Citrus Sinensis ID: 026993
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STF9 | 257 | Pentatricopeptide repeat- | no | no | 0.742 | 0.661 | 0.298 | 4e-10 | |
| Q1PFH7 | 196 | Pentatricopeptide repeat- | no | no | 0.567 | 0.663 | 0.264 | 2e-05 |
| >sp|Q9STF9|PP266_ARATH Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 95/181 (52%), Gaps = 11/181 (6%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + + + RL+K D+LA + EL RQ E
Sbjct: 63 RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLS 155
A+A+ +F IQ+ E+ Q D+ + DLI +LAK+ E L ++++ + D + +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + G + +Y M +S +E +VL KGL L N+V+++
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPDPP----EELPFRVLLKGL--LPHPLLRNKVKKD 236
Query: 216 F 216
F
Sbjct: 237 F 237
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PFH7|PPR89_ARATH Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana GN=At1g62350 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 6/136 (4%)
Query: 50 LSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGECAVAVHVFST 107
+S E + A + LKR Q+ + + +SRL+K DL++ L E RQ + + + ++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 108 IQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL--EEIDGGDGRGLSRVVRAVVEA 164
++RE + + D+ D++ LA+N E ++ +L EE+ D +VR ++
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEV-LFDQHTFGDLVRGFLDN 119
Query: 165 GSKESTVRIYGLMKRS 180
+R+YG M+ S
Sbjct: 120 ELPLEAMRLYGEMRES 135
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| 359482912 | 230 | PREDICTED: pentatricopeptide repeat-cont | 0.956 | 0.952 | 0.512 | 4e-52 | |
| 449448168 | 230 | PREDICTED: pentatricopeptide repeat-cont | 0.917 | 0.913 | 0.493 | 8e-50 | |
| 297815036 | 220 | hypothetical protein ARALYDRAFT_905030 [ | 0.829 | 0.863 | 0.536 | 3e-48 | |
| 15232255 | 222 | uncharacterized protein [Arabidopsis tha | 0.917 | 0.945 | 0.511 | 9e-48 | |
| 356528924 | 238 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.886 | 0.517 | 3e-47 | |
| 356523014 | 240 | PREDICTED: uncharacterized protein LOC10 | 0.912 | 0.870 | 0.513 | 1e-45 | |
| 357513379 | 239 | hypothetical protein MTR_8g013670 [Medic | 0.934 | 0.895 | 0.453 | 7e-43 | |
| 224074009 | 190 | predicted protein [Populus trichocarpa] | 0.790 | 0.952 | 0.540 | 2e-41 | |
| 388505356 | 263 | unknown [Medicago truncatula] | 0.868 | 0.756 | 0.448 | 2e-38 | |
| 224286190 | 274 | unknown [Picea sitchensis] | 0.786 | 0.656 | 0.374 | 2e-20 |
| >gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Vitis vinifera] gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 161/236 (68%), Gaps = 17/236 (7%)
Query: 1 MATS-LHSNLTFLPSHHSPKHKPT-IITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA+S LHSN SP KP ITT PIRCGPR NRGPL+KGR+LS EAIQA+
Sbjct: 1 MASSALHSNFALF----SPIKKPVQTITTTSYTPIRCGPRDNRGPLMKGRVLSIEAIQAI 56
Query: 59 QFLKRAHKQNP---QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQ 114
Q LKRAH+ +P + +LSRL+K DLLA L EL+RQ +C +A+ VFS ++ E + +
Sbjct: 57 QSLKRAHRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYK 116
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTV 171
+L L DL++ LA+ G+ E+DRLI +LE +G D +G+ R+V+AV+ A ++STV
Sbjct: 117 TELSLYADLVSALARKGMKEEIDRLICDLEG-EGSVRCDDKGIVRLVKAVIAAERRDSTV 175
Query: 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLENL 227
RIYGLMKRSG G DEYVG+VLS+GLRR GE +A+EV+ EF + G+LE +
Sbjct: 176 RIYGLMKRSGCGGG---DEYVGRVLSRGLRRLGELGVADEVDLEFGRLSKGNLEKV 228
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis sativus] gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 19/229 (8%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITT--HHRLPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA+SLHS TFL S S + T+ +RCGPR NRGPLVKGR LS EAIQA+
Sbjct: 1 MASSLHS--TFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTLSIEAIQAI 58
Query: 59 QFLKRAHKQNP---QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQ 115
Q LKRA + +P Q +LSRL+K DL+A L+EL+RQ CA+A+ VF+ I+ EY+ +
Sbjct: 59 QSLKRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSEYRAE 118
Query: 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG--------RGLSRVVRAVVEAGSK 167
LGL ++ L++NG E+DRL+ +L DGGDG +GL ++++AV+ +
Sbjct: 119 -LGLYAEVAAALSRNGAAEEIDRLVSDL---DGGDGVIEWGDDDKGLIKLIKAVISGNRR 174
Query: 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
ESTVRIY +M+R G G K D+Y+ KVLSKGLRR GE ELA+E+ REF
Sbjct: 175 ESTVRIYRMMRRKGWGSMIKADDYMIKVLSKGLRRLGEIELADEINREF 223
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297815036|ref|XP_002875401.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp. lyrata] gi|297321239|gb|EFH51660.1| hypothetical protein ARALYDRAFT_905030 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/194 (53%), Positives = 138/194 (71%), Gaps = 4/194 (2%)
Query: 23 TIITTHHRL-PIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL 80
+++ RL IRCGPR NRGPL+KGRILSTEAIQ++Q LKRAH+ + T L RL
Sbjct: 18 SVVVPKRRLVSIRCGPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGSSISLTLRPLRRL 77
Query: 81 IKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLI 140
IK DL++ LREL+RQ C +AVHV ST++ EY DL L D++N L++N E+DRLI
Sbjct: 78 IKSDLVSVLRELLRQDYCTLAVHVLSTLRSEYPPLDLVLYADIVNALSRNKEFDEIDRLI 137
Query: 141 GELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGC-SWKVDEYVGKVLSK 198
GE+E ID D + L++++RAVV A +ES VR+Y L++ SG G SW+ DEYV +VLSK
Sbjct: 138 GEIEIIDQRSDDKALAKLIRAVVGAERRESVVRVYTLLRESGWGSESWEADEYVAEVLSK 197
Query: 199 GLRRFGEEELANEV 212
GL R GE++LA +V
Sbjct: 198 GLLRLGEQDLAAQV 211
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232255|ref|NP_189412.1| uncharacterized protein [Arabidopsis thaliana] gi|9294480|dbj|BAB02699.1| unnamed protein product [Arabidopsis thaliana] gi|49660179|gb|AAT68380.1| hypothetical protein At3g27750 [Arabidopsis thaliana] gi|60547779|gb|AAX23853.1| hypothetical protein At3g27750 [Arabidopsis thaliana] gi|332643839|gb|AEE77360.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 142/215 (66%), Gaps = 5/215 (2%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQF 60
MA SL T PS I+ + IRCGPR NRGPL+KGRILSTEAIQ++Q
Sbjct: 1 MALSLSQ--TRPPSLSHSHTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSIQS 58
Query: 61 LKRAHKQNPQ-NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGL 119
LKRAH+ + T L RLIK DL++ LREL+RQ C +AVHV ST++ EY DL L
Sbjct: 59 LKRAHRTGVSLSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDLVL 118
Query: 120 LTDLINTLAKNGLTGEVDRLIGELEEIDG-GDGRGLSRVVRAVVEAGSKESTVRIYGLMK 178
D++N L +N E+DRLIGE++ ID D + L++++RAVV A +ES VR+Y LM+
Sbjct: 119 YADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGAERRESVVRVYTLMR 178
Query: 179 RSGVGC-SWKVDEYVGKVLSKGLRRFGEEELANEV 212
SG G SW+ DEYV +VLSKGL R GE +LA++V
Sbjct: 179 ESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQV 213
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 149/226 (65%), Gaps = 15/226 (6%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHH--RLPIRCG-PRSNRGPLVKGRILSTEAIQA 57
MA SL N TFL K +P+ TT + +RCG PRS+R PLVKGRILS EAIQA
Sbjct: 1 MALSLFQNPTFL----KLKPQPSTATTPRWGYVRVRCGGPRSHRTPLVKGRILSIEAIQA 56
Query: 58 VQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+Q LKR H+ NP T +L+RLIK DLLA LREL+RQ C +A+ VFST++ EY
Sbjct: 57 IQTLKRLHRTNPPELTSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRVFSTLRSEYGA 116
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGEL---EEIDGGDG-RGLSRVVRAVVEAGSKEST 170
DL L ++ TLA N +T +DRLI +L EI GD +GL+ +++AVV A S+EST
Sbjct: 117 -DLSLYAEMAQTLAANDMTDHLDRLILDLASENEIKCGDDHKGLASLIKAVVAARSREST 175
Query: 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
VRIYGLM +SG G + DEYV +VL GL+ FGEE LA E++ E+
Sbjct: 176 VRIYGLMNKSGYGSVTEPDEYVVEVLVSGLKSFGEEALAKELQHEY 221
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523014|ref|XP_003530137.1| PREDICTED: uncharacterized protein LOC100799612 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 148/230 (64%), Gaps = 21/230 (9%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHH--RLPIRCG-PRSNRGPLVKGRILSTEAIQA 57
MA SL N TFL K KP I T + +RCG PRS R PL+KGRILS EAIQA
Sbjct: 1 MAFSLFQNPTFL------KLKPPTIATPRWGYVRVRCGGPRSQRSPLMKGRILSIEAIQA 54
Query: 58 VQFLKRAHKQNPQNPTY---PSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
+Q LKR H+ NP N + +L+RLIK DLLA LREL+RQ C +A+ FST++ EY
Sbjct: 55 IQTLKRLHRTNPPNLSSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRAFSTLRSEYGA 114
Query: 115 QDLGLLTDLINTLAKNG----LTGEVDRLIGELE----EIDGGDGRGLSRVVRAVVEAGS 166
DL L ++I+ LA +T VDRLI +LE EI D +GL+ +++AVV A S
Sbjct: 115 -DLSLYAEIISALAAAAAAAEMTDHVDRLILDLEAENEEIKCDDHKGLASLIKAVVAARS 173
Query: 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
+ESTVRIYGLMK+SG G + DEYV KVL GL+ FGEE LA E++ E+
Sbjct: 174 RESTVRIYGLMKKSGYGSVTEPDEYVVKVLVNGLKSFGEEALARELQDEY 223
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357513379|ref|XP_003626978.1| hypothetical protein MTR_8g013670 [Medicago truncatula] gi|355521000|gb|AET01454.1| hypothetical protein MTR_8g013670 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 146/227 (64%), Gaps = 13/227 (5%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCG-PRSNRGPLVKGRILSTEAIQAVQ 59
MA+SLH N TF+ H SP KP+ T +P+ CG PRS RGPL+KGR LS EAIQA+Q
Sbjct: 1 MASSLHQNPTFIKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQ 60
Query: 60 FLKRAHKQNPQNPTYPS-----LSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
LKR ++ NPQ T L+RLIK DL+A L+EL+RQ + +A+ VFS ++ EY
Sbjct: 61 TLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSEYGA 120
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVRAVVEAGSKES 169
DL L +++ L G+ +VDRLI E+E + GG D +G+ +++AV+ A ++
Sbjct: 121 -DLTLYAEMLKVLGNCGMYEDVDRLIEEIE-VGGGIGCDEDPKGVLSLIKAVIGAKRRDL 178
Query: 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216
VR+Y ++KRSG G + DEYV KVLS G + FG++ELA E+ ++
Sbjct: 179 LVRVYEMLKRSGWGEVVEFDEYVVKVLSNGFKGFGDDELAQEILNDY 225
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074009|ref|XP_002304213.1| predicted protein [Populus trichocarpa] gi|222841645|gb|EEE79192.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/187 (54%), Positives = 135/187 (72%), Gaps = 6/187 (3%)
Query: 32 PIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRA-HKQNPQNPTYPSLSRLIKHDLLAALR 90
PIRCGPRS RGPLV+GRILSTEAI A+Q LKRA + ++ + P+L+R+I+ DLL+ +R
Sbjct: 4 PIRCGPRSKRGPLVRGRILSTEAILAIQSLKRADNNKSESSKKLPNLARMIRSDLLSIIR 63
Query: 91 ELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEE---- 145
EL+RQ C++A+ V ST++ EY Q DL L D+I L++N ++DRLI +LEE
Sbjct: 64 ELLRQDLCSLALQVLSTLRSEYPGQIDLNLYADVIFALSRNKCFDDIDRLIDDLEEGESW 123
Query: 146 IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205
+ G RGL RVVR +VEA KESTVRI G+++RSG G +W DEYV KVL +GL+ GE
Sbjct: 124 VKWGSDRGLLRVVRGLVEARRKESTVRICGMLRRSGCGDTWTTDEYVVKVLRRGLKEMGE 183
Query: 206 EELANEV 212
E+A+EV
Sbjct: 184 IEMASEV 190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505356|gb|AFK40744.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/212 (44%), Positives = 134/212 (63%), Gaps = 13/212 (6%)
Query: 1 MATSLHSNLTFLPSHHSPKHKPTIITTHHRLPIRCG-PRSNRGPLVKGRILSTEAIQAVQ 59
MA+SLH N TF+ H SP KP+ T +P+ CG PRS RGPL+KGR LS EAIQA+Q
Sbjct: 1 MASSLHQNPTFIKPHSSPSIKPSTPTRRSYIPVHCGGPRSQRGPLIKGRFLSIEAIQAIQ 60
Query: 60 FLKRAHKQNP-----QNPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQ 114
LKR ++ NP +L+RLIK DL+A L+EL+RQ + +A+ VFS ++ EY
Sbjct: 61 TLKRINRINPQTQTETQLQTKTLTRLIKSDLVATLKELLRQEQPTLALRVFSAVRSEY-G 119
Query: 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVRAVVEAGSKES 169
DL L +++ L G+ +VDRLI E+ E+ GG D +G+ +++AV+ A ++
Sbjct: 120 ADLTLYAEMLKVLGNCGMYEDVDRLIEEI-EVGGGIGCDEDPKGVLSLIKAVIGAKRRDL 178
Query: 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201
VR+Y ++KRSG G + DEYV KVLS G +
Sbjct: 179 LVRVYEMLKRSGWGEVVEFDEYVVKVLSNGFK 210
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis] | Back alignment and taxonomy information |
|---|
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 113/195 (57%), Gaps = 15/195 (7%)
Query: 30 RLPIRCGPRS---NRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ---NPTYPSLSRLIKH 83
++P C R NRGPL +GRILSTEAIQAVQ L+RA K +PQ + RL+K
Sbjct: 64 QIPSVCNMRDKGQNRGPLWRGRILSTEAIQAVQALRRA-KGDPQRLEKAFATKIPRLLKK 122
Query: 84 DLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE 142
DLLA L+EL RQ +C +A+ VF +++E + + +L L D+I L +N EV+ ++ E
Sbjct: 123 DLLAVLQELQRQDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLE 182
Query: 143 LEEIDG--GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200
L++ +G D R + ++ A + G ++ + + LMK++ D+ VL +GL
Sbjct: 183 LQK-EGLRPDTRVCTEIIGAFIHVGMVQNAMETFELMKQTDC----HPDKSTFTVLIQGL 237
Query: 201 RRFGEEELANEVERE 215
+R GE +LA V +
Sbjct: 238 QRLGEIDLATAVREQ 252
|
Source: Picea sitchensis Species: Picea sitchensis Genus: Picea Family: Pinaceae Order: Coniferales Class: Coniferopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 229 | ||||||
| TAIR|locus:2089154 | 222 | EMB3123 "EMBRYO DEFECTIVE 3123 | 0.908 | 0.936 | 0.479 | 7.5e-41 | |
| TAIR|locus:2102832 | 257 | AT3G46870 [Arabidopsis thalian | 0.742 | 0.661 | 0.287 | 1.8e-08 | |
| TAIR|locus:2184727 | 712 | VPS9B "AT5G09320" [Arabidopsis | 0.257 | 0.082 | 0.45 | 1.7e-06 |
| TAIR|locus:2089154 EMB3123 "EMBRYO DEFECTIVE 3123" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 104/217 (47%), Positives = 134/217 (61%)
Query: 1 MATSLHSNLTFLPS-HHSPKHKPTIITTHHR-LPIRCGPRSNRGPLVKGRILSTEAIQAV 58
MA SL T PS HS H ++I + IRCGPR NRGPL+KGRILSTEAIQ++
Sbjct: 1 MALSLSQ--TRPPSLSHS--HTLSVIVPKRTFVSIRCGPRDNRGPLLKGRILSTEAIQSI 56
Query: 59 QFLKRAHKQNPQ-NPTYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQREYQQQDL 117
Q LKRAH+ + T L RLIK DL++ LREL+RQ C +AVHV ST++ EY DL
Sbjct: 57 QSLKRAHRTGVSLSLTLRPLRRLIKSDLISVLRELLRQDYCTLAVHVLSTLRTEYPPLDL 116
Query: 118 GLLTDLINTLAKNGLTGEVDXXXXXXXXXXXXXXXXX-SRVVRAVVEAGSKESTVRIYGL 176
L D++N L +N E+D ++++RAVV A +ES VR+Y L
Sbjct: 117 VLYADIVNALTRNKEFDEIDRLIGEIDGIDQRSDDKALAKLIRAVVGAERRESVVRVYTL 176
Query: 177 MKRSGVGC-SWKVDEYVGKVLSKGLRRFGEEELANEV 212
M+ SG G SW+ DEYV +VLSKGL R GE +LA++V
Sbjct: 177 MRESGWGSESWEADEYVAEVLSKGLLRLGEPDLASQV 213
|
|
| TAIR|locus:2102832 AT3G46870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 52/181 (28%), Positives = 87/181 (48%)
Query: 41 RGPLVKGR-ILSTEAIQAVQFLKRAHKQNPQNPTY--PSLSRLIKHDLLAALRELIRQGE 97
RGPL +G+ ++ EA+ + LKR + + + + + RL+K D+LA + EL RQ E
Sbjct: 63 RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122
Query: 98 CAVAVHVFSTIQR-EYQQQDLGLLTDLINTLAKNGLTGEVDXXXXXXXXXXXX-XXXXXS 155
A+A+ +F IQ+ E+ Q D+ + DLI +LAK+ E +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYT 182
Query: 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215
V+R + G + +Y M +S +E +VL KGL L N+V+++
Sbjct: 183 EVIRGFLRDGCPADAMNVYEDMLKSPD----PPEELPFRVLLKGL--LPHPLLRNKVKKD 236
Query: 216 F 216
F
Sbjct: 237 F 237
|
|
| TAIR|locus:2184727 VPS9B "AT5G09320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 79 RLIKHDLLAALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLTGEVD 137
RL+K D++A LREL+RQ EC++A+ VF I++EY + + + TD+I +A N L EV+
Sbjct: 551 RLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVN 610
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 229 212 0.00083 112 3 11 22 0.37 33
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 594 (63 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.65u 0.07s 16.72t Elapsed: 00:00:06
Total cpu time: 16.65u 0.07s 16.72t Elapsed: 00:00:06
Start: Mon May 20 19:28:13 2013 End: Mon May 20 19:28:19 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00034357001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (324 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.94 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.93 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.92 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.9 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.9 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.72 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.28 | |
