|++
T Consensus        37 ~~~V~~V~~~spA~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~R~~   95 (100)
T 1whd_A           37 PVRVQAVDSGGPAERAGLQQLDTVLQLNERP--VEHWKCVELAHEIRSCP-SEIILLVWRVS   95 (100)
T ss_dssp             SCBCCBCCTTSHHHHHTCCSSCEEEEETTEE--CTTCCHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECC
Confidence            4678999999999999999999999999999  76  5789888887654 45999999875

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.93  E-value=1.2e-09  Score=85.12  Aligned_cols=58  Identities=24%  Similarity=0.394  Sum_probs=52.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhh-CCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRK-NQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~-~~g~~v~l~V~R~  204 (230)
                      +.++|..|.++|||++|| |++||+|++|||.+  +  .++.++..++.. ..|+.+.|+|.|+
T Consensus        49 ~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           49 PYLQISHLINKGAAASDGILQPGDVLISVGHAN--VLGYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSC--CTTCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CcEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            446799999999999999 99999999999999  7  489999999987 4689999999997

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=6.1e-10  Score=84.65  Aligned_cols=66  Identities=20%  Similarity=0.217  Sum_probs=54.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++...+. ...++.+.|+|.|+++.+++.+
T Consensus        42 ~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~  108 (117)
T 1uit_A           42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGIN--LRSATEQQARLIIGQQCDTITILAQYNPHVHQLSS  108 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEECEETTEE--TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCeEEEEEEECCchhhhhh
Confidence            36889999999999999999999999999999  887766655543 3568899999999887655443

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.93  E-value=7.4e-10  Score=81.94  Aligned_cols=58  Identities=16%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.++.+.. ++.. ..++.+.|+|.|+++
T Consensus        36 g~~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~-~~~~~~~~~~v~l~v~R~g~   94 (101)
T 1uez_A           36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKS--LARVTHAE-AVKALKGSKKLVLSVYSAGR   94 (101)
T ss_dssp             CEEEEEECTTSHHHHHTCCSSCCEEEETTEE--CSSCCHHH-HHHHSSSSSSCCEEECCCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHH-HHHhhcCCCeEEEEEEECCc
Confidence            5789999999999999999999999999999  77776633 3332 456788999999875

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.93  E-value=1e-10  Score=104.24  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=0.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEecCC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPRPW  217 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~~~  217 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.++.++..++..  ++++.|+|.|+|+.++++++|..|
T Consensus       254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~--v~~~~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~p~~~  322 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQS--VVSANDVSDVIKR--ESTLNMVVRRGNEDIMITVIPEEI  322 (332)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhC--CCeEEEEEEECCEEEEEEEEEeee
Confidence            36789999999999999999999999999999  9999999888864  778999999999999999999854

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=98.93  E-value=3.9e-09  Score=76.37  Aligned_cols=57  Identities=23%  Similarity=0.264  Sum_probs=47.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++  .++...+. ..++.+.++|.|+
T Consensus        32 ~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~   90 (91)
T 1m5z_A           32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVR--TRDFDCCLVVPLIA-ESGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence            46889999999999999999999999999999  7664  44445554 3578899999885

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=98.93  E-value=2.6e-09  Score=78.91  Aligned_cols=59  Identities=24%  Similarity=0.237  Sum_probs=50.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|+++
T Consensus        37 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~   98 (101)
T 2jik_A           37 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRN-AGYAVSLRVQHRLE   98 (101)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCCHHHHHHHHHT-CCSEEEEEEEEESC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence            357899999999999999 99999999999999  655  5777777765 47789999998764

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=98.92  E-value=4e-09  Score=76.76  Aligned_cols=59  Identities=25%  Similarity=0.407  Sum_probs=50.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .+.++.++|.|+|+
T Consensus        33 ~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~g~   94 (97)
T 2iwn_A           33 SGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTN--LQGFTNQQAVEVLRH-TGQTVLLTLMRRGE   94 (97)
T ss_dssp             CCCEEEEECTTCHHHHHCCCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred             CCEEEEEeCCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence            357899999999999999 99999999999999  65  45677776665 78899999998764

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.92  E-value=1.5e-09  Score=82.70  Aligned_cols=59  Identities=20%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.. .+..+.|+|.|++..
T Consensus        50 g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  111 (117)
T 1ujd_A           50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIP--LTSKTYEEVQSIISQ-QSGEAEICVRLDLNM  111 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEE--CTTCCHHHHHHHHSC-CSSCEEEEEESSCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--cCCCCHHHHHHHHhc-CCCEEEEEEEECCcc
Confidence            57899999999999999 99999999999999  64  48888888876 677899999998763

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=98.92  E-value=3.6e-09  Score=77.05  Aligned_cols=59  Identities=17%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +  .+++++..+++...+ .+.++|.|...
T Consensus        28 ~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~~~~~   89 (93)
T 3o46_A           28 GAIIVARIMRGGAADRSGLIHVGDELREVNGIP--VEDKRPEEIIQILAQSQG-AITFKIIPGSK   89 (93)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--STTSCHHHHHHHHHHCCE-EEEEEEECC--
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCC-eEEEEEEeCCC
Confidence            357899999999999999 99999999999999  7  789999999987655 88888887543

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=2.8e-09  Score=77.69  Aligned_cols=57  Identities=21%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC-CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD-NLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v-~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  + .+++++..+++.. +.++.++|.|.
T Consensus        29 ~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~--v~~~~~~~~~~l~~~-~~~v~l~v~~~   87 (91)
T 2e7k_A           29 GELVIARILHGGMVAQQGLLHVGDIIKEVNGQP--VGSDPRALQELLRNA-SGSVILKILSG   87 (91)
T ss_dssp             SSEEEEEECSSSHHHHHCCCCTTCEEEEETTEE--CTTCHHHHHHHHHTC-CSSBCEEEECC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            457899999999999987 99999999999999  8 8999999999864 66889988874

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.92  E-value=2.2e-09  Score=81.71  Aligned_cols=64  Identities=16%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLINL  210 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l  210 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.  ++.++..++....+..+.++|.|+++..++
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~~~~  108 (119)
T 1x6d_A           42 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKS--LKGTTHHDALAILRQAREPRQAVIVTRKLTPEAM  108 (119)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEE--CSSCCHHHHHHHHHHTTSSSEEEEEEECCCSSSC
T ss_pred             CCEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCeEEEEEEcCCCccch
Confidence            458899999999999999 99999999999999  65  688998888877777777889998865443

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=98.92  E-value=3.8e-09  Score=81.81  Aligned_cols=59  Identities=20%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|| |++||+|++|||.+  +.  ++.++..+++... |+.+.|+|.|++.
T Consensus        44 ~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~  106 (129)
T 2kpk_A           44 FLQIKSLVLDGPAALDGKMETGDVIVSVNDTC--VLGHTHAQVVKIFQSIPIGASVDLELCRGYP  106 (129)
T ss_dssp             EEEEEEECTTSHHHHHSSCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTEEEEEEEEECSC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCCCeEEEEEEeCCC
Confidence            47899999999999999 99999999999999  65  5889999998765 8899999999863

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.91  E-value=1.3e-09  Score=82.78  Aligned_cols=56  Identities=13%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  +|+++..++....++.+.|+|.|
T Consensus        37 ~v~V~~V~~~spA~~aGL~~GD~Il~InG~~--v~~~~~~d~~~~i~~~~~~~v~l~V~~   94 (111)
T 1vae_A           37 PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD--CKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             SCEECCCCTTSSHHHHHCCTTCEEEEETTEE--CSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence            3678999999999999999999999999999  87  99999999987777788898876

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.91  E-value=2.7e-09  Score=81.36  Aligned_cols=58  Identities=22%  Similarity=0.201  Sum_probs=52.9

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||+++| |++||+|++|||.+  +  .+++++..+++ ..+..+.|+|.|+++
T Consensus        43 ~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~--v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~  103 (117)
T 1v62_A           43 VITIDRIKPASVVDRSGALHPGDHILSIDGTS--MEHCSLLEATKLLA-SISEKVRLEILPVPQ  103 (117)
T ss_dssp             EEEEEECCTTSHHHHHTCCCTTCBEEEETTEE--TTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence            37899999999999999 99999999999999  7  77999999998 478899999999775

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=98.90  E-value=5e-09  Score=78.08  Aligned_cols=60  Identities=23%  Similarity=0.273  Sum_probs=51.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .++.+.++|.|++..
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~  100 (106)
T 3axa_A           38 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRS--LVGLSQERAAELMTR-TSSVVTLEVAKQGAI  100 (106)
T ss_dssp             EEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEECCCSS
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence            457899999999999999 99999999999999  65  57788777765 678999999998753

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=98.90  E-value=2.9e-09  Score=82.42  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=52.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ++++|..|.++|||++|| |++||+|++|||.+  +  .++.++..++... +..+.|+|.|+++
T Consensus        65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~  126 (128)
T 1nf3_C           65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIE--VSGKSLDQVTDMMIAN-SRNLIITVRPANQ  126 (128)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEE--STTCCHHHHHHHHHHT-TTSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence            468899999999999999 99999999999999  6  7899999988754 4579999999874

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=98.90  E-value=6.6e-09  Score=75.28  Aligned_cols=59  Identities=24%  Similarity=0.214  Sum_probs=49.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|.+.
T Consensus        29 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~   90 (92)
T 2qg1_A           29 TGVFVSDIVKGGIADADGRLMQGDQILMVNGED--VRNATQEAVAALLKC-SLGTVTLEVGRIST   90 (92)
T ss_dssp             CSCEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHH-CCSEEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEcccc
Confidence            357899999999999999 99999999999999  64  36777777665 46789999998763

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.90  E-value=4.4e-09  Score=79.56  Aligned_cols=59  Identities=20%  Similarity=0.323  Sum_probs=51.9

Q ss_pred             CceEEEEecCCChhhhcCC-CCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGL-QLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL-~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++||| ++||+|++|||.+  +.  ++.++..++.... ..+.|+|.|+++
T Consensus        48 ~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~-~~v~l~v~r~~~  109 (113)
T 1va8_A           48 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIE--IRGKDVNEVFDLLSDMH-GTLTFVLIPSSG  109 (113)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-EEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEECCc
Confidence            4578999999999999999 9999999999999  76  7889999887654 479999998875

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=2.3e-09  Score=79.35  Aligned_cols=58  Identities=12%  Similarity=0.120  Sum_probs=49.3

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCC-HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL-LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~-~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++| ||++||+|++|||.+  +.+ +.++...++. .++.+.|+|.|+++
T Consensus        36 ~v~V~~V~~~spA~~agGL~~GD~I~~ing~~--v~~~~~~~~~~~~~-~~~~v~l~v~R~~~   95 (100)
T 2edp_A           36 PLTVSKIEDGGKAALSQKMRTGDELVNINGTP--LYGSRQEALILIKG-SFRILKLIVRRRNS   95 (100)
T ss_dssp             EEEECCCCTTSHHHHHTSCCTTCEEEEETTEE--CCSCSHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred             CeEEEEECCCCHHHHcCCCCCCCEEEEECCEE--ccchHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence            3689999999999999 999999999999999  666 4666666665 46789999999875

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=98.89  E-value=1.5e-09  Score=83.28  Aligned_cols=60  Identities=12%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .++|..|.++|||+++ ||++||+|++|||.+  +.  ++.++..+++.. +..+.|+|.|+++..
T Consensus        54 ~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~  116 (120)
T 2iwo_A           54 PIFIAMMHPTGVAAQTQKLRVGDRIVTICGTS--TEGMTHTQAVNLLKNA-SGSIEMQVVAGGDVS  116 (120)
T ss_dssp             EEEEEEECTTSHHHHHTCCCTTCEEEEETTEE--CTTCBHHHHHHHHHHC-CSEEEEEEECCTTSS
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEECCccc
Confidence            4789999999999999 999999999999999  64  478888888765 457999999987644

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=98.89  E-value=2.8e-09  Score=79.50  Aligned_cols=60  Identities=25%  Similarity=0.315  Sum_probs=50.1

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHh-hCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGR-KNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~-~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||+ +||++||+|++|||.+  +.++.++...+. ...++.+.++|.|+++.
T Consensus        39 ~gv~V~~V~~~spA~-agl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   99 (107)
T 2h2b_A           39 TSIVISDVLKGGPAE-GQLQENDRVAMVNGVS--MDNVEHAFAVQQLRKSGKNAKITIRRKKGG   99 (107)
T ss_dssp             CCEEEEEECTTSTTB-TTBCTTCEEEEETTEE--CTTCCHHHHHHHHHTCCSEEEEEEEEESCC
T ss_pred             CCEEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCccHHHHHHHhhCCCCEEEEEEEECCCC
Confidence            368899999999999 9999999999999999  887766655443 35688999999998753

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.88  E-value=2.7e-09  Score=79.80  Aligned_cols=60  Identities=18%  Similarity=0.252  Sum_probs=52.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|++..
T Consensus        42 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~~  104 (108)
T 1q7x_A           42 GGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVS--LEGATHKQAVETLRN-TGQVVHLLLEKGQSP  104 (108)
T ss_dssp             CCCBEEEECTTSTHHHHTCCCSSCEEEEETTEE--CBSCTTSHHHHHHHH-TTSEEEEEEECCCCS
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeCCcc
Confidence            468899999999999999 99999999999999  65  67788777776 478999999998753

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.88  E-value=4.6e-09  Score=78.78  Aligned_cols=60  Identities=17%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||+++| |++||+|++|||.++...++.++..+++...+..+.|+|.|.
T Consensus        44 ~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~  104 (108)
T 2d92_A           44 SVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG  104 (108)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence            457899999999999999 999999999999992224589999999887666899999874