| PF12854 | 34 | PPR_1: PPR repeat | 99.18 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.05 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.9 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.74 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.73 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.71 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.51 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.5 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.44 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.17 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.11 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.09 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.09 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.08 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.04 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.99 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.96 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.92 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.82 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.78 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.77 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.7 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.7 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.69 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.68 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.67 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.57 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.54 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.52 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.49 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.45 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 97.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 97.38 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.38 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 97.38 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.38 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.33 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.26 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.25 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.25 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.22 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.22 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 97.21 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 97.19 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.19 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.17 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.05 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.86 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.86 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.82 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 96.79 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.79 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.7 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.65 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 96.49 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.48 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.48 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.47 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 96.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.41 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.38 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.3 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.22 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.17 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.13 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 95.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 95.86 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 95.81 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 95.75 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.74 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.65 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 95.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 95.6 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.58 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.56 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.5 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 95.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.45 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.44 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 95.08 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 95.04 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 95.03 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.87 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.69 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.53 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.47 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 94.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 94.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 94.3 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 94.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 94.23 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.23 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 94.2 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 94.2 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 94.14 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.04 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 93.91 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 93.78 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 93.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 93.42 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 93.34 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.29 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 93.04 | |
| PLN02789 | 320 | farnesyltranstransferase | 92.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 92.81 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.77 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.61 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.45 | |
| PLN02789 | 320 | farnesyltranstransferase | 92.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.07 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 92.03 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 91.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.52 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.51 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 91.51 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 91.47 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.01 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.74 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 90.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.43 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 90.19 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 90.14 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 89.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 89.86 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 89.63 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 89.52 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 89.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 88.74 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 88.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 88.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 88.4 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 88.29 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 87.66 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 87.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 87.46 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 87.45 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 87.11 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 86.95 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 86.37 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 85.96 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 85.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 85.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 84.95 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 84.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 84.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 84.64 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 84.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 84.31 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.65 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 82.49 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 82.4 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 82.17 | |
| COG2178 | 204 | Predicted RNA-binding protein of the translin fami | 81.95 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 81.84 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 81.43 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 80.83 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 80.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.71 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 80.25 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.19 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=223.15 Aligned_cols=183 Identities=12% Similarity=0.106 Sum_probs=155.5
Q ss_pred CCCcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh------------------
Q 026993 20 HKPTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL------------------ 80 (229)
Q Consensus 20 ~~p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l------------------ 80 (229)
..|+..|++.++...|.- | ...+|..+++.|.+. +..|+ ..++.++..+
T Consensus 575 i~PD~vTynaLI~ay~k~----G-------~ldeA~elf~~M~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 575 IDPDHITVGALMKACANA----G-------QVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred CCCcHHHHHHHHHHHHHC----C-------CHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 357888899999888872 1 126788888888874 45554 2233333322
Q ss_pred --hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHH
Q 026993 81 --IKHDL---LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRG 153 (229)
Q Consensus 81 --~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~t 153 (229)
+.+|. ..++..|++.|++++|+++|+.|.+. +. ||..+||+||++|+++|++++|.++|++|.+.| .||.++
T Consensus 643 ~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~-pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdvvt 721 (1060)
T PLN03218 643 KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK-LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 23442 36799999999999999999999887 77 999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
||+||.+||+.|++++|+++|++|.+.|+. ||.+||++||++|++.|++++|.+++.+|.+.
T Consensus 722 yN~LI~gy~k~G~~eeAlelf~eM~~~Gi~----Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 722 MNALITALCEGNQLPKALEVLSEMKRLGLC----PNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999997 99999999999999999999999999999886
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=223.01 Aligned_cols=181 Identities=13% Similarity=0.203 Sum_probs=136.8
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l-------------------- 80 (229)
|+..|++.++...|... ...+|.++++.|++. +..|+ ..++..+..+
T Consensus 435 pd~~Tyn~LL~a~~k~g-----------~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G 502 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQ-----------DIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502 (1060)
T ss_pred CCHHHHHHHHHHHHhCc-----------CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 67777777777776621 225788889888884 46665 2233322222
Q ss_pred hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--CC-CCCHHH
Q 026993 81 IKHDL---LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE--ID-GGDGRG 153 (229)
Q Consensus 81 ~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~--~g-~pd~~t 153 (229)
+.+|. ..+|.+|++.|++++|+++|++|++. +. ||.++||+||++|++.|++++|.++|++|.+ .| .||.+|
T Consensus 503 v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 12332 35788888888888888888888766 67 8888888888888888888888888888875 46 788888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
||+||.+|++.|++++|.++|++|.+.|+. ||.+||++||++|++.|++++|.++|++|.+.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~----p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIK----GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 888888888888888888888888888886 88888888888888888888888888888775
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.2e-26 Score=217.99 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-chHHhhhhhhhcHHHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHh
Q 026993 52 TEAIQAVQFLKRAHKQNPQNP-TYPSLSRLIKHDLLAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAK 129 (229)
Q Consensus 52 ~ea~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~d~~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k 129 (229)
.+|..+++.|.+. +..|+.+ +. .++.+|++.|++++|.++|..|.+. +. ||..+||+||++|+|
T Consensus 307 ~eA~~lf~~M~~~-g~~pd~~t~~------------~ll~a~~~~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k 372 (697)
T PLN03081 307 EEALCLYYEMRDS-GVSIDQFTFS------------IMIRIFSRLALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHH------------HHHHHHHhccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHH
Confidence 5677777777663 4555522 22 3344444444444444444444443 34 444444444444444
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA 209 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A 209 (229)
+|++++|.++|++|.+ ||++|||+||.||++.|+.++|+++|++|.+.|+. ||.+||++||++|++.|.+++|
T Consensus 373 ~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~----Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 373 WGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA----PNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred CCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHhcCCcHHHH
Confidence 4444444444444442 34444444444444444444444444444444443 4444444444444444444444
Q ss_pred HHHHHHhh
Q 026993 210 NEVEREFC 217 (229)
Q Consensus 210 ~~v~~e~~ 217 (229)
.++|++|.
T Consensus 446 ~~~f~~m~ 453 (697)
T PLN03081 446 WEIFQSMS 453 (697)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=211.93 Aligned_cols=178 Identities=15% Similarity=0.066 Sum_probs=142.5
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQN-PTYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~-~~~~~~~~l-------------------- 80 (229)
|+..+++.++...|.- ....+|..+++.|.+. +..|+. .+...+...
T Consensus 187 ~~~~t~n~li~~~~~~-----------g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 187 RNLASWGTIIGGLVDA-----------GNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred CCeeeHHHHHHHHHHC-----------cCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 4566666666655551 1236899999999874 455552 232222211
Q ss_pred hhhcH---HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 81 IKHDL---LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 81 ~~~d~---~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
+.+|. .+++..|++.|++++|.++|+.|.+ +|+++||+||.+|++.|+.++|.++|++|.+.| .||.+||++
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ 330 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI 330 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 12222 4678999999999999999998865 899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+|++.|++++|.++|++|.+.|+. ||.++||+||++|++.|++++|.++|++|.+.
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~g~~----~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~ 389 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRTGFP----LDIVANTALVDLYSKWGRMEDARNVFDRMPRK 389 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCCC----CCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 999999999999999999999999987 89999999999999999999999999888753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=205.56 Aligned_cols=178 Identities=18% Similarity=0.104 Sum_probs=144.9
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCCC-chHHhhhh--------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQNP-TYPSLSRL-------------------- 80 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~~-~~~~~~~l-------------------- 80 (229)
|+..+++.++...|.. ....+|..+++.|.+. +..|+.+ +...+...
T Consensus 150 ~d~~~~n~li~~~~~~-----------g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g 217 (857)
T PLN03077 150 RDLFSWNVLVGGYAKA-----------GYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217 (857)
T ss_pred CCeeEHHHHHHHHHhC-----------CCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcC
Confidence 4555566555555541 1247899999999884 5777733 33322211
Q ss_pred hhhc---HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 81 IKHD---LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 81 ~~~d---~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
+.+| ..+++..|++.|+++.|.++|++|.+ ||+++||+||.+|++.|+.++|.++|++|.+.| .||.+|||+
T Consensus 218 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 1122 24688999999999999999999965 899999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+|++.|+.+.|.+++.+|.+.|+. ||.+|||+||++|++.|++++|.++|++|.+-
T Consensus 294 ll~a~~~~g~~~~a~~l~~~~~~~g~~----~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 294 VISACELLGDERLGREMHGYVVKTGFA----VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCc----cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 999999999999999999999999997 99999999999999999999999999998753
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=202.84 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=147.8
Q ss_pred CcccccccccceeeCCCCCCCCCcccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHhhhhhh------------------
Q 026993 22 PTIITTHHRLPIRCGPRSNRGPLVKGRILSTEAIQAVQFLKRAHKQNPQN-PTYPSLSRLIK------------------ 82 (229)
Q Consensus 22 p~~~~~~~~~~~~c~~~~~~~~~~~~r~l~~ea~~~~~~l~~~~~~~~~~-~~~~~~~~l~~------------------ 82 (229)
|+..+++.++...|.- + ...||..+++.|.. +..|+. .+...+....+
T Consensus 453 ~d~vs~~~mi~~~~~~----g-------~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 453 KDVISWTSIIAGLRLN----N-------RCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred CCeeeHHHHHHHHHHC----C-------CHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 5778888888877762 1 23689999999976 355663 23333332211
Q ss_pred --hc---HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHH
Q 026993 83 --HD---LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSR 156 (229)
Q Consensus 83 --~d---~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~ 156 (229)
.| ..++++.|+|.|++++|+++|+.| . ||+++||+||.+|++.|+.++|.++|++|.+.| .||.+||++
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc----C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 11 136789999999999999999988 3 999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMK-RSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~-~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
||.+|++.|++++|.++|++|. +.|+. ||..||++|+++|++.|++++|.+++++|.
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~----P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSIT----PNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 9999999999999999999998 67987 999999999999999999999999999985
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-17 Score=106.93 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
||+++||+||++||+.|++++|+++|++|++.|+. ||.+||++||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~----P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK----PDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888886 888888888888875
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-17 Score=104.87 Aligned_cols=49 Identities=18% Similarity=0.236 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE 163 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~ 163 (229)
||+++||+||++|++.|++++|.++|++|.++| .||.+|||+||+||||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999 9999999999999986
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-12 Score=75.47 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=12.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 148 GGDGRGLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 148 ~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
.||.+|||+||++||+.|++++|+++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 344444444444444444444444444443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-11 Score=71.20 Aligned_cols=34 Identities=24% Similarity=0.176 Sum_probs=31.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+|+. ||.+|||+||+|||+.|++++|.++|+||+
T Consensus 1 ~G~~----Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCE----PDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCC----CcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4776 999999999999999999999999999985
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=91.28 Aligned_cols=121 Identities=13% Similarity=0.017 Sum_probs=69.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.+.|++++|...|+++.+... .+...+..+...|.+.|++++|.++|+++.+.+ .....+|+.++.+|++.|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 3455666666666666544322 234455556666666666666666666665443 22234566666666666666666
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|+++.+.. ||..++..+...+.+.|++++|.++++++-+.
T Consensus 269 ~~~l~~~~~~~------p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 269 LEFLRRALEEY------PGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHhC------CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66666665542 55555566666666666666666666655444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-08 Score=85.55 Aligned_cols=95 Identities=13% Similarity=0.018 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
..+...+.+.|++++|...|+++.+....+...|..+...|++.|++++|.++|+++.+.+-. ....+++.+..+|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~l~~~~ 259 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE----YLSEVLPKLMECY 259 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh----hHHHHHHHHHHHH
Confidence 344444455555555555555554332112344555555555555555555555555543211 1123455555555
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
++.|+.++|.+.++++.+.
T Consensus 260 ~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 260 QALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-08 Score=88.69 Aligned_cols=124 Identities=14% Similarity=0.107 Sum_probs=104.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~ 163 (229)
..+|.++||-..++.|.+++++-+.. .+ .+.-+||.+|.+-.-... .++..+|.+.. .||..|||+++....+
T Consensus 211 s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~ak 285 (625)
T KOG4422|consen 211 SIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAK 285 (625)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHH
Confidence 35799999999999999999998876 66 888999999976443222 78999999988 9999999999999999
Q ss_pred cCCHHH----HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 026993 164 AGSKES----TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL-ANEVEREFCW 218 (229)
Q Consensus 164 ~g~~~~----A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~-A~~v~~e~~~ 218 (229)
.|+++. |.++..+|++-|+. |..-+|--+|+-+++.++... |--++.|.++
T Consensus 286 fg~F~~ar~aalqil~EmKeiGVe----PsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 286 FGKFEDARKAALQILGEMKEIGVE----PSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred hcchHHHHHHHHHHHHHHHHhCCC----cchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 998875 56788999999996 999999999999999998744 5555555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.1e-09 Score=61.15 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
++||+||++|++.|++++|.++|++|.+.|+. ||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~----p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIE----PDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----CCC
Confidence 47899999999999999999999999988886 873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5.8e-08 Score=87.33 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
...||.+||.|+||--..+.|.+++.+-.+.. +.+.-+||.+|.+-.-.. ..++..+|...... ||..|||
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~----Pnl~TfN 277 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT----PNLFTFN 277 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC----CchHhHH
Confidence 45789999999999999999999999987665 889999999998765433 37889999999887 9999999
Q ss_pred HHHHHHHhcCCHHHH----HHHHHHhhhc-CCCCC
Q 026993 195 VLSKGLRRFGEEELA----NEVEREFCWV-PGGSL 224 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A----~~v~~e~~~~-~~~~~ 224 (229)
+++++..+.|+++.| .+++.||+++ ..|+|
T Consensus 278 alL~c~akfg~F~~ar~aalqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcch
Confidence 999999999999886 5677799987 44443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.6e-07 Score=86.36 Aligned_cols=126 Identities=9% Similarity=-0.033 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+.+++.+.+... .+..+|..+...|.+.|++++|...|+++.+....+...|..+...|.+.|++
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 34445556666666666666544333 44556666666666666666666666666544322345566666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
++|.++|+++.+..- .+..++..+...+...|++++|.++++.+.+.
T Consensus 652 ~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 652 AKAITSLKRALELKP-----DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666654321 34555555666666666666666666555544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.4e-08 Score=59.29 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDG 151 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~ 151 (229)
++||+||++|++.|++++|.++|++|.+.| .||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 479999999999999999999999999999 9984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-08 Score=58.38 Aligned_cols=31 Identities=13% Similarity=0.374 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
+|||+||++|++.|++++|.++|++|.+.||
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4677777777777777777777777777764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-06 Score=84.50 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=77.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+..|+.+.+... .+...|..+...|.+.|+.++|...|+++.+....+..+|+.++..++..|++
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 44555666777777777766654333 34555666666666677777777776666544323456666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
++|.++++.|.+.+. .+..++..+...+.+.|++++|.+.++++-+.
T Consensus 686 ~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 686 ESAKKIAKSLQKQHP-----KAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHHHHhhCc-----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 666666666665543 45555666666666666666666666655444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.6e-08 Score=56.67 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVG 183 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~ 183 (229)
+|||++|.+|++.|+++.|.++|++|++.|+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 57888888888888888888888888888875
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.51 E-value=1e-07 Score=54.24 Aligned_cols=30 Identities=23% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
++||+||++|++.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 589999999999999999999999999875
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-05 Score=63.09 Aligned_cols=127 Identities=12% Similarity=-0.035 Sum_probs=102.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g 165 (229)
+-..+...|+++.|.+.|+...+... .+...+..+-..|...|++++|.+.|++..... .+ +...|..+-..+.+.|
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 44556788999999999988866444 456778888889999999999999999987654 23 3457777888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
++++|.+.|.+..+..- .+...+..+...+...|+.++|.+.+++..+..
T Consensus 150 ~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDP-----QRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred CHHHHHHHHHHHHHhCc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999887542 346678888999999999999999999887763
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=54.47 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG 149 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p 149 (229)
+.+||++|.+|++.|+++.|.++|++|++.| +|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998 77
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.6e-05 Score=61.53 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=103.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
+-..+...|++++|.+.|+..... .. .+...+..+-..|.+.|++++|...|++..+....+...|..+...+.+.|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 345567889999999999998754 22 345567778888999999999999999987654234668889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
++++|.+.|++..+. .. .+...+..+...+...|+.++|..+.+.+.+..
T Consensus 184 ~~~~A~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YN----QTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CHHHHHHHHHHHHHh-CC----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999876 33 566777788899999999999999988877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.3e-06 Score=70.19 Aligned_cols=123 Identities=14% Similarity=0.054 Sum_probs=84.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+.++|+..++...+... -|....+.++..+...|+.+++.+++....+....|...|..+-.+|...|+.+
T Consensus 153 a~~~~~~G~~~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 153 AEIYEQLGDPDKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 3456788999999999988865332 257788899999999999999999998887654234567889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+|+.+|++..+..- -|..+...+-+.+...|+.++|.++.++.-
T Consensus 232 ~Al~~~~~~~~~~p-----~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 232 EALEYLEKALKLNP-----DDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHHST-----T-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence 99999999887542 477888899999999999999999887653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00024 Score=67.36 Aligned_cols=125 Identities=14% Similarity=0.011 Sum_probs=94.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~ 169 (229)
.+...|++++|...|+...+... .+...|..+-..|...|+.++|...|++..+.. |+. ..+..+...+...|++++
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~ee 424 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDD 424 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHH
Confidence 35678999999999988765322 245678888888999999999999999987664 332 233445556778899999
Q ss_pred HHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.+.+..+..- |+. ..+..+-..+...|+.++|.+.++++....+.
T Consensus 425 A~~~~~~~l~~~~-----p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 425 AIRLGDELRSQHL-----QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHHHHHhcc-----ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 9999999876542 443 34566777888999999999999887666554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00034 Score=66.95 Aligned_cols=129 Identities=11% Similarity=-0.067 Sum_probs=100.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+...|++++|+..|+...+... -+..+|..+-..|...|++++|...|++..+....+...|..+-..+.+.|++
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 34445678899999999888765433 35677888888899999999999999988765423567788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|+..|++..+.. + -+...|+.+-..+...|++++|.+.|+..-+..+.
T Consensus 450 ~eA~~~~~~al~~~-P----~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 450 ASSMATFRRCKKNF-P----EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHHHhC-C----CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999887643 1 24667788888999999999999999887776543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00012 Score=49.66 Aligned_cols=95 Identities=18% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKG 199 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~ 199 (229)
|..+...+.+.|++++|...|.+..+....+...|..+-..+...|++++|.+.|.+.....- .+..++..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-----DNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----cchhHHHHHHHH
Confidence 444555666677777777777776554322335666667777777777777777777665442 344566666677
Q ss_pred HHhcCCHHHHHHHHHHhhhc
Q 026993 200 LRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~ 219 (229)
+...|+.+.|.+.+.+..+.
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 78 YYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHhHHHHHHHHHHHHcc
Confidence 77777777777777666544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0004 Score=66.48 Aligned_cols=125 Identities=8% Similarity=-0.133 Sum_probs=103.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
.+...|++++|+..|+...+. . |+ ...|..+-..|...|++++|...|++..+...-+...|..+-..|...|++++
T Consensus 340 ~~~~~g~~~eA~~~~~kal~l-~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 340 FKCLKGKHLEALADLSKSIEL-D-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 456789999999999887653 3 54 55788888999999999999999999876542356789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.|++..+..- .+...+..+-..+.+.|+.++|...+++..+..+.
T Consensus 418 A~~~~~kal~l~P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~ 465 (615)
T TIGR00990 418 AGKDYQKSIDLDP-----DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE 465 (615)
T ss_pred HHHHHHHHHHcCc-----cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999887542 35677888888999999999999999988776543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00062 Score=65.90 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=71.3
Q ss_pred HHhcCCHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 92 LIRQGECAV----AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 92 l~~~g~~~~----A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+.+.|+.++ |+..|+...+... .+...+..+-..|.+.|++++|...+++..+...-+...+..+-..|.+.|++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 444555553 5555555543222 23456666666677777777777777666544311244555666667777777
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYV-GKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~T-y~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|.++.+.. |+... +..+...+...|+.++|.+.|++.-+..+
T Consensus 335 ~eA~~~l~~al~~~------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 335 TAASDEFVQLAREK------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHHHHhC------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 77777777666542 44333 22234556677777777777776655433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00068 Score=65.62 Aligned_cols=127 Identities=14% Similarity=0.124 Sum_probs=82.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGE----VDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~----A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+.+.|++++|+..|+...+... .+...+..+-..|.+.|++++ |...|++..+...-+...+..+-..+.+.|
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 345566777777776666654322 345566666677777777775 677777766543224567777777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++++|...|++..+..- -+...+..+-..+.+.|++++|.+.++++-+..+.