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.88  E-value=8.2e-10  Score=85.23  Aligned_cols=58  Identities=17%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|||++||+|++|||.+  +.  ++.++..+++.. +..+.|+|.|+++
T Consensus        62 gv~V~~V~~~spA~~aGL~~GD~I~~ing~~--v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~  121 (126)
T 2yuy_A           62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGES--VIGKTYSQVIALIQNS-DTTLELSVMPKDS  121 (126)
T ss_dssp             CCCBCCCCSSSHHHHHTCCSSCCCCEETTEE--CSSCCHHHHHHHHHTC-TTEEEEECCCCCC
T ss_pred             CEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            4789999999999999999999999999999  76  899999988764 8899999998764

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.88  E-value=6.7e-09  Score=99.73  Aligned_cols=67  Identities=16%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      +++|..|.++|||++|||++||+|++|||.+  + ++.++..++.. .+|++|.|+|.|+|+.+++++++.
T Consensus       497 gv~V~~V~~~spA~~AGL~~GD~I~aInG~~--v-~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~  564 (597)
T 4fgm_A          497 GLDVLNVYHDESAYHAGLSAGDKIIAIDHLQ--A-TEQSVKRILERYIPGDTVTIHAFRRDELMTLELTWQ  564 (597)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--C-CTTTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECC
T ss_pred             eEEEEEeCCCChHHHCCCCCCCEEEEECCEE--C-CHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence            5789999999999999999999999999999  7 47788888875 578999999999999999999886

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=98.87  E-value=6.2e-09  Score=85.87  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++||++||+|++|||.+  +.+  +.++...++.  |..+.++|.|+|.
T Consensus       110 ~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~--v~~~~~~~~~~~l~~--~~~v~l~v~r~g~  169 (192)
T 3k1r_A          110 CGLFISHLIKGGQADSVGLQVGDEIVRINGYS--ISSCTHEEVINLIRT--EKTVSIKVRHIGL  169 (192)
T ss_dssp             EEEEEEEECTTSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred             CCEEEEEECCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence            35789999999999999999999999999999  766  9999988866  7899999999987

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=98.87  E-value=6e-09  Score=79.22  Aligned_cols=56  Identities=21%  Similarity=0.257  Sum_probs=48.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++++|..|.++|||++|| |++||+|++|||.+  +  .++.++..++.... ..+.++|.+
T Consensus        50 ~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~-~~v~l~v~~  108 (114)
T 2gzv_A           50 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVK-GEVTIHYNK  108 (114)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence            358899999999999999 99999999999999  7  88999999887654 457787765

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.87  E-value=1.8e-09  Score=79.77  Aligned_cols=58  Identities=19%  Similarity=0.338  Sum_probs=50.0

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+. ..+..+.|+|.|++.
T Consensus        37 ~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~   97 (103)
T 1wfv_A           37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGES--TRDMTHARAIELIK-SGGRRVRLLLKRGTG   97 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEE--CSSCCHHHHHHHHH-HHCSEECEEEECTTC
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-cCCCeEEEEEEECCC
Confidence            57889999999999999 99999999999999  654  677777776 457889999999875

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=98.87  E-value=5.4e-09  Score=80.63  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=52.4

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC---CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN---LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~---~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||+++| |++||+|++|||.+  +.   ++.++..+++. .+..+.|+|.|+..
T Consensus        55 gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~~  116 (128)
T 2db5_A           55 DIFVKDVQPGSVADRDQRLKENDQILAINHTP--LDQNISHQQAIALLQQ-TTGSLRLIVAREPV  116 (128)
T ss_dssp             EEEEECCCTTSHHHHTCCCCSSCBEEEESSCB--CSTTSCHHHHHHHHHH-CCSEEEEEEEECCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence            57899999999999999 99999999999999  76   89999998877 67899999999754

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.86  E-value=4.3e-09  Score=79.58  Aligned_cols=61  Identities=30%  Similarity=0.355  Sum_probs=52.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+... +..+.|+|.|++..+
T Consensus        43 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~~~~  106 (116)
T 2dm8_A           43 NAIVIHEVYEEGAAARDGRLWAGDQILEVNGVD--LRNSSHEEAITALRQT-PQKVRLVVYRDEAHY  106 (116)
T ss_dssp             SSEECCCCCSSSHHHHHTCCCTTCEEEEETTEE--CSSSCHHHHHHHHHTC-CSEEEEEEECCSSCC
T ss_pred             CCEEEEEECCCChHHhCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEeCCccc
Confidence            367899999999999999 99999999999999  765  78888877654 478999999987643

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=98.86  E-value=9.3e-09  Score=76.06  Aligned_cols=58  Identities=26%  Similarity=0.298  Sum_probs=49.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +.++|..|.++|||++|| |++||+|++|||.+  +  .++.++...+.. .++.+.++|.|++
T Consensus        35 ~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r~~   95 (104)
T 3i4w_A           35 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKN-AGQTVTIIAQYKP   95 (104)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence            368899999999999999 99999999999999  6  456666666654 5678999999874

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=98.86  E-value=5.1e-09  Score=85.15  Aligned_cols=62  Identities=21%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGLIN  209 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~~~  209 (230)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  |.++...++. .++.+.|+|.|++....
T Consensus       130 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~  194 (196)
T 3gsl_A          130 NSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVG--LEDVMHEDAVAALKN-TYDVVYLKVAKPSNAET  194 (196)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CSSCBHHHHHHHHHS-CCEEEEEEEEEESCCCE
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEEEECCCc--CCCCCHHHHHHHHHc-CCCeEEEEEeCCCCccc
Confidence            357899999999999999 99999999999999  777  9999998865 47889999999876543

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=98.86  E-value=1.1e-08  Score=73.80  Aligned_cols=55  Identities=18%  Similarity=0.218  Sum_probs=47.3

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .++|..|.++|||++| ||++||+|++|||.+  +.  ++.++...+.. .+..+.++|.|
T Consensus        31 g~~V~~V~~~spA~~aggl~~GD~I~~ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~r   88 (90)
T 1qav_A           31 PILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKK-TGKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCCCTTEEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence            5789999999999999 999999999999999  64  57777777765 46789999887

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.85  E-value=3.5e-09  Score=79.13  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhC----CCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKN----QGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~----~g~~v~l~V~R~g  205 (230)
                      |.++|..|.++|||+++| |++||+|++|||.+  +.  +|+++..+++..    .++++.+.|.|.+
T Consensus        32 ~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~r~~   97 (103)
T 1ufx_A           32 PLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLT--LRGKEHREAARIIAEAFKTKDRDYIDFLVTEFN   97 (103)
T ss_dssp             SSCEEEEECTTSHHHHHCSSCTTCBCCEETTEE--CTTCBHHHHHHHHHHHHHCSSCSEEEEEECCCC
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhcccCCCCeEEEEEEEcc
Confidence            556899999999999999 99999999999999  64  599999988764    6778899888864

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.85  E-value=1.9e-08  Score=82.78  Aligned_cols=57  Identities=12%  Similarity=0.165  Sum_probs=50.2

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||++| ||++||+|++|||++  +.++  .++..++.. .+..+.++|.|++
T Consensus        34 ~~~V~~v~~~spA~~aggl~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   93 (200)
T 2qt5_A           34 KPRVSNLRQGGIAARSDQLDVGDYIKAVNGIN--LAKFRHDEIISLLKN-VGERVVLEVEYEL   93 (200)
T ss_dssp             CSEEEEECTTSHHHHTTSCCTTCEEEEETTEE--CTTSCHHHHHHHHHT-CCSEEEEEEEEEC
T ss_pred             CeEEEEECCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEeccC
Confidence            4789999999999999 999999999999999  8777  888876654 5779999999976

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=98.84  E-value=9.8e-09  Score=78.84  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +.++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...++...+ .+.++|.|
T Consensus        45 ~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~l~~~~~-~v~l~v~r  103 (125)
T 3hpk_A           45 PCLYIVQVFDNTPAALDGTVAAGDEITGVNGRS--IKGKTKVEVAKMIQEVKG-EVTIHYNK  103 (125)
T ss_dssp             SSEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHSCS-EEEEEEEE
T ss_pred             CCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEEE
Confidence            457899999999999999 99999999999999  65  78999999887554 59999987

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.83  E-value=1.3e-08  Score=92.69  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=60.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE---EEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG---LINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~---~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.++  .++...+....|+.+.++|.|+|.   .+++++++.
T Consensus        99 ~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~--v~~~~~~~~~~~l~~~~g~~v~l~v~r~g~~~~~~~~~l~r~  172 (388)
T 1fc6_A           99 KDVVVLTPAPGGPAEKAGARAGDVIVTVDGTA--VKGMSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQ  172 (388)
T ss_dssp             SCEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHCBSTTCEEEEEEEETTEEEEEEEEEEECB
T ss_pred             CcEEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhcCCCCEEEEEEEeCCCCcceEEEEEEEc
Confidence            45789999999999999999999999999999  7664  788888887789999999999988   777877664

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=1.8e-08  Score=75.27  Aligned_cols=60  Identities=18%  Similarity=0.353  Sum_probs=49.8

Q ss_pred             CceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++ ||++||+|++|||.++...++.++...++. .+..+.|+|.|.+
T Consensus        41 ~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  101 (107)
T 1uhp_A           41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQVLRRT  101 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEEEeCC
Confidence            45889999999999999 999999999999999222357777777765 4678999998864

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=98.83  E-value=1.1e-08  Score=74.11  Aligned_cols=56  Identities=27%  Similarity=0.380  Sum_probs=48.9

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .++|..|.++|||+++| |++||+|++|||.+  +  .+++++..+++...+ .+.+++.+.
T Consensus        22 gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~-~v~L~v~~~   80 (88)
T 3e17_A           22 QIFVKEMTRTGLATKDGNLHEGDIILKINGTV--TENMSLTDARKLIEKSRG-KLQLVVLRD   80 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEECCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCC-eEEEEEeCC
Confidence            57899999999999999 99999999999999  6  789999999987654 778877653

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=1.1e-08  Score=74.22  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...+... +..+.++|.|+.
T Consensus        30 ~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~   90 (93)
T 2dkr_A           30 SPIYISRVIPGGVADRHGGLKRGDQLLSVNGVS--VEGEQHEKAVELLKAA-QGSVKLVVRSGP   90 (93)
T ss_dssp             CCCEEEEECTTSHHHHHCCCCTTCBEEEETTEE--CTTSCHHHHHHHHHHC-CSEEEEEECCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCcEEEEEEeCC
Confidence            357899999999999996 99999999999999  65  578888887764 457899998864

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.83  E-value=1.1e-08  Score=76.33  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=50.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.. .+..+.|+|.|++
T Consensus        40 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~  100 (107)
T 1wf8_A           40 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS--LVGVTQNFAATVLRN-TKGNVRFVIGREK  100 (107)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEE--CBSCCHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCeEEEEEEeCC
Confidence            467899999999999999 99999999999999  65  57777777766 4789999999864

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=98.83  E-value=7.1e-09  Score=76.11  Aligned_cols=57  Identities=19%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|.
T Consensus        31 ~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~   90 (96)
T 2qkv_A           31 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVSYALFKG-ANGKVSMEVTRP   90 (96)
T ss_dssp             SSEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred             CcEEEEEeCCCChHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence            357899999999999999 99999999999999  654  4555555544 456799999885

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=98.82  E-value=1.1e-08  Score=78.42  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .++|..|.++|||++|| |++||+|++|||.+  +.  ++.++..+++.. +..+.++|.|.
T Consensus        54 gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~~-~~~v~L~v~R~  112 (118)
T 3b76_A           54 PIYVISVEPGGVISRDGRIKTGDILLNVDGVE--LTEVSRSEAVALLKRT-SSSIVLKALEV  112 (118)
T ss_dssp             CEEEEEECTTSHHHHHCSSCTTCEEEEETTEE--GGGSCHHHHHHHHHSC-CSEEEEEEEEE
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            47899999999999999 99999999999999  76  899998888764 67899999874

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.82  E-value=1.2e-08  Score=77.84  Aligned_cols=60  Identities=23%  Similarity=0.242  Sum_probs=51.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.+  +.++...+... +..+.|+|.|++..
T Consensus        47 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~~-g~~v~l~v~R~~~~  109 (120)
T 2eno_A           47 SGIYVSRIKENGAAALDGRLQEGDKILSVNGQD--LKNLLHQDAVDLFRNA-GYAVSLRVQHRLQV  109 (120)
T ss_dssp             CSEEEEEECSSSHHHHSCCSCTTCEEEEETTEE--CCSCCHHHHHHHHHHH-CSEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCcC
Confidence            357899999999999999 99999999999999  655  66777777653 67899999997653

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=98.82  E-value=6.2e-09  Score=77.39  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=47.8

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVI  201 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V  201 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.  ++.++..++....+ .+.|+|
T Consensus        48 ~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~-~v~l~v  103 (104)
T 2z17_A           48 MFTLICKIQEDSPAHCAGLQAGDVLANINGVS--TEGFTYKQVVDLIRSSGN-LLTIET  103 (104)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred             CCeEEEEECCCChHHHcCCCCCCEEEEECCEE--cCCCCHHHHHHHHHhCCC-cEEEEE
Confidence            46889999999999999999999999999999  77  89999999987754 777765

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=98.81  E-value=1.3e-08  Score=79.35  Aligned_cols=58  Identities=16%  Similarity=0.236  Sum_probs=50.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|||++||+|++|||.+  +.  ++.++...++. .+..+.|+|.|.+.
T Consensus        66 gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~  125 (132)
T 3l4f_D           66 LQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR  125 (132)
T ss_dssp             SEEEEEECTTSGGGGGTCCTTCEEEEESSSB--CTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence            5789999999999999999999999999999  65  58888888876 66789999988654