T Consensus 299 ~~~eA~~~l~~al~l~P-----~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 299 QNEKAIPLLQQSLATHP-----DLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred CHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 88888887777766432 23445566777777788888888877776665443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=65.10 Aligned_cols=131 Identities=14% Similarity=0.103 Sum_probs=96.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~ 163 (229)
..+..+.+.++++.+..+++..... .. .|...|..+-..+-+.|+.++|.+.+++..+.. || ....+.++..+..
T Consensus 115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 115 SALQLYYRLGDYDEAEELLEKLEELPAAP-DSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4566677888999999988887654 34 677888888888999999999999998876653 54 6788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.|+.+++.++++...+.. + .|...+..+-.++...|+.++|...+++..+..+.+.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~----~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-P----DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--H----TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCChHHHHHHHHHHHHHC-c----CHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 999999888888877654 2 4445677888899999999999999998887666543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=6e-05 Score=69.02 Aligned_cols=115 Identities=10% Similarity=0.025 Sum_probs=93.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE---YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVR 159 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~---~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~ 159 (229)
|+-..+..+....+++++..+....+.. .. --..|..++|..|.+.|..++|..++..=...| .||.+|||.||+
T Consensus 68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~-~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd 146 (429)
T PF10037_consen 68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSY-LLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMD 146 (429)
T ss_pred HHHHHHhhcCCHhHHHHHHHHHHHHHcCccccc-ccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHH
Confidence 3334455566667788888888777654 11 223455699999999999999999999988899 999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
.+.+.|++..|.++..+|...+.. .+..|+.--+.+|.+.
T Consensus 147 ~fl~~~~~~~A~~V~~~~~lQe~~----~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 147 HFLKKGNYKSAAKVATEMMLQEEF----DNPSTQALALYSCYKY 186 (429)
T ss_pred HHhhcccHHHHHHHHHHHHHhhcc----CCchHHHHHHHHHHHh
Confidence 999999999999999998776664 6779998888888877
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00024 Score=53.32 Aligned_cols=79 Identities=11% Similarity=0.090 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCCCCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGS--------KESTVRIYGLMKRSGVGCSWKVD 189 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~--------~~~A~~~f~~M~~~g~~~~~~Pd 189 (229)
-..-|.-+...|++.....+|..++.+| .|++.+||.++.+-++... +-+.+.+|.+|...++. |+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK----P~ 103 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK----PN 103 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC----Cc
Confidence 3445556666688888888888888877 6888888888888777653 33667899999988886 99
Q ss_pred HHHHHHHHHHHHh
Q 026993 190 EYVGKVLSKGLRR 202 (229)
Q Consensus 190 ~~Ty~~Li~~~~~ 202 (229)
..||+++|..+.+
T Consensus 104 ~etYnivl~~Llk 116 (120)
T PF08579_consen 104 DETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998865
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00019 Score=59.73 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc----------------CCHHHHHH
Q 026993 115 QDLGLLTDLINTLAKN-----GLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA----------------GSKESTVR 172 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~-----g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~----------------g~~~~A~~ 172 (229)
.|-.+|..+|+.|.+. |.++-...-+..|.+-| .-|..+||.||+.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 4455555566555543 55555666666666666 66666666666655432 24478999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
++++|...|+- ||..|+..|++.|++.+..
T Consensus 125 lL~qME~~gV~----Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVM----PDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCC----CcHHHHHHHHHHhccccHH
Confidence 99999999997 9999999999999988753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00098 Score=52.00 Aligned_cols=89 Identities=11% Similarity=-0.005 Sum_probs=49.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|...|+.....-. .+...|..+-..+.+.|++++|...|+...+....|...|..+-.++.+.|+.++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~e 110 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGL 110 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655543211 2444555555566666666666666666554332244555555556666666666
Q ss_pred HHHHHHHHHH
Q 026993 170 TVRIYGLMKR 179 (229)
Q Consensus 170 A~~~f~~M~~ 179 (229)
|...|..-.+
T Consensus 111 Ai~~~~~Al~ 120 (144)
T PRK15359 111 AREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00077 Score=51.07 Aligned_cols=97 Identities=18% Similarity=0.036 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
....+...+.+.|++++|.+.|+...+.+..+...|..+-..|.+.|++++|..+|+...+.+- .+..++-.+-.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~~~~~~~la~ 93 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP-----DDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CChHHHHHHHH
Confidence 3444445555566666666666555543322445555555555566666666666655544432 33444444555
Q ss_pred HHHhcCCHHHHHHHHHHhhhcC
Q 026993 199 GLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+...|+.++|.+.+++.-+..
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHhc
Confidence 5555666666666665554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00056 Score=46.17 Aligned_cols=91 Identities=13% Similarity=0.074 Sum_probs=74.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
....+.+.|++++|..+|....+... .+...+..+-..|...|++++|.+.|+........+..+|..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 33456778999999999998876443 45567888888999999999999999998766533456888999999999999
Q ss_pred HHHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKR 179 (229)
Q Consensus 168 ~~A~~~f~~M~~ 179 (229)
++|...|.+..+
T Consensus 85 ~~a~~~~~~~~~ 96 (100)
T cd00189 85 EEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHc
Confidence 999999988764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=67.71 Aligned_cols=126 Identities=13% Similarity=0.127 Sum_probs=99.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHH----------
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVV---------- 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI---------- 158 (229)
.+.+.|++++|+..|+...+... -|...+..|-..|.+.|++++|...|++..+.. .++...|..++
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 35578999999999998876433 367789999999999999999999999987654 23333343332
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 159 --RAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 159 --~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..+.+.|++++|.+.|++..+..- .|...+..|-..+...|+.++|.+.|++.-+..+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 356789999999999999987642 45677788899999999999999999988776554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0024 Score=65.58 Aligned_cols=120 Identities=8% Similarity=0.042 Sum_probs=64.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+...|+.++|+.+++ ... .+...+..+-..|.+.|+.++|...|++..+...-|...+..+...|...|+.+
T Consensus 580 a~~l~~~G~~~eA~~~l~----~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLR----QQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHCCCHHHHHHHHH----hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 344555666666665554 111 233344555555666666666666666655443123455666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+.|+...+.. | +..++..+-..+...|+.++|.++++++...
T Consensus 655 eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 655 AARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 6666666544321 2 2233444455555666666666666655543
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00023 Score=65.24 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=92.7
Q ss_pred HHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 104 VFSTIQREYQ---QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 104 vf~~m~~~~~---~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
++..|.+.+. ....+....+++......+++++..++....... .--..|..++|+.|.+.|..++|+++...=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5556655421 1466677888888888889999999998876542 122345679999999999999999999999
Q ss_pred HHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 178 KRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 178 ~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..-|+- ||.+|||.|++.|.+.|++..|.+|.-+|+..
T Consensus 130 ~~yGiF----~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ 167 (429)
T PF10037_consen 130 LQYGIF----PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQ 167 (429)
T ss_pred hhcccC----CChhhHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 999997 99999999999999999999999999998875
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0042 Score=62.79 Aligned_cols=120 Identities=8% Similarity=-0.027 Sum_probs=76.3
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
+.|++++|+..|+...+ .. |+...|..+-..+.+.|+.++|...|.+..+...-+...++.+-..+...|+.++|.++
T Consensus 588 ~~Gr~~eAl~~~~~AL~-l~-P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLN-IA-PSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHH-hC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34666666666655543 33 66666777777777777777777777776654322345666666677777777777777
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
|++-.+..- -|...+..+-..+...|+.++|...+++.-+..
T Consensus 666 l~~AL~l~P-----~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 666 LERAHKGLP-----DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 776665431 244555667777777777777777777665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=48.52 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-Q-QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG-DGRGLSRVVRAVVE 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~-pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d~~tyn~lI~~~~~ 163 (229)
...+.+.|++++|.+.|..+.+... . .....+..+-..+.+.|++++|...|++..... .+ ....+..+-..+.+
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555543311 0 011233344455555555555555555544332 11 12344444455555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 026993 164 AGSKESTVRIYGLMKRS 180 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~ 180 (229)
.|+.++|.+.|++..+.
T Consensus 89 ~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKR 105 (119)
T ss_pred hCChHHHHHHHHHHHHH
Confidence 55555555555555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0016 Score=59.28 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=98.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
++++-+...++++.|+.+|+++.+. . |++ +..|...|...++-.+|.++.++..+...-|....+.-...|.+.++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-~-pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-D-PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-C-CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 3566666778999999999999763 2 554 44577888888999999999998876543367778888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEY-VGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
.+.|+++.+++.+.. |+.+ +|..|..+|.+.|+++.|.-.++-+=
T Consensus 250 ~~lAL~iAk~av~ls------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999998753 7666 99999999999999999998876443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0041 Score=54.25 Aligned_cols=119 Identities=13% Similarity=-0.083 Sum_probs=89.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~~ 169 (229)
.+.+.|+.++|...|+...+... .+...|+.+=..|.+.|++++|...|+...+.. | +..+|..+-..+...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 36678999999998888765332 356789999999999999999999999887654 4 46788888888999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|.+.|+.-.+.. |+..............++.++|.+.+.+..
T Consensus 151 A~~~~~~al~~~------P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 151 AQDDLLAFYQDD------PNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHhC------CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 999998887653 544322222222345678899999886543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.70 E-value=9.3e-05 Score=64.67 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+..+.+.++++.|.+.++.|++ .. .|... ..+.|+.+--...+++|..+|++|.++-.++..+.|.+-.++...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~-~~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ-ID-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC-CS-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh-cC-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 35566677777777777777754 22 34322 233333333334677777777777654345667777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhcCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE-ELANEVEREFCWVPG 221 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~-~~A~~v~~e~~~~~~ 221 (229)
|++++|.+++.+-.+..- -|.-|..-+|-.....|+. +.+.+++.+++...|
T Consensus 215 ~~~~eAe~~L~~al~~~~-----~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDP-----NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp T-HHHHHHHHHHHCCC-C-----CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred CCHHHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 777777777776544332 1333444455555666666 556677777766533
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0036 Score=63.27 Aligned_cols=130 Identities=11% Similarity=-0.084 Sum_probs=102.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.....+.+.|+.++|...|+...+... .+...+..+-..+-+.|++++|...|++-.+. .|+...|..+-..+.+.|+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI-APSANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHCCC
Confidence 445567889999999999988865422 23334444444555669999999999998754 4788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.++|.+.|.+..+..- -+...++.+-..+...|+.++|.++++..-+..|..
T Consensus 625 ~deA~~~l~~AL~l~P-----d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 625 VPAAVSDLRAALELEP-----NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999987642 355677788889999999999999999887776543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0049 Score=50.78 Aligned_cols=90 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL-AKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~-~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..+...|+.+.|...|+...+-.. -|...|..+-.++ ...|+ .++|.+++++..+.+.-|...+..+=..+.+.|+
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~ 159 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD 159 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence 344455555555555554433211 2334444444432 34444 3555555555554431134455555555555555
Q ss_pred HHHHHHHHHHHHHc
Q 026993 167 KESTVRIYGLMKRS 180 (229)
Q Consensus 167 ~~~A~~~f~~M~~~ 180 (229)
+++|...|+++.+.
T Consensus 160 ~~~Ai~~~~~aL~l 173 (198)
T PRK10370 160 YAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555555555543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0021 Score=60.97 Aligned_cols=119 Identities=8% Similarity=-0.191 Sum_probs=90.9
Q ss_pred CCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
+++++|...++...+ .. | |...|..+=..+...|++++|...|++..+.+.-+...|..+-..|...|+.++|.+.|
T Consensus 318 ~~~~~A~~~~~~Al~-ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATE-LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 457888888877655 33 4 56678888788899999999999999987665224567888889999999999999999
Q ss_pred HHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 175 GLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++..+.. |+. ..+..+...+...|+.++|.+.++++.+..++
T Consensus 396 ~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p 438 (553)
T PRK12370 396 NECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ 438 (553)
T ss_pred HHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc
Confidence 9998764 442 22333444567789999999999988765433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0043 Score=46.86 Aligned_cols=104 Identities=15% Similarity=0.068 Sum_probs=82.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.....+.+.|+.++|...|+....... .+...|..+-..|.+.|++++|...|+.....+..+..+|..+=..|...|+
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCC
Confidence 344557788999999999988866443 4677888899999999999999999998876653456677777788999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
.++|...|++..+.. |+...+.-+.