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.81  E-value=1.2e-08  Score=94.94  Aligned_cols=65  Identities=15%  Similarity=0.199  Sum_probs=59.2

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      +++|.+|.++|||+++||++||+|++|||++  +.+++++..++.. .++.+.++|.|+|+.+.+.++
T Consensus       387 Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~--v~~~~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l~  451 (451)
T 3pv2_A          387 GVQVVGASENSAGWRAGIRPGDIIISANKKP--VTDVKSLQTIAQE-KKKELLVQVLRGPGSMYLLVI  451 (451)
T ss_dssp             EEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHTTS-SCSCEEEEEEETTEEEEEEEC
T ss_pred             ceEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHhc-CCCeEEEEEEECCEEEEEEeC
Confidence            5689999999999999999999999999999  9999999999876 678899999999998877663

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=98.80  E-value=1e-08  Score=84.44  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=54.6

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      .++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.. .++.+.|+|.|+++.+
T Consensus       136 g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~  198 (200)
T 2qt5_A          136 PVVITCVRPGGPADREGTIKPGDRLLSVDGIR--LLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM  198 (200)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence            57899999999999999 99999999999999  88  99999999987 7889999999987654

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=98.80  E-value=1.6e-08  Score=73.68  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++ ||++||+|++|||.+  +.+  +.++...+.. .++.+.++|.|+.
T Consensus        35 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~~   93 (95)
T 1mfg_A           35 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV   93 (95)
T ss_dssp             CCEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCBHHHHHHHHHH-CCSEEEEEEEEEC
T ss_pred             CCEEEEEECCCCchhh-CCCCCCEEEEECCEE--cCCCCHHHHHHHhhc-CCCeEEEEEEeCC
Confidence            4588999999999999 999999999999999  655  6677666654 5789999999853

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=98.80  E-value=1.9e-08  Score=74.44  Aligned_cols=53  Identities=13%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+++|..|.++|||++|||++||+|++|||++  +.  +++++..++..   ..+.++|.
T Consensus        35 ~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~--v~~~~~~~l~~~l~~---~~l~ltV~   89 (94)
T 3kzd_A           35 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVR   89 (94)
T ss_dssp             CEEEEEEECTTSHHHHTTCCTTCEEEEETTEE--GGGCCHHHHHHHHHS---SEEEEEEE
T ss_pred             CCeEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC---CeEEEEEE
Confidence            46889999999999999999999999999999  65  68999988863   46677665

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=98.79  E-value=6.4e-09  Score=80.46  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=51.5

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhC------CCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKN------QGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~------~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||+++| |++||+|++|||+.  +.+  +.++..+|+..      .+..|.|+|.|++.
T Consensus        56 gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~  123 (127)
T 1wg6_A           56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGET--LLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG  123 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEE--STTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred             CEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence            57899999999999999 99999999999999  654  77998888753      47899999999764

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=98.79  E-value=1.8e-08  Score=75.03  Aligned_cols=57  Identities=12%  Similarity=0.141  Sum_probs=47.6

Q ss_pred             ceEEEEecCCChhhhcC--CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC---CCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG--LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG--L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~---g~~v~l~V~R~  204 (230)
                      .++|..|.++|||++||  |++||+|++|||.+  +.  ++.++...++...   +..+.|+|.|+
T Consensus        44 ~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~--v~~~~~~~~~~~i~~~~~~~~~~v~l~v~r~  107 (107)
T 3nfk_A           44 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPN  107 (107)
T ss_dssp             EEEEEEECTTSHHHHSSSCCCTTCEEEEETTEE--CTTCCHHHHHHHHHCGGGSBTTBEEEEEECC
T ss_pred             CeEEEEECCCCchHHcCCccCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCcEEEEEEEcC
Confidence            46899999999999999  99999999999999  65  5577777776543   35899998874

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.79  E-value=1.7e-08  Score=77.49  Aligned_cols=67  Identities=22%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEEE-EEEEEe
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGLI-NLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~~-~l~l~p  214 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.  ++.++...++.. +..+.|+|.|++... .+.++|
T Consensus        51 ~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~~-~~~v~l~v~R~~~~~~~~~~~P  121 (124)
T 2daz_A           51 MSIFVVGINPEGPAAADGRMRIGDELLEINNQI--LYGRSHQNASAIIKTA-PSKVKLVFIRNEDAVNQMASGP  121 (124)
T ss_dssp             CCEEEEEECTTSHHHHHTCCCTTCEECEESSCB--CTTSCHHHHHHHHHHS-CSEEEEEEEECTTHHHHBCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEeCCCcccccccCC
Confidence            467899999999999999 99999999999999  64  477777777654 458999999987643 344444

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=98.79  E-value=1.7e-08  Score=72.75  Aligned_cols=55  Identities=22%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             EEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .|..|.++|||++|||++||+|++|||+.+.-.+.+++...|+ ..+..+.++|..
T Consensus        26 ~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p   80 (82)
T 1r6j_A           26 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP   80 (82)
T ss_dssp             EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred             EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence            4789999999999999999999999999933356889999998 567788888764

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=98.78  E-value=1.2e-08  Score=76.60  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=46.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||++|| |++||+|++|||.+  +.+  ..++...+.. .+..+.++|.|.
T Consensus        25 ~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~--v~~~~~~~~~~~~~~-~~~~v~l~v~R~   84 (106)
T 2la8_A           25 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP   84 (106)
T ss_dssp             SSEEEEECCTTSCHHHHTTCCTTCEEEEESSCB--CSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEE--CCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence            357899999999999999 99999999999999  654  4555555544 456799999885

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=98.78  E-value=6.8e-09  Score=80.57  Aligned_cols=59  Identities=19%  Similarity=0.183  Sum_probs=52.3

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||+++ ||++||+|++|||+.  +.  +++++..+++...+..+.++|.|.+.
T Consensus        58 ~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~--v~~~~~~~~~~~l~~~~~~~v~l~v~r~~~  119 (130)
T 1i16_A           58 PLTINRIFKGAASEQSETVQPGDEILQLGGTA--MQGLTRFEAWNIIKALPDGPVTIVIRRKSL  119 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCB--GGGSCHHHHHHHHHTSCSSEEEEEEEEESS
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhCCCceEEEEEEeCCC
Confidence            4789999999999999 999999999999999  54  48999999988777889999998653

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=8.3e-09  Score=78.75  Aligned_cols=56  Identities=13%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.+  |.++..++..   ..+.|+|.|..
T Consensus        44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~---~~v~l~v~R~p  101 (114)
T 2d8i_A           44 RRLYVNSVKETGLASKKGLKAGDEILEINNRA--ADALNSSMLKDFLSQ---PSLGLLVRTYP  101 (114)
T ss_dssp             EEEEEEECCTTSSHHHHTCCTTCCEEEESSCB--GGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEE--CCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence            35789999999999999999999999999999  655  7888888864   48889888854

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.78  E-value=8.7e-09  Score=76.66  Aligned_cols=59  Identities=15%  Similarity=0.218  Sum_probs=49.7

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||++|||++||+|++|||.+  +.  ++.++...+... +..+.++|.|.+.
T Consensus        32 ~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~   92 (106)
T 2eei_A           32 KGVYMTDITPQGVAMRAGVLADDHLIEVNGEN--VEDASHEEVVEKVKKS-GSRVMFLLVDKET   92 (106)
T ss_dssp             CSCEECCCCTTSHHHHHTCCSSEEEEEETTEE--CTTCCHHHHHHHHHHH-CSEEEEEECCTTT
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCeEEEEEEcCch
Confidence            45789999999999999999999999999999  64  567887777653 6788999988764

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=98.77  E-value=2.5e-08  Score=71.45  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=46.6

Q ss_pred             ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .++|..|.++|||++ +||++||+|++|||.+..-.++.++...++. .+..+.++|.+
T Consensus        29 ~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~~   86 (87)
T 4e34_A           29 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVY   86 (87)
T ss_dssp             EEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred             CEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence            368999999999999 7999999999999999222567888888875 45678887764

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=7.9e-09  Score=75.92  Aligned_cols=56  Identities=20%  Similarity=0.247  Sum_probs=48.5

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||+ +||++||+|++|||.+  +.  ++.++...+.. .++.+.++|.|++
T Consensus        32 ~~~V~~V~~~spA~-agL~~GD~Il~ing~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~   89 (96)
T 2edv_A           32 PLTVVAVTAGGSAH-GKLFPGDQILQMNNEP--AEDLSWERAVDILRE-AEDSLSITVVRCT   89 (96)
T ss_dssp             SCBCCCBCSSSSST-TTSCTTCBEEEESSCB--STTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred             CeEEEEECCCCchh-hCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            47899999999996 9999999999999999  64  47777777766 6789999999976

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.75  E-value=1.7e-09  Score=100.44  Aligned_cols=69  Identities=19%  Similarity=0.294  Sum_probs=60.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++...+.. ..|+.+.|+|.|+|+.+++++++.
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~  355 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ  355 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCCC--
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEE--cCCHHHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEe
Confidence            36889999999999999999999999999999  9999999988875 578999999999998887777653

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.74  E-value=5.6e-09  Score=79.46  Aligned_cols=61  Identities=11%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             ceEEEEecCCChhhhc--CCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC---CCeEEEEEEECCEEE
Q 026990          146 FAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ---GNAVPVVIMRQGGLI  208 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A--GL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~---g~~v~l~V~R~g~~~  208 (230)
                      .++|..|.++|||++|  ||++||+|++|||.+  +.  ++.++..++....   +..+.++|.|+....
T Consensus        42 ~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~--v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~~~  109 (119)
T 2cs5_A           42 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRD--IAEHTHDQVVLFIKASCERHSGELMLLVRPNAVYD  109 (119)
T ss_dssp             EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBC--TTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCCCC
T ss_pred             CeEEEEECCCCHHHHhhcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhccccCCCEEEEEEEcccccC
Confidence            4789999999999999  999999999999999  54  5788888777543   358999999986543

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.74  E-value=2e-08  Score=76.64  Aligned_cols=57  Identities=18%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCC--HHHHHHHHhhC---CCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNL--LERLAAEGRKN---QGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~---~g~~v~l~V~R~  204 (230)
                      .++|..|.++|||++| ||++||+|++|||.+  +.+  ++++...++..   .|+.+.|+|.|.
T Consensus        44 ~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~--v~~~~~~~~~~~l~~~~~~~g~~v~l~v~r~  106 (118)
T 1v6b_A           44 KVVVSAVYEGGAAERHGGVVKGDEIMAINGKI--VTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             SEEEEECCTTSHHHHHCSSCTTCEEEEESSCB--CTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence            3789999999999999 999999999999999  654  88888888753   478999999984

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=98.74  E-value=2.1e-08  Score=76.11  Aligned_cols=58  Identities=28%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHH--HHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLER--LAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~d--l~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++|| |++||+|++|||.+  +.++.+  ....+ ...+..+.++|.|++
T Consensus        38 ~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~--v~~~~~~~~~~~~-~~~~~~v~l~v~r~~   98 (119)
T 1tp5_A           38 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIAL-KNAGQTVTIIAQYKP   98 (119)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEE--CTTCCHHHHHHHH-HTSCSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHH-HcCCCeEEEEEEECC
Confidence            468899999999999999 99999999999999  776643  33333 346789999999875

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.73  E-value=5.5e-09  Score=78.55  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++..++.. .+..+.|+|.|+.
T Consensus        44 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~r~~  104 (111)
T 1uju_A           44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQS--LLGLTHGEAVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCB--CTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            357899999999999999 99999999999999  66  78888888865 5788999988864

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=98.73  E-value=2.2e-08  Score=82.35  Aligned_cols=58  Identities=24%  Similarity=0.319  Sum_probs=53.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..++... ++.+.|+|.|++
T Consensus       135 ~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~--v~~~~~~~~~~~l~~~-~~~v~l~v~R~~  195 (196)
T 1p1d_A          135 DPLVISDIKKGSVAHRTGTLELGDKLLAIDNIR--LDSCSMEDAVQILQQC-EDLVKLKIRKDE  195 (196)
T ss_dssp             CCCEEEECCSSSHHHHTSCCCTTCEEEEETTEE--GGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred             CCEEEEEECCCCcHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence            357899999999999999 99999999999999  777  99999999887 889999999976

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=98.73  E-value=7.6e-08  Score=78.70  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEE---CCEEEEEEEEe
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMR---QGGLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R---~g~~~~l~l~p  214 (230)
                      .+++|..|.++|||++ ||++||+|++|||.+  +.+  +.++...+... +..+.|+|.|   +|+..++.+.+
T Consensus        24 ~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~--v~~~~~~~~~~~~~~~-~~~v~l~v~r~~~~G~~~~~~v~~   94 (195)
T 2qbw_A           24 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKTF-QNTVELIIVREVGNGAKQEIRVRV   94 (195)
T ss_dssp             CSEEEEEECTTSTTTT-TCCTTCEEEEETTEE--CTTCCHHHHHHHHHHC-CSEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCEEEEEECCCChHHh-CCCCCCEEEEECCEE--CCCCCHHHHHHHHHcC-CCeEEEEEEEcCCCCCCceeEeEe
Confidence            4689999999999999 999999999999999  654  56666666654 4589999999   88877666654

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=98.73  E-value=3.6e-08  Score=80.27  Aligned_cols=59  Identities=19%  Similarity=0.182  Sum_probs=50.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||+++| |++||+|++|||..+.-.++.++...++. .+..+.|+|.|+
T Consensus       111 ~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R~  170 (170)
T 3egg_C          111 LGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGRE  170 (170)
T ss_dssp             BEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEeC
Confidence            457899999999999999 99999999999999222678888888877 567999999985