T Consensus 101 ~~~A~~~~~~al~~~------p~~~~~~~~~ 125 (135)
T TIGR02552 101 PESALKALDLAIEIC------GENPEYSELK 125 (135)
T ss_pred HHHHHHHHHHHHHhc------cccchHHHHH
Confidence 999999998887753 6666654443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=57.61 Aligned_cols=119 Identities=17% Similarity=0.137 Sum_probs=87.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH---HHHHHHHHHHHcCCH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR---GLSRVVRAVVEAGSK 167 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~---tyn~lI~~~~~~g~~ 167 (229)
.+...|++++|+++.+.- -+.......|..|.+.+|++.|.+.|..|++.+ .|.. ...+.|+.+.....+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID-EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHhCchhH
Confidence 345679999999776543 355666788999999999999999999998764 2322 233334433334479
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+|+-+|++|... +. ++..+.+.+.-+....|++++|++++++.-+..+
T Consensus 184 ~~A~y~f~El~~~-~~----~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FG----STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp CHHHHHHHHHHCC-S------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHHHHHHHHHHhc-cC----CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9999999998764 55 8889999999999999999999999998765543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=49.43 Aligned_cols=77 Identities=6% Similarity=0.190 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-c-CCCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-Y-QQQDLGLLTDLINTLAKNG--------LTGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~-~~pd~~ty~~LI~~~~k~g--------~~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
.-+..+...+++.....+|+.+++. + . |.+.+||.++.+.++.. ++-+...++++|..++ +|+.-|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~l-Psv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITL-PSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667779999999999999877 6 6 99999999999998865 3556788899999999 99999999
Q ss_pred HHHHHHHHc
Q 026993 156 RVVRAVVEA 164 (229)
Q Consensus 156 ~lI~~~~~~ 164 (229)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999998764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0029 Score=49.32 Aligned_cols=102 Identities=11% Similarity=-0.073 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
|+. +..+-..+.+.|++++|...|+........+...|..+-..+.+.|++++|...|+...+..- .|..++.
T Consensus 24 p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-----~~~~a~~ 96 (144)
T PRK15359 24 PET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-----SHPEPVY 96 (144)
T ss_pred HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHH
Confidence 553 555677889999999999999998876544788999999999999999999999999997653 4778888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-+-.++...|+.++|.+.++..-+..+..
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 89999999999999999999887776554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0068 Score=44.20 Aligned_cols=103 Identities=12% Similarity=-0.002 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEID--GG-DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGK 194 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~ 194 (229)
+|-.+...+.+.|++++|.+.|.++.+.. .+ ....+..+-..+.+.|+++.|.+.|++.....-. .| ....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---SPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---CCcccHHHH
Confidence 46677778899999999999999997653 11 1346777999999999999999999998864211 02 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.+-..+.+.|+.++|.+.++++.+..|.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 788889999999999999999988766553
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0088 Score=58.97 Aligned_cols=126 Identities=13% Similarity=-0.019 Sum_probs=95.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+-..+.+.|++++|..+|+...+.-. .+...+..+...+.+.|++++|...+++..+....+.. |..+-..+...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 4455667888999999999988765432 34666778888899999999999999998765422344 888888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+.++|...|++..+..- -+...+..+...+...|..+.|.+.++....
T Consensus 131 ~~~~Al~~l~~al~~~P-----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 131 RHWDELRAMTQALPRAP-----QTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 99999999999987642 2444556677788888998889888876554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.016 Score=48.18 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCH-HHHH-
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQDL-GLLTDLINTLAKN--------GLTGEVDRLIGELEEIDGGDG-RGLS- 155 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~-~ty~~LI~~~~k~--------g~~~~A~~lf~~M~~~g~pd~-~tyn- 155 (229)
+-..+.+.|++++|+..|+.+.+... .++. ..+..+-..+.+. |+.++|.+.|+...... |+. ..+.
T Consensus 76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a 154 (235)
T TIGR03302 76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDA 154 (235)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHH
Confidence 44567789999999999999977532 1222 1333333444443 78999999999987654 332 1221
Q ss_pred ----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 156 ----------------RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 156 ----------------~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+-..|.+.|+.++|...|.+.....-. .| ....+..+...+.+.|+.++|.++++.+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD---TPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445678899999999999998765210 02 346778899999999999999999999887
Q ss_pred cCC
Q 026993 219 VPG 221 (229)
Q Consensus 219 ~~~ 221 (229)
.++
T Consensus 232 ~~~ 234 (235)
T TIGR03302 232 NYP 234 (235)
T ss_pred hCC
Confidence 664
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0022 Score=55.72 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
+..++.+.|.+..+.|.++|...++. +. .+++...++|..+ -.++.+.|.++|+...+.-..|..-|..-|+-+.+
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~-~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCT-YHVYVAYALMEYY-CNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 35566677777788999999988754 34 6677777776443 24566679999998765434467788888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEY----VGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~----Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.|+.+.|..+|++-... + |... .|...|+-=.+.|+++...+|.+.+.++.+.
T Consensus 83 ~~d~~~aR~lfer~i~~-l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISS-L-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCT-S-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHh-c-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999999999888765 4 4444 8888888889999999999999888887554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0082 Score=59.15 Aligned_cols=128 Identities=9% Similarity=-0.035 Sum_probs=99.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
+......|+.++|++++......-. .+...+..+-..+.+.|++++|..+|++..+....+...+..+...+...|+.+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~-~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQ-LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 3445678999999988888754222 355568888899999999999999999876553224566778888899999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+|...+++..+..- .+.. +..+-..+...|+.++|.+.+++.-+..|..
T Consensus 101 eA~~~l~~~l~~~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 101 EALVKAKQLVSGAP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999887632 2344 8888888899999999999998888776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.011 Score=53.77 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g 165 (229)
.+...+.+.|+.+.|.++.....+ .. +|. --.++.+....++.+++.+..+...++. || ...+-++=..+.+.|
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~-~~-~~~--~l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~ 342 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLK-RQ-YDE--RLVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHG 342 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-CCH--HHHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence 457778889999999999877755 23 444 2234555566799999999999988764 44 556888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++++|.+.|+...+. . ||..+|..|-..+.+.|+.++|.+++++--.
T Consensus 343 ~~~~A~~~le~al~~--~----P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 343 EWQEASLAFRAALKQ--R----PDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHhc--C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999875 3 9999999999999999999999999996533
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.017 Score=44.71 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=87.1
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC-CCCH--HHHHHHHHHHHHcCCH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID-GGDG--RGLSRVVRAVVEAGSK 167 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~--~tyn~lI~~~~~~g~~ 167 (229)
..++...+...++.+.+.+. .+.+..-+ +-..+...|++++|...|+...... .|+. ...-.|-..+...|++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 57888888888999887654 33222222 3367888999999999999998876 4432 3555577888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
++|+..++...... .....+..+-+.+.+.|+.++|++.|+.
T Consensus 102 d~Al~~L~~~~~~~------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEA------FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcc------hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999997644333 3445677788999999999999999875
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.013 Score=57.10 Aligned_cols=127 Identities=14% Similarity=0.030 Sum_probs=103.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g 165 (229)
+-+...+.|..++|..+++...+ +. || ......+...+.+.+++++|....+...... || ....+.+=.++.+.|
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~-~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQ-RF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHh-hC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhc
Confidence 44556678999999999988865 45 65 4567778899999999999999999988764 44 566777777888999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.++|++....+ || .-++..+-..+-+.|+.++|...|+..-....++
T Consensus 169 ~~~~A~~~y~~~~~~~------p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~ 221 (694)
T PRK15179 169 QSEQADACFERLSRQH------PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG 221 (694)
T ss_pred chHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence 9999999999999843 55 7888889999999999999999999876654443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00026 Score=68.91 Aligned_cols=94 Identities=16% Similarity=0.034 Sum_probs=79.4
Q ss_pred HHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 026993 107 TIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGC 184 (229)
Q Consensus 107 ~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~ 184 (229)
.|+.. +. ||.+||..+|.-||..|+++.|- +|.-|+-+. .-+...|+.++.+...+++.+.|. .
T Consensus 15 ~~e~~gi~-PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e- 80 (1088)
T KOG4318|consen 15 LHEISGIL-PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E- 80 (1088)
T ss_pred HHHHhcCC-CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C-
Confidence 34333 66 99999999999999999999998 999998877 567899999999999999888875 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 185 SWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 185 ~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|-.-||+.|.++|..-|++..-+.+-++|.
T Consensus 81 ---p~aDtyt~Ll~ayr~hGDli~fe~veqdLe 110 (1088)
T KOG4318|consen 81 ---PLADTYTNLLKAYRIHGDLILFEVVEQDLE 110 (1088)
T ss_pred ---CchhHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 888899999999999999887555555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0018 Score=63.27 Aligned_cols=90 Identities=11% Similarity=0.029 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
||..+|.++++.-.-+|+++.|..+..+|+++| .-+.+-|..||-| .+...-+..+...|.+.|+. ||..||
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~----p~seT~ 274 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQ----PGSETQ 274 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCC----CCcchh
Confidence 899999999999999999999999999999999 6677777777766 88888888899999999997 999999
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 026993 194 KVLSKGLRRFGEEELANE 211 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~ 211 (229)
..-+-.+.++|....+.+
T Consensus 275 adyvip~l~N~~t~~~~e 292 (1088)
T KOG4318|consen 275 ADYVIPQLSNGQTKYGEE 292 (1088)
T ss_pred HHHHHhhhcchhhhhccc
Confidence 988877777666555443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=48.68 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 131 GLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 131 g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
|++++|..+|+++.+.. .++...|-.+-..|.+.|++++|.++++. .+.+. .+.-..-.+-.+|.+.|+.++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-----~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-----SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-----CHHHHHHHHHHHHHHTT-HHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-----CCHHHHHHHHHHHHHhCCHHH
Confidence 45555555555554433 11222333355555555666666555555 21111 111122233455555566666
Q ss_pred HHHHHHH
Q 026993 209 ANEVERE 215 (229)
Q Consensus 209 A~~v~~e 215 (229)
|.+++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 5555543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.016 Score=48.15 Aligned_cols=130 Identities=11% Similarity=0.024 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~ 161 (229)
.....+.+.|+++.|...|+.+.+... .|. ...+..+-..|-+.|++++|...|+++.+.. .|.. .+|..+-..+
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 445567789999999999999876532 121 1356777889999999999999999998764 2332 2444444444
Q ss_pred HHc--------CCHHHHHHHHHHHHHcCCCCCCCCCHH-HHH-----------------HHHHHHHhcCCHHHHHHHHHH
Q 026993 162 VEA--------GSKESTVRIYGLMKRSGVGCSWKVDEY-VGK-----------------VLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 162 ~~~--------g~~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty~-----------------~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+. |+.++|.+.|++..+.. |+.. .+. .+-..+.+.|+.++|...+++
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRY------PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHC------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 443 78899999999998753 4432 221 344567788999999999999
Q ss_pred hhhcCCC
Q 026993 216 FCWVPGG 222 (229)
Q Consensus 216 ~~~~~~~ 222 (229)
..+..+.
T Consensus 192 al~~~p~ 198 (235)
T TIGR03302 192 VVENYPD 198 (235)
T ss_pred HHHHCCC
Confidence 8776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0081 Score=56.38 Aligned_cols=128 Identities=21% Similarity=0.178 Sum_probs=99.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC--CC-
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE----YQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI-----DG--GD- 150 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-----g~--pd- 150 (229)
.+...++..+++++|..++..-.+. .+ +|. -+|+.|=..|-+.|+++||+++|.+...+ |+ +.
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g-~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPG-EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 3455577789999999998876544 33 332 57999999999999999999999875432 11 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH----HHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGL----MKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~----M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
...+|-|=..|.+.++.++|.++|.+ |+..|.. .||+ +||.-|...|-+.|++|.|.++.+..-+
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~---~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD---HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC---CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 36788888899999999999999976 5555543 3654 7899999999999999999999875543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.011 Score=53.13 Aligned_cols=105 Identities=14% Similarity=0.028 Sum_probs=84.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+++.|+..|.+..+... -+...|..+-.+|.+.|++++|...+++..+....+...|..+-.+|.+.|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3456788999999999999876533 466788888899999999999999999987765335678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+|.+.|++..+.. |+......++.-|
T Consensus 88 eA~~~~~~al~l~------P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLA------PGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 9999999998754 6655555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=43.27 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=37.5
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV 158 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI 158 (229)
.+.|++++|+++|+.+.+... -|...+-.+..+|.+.|++++|..+++.+... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCHHHHHHHH
Confidence 355666777777766655433 35555666666777777777777777666544 24544444443
|
... |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0084 Score=56.84 Aligned_cols=168 Identities=15% Similarity=0.102 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CCchHHhhhh-----------------hhhc------HHHHHHHHHhcCCHHHHHHHH
Q 026993 50 LSTEAIQAVQFLKRAHKQNPQ-NPTYPSLSRL-----------------IKHD------LLAALRELIRQGECAVAVHVF 105 (229)
Q Consensus 50 l~~ea~~~~~~l~~~~~~~~~-~~~~~~~~~l-----------------~~~d------~~~vl~~l~~~g~~~~A~~vf 105 (229)
+-+|=.++|..++|+...+|. ...++.+..- ++.| |..+=..+.|+++.+.|.-.|
T Consensus 433 LQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHH
Confidence 556777899999999888886 3333322211 1111 223334467899999999888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 026993 106 STIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCS 185 (229)
Q Consensus 106 ~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~ 185 (229)
+...+ +-..|.+.-..+-..+-+.|+.|+|..+|++-..-..-|..+-=-.+.-+...++.++|+..+++.++.-
T Consensus 513 qkA~~-INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v---- 587 (638)
T KOG1126|consen 513 QKAVE-INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV---- 587 (638)
T ss_pred Hhhhc-CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC----
Confidence 66654 3313677777777889999999999999998765541233333334556678899999999999999753
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCC
Q 026993 186 WKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV-PGGSL 224 (229)
Q Consensus 186 ~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~-~~~~~ 224 (229)
| +..+|-.|-+.|-+.|+.+.|..-|-.+.+. +++.-
T Consensus 588 --P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 588 --PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred --cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 5 4577888999999999999999999988886 55443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0042 Score=53.27 Aligned_cols=122 Identities=12% Similarity=0.082 Sum_probs=91.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH----Hc
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV----EA 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~----~~ 164 (229)
...++..|++++|++..+.. -+.-.+..=+..+.|..+++-|.+....|.+-. +..|.|-|-.++. ..
T Consensus 115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGG 186 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccc
Confidence 44577889999999877663 334444455566778889999999999998753 4556665544444 45
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+...+|+-+|++|-++- . |+.-|-+-+..++...|++++|+.++++.-..-+..
T Consensus 187 ek~qdAfyifeE~s~k~-~----~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d 240 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKT-P----PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD 240 (299)
T ss_pred hhhhhHHHHHHHHhccc-C----CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC
Confidence 57899999999998643 3 899999999999999999999999999876654333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.013 Score=58.20 Aligned_cols=128 Identities=12% Similarity=-0.087 Sum_probs=87.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH-HHHH--HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGL-LTDL--INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t-y~~L--I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
.++..+...|+.++|+..++.... |+... +..+ ...|...|++++|.++|+++.+...-|...+..++..|..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~----p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQS----SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhcc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence 445666677888888888777652 43222 3333 3466677889999999988877651134555677888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
.|+.++|++.+++.... . |+...|-.++..+...++..+|.+.++++-+..|...
T Consensus 149 ~~q~~eAl~~l~~l~~~--d----p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~ 203 (822)
T PRK14574 149 AGRGGVVLKQATELAER--D----PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE 203 (822)
T ss_pred cCCHHHHHHHHHHhccc--C----cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH
Confidence 88889998888888764 2 7777775555555445666568888888877766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.022 Score=51.91 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~ 161 (229)
.....+.+.|+.+.|.++.+...+.. ||... .....-.....++.+.+.+.++.-.+.. .|+....-++=..|
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 44567888999999999998887653 33221 1222223334577888888888766543 33324556788889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
.+.|++++|.+.|+.-...... ||..++..+-..+.+.|+.++|.+++++-
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~----p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQ----LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999953332334 99999999999999999999999999975
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.022 Score=48.55 Aligned_cols=121 Identities=18% Similarity=0.101 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
..+...+.|++.+|...|.+....-. +|-..||.+=-+|-+.|++++|+.-|.+-.+--.-+...+|.|--.|.-.|+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~ 184 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL 184 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence 45667788999999999988765334 78889999999999999999999998876554311345677777778888999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
++|..++..-...+- -|..+-.-|--.....|++++|+.+..
T Consensus 185 ~~A~~lll~a~l~~~-----ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 185 EDAETLLLPAYLSPA-----ADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHHHHHHHhCCC-----CchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999998888775 477777778888889999999988764
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0042 Score=51.84 Aligned_cols=86 Identities=13% Similarity=0.149 Sum_probs=66.0
Q ss_pred HhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcC----------------CHHHHHHHHHHhhhCC-CCCHHHH
Q 026993 93 IRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNG----------------LTGEVDRLIGELEEID-GGDGRGL 154 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g----------------~~~~A~~lf~~M~~~g-~pd~~ty 154 (229)
.|.|+.+-.......|.+- .. .|+.+|+.||+.+=|.. +-+=|.+|+++|+..| .||..|+
T Consensus 63 ~RRGHVeFI~aAL~~M~efgv~-kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~ 141 (228)
T PF06239_consen 63 RRRGHVEFIYAALKKMDEFGVE-KDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETE 141 (228)
T ss_pred CCcChHHHHHHHHHHHHHcCCc-ccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3567888777777778654 45 89999999999877643 3566899999999999 9999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHH
Q 026993 155 SRVVRAVVEAGSK-ESTVRIYGLMKR 179 (229)
Q Consensus 155 n~lI~~~~~~g~~-~~A~~~f~~M~~ 179 (229)
..|++.|.+.+.. .+..++.--|.+
T Consensus 142 ~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 142 QMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHH
Confidence 9999999988843 344444444433
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.029 Score=48.89 Aligned_cols=121 Identities=12% Similarity=-0.004 Sum_probs=95.0
Q ss_pred cCCHHHHHHHHHHHHHH--cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 95 QGECAVAVHVFSTIQRE--YQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~--~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.++.+.++.-+..+... .. |+ ...|..+=..|.+.|+.++|...|++..+...-+...|+.+=..|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~-~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT-DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCC-cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35566677777776643 23 32 345666667889999999999999998766433578999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+.|+...+.. | +..+|.-+-..+...|+.++|.+.++..-+..|.
T Consensus 118 ~~~~~~Al~l~------P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~ 164 (296)
T PRK11189 118 YEAFDSVLELD------PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN 164 (296)
T ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999998754 4 4677788888889999999999999987776544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.014 Score=48.07 Aligned_cols=125 Identities=9% Similarity=-0.052 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcCC--HHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAGS--KESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g~--~~~A~ 171 (229)
.++.++++..+....+.-. .|...|..|-..|...|++++|...|+.-.+...-|...|..+-.+ |...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4555666666655544333 4777899999999999999999999998876552256677777766 467787 59999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
+++++-.+..- -|..++..+-..+.+.|++++|...++.+-+..+++.+
T Consensus 131 ~~l~~al~~dP-----~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 131 EMIDKALALDA-----NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhCC-----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999998764 36678888889999999999999999998887666543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.019 Score=52.31 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=79.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH----HHHHHHHHcCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS----RVVRAVVEAGS 166 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn----~lI~~~~~~g~ 166 (229)
.+...|+++.|+..++.+.+... -|...+..+...|.+.|+.++|.+++..+.+.+.++...+. ..-.++...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777766433 34556777777777777777777777777766522222221 11112233333
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+++.+.+..+.+.--. ....|...+..+...+...|+.++|.+++++.-+..+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~-~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPR-HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HhcCHHHHHHHHHHCCH-HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 34444455555443210 000166777888889999999999999999887765443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0025 Score=44.69 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
+|+++.|+.+|+.+.+... .+|...+-.+-.+|.+.|++++|..+++.. +.+..+....-.+-.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-KLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-THHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6889999999999977622 134444555889999999999999999882 22211223333446678899999999999
Q ss_pred HHH
Q 026993 174 YGL 176 (229)
Q Consensus 174 f~~ 176 (229)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.026 Score=51.29 Aligned_cols=118 Identities=8% Similarity=0.015 Sum_probs=85.9
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH--HHHHHHHHcCCHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDL-INTLAKNGLTGEVDRLIGELEEIDGGDGRGLS--RVVRAVVEAGSKESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~L-I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn--~lI~~~~~~g~~~~A~ 171 (229)
.|+++.|.+....-.+ .. ++...|-.+ -..-.+.|+++.|.+.|.++.+.. ||...+- ..-.-+...|+.++|.
T Consensus 97 eGd~~~A~k~l~~~~~-~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD-HA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA-DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 6899998876655432 22 223344333 334488999999999999987653 4443222 3356788999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+.++++.+..- -+...+..+...+.+.|++++|.+++..+.+..
T Consensus 174 ~~l~~~~~~~P-----~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 174 HGVDKLLEVAP-----RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred HHHHHHHhcCC-----CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 99999987653 356778889999999999999999999888763
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0037 Score=41.57 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
+.+.|++++|.++|+++.+...-|...+-.+...|.+.|++++|.++++...... ||...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~------~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD------PDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG------TTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------cCHHHHHHHH
Confidence 3567899999999999876542256677789999999999999999998888753 7766665554
|
... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.029 Score=55.74 Aligned_cols=120 Identities=18% Similarity=0.078 Sum_probs=91.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+...|+++.|+++|+.+.+... -|...+..++..|...|+.++|.+.+...... .|+...|-.++..+-..++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER-DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc-CcchHHHHHHHHHHHhcchHH
Confidence 3456677999999999999977533 34566678889999999999999999998765 466666644444343455666
Q ss_pred HHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 169 STVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
+|++.|++|.+.. | |.-.+.-+...+.+.|-...|.++.++-
T Consensus 187 ~AL~~~ekll~~~------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 187 DALQASSEAVRLA------PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 6999999999874 5 5666688999999999888888776653
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.018 Score=51.74 Aligned_cols=93 Identities=9% Similarity=-0.075 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
..+.+.|++++|.++|++..+...-+...|..+-.+|.+.|++++|+..+++..+..- .+...|..+-..|...|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-----~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-----SLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHHHHHHHHhC
Confidence 3566789999999999998876533577888889999999999999999999987642 36678888889999999
Q ss_pred CHHHHHHHHHHhhhcCCC
Q 026993 205 EEELANEVEREFCWVPGG 222 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~ 222 (229)
++++|.+.|++..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 999999999988877554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.044 Score=50.54 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=98.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~ 169 (229)
...+.|+.+.|++.++.+.+... -|.+........+.+.++.++|.+.|+.+... .|+ ...+=.+=.+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHH
Confidence 34567899999999999876554 46677777788999999999999999998865 466 5667777889999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|..+.++-....- -|...|..|-.+|...|+..+|..-..|.-
T Consensus 393 ai~~L~~~~~~~p-----~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDP-----EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCC-----CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999998877653 478899999999999998888776665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.035 Score=48.78 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVL 196 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~L 196 (229)
....+-..+...|++++|.+.+++..+....+...+..+-..|...|++++|.+.+.+.....-. .|+. ..|-.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~---~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC---SSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC---CcchhHHHHHHH
Confidence 34455567788899999999999887765334667788888889999999999998887654211 0343 345567
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 026993 197 SKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..+...|+.++|..++++....
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc
Confidence 78888999999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.056 Score=47.52 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=86.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC-CCCH-HHHHHHHHHHHHcCC
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID-GGDG-RGLSRVVRAVVEAGS 166 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~-~tyn~lI~~~~~~g~ 166 (229)
+...|+.+.|.++++...+... .|...++. .....-..|..+.+.+.+.. ... .|+. ..+..+-..+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYP-RDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 4568999999999988866543 34445542 22222234566666666655 222 4443 445556677889999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+++|.+.|++..+..- .|...+..+-..+...|++++|...+++..+..+
T Consensus 130 ~~~A~~~~~~al~~~p-----~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 130 YDRAEEAARRALELNP-----DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHhhCC-----CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 9999999999988653 4567888899999999999999999998776543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.048 Score=43.43 Aligned_cols=100 Identities=10% Similarity=-0.040 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
...|..+-..|.+.|++++|...|++....+ .++ ...|..+-..|.+.|++++|.+.|.+..+..- -+...+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~ 109 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-----KQPSAL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHH
Confidence 4456667777788888888888888876554 322 35778888888888888888888888776431 244455
Q ss_pred HHHHHHHHhcCC--------------HHHHHHHHHHhhhcCC
Q 026993 194 KVLSKGLRRFGE--------------EELANEVEREFCWVPG 221 (229)
Q Consensus 194 ~~Li~~~~~~g~--------------~~~A~~v~~e~~~~~~ 221 (229)
..+...+...|+ +++|.+++++..+..+
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 556666666665 3555666655554433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.19 Score=45.43 Aligned_cols=68 Identities=19% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCC
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV-PGGSL 224 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~-~~~~~ 224 (229)
.-.|.+|=.-|.+.+.+.+|.+.|+.-.+. . |+..+|+.+-++|.+.|+.++|.++.+|-... ..++.
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~----~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--R----PSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--C----CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 367778888899999999999999965544 3 99999999999999999999999999986643 44433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.073 Score=45.44 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=95.2
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.-.|+-+.+..+.......+. -|...-+..+....+.|++.+|...|.+......+|..+||-+=-+|-+.|+++.|..
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ 155 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARR 155 (257)
T ss_pred HhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHH
Confidence 344666666655544433344 5666777789999999999999999999886547789999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-|.+-.+.-. -+...+|-|--.+.-.|+.+.|+.++.+...-++
T Consensus 156 ay~qAl~L~~-----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 156 AYRQALELAP-----NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHhcc-----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 9988877543 2345566677777778999999999988766544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.07 Score=45.04 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=75.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
||.+|++++|.+.|+.-... |. .-..+|..+--+-.|.|+++.|...|..-.+...-...+.-.|-.-..+.|++-.