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.72  E-value=3.1e-08  Score=72.81  Aligned_cols=57  Identities=18%  Similarity=0.220  Sum_probs=49.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCC-CCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQ-GNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~-g~~v~l~V~R~g~  206 (230)
                      +++|..|.+  +|++|||++||+|++|||.+  +.  ++.++..+++..+ ++.+.|+|.|+++
T Consensus        33 Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~--v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           33 GQRVKQILD--IQGCPGLCEGDLIVEINQQN--VQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             EEEEEEESC--GGGSTTCCSSCEEEEETTEE--CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CEEEEEEec--ccccCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            578889988  47899999999999999999  65  4699999998764 8999999999875

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=98.71  E-value=2.4e-08  Score=75.69  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=50.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.  ++.++...+.. .++.+.|+|.|...
T Consensus        50 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~r~~~  111 (117)
T 2ehr_A           50 KGIFIKQVLEDSPAGKTNALKTGDKILEVSGVD--LQNASHSEAVEAIKN-AGNPVVFIVQSLSS  111 (117)
T ss_dssp             CSEEEEEECSSSTTTSSCSCCTTCEEEEESSCB--CTTCCHHHHHHHHHT-SCSSEEEEECCBSC
T ss_pred             CCEEEEEeCCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence            468899999999999999 99999999999999  64  47787777765 57889999987543

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=98.71  E-value=5.2e-08  Score=72.38  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             ceEEEEecCCChhhhc-CCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAED-GLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A-GL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||+++ ||++||+|++|||.++...++.++..+++... ..+.++|.|...
T Consensus        36 ~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~~~~   96 (103)
T 2dc2_A           36 PILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR-GEIEFEVVYVAL   96 (103)
T ss_dssp             EEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC-SEEEEEEEECC-
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEecCC
Confidence            4689999999999995 99999999999999922245889988887654 488898888643

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=98.71  E-value=2.1e-08  Score=74.22  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||++ ||++||+|++|||.+  +.+  +.++...+.. .+..+.++|.|+.
T Consensus        43 ~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~--v~~~~~~~~~~~~~~-~g~~v~l~v~R~~  101 (103)
T 1n7t_A           43 DGIFVTRVQPEGPASK-LLQPGDKIIQANGYS--FINIEHGQAVSLLKT-FQNTVELIIVREV  101 (103)
T ss_dssp             CSEECCCBSSSSTTSS-SCCTTCEEEEETTEE--CSSCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred             CCEEEEEECCCCchHH-CCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-CCCeEEEEEEecC
Confidence            4578999999999999 999999999999999  654  7777777763 5788999999863

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.67  E-value=1.1e-09  Score=92.56  Aligned_cols=68  Identities=22%  Similarity=0.314  Sum_probs=58.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeE-EEEEEECCEEE--EEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAV-PVVIMRQGGLI--NLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v-~l~V~R~g~~~--~l~l~p~  215 (230)
                      ++++|..|.++|||+++||++||+|++|||..  +.  ++.++..++... |..+ .++|.|+|+.+  ++.++|.
T Consensus        33 ~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~--V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g~~~~~~v~v~p~  105 (216)
T 2krg_A           33 PGQFIRSVDPDSPAEASGLRAQDRIVEVNGVC--MEGKQHGDVVSAIRAG-GDETKLLVVDRETDEFFKKCRVIPS  105 (216)
T ss_dssp             CSCBEEEECTTSHHHHHTCCTTCBCCEETTEE--CTTCCTHHHHHHHHHH-CSEEEEEECCHHHHHHHHHHTCCCC
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEEECCEEEEEEEEEEEe
Confidence            36789999999999999999999999999999  77  899999888765 7788 89999988765  5555554

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=98.65  E-value=1e-08  Score=93.48  Aligned_cols=80  Identities=18%  Similarity=0.230  Sum_probs=54.5

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhC-CCCeEEEEEEECCEEEEEEEEecCCCC
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKN-QGNAVPVVIMRQGGLINLAVTPRPWQG  219 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~-~g~~v~l~V~R~g~~~~l~l~p~~~~g  219 (230)
                      .|+++|..|.+||||++|| |++||+|++|||.+  +.+|  .++...+... .+..+.++|.|++...++.+...  ..
T Consensus       231 ~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~--v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~~~~~v~l~~~--~~  306 (388)
T 3suz_A          231 LPTVILANMMNGGPAARSGKLSIGDQIMSINGTS--LVGLPLATCQGIIKGLKNQTQVKLNIVSCPPVTTVLIKRP--DL  306 (388)
T ss_dssp             SCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEE--CSSCCSTTHHHHTTTCTTCSCEEEEEEECCSCC-----------
T ss_pred             CCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEE--ccCCCHHHHHHHHHhccCCCccccccccccccceeeEeec--CC
Confidence            3568899999999999999 99999999999999  7776  6777777764 56779999999887776666332  12


Q ss_pred             cceeeEEE
Q 026990          220 RGLLGCHF  227 (230)
Q Consensus       220 ~g~LG~~~  227 (230)
                      .+.||+.+
T Consensus       307 ~~~lG~~i  314 (388)
T 3suz_A          307 KYQLGFSV  314 (388)
T ss_dssp             --------
T ss_pred             CCccceEE
Confidence            23466654

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=98.63  E-value=4.8e-08  Score=74.09  Aligned_cols=59  Identities=24%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      ..++|..|.++|||+ +||++||+|++|||.+  +.  ++.++...+.. .++.+.|+|.|.+..
T Consensus        46 ~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~--v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           46 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTP--MEDVLHSFAVQQLRK-SGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CBCEEEEECTTSSHH-HHBCTTCEEEEESSCB--CBTCCHHHHHHHHHH-SCSEEEEEEEEEEEC
T ss_pred             CCEEEEEECCCCccc-ccCCCCCEEEEECCEE--CCCcCHHHHHHHHhc-CCCeEEEEEEECCcc
Confidence            357899999999997 9999999999999999  64  46777777766 578999999996553

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=98.63  E-value=3.9e-08  Score=73.72  Aligned_cols=59  Identities=25%  Similarity=0.288  Sum_probs=48.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.++  .++...+. ..+..+.++|.|++.
T Consensus        39 ~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~~~-~~~~~v~l~v~r~~~  100 (113)
T 1um7_A           39 EGIFVSFILAGGPADLSGELRRGDRILSVNGVN--LRNATHEQAAAALK-RAGQSVTIVAQYRPE  100 (113)
T ss_dssp             CCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCB--CTTCCHHHHHHHHH-SCCSEEEEEEECCHH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHH-hCCCcEEEEEEECcc
Confidence            457789999999999999 99999999999999  6654  66666665 457889999988653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.63  E-value=6.1e-08  Score=88.58  Aligned_cols=59  Identities=24%  Similarity=0.360  Sum_probs=53.5

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhh-CCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRK-NQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~-~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.+||||++|||++||+|++|||.+  +.  +++++...+.. ..|+.+.|+|.|++
T Consensus        31 ~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~--v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~   92 (391)
T 3tsz_A           31 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK   92 (391)
T ss_dssp             TEEEEEEECTTCHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence            46889999999999999999999999999999  65  49999999987 68899999999975

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.59  E-value=1.5e-07  Score=89.31  Aligned_cols=68  Identities=18%  Similarity=0.210  Sum_probs=56.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHH----------HHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLE----------RLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~----------dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      .++.|..|.++|||+++ |++||+|++|||++  +.+..          +|..++.. .+|+++.|+|.|+|+.++++++
T Consensus       277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~--V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vt  353 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLH--VGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVV  353 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-CCTTCEEEEETTEE--CBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEE
T ss_pred             CceeeecccCCChHHhC-ccCCCEEEEECCEE--eCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEE
Confidence            37899999999999886 99999999999999  64422          24555654 6899999999999999998887


Q ss_pred             ec
Q 026990          214 PR  215 (230)
Q Consensus       214 p~  215 (230)
                      ..
T Consensus       354 l~  355 (539)
T 4fln_A          354 LR  355 (539)
T ss_dssp             CB
T ss_pred             Ec
Confidence            64

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.58  E-value=2.5e-08  Score=91.56  Aligned_cols=57  Identities=18%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.++|||++|||++||+|++|||.+  +.+++ +..++.. .|.++.|+|.|+|+
T Consensus        91 ~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~--v~~~~-~~~~l~~-~g~~v~l~v~R~g~  147 (403)
T 3k50_A           91 NALISYVVPGSPAEEAGLQRGHWIMMMNGDY--ITKKV-ESELLQG-STRQLQIGVYKEVV  147 (403)
T ss_dssp             EEEEEEECTTSHHHHTTCCTTCEEEEETTBC--BCTTT-GGGGTSC-SCEEEEEEEEEEEC
T ss_pred             eEEEEEeCCCChHHHcCCCCCCEEEEECCEE--ccchh-HHHHhhC-CCCEEEEEEEeCCc
Confidence            4789999999999999999999999999999  77774 5566666 88999999999764

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=98.52  E-value=1.6e-07  Score=77.25  Aligned_cols=57  Identities=19%  Similarity=0.131  Sum_probs=48.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ..++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..+++. .++.+.|+|.|.
T Consensus       136 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~~~~~~l~~-~~~~v~L~V~R~  195 (206)
T 3r0h_A          136 IGCTIADLIQGQYPEIDSKLQRGDIITKFNGDA--LEGLPFQVCYALFKG-ANGKVSMEVTRP  195 (206)
T ss_dssp             SCEEEEEECTTSCHHHHHHCCTTCEEEEETTEE--CTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred             ceEEEEEECCCChHHHcCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence            457899999999999999 99999999999999  764  5777777765 456899999884

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.47  E-value=2.8e-07  Score=86.06  Aligned_cols=59  Identities=24%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCC--HHHHHHHHhh-CCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNL--LERLAAEGRK-NQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~-~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.+||||++|||++||+|++|||..  +.+  +.++...|.. ..|..+.|+|.|++
T Consensus        23 ~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~--v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g   84 (468)
T 3shw_A           23 VGIFVAGVLEDSPAAKEGLEEGDQILRVNNVD--FTNIIREEAVLFLLDLPKGEEVTILAQKKK   84 (468)
T ss_dssp             TEEEEEEECSSSHHHHTTCCTTEEEEEETTEE--CTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            46889999999999999999999999999999  755  9999999887 47889999999965

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.44  E-value=2.4e-08  Score=92.72  Aligned_cols=64  Identities=20%  Similarity=0.270  Sum_probs=0.0

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      +++|..|.++|||+++||++||+|++|||.+  +.+++++..++....+ .+.|+|.|+|+.+.+.+
T Consensus       384 gv~V~~V~~gspA~~aGL~~GDiI~~vng~~--v~~~~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l  447 (448)
T 1ky9_A          384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDSKPS-VLALNIQRGDSTIYLLM  447 (448)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             eEEEEEecCCCHHHHcCCCCCCEEEEECCEE--CCCHHHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence            4678999999999999999999999999999  9999999998886555 88999999998776654

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=98.42  E-value=1.1e-06  Score=66.97  Aligned_cols=58  Identities=22%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhC-CCCeEEEEEEECCEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKN-QGNAVPVVIMRQGGLI  208 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~-~g~~v~l~V~R~g~~~  208 (230)
                      ..|..|.+  |++.|||++||+|++|||.+  +.  ++.++...|+.. .|..+.|+|.|++...
T Consensus        36 ~~V~~I~~--~~~~aGL~~GD~Il~VNG~~--v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~~   96 (113)
T 3soe_A           36 QKVKMILD--SQWCQGLQKGDIIKEIYHQN--VQNLTHLQVVEVLKQFPVGADVPLLILRGGPPS   96 (113)
T ss_dssp             EEEEEESC--GGGSTTCCTTCEEEEETTEE--CTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC-
T ss_pred             cEEEEecC--hHHhCCCCCCCEEEEECCEE--CCCCCHHHHHHHHHcCCCCCEEEEEEEECCccC
Confidence            45777776  68999999999999999999  65  678999999875 5889999999998643

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=97.79  E-value=2.8e-08  Score=75.35  Aligned_cols=54  Identities=20%  Similarity=0.296  Sum_probs=43.8

Q ss_pred             ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCC--CCHHHHHHHHhhCCCCeEEEEEE
Q 026990          146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGD--NLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v--~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .++|..|.++|||++ |||++||+|++|||.+  +  .++.++...++.. +..+.|+|.
T Consensus        54 gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~--v~~~~~~~~~~~l~~~-~~~v~l~V~  110 (112)
T 2lob_A           54 PILISEIHPGQPADRCGGLHVGDAILAVNGVN--LRDTKHKEAVTILSQQ-RGEIEFEVV  110 (112)
Confidence            468999999999999 9999999999999999  6  5577877777643 334666654

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=98.40  E-value=4.1e-07  Score=79.02  Aligned_cols=58  Identities=17%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ceEEEEecCCChhhh-cCCCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAE-DGLQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~-AGL~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.++|||++ +||++||+|++|||++  +.+  +.++..+++.. +..+.|+|.|.++
T Consensus       104 gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~--v~~~t~~e~v~~l~~~-g~~V~L~V~R~~~  164 (263)
T 1z87_A          104 PILISKIFKGLAADQTEALFVGDAILSVNGED--LSSATHDEAVQALKKT-GKEVVLEVKYMKE  164 (263)
T ss_dssp             EEEEEECCTTSHHHHCTTCCSSCEEEEESSCB--CTTSCHHHHHHHHHHC-CSCCCEEEECCSS
T ss_pred             CEEEEEECCCCHHHHhCCCCCCCEEEEECCEE--CCCcCHHHHHHHHhcC-CCeEEEEEEeCcc
Confidence            478999999999999 7999999999999999  654  78888888775 6789999999754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=98.27  E-value=1e-07  Score=76.37  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=40.6

Q ss_pred             EEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEe
Q 026990          148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTP  214 (230)
Q Consensus       148 ~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p  214 (230)
                      +|..|.++|||+++||++||+|++|||.+  +.++.          ++.+.+.+.|+|+.+.+.++|
T Consensus       110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~--v~~~~----------~~~v~~~v~r~g~~~~l~v~~  164 (166)
T 1w9e_A          110 KITSIVKDSSAARNGLLTEHNICEINGQN--VIGLK----------DSQIADILSTSGTVVTITIMP  164 (166)
T ss_dssp             EEEEECTTSHHHHTTCCSSEEEEEETTEE--CTTCC----------HHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEEccCCHHHHcCCCCCCEEEEECCEE--CCCCC----------hHHHHHHHhhCCCEEEEEEEE
Confidence            78999999999999999999999999999  76652          122333344555555555554

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.24  E-value=2.4e-06  Score=83.54  Aligned_cols=59  Identities=25%  Similarity=0.391  Sum_probs=49.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEECCE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .+++|..|.+||||++|| |++||+|++|||..  +.++  .++...+.. .|..+.|+|.|++.
T Consensus        89 ~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~--v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~  150 (721)
T 2xkx_A           89 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVD--VREVTHSAAVEALKE-AGSIVRLYVMRRKP  150 (721)
T ss_pred             CCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEE--CCCCCHHHHHHHhhc-cccccceEEEeccc
Confidence            457899999999999999 99999999999999  6655  566666654 57789999999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.22  E-value=1.9e-06  Score=86.20  Aligned_cols=67  Identities=13%  Similarity=0.107  Sum_probs=59.0

Q ss_pred             CceEEEEecCC--------ChhhhcC--CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC-EEEEEEEE
Q 026990          145 PFAVIDEITDA--------SPAAEDG--LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLAVT  213 (230)
Q Consensus       145 p~~~V~~V~~~--------SPA~~AG--L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g-~~~~l~l~  213 (230)
                      ..++|..|.++        |||++||  |+ ||+|++|||++  +..+.++...+....|+.+.|+|.|++ +.++++++
T Consensus       748 ~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~--~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~~~~~  824 (1045)
T 1k32_A          748 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMID  824 (1045)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEE
T ss_pred             CEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEE--ccchhhHHHhhcCCCCCEEEEEEECCCCceEEEEEE
Confidence            45788999988        9999999  99 99999999999  777778888888888999999999987 56778887


Q ss_pred             e
Q 026990          214 P  214 (230)
Q Consensus       214 p  214 (230)
                      |
T Consensus       825 ~  825 (1045)
T 1k32_A          825 I  825 (1045)
T ss_dssp             C
T ss_pred             E
Confidence            6

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=98.07  E-value=2.5e-05  Score=57.66  Aligned_cols=58  Identities=12%  Similarity=0.134  Sum_probs=48.0

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R  203 (230)
                      ..+|..+.++|||++.| |++||.|++|||+...-.+..++...|++. .|.++.+++.+
T Consensus        29 ~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~   88 (95)
T 3gge_A           29 YAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIE   88 (95)
T ss_dssp             CCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             cEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEEC
Confidence            35799999999999987 899999999999993335678999999874 46778877765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.00  E-value=1.3e-05  Score=78.39  Aligned_cols=58  Identities=26%  Similarity=0.296  Sum_probs=50.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCC--HHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNL--LERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~--~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.++|||+++| |++||+|++|||.+  +.+  +.++..+++.. +..+.+.|.|+.
T Consensus       331 ~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~--v~~~~~~e~~~~l~~~-~~~v~L~v~r~~  391 (721)
T 2xkx_A          331 EGIFISFILAGGPADLSGELRKGDQILSVNGVD--LRNASHEQAAIALKNA-GQTVTIIAQYKP  391 (721)
T ss_pred             CCeEEEEeCCCChHHhcCCCccCCEEEEECCEE--CCCCCHHHHHHHHHhc-CCeEEEEEEeCc
Confidence            357899999999999999 99999999999999  655  89999988764 677899998864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=97.54  E-value=1.2e-05  Score=73.16  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCC--CHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDN--LLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~--~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+|..|.++|||+++||++||+|++|||.+  +.  +++++...++. .+..+.++|.+.
T Consensus       317 g~I~~V~~gs~A~~aGL~~GD~Il~VNg~~--v~~~s~~~~~~~l~~-~~~~v~L~V~p~  373 (388)
T 3suz_A          317 GIICSLMRGGIAERGGVRVGHRIIEINGQS--VVATAHEKIVQALSN-SVGEIHMKTMPA  373 (388)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CEEEEeecCCHHHHcCCCCCCEEEEECCEE--CCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence            368899999999999999999999999999  64  56777777765 345667766543

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00018  Score=68.26  Aligned_cols=62  Identities=13%  Similarity=0.048  Sum_probs=53.2

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL  210 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l  210 (230)
                      .++|..|.++++|..+|+++||+|++|||++  +.++.+|.+++....++.+.+.+. ++..+.+
T Consensus       416 gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~--V~s~~~l~~~l~~~k~~~l~~~~~-~~~~ivL  477 (539)
T 4fln_A          416 IVILSQVLANEVNIGYEDMNNQQVLKFNGIP--IRNIHHLAHLIDMCKDKYLVFEFE-DNYVAVL  477 (539)
T ss_dssp             CEEEEEECCCGGGTTCSSCCSEEEEEETTEE--CCSHHHHHHHHHTCCSSEEEEEET-TSCEEEE
T ss_pred             EEEEEEecCCchhhhcCCCCCCEEEeECCEE--cCCHHHHHHHHHHcCCCeEEEEEC-CCEEEEE
Confidence            5789999999999999999999999999999  999999999999888877777653 4554433

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=91.99  E-value=0.34  Score=28.35  Aligned_cols=30  Identities=17%  Similarity=0.313  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~   33 (230)
                      .++-+++.+|+.+|+++|+|...|-+.|.+
T Consensus         4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll~~   33 (34)
T 2oxj_A            4 XQLEXKVXELLXKNXHLEXEVXRLKXLVXE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence            357789999999999999999999999953

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=91.45  E-value=0.4  Score=27.98  Aligned_cols=30  Identities=20%  Similarity=0.356  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~   33 (230)
                      +++-+++.+|+.++.++|.|...|.+.|.+
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~   32 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLVGE   32 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence            357789999999999999999999999853

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=90.99  E-value=0.5  Score=27.50  Aligned_cols=28  Identities=14%  Similarity=0.192  Sum_probs=25.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      ++-+++.+|+.+|.++|.|...|-+.|.
T Consensus         4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            4 XIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            5678999999999999999999999985

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=89.25  E-value=0.84  Score=26.73  Aligned_cols=30  Identities=13%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~   33 (230)
                      .++-+++.+|+.++.+||.|+..|.+.|..
T Consensus         4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~   33 (34)
T 1uo4_A            4 KQIEDKGEEILSKLYHIENELARIKKLLGE   33 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence            357789999999999999999999999853

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=88.93  E-value=0.9  Score=26.53  Aligned_cols=28  Identities=11%  Similarity=0.181  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      ++-+++.+|+.+|.++|.|...|-+.|.
T Consensus         5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            5 QIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            5678999999999999999999999985

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=88.77  E-value=0.84  Score=26.75  Aligned_cols=29  Identities=10%  Similarity=0.259  Sum_probs=25.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      .++-+++.+|+.++.+||.|...|-+.|.
T Consensus         4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            4 KQIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            35778999999999999999999999884

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=86.09  E-value=1.7  Score=25.28  Aligned_cols=28  Identities=11%  Similarity=0.023  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            5 NLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         5 ~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      ++-+++.+|..+|.++|.|+..|-.+|.
T Consensus         4 QLEdKVEell~~~~~le~EV~Rl~~ll~   31 (33)
T 2wq1_A            4 QLEDKIEENTSKIYHNTNEIARNTKLVG   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            5778999999999999999999999884

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=84.15  E-value=2.2  Score=25.23  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=26.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~   33 (230)
                      .++.+++.+|..++.++|.|...|-..|.+
T Consensus         4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            4 KQLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            367889999999999999999999998854

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=83.75  E-value=2.4  Score=24.78  Aligned_cols=29  Identities=7%  Similarity=0.117  Sum_probs=25.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      .++-+++.+|+.++..+|.|+..+..+|-
T Consensus         4 nQledKvEel~~~~~~l~nEv~Rl~~lLg   32 (34)
T 2r2v_A            4 KQVADKLEEVASKLYHNANELARVAKLLG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            35778999999999999999999999883

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=83.64  E-value=2.5  Score=24.71  Aligned_cols=29  Identities=10%  Similarity=0.166  Sum_probs=26.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLS   32 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~   32 (230)
                      .++-+++.+|..+|.++|.|...|.+.|.
T Consensus         4 nQLEdkVEeLl~~~~~Le~eV~RL~~ll~   32 (34)
T 2hy6_A            4 KQLADAVEELASANYHLANAVARLAKAVG   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            46778999999999999999999999884

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=83.36  E-value=2.1  Score=25.32  Aligned_cols=30  Identities=17%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026990            4 TNLKAEIMSLMEKRSALEADMNAIIDRLSQ   33 (230)
Q Consensus         4 ~~~~~~~~~L~~~k~~iE~el~~l~~~L~~   33 (230)
                      .++-+++.+|..+|.++|.|...|-..|.+
T Consensus         4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A            4 KQLEAEVEEIESEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            357789999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	230
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	3e-05
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	4e-04
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	5e-04
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	0.001
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	0.003
d1sota1	99	b.36.1.4 (A:255-353) Stress sensor protease DegS,	0.004

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206
           A I E+     AA  G+  G  V K       ++    +AA   K  G  V +      G
Sbjct: 18  AKIVEVVAGGAAANAGVPKGVVVTKVDD-RPINSADALVAAVRSKAPGATVALTFQDPSG 76

Query: 207 -LINLAVT 213
               + VT
Sbjct: 77  GSRTVQVT 84

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 12/80 (15%), Positives = 22/80 (27%), Gaps = 7/80 (8%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
             ID +   SPA++  L  G  +                 L      + G  + +   + 
Sbjct: 5   VQIDSVVPGSPASK-VLTPGLVIESINGMPTSNLTTYSAAL---KTISVGEVINITTDQG 60

Query: 205 GGLINLAVTPRPWQGRGLLG 224
              +     P     R  +G
Sbjct: 61  TFHLKTGRNPNN-SSRAYMG 79

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            +I ++   SPA   GL+ GD +L  G   V+  +++ E +         + + V I R 
Sbjct: 33  VLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRT------QSQLAVQIRRG 86

Query: 205 GGLINLAVTP 214
              + L VTP
Sbjct: 87  RETLTLYVTP 96

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 34.5 bits (79), Expect = 0.001
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFG--TVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ 204
            V++ +   +PAA+ GL+ GD ++      V+    L + L ++        + + I R 
Sbjct: 27  VVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKVLDSKPSV-----LALNIQRG 81

Query: 205 GGLINL 210
              I L
Sbjct: 82  DSTIYL 87

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 148 VIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL 207
            + ++T  S A + GL+ GDQ+L+F  +       ++ A      Q + + ++      +
Sbjct: 45  YVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQ-ARLIIGQQCDTITILAQYNPHV 103

Query: 208 INLAVTPR 215
             L+   R
Sbjct: 104 HQLSSHSR 111

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG 206
            V++E++   PAA  G+Q+ D ++     +   + LE +        G+ +PVV+MR   
Sbjct: 28  IVVNEVSPDGPAANAGIQVNDLIISVDN-KPAISALETMDQVAEIRPGSVIPVVVMRDDK 86

Query: 207 LINLAVTP--RP 216
            + L VT    P
Sbjct: 87  QLTLQVTIQEYP 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.49
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.44
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	99.43
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	99.34
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.32
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.31
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	99.29
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.26
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	99.15
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.98
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	98.93
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	98.93
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	98.89
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	98.87
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	98.84
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.83
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	98.83
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	98.82
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	98.81
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	98.79
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	98.76
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	98.74
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	98.73
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	98.72
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	98.71
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	98.71
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	98.7
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	98.68
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.67
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	98.67
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	98.66
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	98.66
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.66
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	98.66
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	98.66
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	98.66
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	98.65
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	98.65
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	98.61
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	98.61
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	98.59
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.59
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	98.58
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	98.56
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	98.54
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	98.54
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	98.53
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	98.53
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.52
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	98.51
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	98.51
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	98.5
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.49
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	98.49
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	98.48
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	98.45
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	98.44
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	98.43
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	98.42
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	98.41
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	98.34
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	98.33
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	98.3
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	97.82

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.6e-14  Score=102.04  Aligned_cols=67  Identities=28%  Similarity=0.327  Sum_probs=62.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|.+|.++|||++|||++||+|++|||.+  +.+++++...++  .|+++.++|.|+|+.++++++|.
T Consensus        31 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~--V~s~~dl~~~l~--~g~~v~l~v~R~g~~~~~~v~pe   97 (100)
T d1lcya1          31 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQM--VQNAEDVYEAVR--TQSQLAVQIRRGRETLTLYVTPE   97 (100)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEE--CCSHHHHHHHHT--TCSSEEEEEEETTEEEEEEECCE
T ss_pred             CcEEEEEECCCchHhhcCCCCCcEEEEECCEE--cCCHHHHHHHhc--CCCEEEEEEEECCEEEEEEEEee
Confidence            46889999999999999999999999999999  999999999884  67899999999999999999985