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~-~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYG-EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCC-CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 56666666666666665544 32 1223455555555566666666666665544331123445556666666666666
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
|...++.-...|. +...+.-..|+---+.|+.+.|.+.-..+++-+|.+.+
T Consensus 192 Ar~~~~~~~~~~~-----~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 192 ARLYLERYQQRGG-----AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHhccc-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6666666655543 56666666666666677777777777777776666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.045 Score=48.35 Aligned_cols=120 Identities=20% Similarity=0.144 Sum_probs=75.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH------HHHHHHHHHHHHcCCHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG------RGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~------~tyn~lI~~~~~~g~~~ 168 (229)
.++.+.|.++|-+|.+.-. -..-+--+|=+-|-+.|.+|.|.++...+.++ ||. ..--.|=.-|-.+|.+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4567777777777765211 11223334556677777777777777776654 442 23334555667777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.|.++|....+.|. --.-.---|+.-|-...+|+.|.++-+++.+..+.
T Consensus 125 RAE~~f~~L~de~e-----fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 125 RAEDIFNQLVDEGE-----FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred HHHHHHHHHhcchh-----hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 77777777766554 23344556777777777777777777766665443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.041 Score=42.16 Aligned_cols=86 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHh--------------hhC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGEL--------------EEI-D-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M--------------~~~-g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
|..++.++|-++++.|+++....+.+.. ... . .||..+-.+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4457788888888888888887777542 111 2 68899999999999999999999999987754
Q ss_pred -cCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 180 -SGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 180 -~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-++. -+..+|..|++-.-..-+
T Consensus 81 ~Y~I~----i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIP----IPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCC----CCHHHHHHHHHHHHHhcC
Confidence 4665 568888888887765554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.1 Score=49.04 Aligned_cols=128 Identities=13% Similarity=0.006 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH----cCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE----YQQQDLGLLTDLI----NTLAKNGLTGEVDRLIGELEE-----ID--GGDG- 151 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd~~ty~~LI----~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~- 151 (229)
+-..|..+|+++.|..+|.+-.+. .. .+.-...+++ ..|...+++++|..+|+++.. .| .|.+
T Consensus 205 La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 205 LAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 445677899999999999886543 22 2333333333 478889999999999998753 24 3333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEYVG-KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~Ty-~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+++.|=..|++.|++++|...+++-.+ .|.. .|++-+. +-+..-|+..+++|+|..+++...++
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~---~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS---HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC---hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 5788888899999999988877765321 2332 2555544 66778889999999999999866554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=48.79 Aligned_cols=121 Identities=14% Similarity=0.122 Sum_probs=77.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~ 166 (229)
+-.+|...|++.+|.+-+..-..-+. .-.-.-|.|=+.|...|++++|.++|..-.+- .|+ .-.+|.|-.-|-+.|+
T Consensus 326 lanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 326 LANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhccc
Confidence 34455666888888877766544222 22345667777888888888888888765543 233 3467777777888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
+++|+..|++-.+- . |+- -.|+-+-+.|-..|+++.|.+.+...
T Consensus 404 l~~Ai~~YkealrI--~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 404 LDDAIMCYKEALRI--K----PTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred HHHHHHHHHHHHhc--C----chHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 88888888776642 2 442 35566666666666666666655443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.2 Score=42.35 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=70.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-++.++|+...|.+-++...+ .. |+ .-+|..+-..|-+.|..+.|.+-|..-.+...-|....|.-=.-+|..|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~-~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALE-HD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChH
Confidence 346667777777766655543 22 33 3456666677777777777777776544332113344555555567777777
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|...|++-...-.-. +| .-||.-+.-+..+.|+.+.|++.|+.--++
T Consensus 121 eA~q~F~~Al~~P~Y~--~~-s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 121 EAMQQFERALADPAYG--EP-SDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHHHHHHHHHhCCCCC--Cc-chhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 7777776665532110 01 234444444445667777777777654444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.3 Score=38.77 Aligned_cols=109 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-..+.+.|++++|+..|++..+. -..++ ...|..+-..|.+.|++++|...+.+..+...-+...|..+-..|...|+
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 42 GMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 34467789999999999988654 22122 46788889999999999999999998876542245677777777777776
Q ss_pred --------------HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 167 --------------KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 167 --------------~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
+++|.+++.+..+.+ |+. |-.++.-+.-.|+
T Consensus 122 ~~~a~~~~~~A~~~~~~A~~~~~~a~~~~------p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 122 KAEEAGDQDEAEALFDKAAEYWKQAIRLA------PNN--YIEAQNWLKTTGR 166 (172)
T ss_pred hHhHhhCHHHHHHHHHHHHHHHHHHHhhC------chh--HHHHHHHHHhcCc
Confidence 466777776666533 554 5555555555444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.2 Score=49.07 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=86.0
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC
Q 026993 111 EYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD 189 (229)
Q Consensus 111 ~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd 189 (229)
.|. .+.-.|--|-....+.|+.+||..+++...+. .|| .-.+-.+...+.+.+++|+|+..+++-.... ||
T Consensus 81 ~~~-~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~------p~ 152 (694)
T PRK15179 81 RYP-HTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG------SS 152 (694)
T ss_pred hcc-ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC------CC
Confidence 365 67888999999999999999999999998765 466 5688889999999999999999999998764 65
Q ss_pred HH-HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 190 EY-VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 190 ~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.. ....+-..+.+.|+.++|..+|+++-.
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 54 457778889999999999999999886
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.036 Score=42.76 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCCCCCHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMK-----RSGVGCSWKVDEYVG 193 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~-----~~g~~~~~~Pd~~Ty 193 (229)
....++..+...|+.++|.++...+.....-|...|-.+|.+|.+.|+...|.++|..+. +.|+. |+..|-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~----Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE----PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--------HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC----cCHHHH
Confidence 455667778889999999999988877654578899999999999999999999998774 35886 877664
Q ss_pred H
Q 026993 194 K 194 (229)
Q Consensus 194 ~ 194 (229)
.
T Consensus 140 ~ 140 (146)
T PF03704_consen 140 A 140 (146)
T ss_dssp H
T ss_pred H
Confidence 3
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.17 Score=40.01 Aligned_cols=93 Identities=10% Similarity=-0.091 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG--DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p--d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
...|..+...+-..|++++|...|.+..... .| ...+|..+=..|.+.|++++|.+.|+...+..- ....++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-----~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-----FLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CcHHHH
Confidence 3456677777778899999999998876443 22 235788888888899999999999988776432 234555
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHH
Q 026993 194 KVLSKGLR-------RFGEEELANEVER 214 (229)
Q Consensus 194 ~~Li~~~~-------~~g~~~~A~~v~~ 214 (229)
..+...+. +.|++++|...++
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 66666666 7777775554444
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=44.55 Aligned_cols=104 Identities=9% Similarity=0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
...|..-+.-+.+.|++++|...|+...+.- |+. -.+--+-..|...|++++|...|..+.+.--..++.||..-
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4567777777788899999999999988653 432 35556777889999999999999999864211111133322
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 193 GKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 193 y~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-+...+...|+.+.|.++++++-+..|.+
T Consensus 222 --klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 222 --KVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 24555678999999999999888766554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.65 Score=44.66 Aligned_cols=119 Identities=15% Similarity=0.122 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.+|.++.|+..+++-.+ .. |+ ...||.|-+++-..|++.||+..++.-..-. |+ ..+.|.|=+.|...|.+++|.
T Consensus 298 eqG~ldlAI~~Ykral~-~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~ 374 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALE-LQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEAT 374 (966)
T ss_pred ccccHHHHHHHHHHHHh-cC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHH
Confidence 57899999998877654 23 44 4579999999999999999999998865443 43 467888999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 172 RIYGLMKRSGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|..-.+-- |+ ...+|-|-.-|-..|++++|..-++|.-++-|
T Consensus 375 ~ly~~al~v~------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 375 RLYLKALEVF------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HHHHHHHhhC------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 9998876532 43 35678888899999999999999999888744
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.081 Score=47.03 Aligned_cols=101 Identities=7% Similarity=-0.056 Sum_probs=84.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH-HHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG-KVLSKG 199 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty-~~Li~~ 199 (229)
+-|=.+|.+.|.+.+|++-|..-.+. .|-+.||--|-..|-+-.+.+.|+.+|++-.++ .|-.+|| .-+-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchhhhhhhhHHH
Confidence 45667899999999999999875543 466778888999999999999999999887764 2888888 446677
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCCCCC
Q 026993 200 LRRFGEEELANEVEREFCWVPGGSLENLS 228 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~~~~~~~~~~ 228 (229)
+...++.++|.+++++.-+..+...|-|+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 88899999999999999998888877765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.029 Score=55.54 Aligned_cols=120 Identities=14% Similarity=0.120 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
++.+.|+++|..+.+... -|.+.-|-+=-.++.+|++++|..+|.+..+...-+..+|-.|=+.|.-.|++..|+++|+
T Consensus 626 k~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 467789999988876544 5888888888889999999999999999988652244578889999999999999999998
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.-.++-.. +-+..+...|-+++-+.|.+.+|.+.+.-....
T Consensus 705 ~~lkkf~~---~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 705 NCLKKFYK---KNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHhcc---cCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 65443223 267778888999999999999998887655554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.27 Score=43.61 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=85.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCC---CH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQ---DL-GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV-RAVV 162 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~p---d~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI-~~~~ 162 (229)
++..|....+|+.|+++=..+.+--+++ .+ ..|.-|-..+--..+++.|..++.+-.+.+ |+-+=-|+++ +-+.
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~ 225 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHH
Confidence 4555666777888877766665421101 11 123334444445677888888887765543 2322222322 3466
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..|+++.|++.++...+.... --..+-..|..+|...|+.+++...+.++.+..++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPE----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hccchHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 889999999999888876532 23356788999999999999999999988887554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.043 Score=36.11 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
.+.+.|++++|.+.|++..+.. | +...|..+=..+.+.|++++|.+.|++..+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666666666666665543 3 344555566666666666666666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.1 Score=49.80 Aligned_cols=103 Identities=12% Similarity=-0.023 Sum_probs=73.3
Q ss_pred CCHHHHHHHH---HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 115 QDLGLLTDLI---NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 115 pd~~ty~~LI---~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
.|..-||+.= ..|.|.++++.|+-.|..-.+-+.-|.+.-..+-..+-+.|+.|+|+++|++-....-. |..
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-----n~l 558 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-----NPL 558 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-----Cch
Confidence 4555555543 35778888999988888776655336677777777888899999999999887655432 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+-=--...+-..++.++|.+.++|+++..|.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~vP~ 589 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKELVPQ 589 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHhCcc
Confidence 3222455566778999999999999988654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.47 Score=36.40 Aligned_cols=107 Identities=21% Similarity=0.212 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ---QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~---~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
....|+...+...+......+. -++... ...+.....-+.++- ..+...++..+...|+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY------LDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccCHH
Confidence 3456777788877777765422 022211 344555555555553 246778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.++...+....- -|...|..+|.+|...|+..+|.++|+.+.+.
T Consensus 80 ~a~~~~~~~l~~dP-----~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 80 EALRLLQRALALDP-----YDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHST-----T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999987653 58999999999999999999999999987663
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.2 Score=49.84 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=90.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCC-CCCHHHHHHHHHHHHHcCCHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGEL-EEID-GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M-~~~g-~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
|+..|++++|+.||..+++... -+.-+|-.|=++|..+|++..|.++|+.. .+.+ .-+....+.|=.++.++|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 5678999999999999987622 12335778899999999999999999974 4444 5577888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHhhhcCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL------------------RRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~------------------~~~g~~~~A~~v~~e~~~~~~ 221 (229)
|.+....-...-.. =..+-||..+-.. ...+..++|.++|.++-....
T Consensus 735 ak~~ll~a~~~~p~----~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 735 AKEALLKARHLAPS----NTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHHHhCCc----cchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99987655443322 1234455433222 334467778888888877643
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.42 Score=44.28 Aligned_cols=119 Identities=14% Similarity=0.149 Sum_probs=90.2
Q ss_pred hcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHH-------------------------------HHHHhcCCHHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE--YQQQDLGLLTDLI-------------------------------NTLAKNGLTGEVDRLI 140 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI-------------------------------~~~~k~g~~~~A~~lf 140 (229)
.+.+++.|+.+|+++++. |+--|.-+|..++ +-|+-.++-++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 456899999999999887 5523677887776 3467777889999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------------------------------CCCCCCCC
Q 026993 141 GELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS--------------------------------GVGCSWKV 188 (229)
Q Consensus 141 ~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~--------------------------------g~~~~~~P 188 (229)
..-.+-+.-....|+-|=+-|..-.+...|++-|+.-++- -| +|
T Consensus 354 kRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~----kP 429 (559)
T KOG1155|consen 354 KRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL----KP 429 (559)
T ss_pred HHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc----CC
Confidence 8766544223567777777788777777777777665431 13 36
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 189 -DEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 189 -d~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|...|.+|-+.|.+.++.++|.+-|+..
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7899999999999999999999988754
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.6 Score=36.77 Aligned_cols=87 Identities=15% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH----
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQ--DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV---- 162 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~p--d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~---- 162 (229)
...+...|++++|+..|.........+ ...+|..+=..|.+.|+.++|...++...........+++.+-..|.