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=4.7e-13  Score=96.03  Aligned_cols=69  Identities=28%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEE-CCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMR-QGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R-~g~~~~l~l~p~  215 (230)
                      .+++|.+|.|+|||++|||++||+|++|||.+  +.++.++...+.. .+|+.+.|+|.| +|+.++++++..
T Consensus        16 ~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~--i~~~~~~~~~i~~~~~g~~v~l~v~r~~g~~~~v~vtL~   86 (88)
T d2z9ia1          16 LGAKIVEVVAGGAAANAGVPKGVVVTKVDDRP--INSADALVAAVRSKAPGATVALTFQDPSGGSRTVQVTLG   86 (88)
T ss_dssp             CSEEEEEECTTSTTGGGTCCTTCEEEEETTEE--CCSHHHHHHHHHTSCTTCEEEEEEEETTTEEEEEEEECE
T ss_pred             CcEEEEEECCCCHHHHcCCCCCCEEEEeCCCc--CCcHHHHHHHHHhCCCCCEEEEEEEECCCCEEEEEEEEc
Confidence            57899999999999999999999999999999  9999999988865 578999999998 688888888763

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.43  E-value=1.3e-13  Score=102.10  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEecCCCCcceee
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPRPWQGRGLLG  224 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~~~~g~g~LG  224 (230)
                      ++.|.+|.++|||+++ |++||+|++|||++  +.+|.+|..++.. .+|+.+.|+|.|+++.+++...|.. .+++.+|
T Consensus         4 Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~--v~~~~~l~~~i~~~~~G~~v~l~v~R~~~~~~l~~~p~~-~~~~~iG   79 (103)
T d2hgaa1           4 GVQIDSVVPGSPASKV-LTPGLVIESINGMP--TSNLTTYSAALKTISVGEVINITTDQGTFHLKTGRNPNN-SSRAYMG   79 (103)
T ss_dssp             CEEEEEECSSSGGGGT-SCTTCEEEEETTEE--CSSHHHHHHHHTTCCTTCEEEEEETTEEEEEECCBCSSS-CCSCBCC
T ss_pred             cEEEEEECCCChHHhc-CCCCCEEEEECCEE--cCCHHHHHHHHhhCCCCCEEEEEEEECCEEEEEEeccCC-CCceEEE
Confidence            6899999999999875 99999999999999  9999999999986 4699999999998887777666653 4678899


Q ss_pred             EEEE
Q 026990          225 CHFR  228 (230)
Q Consensus       225 ~~~~  228 (230)
                      +.+.
T Consensus        80 i~~~   83 (103)
T d2hgaa1          80 IRTS   83 (103)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            8764

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=99.34  E-value=2.2e-12  Score=92.51  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=62.9

Q ss_pred             CCceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVT  213 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~  213 (230)
                      ..+..|..+.++|||++|||++||+|++|||.+  +.++.++..++.. ..++++.++|.|+|+..++++.
T Consensus        18 ~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~--v~~~~~~~~~~~~~~~~~~~~l~v~R~g~~~~i~v~   86 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIGLQDGDMAVALNGLD--LTDPNVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ   86 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTTCCTTCEEEEETTEE--TTCHHHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEecCCCCCHHHHCCCCCCCEEEEECCEE--eecHHHHHHHHHhhccccccEEEEEECCEEEEEEEE
Confidence            457889999999999999999999999999999  9999999999876 5789999999999999998875

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=6.1e-13  Score=95.55  Aligned_cols=63  Identities=21%  Similarity=0.270  Sum_probs=57.0

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLINL  210 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~~l  210 (230)
                      .+++|.+|.++|||++|||++||+|++|||++  +.+++++..++.. .+..+.++|.|+|+.+++
T Consensus        25 ~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~--v~~~~~~~~~l~~-~~~~v~l~v~R~~~~~~l   87 (88)
T d1ky9b2          25 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQA--VKNIAELRKVLDS-KPSVLALNIQRGDSTIYL   87 (88)
T ss_dssp             SCCCBCCCCSSCTTGGGTCCSSCEEEEETTEE--CSSHHHHHHHTTT-CCSCCCEEEESSSCEEEE
T ss_pred             CeEEEEEECCCCHHHHcCCCCCcEEEEECCEE--cCCHHHHHHHHHh-CCCEEEEEEEECCEEEEE
Confidence            46889999999999999999999999999999  9999999998865 556799999999988765

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.31  E-value=1e-11  Score=89.77  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGL  207 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~  207 (230)
                      .++|..|.++|||++|||++||+|++|||+++.-.+..++...++..+|..+.|+|.|.|..
T Consensus        20 ~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~~   81 (92)
T d1fc6a3          20 DVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPGAP   81 (92)
T ss_dssp             CEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETTEE
T ss_pred             eEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEECCCc
Confidence            47889999999999999999999999999992223678888888878899999999998764

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.3e-13  Score=99.08  Aligned_cols=69  Identities=25%  Similarity=0.390  Sum_probs=57.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEEEec
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAVTPR  215 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l~p~  215 (230)
                      .+++|.+|.++|||++|||++||+|++|||.+  +.++.++...+.. ..|+.+.++|.|+|+.+++++++.
T Consensus        26 ~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~   95 (99)
T d1sota1          26 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKP--AISALETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQ   95 (99)
T ss_dssp             -CEECCCCCSSSTTTSSSCCTTCEECBSSSSB--CCCSHHHHHHHHHSCTTCEEEECC-----CCCEEEECE
T ss_pred             CccEEEEecCCCCHHHcCCCcceEEEEECCEe--cccHHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEe
Confidence            46889999999999999999999999999999  9999999888865 678999999999999988888764

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.4e-13  Score=97.42  Aligned_cols=66  Identities=20%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhh-CCCCeEEEEEEECCEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRK-NQGNAVPVVIMRQGGLINLAV  212 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~-~~g~~v~l~V~R~g~~~~l~l  212 (230)
                      .+++|..|.++|||++|||++||+|++|||.+  +.++.++..++.. .+|+++.++|.|+|+.+++++
T Consensus        27 ~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~--v~~~~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v   93 (94)
T d1ky9a1          27 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKP--ISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNL   93 (94)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSB--CCSSHHHHHHTTSSBTTCCCEEEEESSSCEEECCC
T ss_pred             CCcEEEECCCChhHHHhCCCcccEEEEECCEE--eCCHHHHHHHHHhCCCCCEEEEEEEECCEEEEEEE
Confidence            36889999999999999999999999999999  9999999999876 468999999999999887764

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=5.1e-11  Score=86.03  Aligned_cols=68  Identities=13%  Similarity=0.123  Sum_probs=58.8

Q ss_pred             CceEEEEecCC--------ChhhhcCC-CCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC-EEEEEEEEe
Q 026990          145 PFAVIDEITDA--------SPAAEDGL-QLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG-GLINLAVTP  214 (230)
Q Consensus       145 p~~~V~~V~~~--------SPA~~AGL-~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g-~~~~l~l~p  214 (230)
                      ...+|..|.++        |||++||| ++||+|++|||++  +.++.++..+++...|+.|.|+|.|.| ..+++.++.
T Consensus        12 ~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~--v~~~~~~~~~l~g~~G~~V~L~i~R~g~~~r~~~V~~   89 (91)
T d1k32a1          12 DHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGET--VGAGSNIYRVLSEKAGTSARIRLSGKGGDKRDLMIDI   89 (91)
T ss_dssp             TEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEE--CBTTBCHHHHHHTTTTSEEEEEEECSSSCEEEEEEEC
T ss_pred             CeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEe--ecCcceeEEEEecCCCCEEEEEEEeCCCCEEEEEEEc
Confidence            35678888877        99999999 8999999999999  888999999999999999999999965 456666653

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.2e-10  Score=78.25  Aligned_cols=59  Identities=20%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .+++|..|.++|||+++||++||+|++|||.+....+.+++..+++...+..+.++|.+
T Consensus        25 ~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~~   83 (85)
T d1w9ea1          25 NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRD   83 (85)
T ss_dssp             TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEeC
Confidence            46789999999999999999999999999999323367899999988888889988864

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.1e-09  Score=79.41  Aligned_cols=59  Identities=24%  Similarity=0.371  Sum_probs=49.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ++++|..|.++|||+++||++||+|++|||....-.+..++...++. .+..+.|+|.|+
T Consensus        39 ~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~   97 (97)
T d1x5qa1          39 EGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVWRE   97 (97)
T ss_dssp             CSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEEEC
T ss_pred             CCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhC-CCCEEEEEEEEC
Confidence            56899999999999999999999999999999323345777777765 567999999985

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.1e-09  Score=74.83  Aligned_cols=56  Identities=23%  Similarity=0.274  Sum_probs=47.1

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++|..|.++|||++|||++||+|++|||.++...+..++...++. .+.++.++|.|
T Consensus        20 ~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~-~~~~v~L~v~R   75 (77)
T d2f5ya1          20 VRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWR   75 (77)
T ss_dssp             CEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEE
T ss_pred             EEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEE
Confidence            679999999999999999999999999999223345778788875 45689999987

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.3e-09  Score=77.36  Aligned_cols=59  Identities=19%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      ++|..|.++|||+++||++||+|++|||....-.+..++..+++.. +..+.++|.|.++
T Consensus        27 v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~-~~~v~L~V~R~~r   85 (85)
T d1rgwa_          27 LTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA-SYNLSLTLQKSKR   85 (85)
T ss_dssp             CBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTC-SSCEEEEEESCCC
T ss_pred             EEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEECCC
Confidence            6899999999999999999999999999993334678888888764 5689999999763

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=2.9e-09  Score=77.91  Aligned_cols=56  Identities=16%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCH--HHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLL--ERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~--~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +..+|..|.++|||++|||++||+|++|||.+  +.++  .++...++.. +..+.++|.+
T Consensus        43 ~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~--v~~~~h~evv~~ik~~-~~~v~L~V~~  100 (104)
T d1q3oa_          43 ALQYLESVDEGGVAWRAGLRMGDFLIEVNGQN--VVKVGHRQVVNMIRQG-GNTLMVKVVM  100 (104)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEE--CTTCCHHHHHHHHHHT-TTEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCCCEEEEEcCeE--cCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            35689999999999999999999999999999  6554  7888888764 6789998876

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=5.4e-09  Score=74.93  Aligned_cols=59  Identities=24%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ++.+|..|.++|||+++||++||+|++|||..+.-.+..++..+++. .+..+.++|.|+
T Consensus        32 ~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~-~~~~v~L~v~R~   90 (91)
T d1m5za_          32 KGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAE-SGNKLDLVISRN   90 (91)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-STTEEEEEEEEC
T ss_pred             CCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHC-CCCEEEEEEEEC
Confidence            46789999999999999999999999999999334567788888875 467899999885

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=4.5e-09  Score=75.42  Aligned_cols=60  Identities=23%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ++++|..|.++|||+++| |++||+|++|||......+.+++..+|+.. +..+.++|.|.|
T Consensus        31 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~-~~~v~L~v~R~g   91 (92)
T d1t2ma1          31 LGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRT-SSVVTLEVAKQG   91 (92)
T ss_dssp             CEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSC-CSEEEEEEEECC
T ss_pred             CCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            457899999999999999 999999999999993234678888888764 568999999976

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.8e-09  Score=74.42  Aligned_cols=60  Identities=25%  Similarity=0.370  Sum_probs=51.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||....-.+.+++..+++.. +..+.++|.|.|
T Consensus        31 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~-~~~v~L~v~Rpg   91 (92)
T d2fe5a1          31 NSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT-SDMVYLKVAKPG   91 (92)
T ss_dssp             CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcC-CCEEEEEEECCC
Confidence            457899999999999999 999999999999993234678888888764 568999999876

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=5.5e-09  Score=74.94  Aligned_cols=59  Identities=25%  Similarity=0.405  Sum_probs=50.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +.++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+.. +..+.|+|.|.
T Consensus        31 ~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~-~~~v~L~v~R~   90 (93)
T d1rgra_          31 PSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLYVMRR   90 (93)
T ss_dssp             CCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHT-TTEEEEEEECS
T ss_pred             CCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeC
Confidence            567899999999999999 999999999999993234678888888764 56899999885

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.83  E-value=8e-09  Score=74.87  Aligned_cols=60  Identities=20%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+.. +..+.++|.|+.
T Consensus        37 ~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~lk~~-~~~v~L~v~R~~   97 (99)
T d1ozia_          37 GGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNT-GQVVHLLLEKGQ   97 (99)
T ss_dssp             CCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHHHHHS-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHHHHCC-CCeEEEEEEeCC
Confidence            457899999999999999 999999999999992223678888888874 578999998864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.82  E-value=7.7e-09  Score=74.30  Aligned_cols=58  Identities=19%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +.++|..|.|+|||+++| |++||+|++|||......+.+++..+++.. +..+.++|.|
T Consensus        35 ~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~-~~~v~L~V~R   93 (94)
T d1ihja_          35 TGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA-DFKIELEIQT   93 (94)
T ss_dssp             EEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEe
Confidence            457899999999999999 999999999999993334688898888865 4679999987

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.3e-09  Score=74.78  Aligned_cols=59  Identities=25%  Similarity=0.397  Sum_probs=47.7

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      .+.++|..|.++|||+++| |++||+|++|||......+.+++..+++.. +..+.++|+|
T Consensus        35 ~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~~-~~~v~L~V~r   94 (96)
T d2fcfa1          35 MRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQS   94 (96)
T ss_dssp             ---EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEEC
T ss_pred             CCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence            3568899999999999999 999999999999993334678888888754 5679998876

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.5e-08  Score=72.62  Aligned_cols=59  Identities=20%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ..++|..|.+||||+++||++||+|++|||..+.-.+.+++..+++.. +..+.++|.+.
T Consensus        27 ~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~-~~~v~L~v~~~   85 (91)
T d1g9oa_          27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAA-LNAVRLLVVDP   85 (91)
T ss_dssp             SSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-SSEEEEEEECC
T ss_pred             CCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEECC
Confidence            357899999999999999999999999999993234567888888764 56788888763

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=7.1e-09  Score=74.74  Aligned_cols=58  Identities=16%  Similarity=0.274  Sum_probs=48.7

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ++|..|.|+|||+++||++||+|++|||+++.-.+..++..+++. .+..+.|+|.|..
T Consensus        32 i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~~   89 (94)
T d1vb7a_          32 IIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQ-SASPLRLQLDRSS   89 (94)
T ss_dssp             EECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSSEEEEEECCC
T ss_pred             EEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            689999999999999999999999999999333456778888876 4578999999864

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.5e-08  Score=73.52  Aligned_cols=59  Identities=24%  Similarity=0.328  Sum_probs=50.3

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +++|..|.|+|||+++| |++||+|++|||....-.+..++..+++... ..+.|+|.|+.
T Consensus        39 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~-~~v~L~V~r~~   98 (99)
T d1p1da2          39 PLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCE-DLVKLKIRKDE   98 (99)
T ss_dssp             CCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCT-TCEEEEEECCC
T ss_pred             CEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCC-CeEEEEEEeCC
Confidence            57899999999999999 9999999999999922347889999998764 46999998863

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.8e-08  Score=72.37  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=49.5

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      .+++|..|.++|||+++| |++||+|++|||....-.+.+++..+++... ..+.++|.|.
T Consensus        33 ~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~-~~v~L~V~R~   92 (94)
T d1wf8a1          33 LGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGRE   92 (94)
T ss_dssp             EEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHCC-SEEEEEEEEE
T ss_pred             CCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEeC
Confidence            347899999999999999 9999999999999933346788888887654 5799999874

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.3e-08  Score=71.45  Aligned_cols=57  Identities=18%  Similarity=0.221  Sum_probs=48.7

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +.+|..|.|+|||+++| |++||.|++|||.+..-.+.+++..+++.. +..+.++|+|
T Consensus        31 ~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~-~~~v~l~v~~   88 (90)
T d1qava_          31 PILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKT-GKEVVLEVKY   88 (90)
T ss_dssp             EEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEEE
T ss_pred             CEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence            47899999999999999 999999999999993334678888888875 4579999876

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=2.4e-08  Score=73.70  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=46.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ++++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+...+....+.+.|..
T Consensus        26 ~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~~l~~~~~   87 (112)
T d1qaua_          26 PPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGP   87 (112)
T ss_dssp             SCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEECC
T ss_pred             CCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            468899999999999999 9999999999999933346788889998765433323334443

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.1e-08  Score=73.46  Aligned_cols=57  Identities=23%  Similarity=0.193  Sum_probs=47.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +++|..|.++|||+++||++||+|++|||+.+...+.+++..+|+..  ..+.++|+|.
T Consensus        42 gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~--~~v~l~V~~~   98 (104)
T d1wi2a_          42 GIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA--REISMRVRFF   98 (104)
T ss_dssp             CCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHS--SSEEEEEECC
T ss_pred             CEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcC--CeEEEEEEEC
Confidence            47899999999999999999999999999993334678888888764  3578888763

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=9.9e-09  Score=77.96  Aligned_cols=61  Identities=23%  Similarity=0.322  Sum_probs=52.8

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~g  205 (230)
                      ++++|..|.++|||+++| |++||+|++|||+.+...+.+++..+|+.. .|..|.|+|.|+.
T Consensus        49 ~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v~L~v~R~~  111 (126)
T d1wifa_          49 PYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAYRGF  111 (126)
T ss_dssp             TEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEESSS
T ss_pred             CcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEEEEEEEeCC
Confidence            568899999999999999 999999999999993334678999999874 5789999999974

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=8.4e-09  Score=76.60  Aligned_cols=57  Identities=12%  Similarity=0.139  Sum_probs=48.2

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++|..|.++|||+++||++||+|++|||+.+...+.+++..+|+...+..+.|+|.+
T Consensus        38 v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~~   94 (111)
T d1vaea_          38 VQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS   94 (111)
T ss_dssp             CEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred             EEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEEEEEEC
Confidence            679999999999999999999999999999222356899999988777788887764

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.6e-08  Score=69.97  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=46.1

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+|..|.++|||+++||++||+|++|||++....+.+++..+++.. +..++++|.
T Consensus        25 g~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~-~~~v~l~v~   79 (82)
T d1r6ja_          25 GKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTS-GTVVTITIM   79 (82)
T ss_dssp             TEEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHS-CSEEEEEEE
T ss_pred             EEEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcC-CCEEEEEEE
Confidence            3689999999999999999999999999993334578888888864 567888775

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2.6e-08  Score=71.95  Aligned_cols=59  Identities=19%  Similarity=0.285  Sum_probs=49.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC---CCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN---QGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~---~g~~v~l~V~R  203 (230)
                      +.++|..|.++|||+++| |++||+|++|||+...-.+.+++..+|+..   .+.++.+.+.|
T Consensus        34 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~~~vel~~~R   96 (96)
T d1wi4a1          34 PLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR   96 (96)
T ss_dssp             SSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred             CCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCCeEEEEEEC
Confidence            457899999999999999 999999999999993334688888888864   45678888765

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.7e-08  Score=72.96  Aligned_cols=60  Identities=18%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      ..++|..|.++|||+++| |++||+|++|||+...-.+.+++..+|+.. +..+.++|.|..
T Consensus        38 ~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~R~~   98 (105)
T d1whaa_          38 AGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLEREA   98 (105)
T ss_dssp             CSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEECC
T ss_pred             CCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHcC-CCeEEEEEEECC
Confidence            347899999999999999 999999999999993344678888888764 467999999864

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=4.3e-08  Score=71.04  Aligned_cols=58  Identities=17%  Similarity=0.306  Sum_probs=48.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++++|..|.|+|||+++| |++||+|++|||......+.+++..+|+.. +..+.++|..
T Consensus        38 ~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~l~~~-~~~v~l~v~p   96 (98)
T d1rzxa_          38 PGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMMVAN-SSNLIITVKP   96 (98)
T ss_dssp             EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-CTEEEEEEEC
T ss_pred             CCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHHHHcC-CCeEEEEEEe
Confidence            467899999999999999 999999999999993334678999988865 4578887764

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1e-08  Score=76.68  Aligned_cols=63  Identities=17%  Similarity=0.204  Sum_probs=51.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGGLI  208 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~~~  208 (230)
                      +.++|..|.++|||+++||++||+|++|||+.+...+..++..+|+. .+..+.|+|.|.....
T Consensus        42 ~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~p~~~  104 (117)
T d1uita_          42 GGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQ-QCDTITILAQYNPHVH  104 (117)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTS-CCSEEEEEECCCSCCC
T ss_pred             CCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHC-CCCeEEEEEEECCcce
Confidence            46789999999999999999999999999999333467888887765 4678999888765443

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=4.9e-08  Score=70.26  Aligned_cols=59  Identities=20%  Similarity=0.311  Sum_probs=50.1

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+.. +..+.++|.|..
T Consensus        29 ~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~l~v~r~~   88 (95)
T d1n7ea_          29 PIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA-GETVTLKIKKQT   88 (95)
T ss_dssp             CCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence            47899999999999999 999999999999993334678888888764 568999998864

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.4e-08  Score=71.50  Aligned_cols=59  Identities=19%  Similarity=0.364  Sum_probs=48.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +.++|..|.++|||+++| |++||+|++|||+...-.+..++..+|+.. +..+.++|.|.
T Consensus        41 ~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~lk~~-~~~v~l~v~r~  100 (107)
T d1uhpa_          41 EGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRR  100 (107)
T ss_dssp             CCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEEC
Confidence            457899999999999999 999999999999993234578888888764 45788888874

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=4.7e-08  Score=71.36  Aligned_cols=59  Identities=25%  Similarity=0.324  Sum_probs=50.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      ++++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+.. +..+.++|.|.
T Consensus        33 ~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~-~~~v~L~v~~~   92 (102)
T d1tp5a1          33 EGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA-GQTVTIIAQYK   92 (102)
T ss_dssp             CCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTS-CSEEEEEEEEC
T ss_pred             CCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence            467899999999999999 999999999999994345678999998764 56888888774

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-08  Score=74.93  Aligned_cols=59  Identities=25%  Similarity=0.297  Sum_probs=51.1

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.++|||+++| |++||+|++|||+.  +.++.+...++....+..+.+.|.|..
T Consensus        48 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~--v~~~~~~~~~l~~~~~~~v~l~v~r~~  107 (124)
T d1wh1a_          48 IGIYISEIDPNSIAAKDGRIREGDRIIQINGIE--VQNREEAVALLTSEENKNFSLLIARPE  107 (124)
T ss_dssp             CCEEEEEECSSSHHHHTCCCCTTCEEEEESSCB--CCSHHHHHHHHTCSSCCSCCEEEEECS
T ss_pred             CCEEEEEECCCChhhhhcccCCCCEEEEECCEE--CCCHHHHHHHHhhCCCCcEEEEEEeCC
Confidence            457899999999999988 99999999999999  889998888877666677888888743

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.2e-08  Score=68.36  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             eEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          147 AVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       147 ~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+|..|.|+|||+++||++||+|++|||.+....+.+++..+++... ..+.++|.
T Consensus        22 g~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~l~vi   76 (79)
T d1y7na1          22 GIICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKTM   76 (79)
T ss_dssp             TEEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCC-EEEEEEEE
T ss_pred             CEEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCC-CEEEEEEE
Confidence            47999999999999999999999999999933346788989888653 46777664

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.7e-08  Score=72.08  Aligned_cols=60  Identities=27%  Similarity=0.340  Sum_probs=50.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +.++|..|.++|||+++| |++||+|++|||....-.+..++..+|+.. +..+.++|.|..
T Consensus        36 ~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~-~~~v~l~v~r~~   96 (110)
T d1um1a_          36 PGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHG-GKKMRFLVAKSD   96 (110)
T ss_dssp             SSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTC-CSEEEEEEECCC
T ss_pred             CCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            457899999999999999 999999999999993234678888888765 567899888753

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.4e-08  Score=68.06  Aligned_cols=58  Identities=21%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVI  201 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~-g~~v~l~V  201 (230)
                      .|.++|..|.|+|||+++| |++||+|++|||....-.+.+++..+++... ...+.++|
T Consensus        25 ~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v~L~V   84 (85)
T d1x45a1          25 LPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNI   84 (85)
T ss_dssp             SCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEEEEEE
T ss_pred             CCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEE
Confidence            3568999999999999999 9999999999999943456789999998743 44566655

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.5e-08  Score=72.70  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=49.2

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+... ..+.|+|.|.
T Consensus        50 gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~i~~~~-~~v~l~v~r~  108 (117)
T d1ujda_          50 GAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQS-GEAEICVRLD  108 (117)
T ss_dssp             EEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSCCS-SCEEEEEESS
T ss_pred             CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCC-CeEEEEEEEC
Confidence            47899999999999999 9999999999999933346888888887654 4689999875

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1e-07  Score=71.82  Aligned_cols=60  Identities=22%  Similarity=0.327  Sum_probs=51.3

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~  204 (230)
                      ..++|..|.+++||+++| |++||+|++|||..+.-.+..++..+|+.. .+..+.|+|.|.
T Consensus        44 ~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~v~L~v~R~  105 (123)
T d1ueqa_          44 EFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG  105 (123)
T ss_dssp             CCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred             CCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEcC
Confidence            347899999999999999 999999999999993334678999999875 478899999985

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.4e-08  Score=71.33  Aligned_cols=59  Identities=22%  Similarity=0.213  Sum_probs=49.7

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R  203 (230)
                      ++++|..|.++|||+++| |++||+|++|||....-.+.+++..+++.. .+..+.+.|.|
T Consensus        47 ~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l~v~R  107 (108)
T d2cssa1          47 LGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSR  107 (108)
T ss_dssp             EEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEEEEEE
T ss_pred             cCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEeC
Confidence            367899999999999998 999999999999993334788898988764 45678888877

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.8e-08  Score=73.32  Aligned_cols=59  Identities=19%  Similarity=0.201  Sum_probs=48.6

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      +++|..|.+++||+++||++||+|++|||+.+.-.+.+++.++|+..  ..+.++|.+.+.
T Consensus        47 gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~--~~v~l~v~~~~~  105 (128)
T d1uf1a_          47 GIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS--RHLILTVKDVGR  105 (128)
T ss_dssp             CCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC--SEEEEEEECCSC
T ss_pred             CEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC--CcEEEEEEECCc
Confidence            46899999999999999999999999999993234568888888653  468888887654

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.58  E-value=9.1e-08  Score=68.44  Aligned_cols=60  Identities=15%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC--CCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN--QGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~--~g~~v~l~V~R~  204 (230)
                      +..+|..|.|+|||++.| |++||+|++|||.+..-.+.+++.++++..  ....+.++|.|.
T Consensus        29 ~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~~v~L~V~R~   91 (92)
T d2f0aa1          29 GGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPGPIVLTVAKL   91 (92)
T ss_dssp             CCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSSCEEEEEECC
T ss_pred             CCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEeC
Confidence            357899999999999999 999999999999993334677888887642  234688888873

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=5.7e-08  Score=70.92  Aligned_cols=59  Identities=15%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~  204 (230)
                      +++|..|.++|||+++| |++||+|++|||+.+.-.+.+++..+|+.. .+..+.++|.|.
T Consensus        35 ~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~v~l~v~r~   95 (103)
T d1uepa_          35 PILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK   95 (103)
T ss_dssp             CCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEeC
Confidence            46899999999999999 999999999999993334678888888754 345788888874

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.4e-08  Score=68.67  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=47.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      +..+|..|.++|||+++| |++||.|++|||......+.+++..+++... ..++++|..
T Consensus        25 ~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~-~~v~L~i~p   83 (88)
T d1kwaa_          25 NHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMR-GSITFKIVP   83 (88)
T ss_dssp             GGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCC-EEEEEEEEC
T ss_pred             CCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCC-CcEEEEEEe
Confidence            357899999999999999 9999999999999932347888889998754 467777653

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=5.9e-08  Score=70.91  Aligned_cols=59  Identities=25%  Similarity=0.291  Sum_probs=48.9

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+++|..|.++|||+ +||++||+|++|||+...-.+..++..+++.. +..+.++|.|.+
T Consensus        39 ~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~-~~~v~l~V~R~~   97 (104)
T d2csja1          39 TSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS-GKIAAIVVKRPR   97 (104)
T ss_dssp             CBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS-CSEEEEEEEEEE
T ss_pred             CCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCC
Confidence            457899999999997 78999999999999992233678888899875 568999998853

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=4.2e-08  Score=71.78  Aligned_cols=60  Identities=22%  Similarity=0.129  Sum_probs=49.4

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.+++||+++||++||+|++|||+.+.-.+..++..+++. .+..+.|+|.|.+.
T Consensus        30 ~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~-~~~~v~l~V~R~~~   89 (103)
T d1v5la_          30 PLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKA-ASYQLCLKIDRAET   89 (103)
T ss_dssp             EEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTT-CCSEEECEECCCTT
T ss_pred             CEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCc
Confidence            3778999999999999999999999999999333456677778765 45789999998653

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=9.4e-08  Score=70.74  Aligned_cols=59  Identities=24%  Similarity=0.257  Sum_probs=48.9

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .++|..|.++|||+++| |++||+|++|||+.+.-.+.+++..+|+.. +..+.|+|.|..
T Consensus        44 ~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~~~-~~~v~l~V~r~~  103 (114)
T d1uewa_          44 PHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA-GLSVTLRIIPQE  103 (114)
T ss_dssp             SCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHHT-TTEEEEEECCCS
T ss_pred             CEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHHcC-CCeEEEEEEeCC
Confidence            47899999999999998 999999999999993234568888988764 457899888754

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=8.8e-08  Score=69.97  Aligned_cols=60  Identities=15%  Similarity=0.205  Sum_probs=50.1

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECCE
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQGG  206 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g~  206 (230)
                      .++|..|.+++||+++||++||+|++|||++..-.+.+++..+|+. .+..+.|+|.|...
T Consensus        30 ~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~-~~~~v~L~v~R~~~   89 (103)
T d1wf7a_          30 PLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASA   89 (103)
T ss_dssp             EEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSC
T ss_pred             CEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCC
Confidence            3678999999999999999999999999999333467788888876 46789999998654

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.1e-07  Score=67.91  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +.++|..|.|+|||+++ |++||+|++|||....-.+..++..+++.. +..+.+.|.|.
T Consensus        43 ~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~~-~~~v~L~V~R~  100 (103)
T d2h3la1          43 DGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKTF-QNTVELIIVRE  100 (103)
T ss_dssp             CSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHHC-CSEEEEEEEEE
T ss_pred             CCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEEE
Confidence            46789999999999987 999999999999993234667888888875 45899999884

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.4e-08  Score=73.40  Aligned_cols=59  Identities=19%  Similarity=0.195  Sum_probs=50.3

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~  204 (230)
                      +++|..|.+++||+++| |++||+|++|||....-.+.+++..+|+...+..+.++|.|.
T Consensus        58 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~~~v~l~v~r~  117 (130)
T d1i16a_          58 PLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRK  117 (130)
T ss_dssp             CCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEE
T ss_pred             CEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCCCeEEEEEEcC
Confidence            46899999999999999 999999999999993335688898999876666889988874

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.1e-07  Score=65.92  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=46.8

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .++|..|.++|||+++| |++||+|++|||.+..-.+.+++..++++. +..+.++|.
T Consensus        31 ~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~-~~~v~L~Vl   87 (88)
T d2fnea1          31 PIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVL   87 (88)
T ss_dssp             EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CSSEEEEEE
T ss_pred             CEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEE
Confidence            46899999999999998 999999999999993334678888888875 456888764

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.8e-08  Score=73.56  Aligned_cols=60  Identities=17%  Similarity=0.178  Sum_probs=49.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +.++|..|.++|||+++| |++||+|++|||+...-.+.+++..+|+. .+..+.|+|.|..
T Consensus        44 ~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~lk~-~~~~v~L~V~r~~  104 (111)
T d1ujua_          44 EGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTVLVCDGF  104 (111)
T ss_dssp             CCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEECCCCCC
T ss_pred             CCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence            457899999999999999 99999999999999323456888888875 4568888887753

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.3e-07  Score=70.43  Aligned_cols=61  Identities=21%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      .+.++|..|.+++||+++| |++||+|++|||......+++++..+|+. .+..+.|+|.|..
T Consensus        41 ~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~-~~~~v~l~v~~~~  102 (117)
T d1v62a_          41 KSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLAS-ISEKVRLEILPVP  102 (117)
T ss_dssp             SCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHS-CSSEEEEEECCBT
T ss_pred             CCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHc-CCCcEEEEEEECC
Confidence            4678999999999999998 99999999999999334578899998876 4567888887644

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=6.8e-08  Score=70.34  Aligned_cols=58  Identities=16%  Similarity=0.237  Sum_probs=46.3

Q ss_pred             ceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +++|..|.+++||+++||++||+|++|||+.+.-.+..++..+|+...  .+.++|.|.+
T Consensus        36 ~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~--~~~l~V~~~~   93 (101)
T d1ueza_          36 GIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSK--KLVLSVYSAG   93 (101)
T ss_dssp             CEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSS--SCCEEECCCC
T ss_pred             CEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCC--CEEEEEEECC
Confidence            478999999999999999999999999999922235678888887542  4667777755

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.5e-07  Score=68.94  Aligned_cols=59  Identities=17%  Similarity=0.233  Sum_probs=46.2

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ..++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+...+....+.+.|
T Consensus        35 ~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~~l~v~~r   94 (107)
T d1x6da1          35 KVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTR   94 (107)
T ss_dssp             SSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEE
T ss_pred             CCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCEEEEEEEC
Confidence            467999999999999998 99999999999999333467899899987654433333334

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.2e-07  Score=68.99  Aligned_cols=57  Identities=21%  Similarity=0.323  Sum_probs=45.4

Q ss_pred             CceEEEEecCCChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMR  203 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R  203 (230)
                      ++++|..|.++|||+++||++||.|++|||+...-.+..++..+|+...  .+.++|.+
T Consensus        34 ~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~--~~~l~v~~   90 (101)
T d1x5na1          34 PGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSR--SLTISIVA   90 (101)
T ss_dssp             CSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCS--SEEEEECS
T ss_pred             CCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCC--CEEEEEEE
Confidence            4688999999999999999999999999999932335677888887653  35565554

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2.7e-07  Score=66.94  Aligned_cols=57  Identities=21%  Similarity=0.349  Sum_probs=46.9

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEE
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIM  202 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~  202 (230)
                      .+++|..|.++|||+++| |++||+|++|||....-.+.+++..+|+...+ ++.++|.
T Consensus        41 ~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~-~v~L~v~   98 (100)
T d1va8a1          41 DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHG-TLTFVLI   98 (100)
T ss_dssp             SSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCE-EEEEEEE
T ss_pred             CCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCC-eEEEEEE
Confidence            357899999999999999 99999999999999333478899899987653 5777653

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.3e-07  Score=69.05  Aligned_cols=59  Identities=19%  Similarity=0.324  Sum_probs=49.6

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEEECC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQGNAVPVVIMRQG  205 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~g~~v~l~V~R~g  205 (230)
                      +++|..|.+++||+++| |++||.|++|||....-.+..++..+|+.. +..+.++|.|..
T Consensus        37 ~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~-~~~v~l~v~R~~   96 (103)
T d1wfva_          37 DLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSG-GRRVRLLLKRGT   96 (103)
T ss_dssp             EEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHH-CSEECEEEECTT
T ss_pred             CEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcC-CCEEEEEEEECC
Confidence            47899999999999999 999999999999993334678888888764 568999998853

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.6e-07  Score=66.85  Aligned_cols=59  Identities=12%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             ceEEEEecCCChhhhc--CCCCCCEEEEECCeeCCCCCHHHHHHHHhh---CCCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAED--GLQLGDQVLKFGTVEAGDNLLERLAAEGRK---NQGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~A--GL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~---~~g~~v~l~V~R~  204 (230)
                      .++|..|.++|||+++  ||++||+|++|||....-.+..++..+|+.   .....+.++|.|+
T Consensus        35 ~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~~~~v~L~vrp~   98 (106)
T d2cs5a1          35 PVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVRPN   98 (106)
T ss_dssp             EEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEECC
T ss_pred             CEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence            3789999999999987  899999999999999333467888888875   2334677777654

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.6e-07  Score=66.88  Aligned_cols=58  Identities=26%  Similarity=0.294  Sum_probs=47.6

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R  203 (230)
                      .++|..+.++|||+++| |++||+|++|||+.....+.+++..++++. ....+.|.+..
T Consensus        39 ~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~~~~~~l~l~v~~   98 (99)
T d1x5ra1          39 PPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAHKVVLEVEF   98 (99)
T ss_dssp             CCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             CEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEEEEEc
Confidence            47899999999999999 999999999999994345688999999853 45567776654

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=3.6e-07  Score=68.29  Aligned_cols=60  Identities=18%  Similarity=0.263  Sum_probs=49.4

Q ss_pred             CceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhh---CCCCeEEEEEEEC
Q 026990          145 PFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRK---NQGNAVPVVIMRQ  204 (230)
Q Consensus       145 p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~---~~g~~v~l~V~R~  204 (230)
                      ..++|..|.++|||++.| |++||+|++|||....-.+..++..+|+.   ..+..|.++|.|.
T Consensus        43 ~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~~V~L~v~r~  106 (118)
T d1v6ba_          43 GKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred             CCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCCEEEEEEEeC
Confidence            357899999999999999 99999999999999323467788888874   3467889988874

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=8.5e-07  Score=66.52  Aligned_cols=58  Identities=28%  Similarity=0.343  Sum_probs=45.7

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhCC-CCeEEEEEEE
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKNQ-GNAVPVVIMR  203 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~~-g~~v~l~V~R  203 (230)
                      .++|..|.|++||+++| |++||+|++|||+.....+++++.++|+... ...+.|.+.|
T Consensus        46 ~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~~~~~~l~l~~~~  105 (122)
T d1v5qa_          46 PPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEF  105 (122)
T ss_dssp             CCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcCCCceEEEEEEec
Confidence            36899999999999998 8999999999999933346889999998643 3345554443

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.5e-07  Score=66.08  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             CCceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC----CCCeEEEEEE
Q 026990          144 RPFAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN----QGNAVPVVIM  202 (230)
Q Consensus       144 ~p~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~----~g~~v~l~V~  202 (230)
                      .++++|..|.|++||+++| |++||+|++|||....-.+.+++..+|+..    ....+.+.|.
T Consensus        31 ~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~~~~~l~v~   94 (103)
T d1ufxa_          31 QPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT   94 (103)
T ss_dssp             CSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred             CCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCccceEEEEEe
Confidence            4567899999999999999 999999999999993334678888888753    1234555554

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=4.4e-07  Score=68.62  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=48.0

Q ss_pred             ceEEEEecCCChhhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC------CCCeEEEEEEEC
Q 026990          146 FAVIDEITDASPAAEDG-LQLGDQVLKFGTVEAGDNLLERLAAEGRKN------QGNAVPVVIMRQ  204 (230)
Q Consensus       146 ~~~V~~V~~~SPA~~AG-L~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~------~g~~v~l~V~R~  204 (230)
                      .++|..|.+++||+++| |++||+|++|||....-.+..++..+|+..      ...+|.++|.|.
T Consensus        56 ~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~~~~~~~V~L~V~R~  121 (127)
T d1wg6a_          56 GIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRR  121 (127)
T ss_dssp             EEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             CEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhcccccCCCCCEEEEEEeeC
Confidence            46799999999999999 999999999999993334677877777643      245789998885

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=2.5e-05  Score=55.64  Aligned_cols=50  Identities=14%  Similarity=0.156  Sum_probs=41.0

Q ss_pred             CChhhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhC-CCCeEEEEEEEC
Q 026990          155 ASPAAEDGLQLGDQVLKFGTVEAGDNLLERLAAEGRKN-QGNAVPVVIMRQ  204 (230)
Q Consensus       155 ~SPA~~AGL~~GD~Iv~Ing~~~~v~~~~dl~~~l~~~-~g~~v~l~V~R~  204 (230)
                      .+|+..+||++||+|++|||+.+.-.+.+++..+|+.. .|..+.++|.|.
T Consensus        40 ~~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~l~v~R~   90 (96)
T d1ujva_          40 LDIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHRG   90 (96)
T ss_dssp             SCGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEECC
T ss_pred             cCcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEEC
Confidence            35666789999999999999993334678999999875 578999999885