T Consensus 42 g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 42 GMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 344567899999999998886542102 23578888889999999999999999877543223456777777777
Q ss_pred ---HcCCHHHHHHHHH
Q 026993 163 ---EAGSKESTVRIYG 175 (229)
Q Consensus 163 ---~~g~~~~A~~~f~ 175 (229)
..|+++.|...|+
T Consensus 122 ~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 122 QAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHcccHHHHHHHHH
Confidence 7778775555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.32 Score=44.46 Aligned_cols=88 Identities=14% Similarity=0.086 Sum_probs=70.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~ 167 (229)
.+.+...++-.+|+++.++..++.. -|....+.-...|.+.++.+.|.++..+..+. .|+. .+|..|..+|.+.|++
T Consensus 207 A~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~ 284 (395)
T PF09295_consen 207 ARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDF 284 (395)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCH
Confidence 4444456677788888877765544 46666777778899999999999999998765 4665 5999999999999999
Q ss_pred HHHHHHHHHHH
Q 026993 168 ESTVRIYGLMK 178 (229)
Q Consensus 168 ~~A~~~f~~M~ 178 (229)
+.|+-..+.|.
T Consensus 285 e~ALlaLNs~P 295 (395)
T PF09295_consen 285 ENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCc
Confidence 99999888765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.05 Score=35.75 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=49.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-..+.+.|++++|.+.|++..+..- =+.-.+-.+-..+...|++++|..+|+++-+..|.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDP-----DNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCST-----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3568899999999999999998652 25667788889999999999999999998765543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.34 Score=42.01 Aligned_cols=100 Identities=11% Similarity=0.075 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGS 166 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~ 166 (229)
++.-.++.+.|.+||+...+.+. .|...|..=|+.+.+.|+.+.|+.||+..... .|.. ..|...|.-=.+.|+
T Consensus 45 E~~~~~d~~~A~~Ife~glk~f~-~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 45 EYYCNKDPKRARKIFERGLKKFP-SDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HHHTCS-HHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHhCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCC
Confidence 45556788889999999988887 78888999999999999999999999997654 3444 499999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
++.+..+.++|.+. + |+.-+...+++
T Consensus 123 l~~v~~v~~R~~~~-~-----~~~~~~~~f~~ 148 (280)
T PF05843_consen 123 LESVRKVEKRAEEL-F-----PEDNSLELFSD 148 (280)
T ss_dssp HHHHHHHHHHHHHH-T-----TTS-HHHHHHC
T ss_pred HHHHHHHHHHHHHH-h-----hhhhHHHHHHH
Confidence 99999999999874 2 55444444444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.35 Score=47.78 Aligned_cols=121 Identities=15% Similarity=0.145 Sum_probs=92.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~ 163 (229)
..+.++|.+.|++.+|+.+|..+... .. -+.+.|--+=.+|-..|..++|.+.++...... || ...=-+|=.-|-+
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~-~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~ 495 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGY-QNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQ 495 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccc-cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHh
Confidence 35778899999999999999999876 33 467888899999999999999999999887653 33 2333345556789
Q ss_pred cCCHHHHHHHHHHHHHcC----CCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 026993 164 AGSKESTVRIYGLMKRSG----VGCSWKVDEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g----~~~~~~Pd~~Ty~~Li~~~~~~g~~~~ 208 (229)
.|+.|+|.++...|..-+ -.|.|+|+...---..+-+...|+.|+
T Consensus 496 ~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 496 LGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred cCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999976332 114567887766667777888888777
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.9 Score=42.17 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=73.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..+.+.+.++..+|.+-|+.+... . |+ ....-.+=.+|.+.|+..+|.++++.-..+..-|...|..|=.+|...|+
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l-~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALAL-D-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhc-C-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence 345567899999999999888653 3 55 45566677899999999999999999876654467899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKR 179 (229)
Q Consensus 167 ~~~A~~~f~~M~~ 179 (229)
..+|..-+.|+..
T Consensus 424 ~~~a~~A~AE~~~ 436 (484)
T COG4783 424 RAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888877653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.6 Score=43.31 Aligned_cols=108 Identities=11% Similarity=0.105 Sum_probs=75.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH-HcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV-EAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~-~~g~~~~A 170 (229)
+-+.|+-.+|.+-+-.--+-+. -|+.|--=|-.-|....-.++|...|+.-.-- .|+++-|-.||..|. +.|++.+|
T Consensus 602 ydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ekaali-qp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAALI-QPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHhcccHHHH
Confidence 3467888887766533222122 35555444444455555567788888864221 699999999998876 57899999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+++|+...++ ++ -|+-...-|++-+...|.-
T Consensus 680 ~d~yk~~hrk-fp----edldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 680 FDLYKDIHRK-FP----EDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHh-Cc----cchHHHHHHHHHhccccch
Confidence 9999999864 44 5788888899998888854
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.53 Score=43.87 Aligned_cols=122 Identities=13% Similarity=0.026 Sum_probs=89.3
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.+...+..|..+|+.-..... .--..|-.-|.+=-..|.+..|.++|+.-.+- .||...|++.|+-=.+....+.|..
T Consensus 118 mknk~vNhARNv~dRAvt~lP-RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w-~P~eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 118 MKNKQVNHARNVWDRAVTILP-RVDQLWYKYIYMEEMLGNIAGARQIFERWMEW-EPDEQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HhhhhHhHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhhHHHHHHH
Confidence 355566677777776654321 11234555566666678888888888874422 6999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|++.+- |+ |++.+|---.+-=.+.|.+..|+.|+....++.+.
T Consensus 196 IYerfV~--~H----P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 196 IYERFVL--VH----PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHhe--ec----ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998874 44 99999877777778888888898888876665544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.1 Score=39.89 Aligned_cols=74 Identities=12% Similarity=-0.015 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cC------CC--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKR---SG------VG--CSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~---~g------~~--~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|..++.++|-++++.|+++....+.+..=. .| +. .+..|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 567899999999999999999888865411 11 11 12259999999999999999999999999999888
Q ss_pred cCCCC
Q 026993 219 VPGGS 223 (229)
Q Consensus 219 ~~~~~ 223 (229)
..+-.
T Consensus 81 ~Y~I~ 85 (126)
T PF12921_consen 81 KYPIP 85 (126)
T ss_pred HcCCC
Confidence 65533
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.19 Score=43.87 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+-+.|+.++++|.-.|+. ||..+--+||++|++-|..
T Consensus 138 QQ~C~I~vLeqME~hGVm----PdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVM----PDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCC----CchHHHHHHHHHhcccccc
Confidence 346789999999999997 9999999999999988864
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.25 Score=38.14 Aligned_cols=89 Identities=11% Similarity=0.068 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDL--GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~--~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+-..+...|++++|...|+++.....+++. ...-.|-..+...|++++|...++..... ......+...=+.|.+.
T Consensus 53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHC
Confidence 3456677899999999999999765321322 23334667888999999999999775432 23345666677789999
Q ss_pred CCHHHHHHHHHH
Q 026993 165 GSKESTVRIYGL 176 (229)
Q Consensus 165 g~~~~A~~~f~~ 176 (229)
|+.++|...|..
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 999999999975
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.073 Score=36.29 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEE----ID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
+|+.+=..|.+.|++++|...|++..+ -| .|+ ..+|+.|=..|...|++++|.+.|++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555566666666655554331 12 122 34555555555555555555555544
|
... |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.22 Score=44.32 Aligned_cols=122 Identities=7% Similarity=-0.084 Sum_probs=75.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLT-DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~-~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-+.|.+..++..|+.+|.+-...+ |--+||- -+-..+-..++.++|.+++.+..+...-|+-....+-.+|.-.++.
T Consensus 263 skvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh
Confidence 345566666777777666654433 3333332 2333444556777777777766554333555666677777888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|-|++.|.++...|+. +-.-|+-+-=+|.-.+++|.+.--|+...
T Consensus 341 E~AlryYRRiLqmG~~-----speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQ-----SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHHHhcCC-----ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 8888888888888874 44555555555556677777666555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.49 Score=48.99 Aligned_cols=127 Identities=13% Similarity=0.112 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--cC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQRE--YQ--QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVR 159 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~--~~--~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~ 159 (229)
|+..+.-....++.+.|.+++++.... ++ +--.-+|.++++..---|.-+...++|++..+. .| ...|..|..
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 345566666677777888877776543 21 011234666666666666666667777777654 34 346777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 160 AVVEAGSKESTVRIYGLMKRS-GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~-g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|-+.+..++|-++|+.|.++ | -..-+|...++.+.+..+.+.|+.++.+..+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 888888888888888888653 3 13356777777777777777777777766554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.29 Score=43.45 Aligned_cols=105 Identities=19% Similarity=0.223 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
...+..|...|+...|.++ +++++-||-.-|-..|.+|++.|++++-+++..+ . -..+.|-.+|..|.+.|
T Consensus 181 ~~Ti~~li~~~~~k~A~kl----~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKL----KKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K-KSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHCCCHHHHHHH----HHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-CCCCChHHHHHHHHHCC
Confidence 3567777888888777654 4444338999999999999999999988776433 1 14588999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
+.++|...... + || .--+..|.+.|++.+|.+.-
T Consensus 252 ~~~eA~~yI~k-----~-----~~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPK-----I-----PD----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHh-----C-----Ch----HHHHHHHHHCCCHHHHHHHH
Confidence 99999887665 4 33 45677888999999986653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.071 Score=36.34 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+|+.+=..|...|++++|++.|++..+. |-. .|+ ..+|.-|-..+...|+.++|.+++++.-+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 58899999999999999999999987642 322 244 67889999999999999999999987654
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.65 Score=40.03 Aligned_cols=87 Identities=9% Similarity=0.090 Sum_probs=66.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHc
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQD---LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVRAVVEA 164 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd---~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~~~~~~ 164 (229)
+.+.|++++|+..|+.+.+.+. -+ ...+--+-..|...|++++|...|..+.+.- |+ ...+=-+...|...
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP-~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYP-DSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHHHHHHHc
Confidence 3567999999999999987643 12 1345566678899999999999999997643 22 23444456667789
Q ss_pred CCHHHHHHHHHHHHHc
Q 026993 165 GSKESTVRIYGLMKRS 180 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~ 180 (229)
|+.++|.++|++..+.
T Consensus 231 g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 231 GDTAKAKAVYQQVIKK 246 (263)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998875
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.99 Score=42.72 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHhhhC-C-CCCHHHHHHHHHHHHHcCC
Q 026993 98 CAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKN--------GLTGEVDRLIGELEEI-D-GGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~--------g~~~~A~~lf~~M~~~-g-~pd~~tyn~lI~~~~~~g~ 166 (229)
...|..+|++..+ .. || ...|..+-.+|... .++..|.+........ . ..+...|.++--.+...|+
T Consensus 358 ~~~A~~lle~Ai~-ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK-SE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH-hC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 5578888877755 33 55 34455443333221 1233444444433222 1 2344678777555667899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|...|++..+.. |+...|..+-+.+...|+.++|.+.+++..+..|.
T Consensus 436 ~~~A~~~l~rAl~L~------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 436 TDEAYQAINKAIDLE------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 999999999998754 88899999999999999999999999988776443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.49 Score=37.65 Aligned_cols=88 Identities=14% Similarity=0.044 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-.+...|++++|..+|+.... +. |+.. -|-.|=-++-..|++++|...|.....-..-|...+=.+=.++.+.|+.+
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~-~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTI-YD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHH-hC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 346678888888888877754 33 4333 34444445556788888888888765544113445555556678888888
Q ss_pred HHHHHHHHHHH
Q 026993 169 STVRIYGLMKR 179 (229)
Q Consensus 169 ~A~~~f~~M~~ 179 (229)
.|.+.|+.-+.
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 88888876554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.5 Score=41.41 Aligned_cols=128 Identities=9% Similarity=0.064 Sum_probs=103.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCH-HHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE-LEEIDGGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~-M~~~g~pd~-~tyn~lI~~~~~ 163 (229)
..++...|..-+..|..+|...++. ....++++++++|.-||. ++-+-|.++|+- |+.-| |. .--+.-++-+.+
T Consensus 371 ~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 371 QYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHH
Confidence 4577777778889999999999987 441499999999999986 556889999985 66654 33 233567788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-++-..|.-+|+....++.. ||. ..|.-+|.-=...|++..+.++-+.+...++
T Consensus 448 lNdd~N~R~LFEr~l~s~l~----~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLS----ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hCcchhHHHHHHHHHhccCC----hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 99999999999999988775 554 7899999999999999999999987777654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.23 Score=33.12 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=31.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.|.+.+++++|.++++.+.+.+.-+...|...=..|.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666655544223445555555556666666666666666544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.18 Score=49.21 Aligned_cols=110 Identities=15% Similarity=0.163 Sum_probs=80.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
+.+-.+..+|..|+.+.+.++.+- .-..-|..+-+-|+..|+++-|+++|-+-- .++--|..|.++|+++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHH
Confidence 444455677888888888776531 112347778889999999999999998753 4778899999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
+|+++-.+-. |-. .....|-+--.-+-+.|++.+|++++-
T Consensus 809 da~kla~e~~--~~e----~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPE----ATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHhc--Cch----hHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 9998765443 322 455667666667778888888887763
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.71 Score=43.12 Aligned_cols=118 Identities=10% Similarity=-0.001 Sum_probs=86.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---------HHHHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD---------GRGLSRVVRAVV 162 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd---------~~tyn~lI~~~~ 162 (229)
+-|++++++++..|++..+++. .-...||-.-..+.-.+++++|.+-|+.-.+-. |+ ...--.++-.-
T Consensus 438 ~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-~~~~~~~v~~~plV~Ka~l~~q- 514 (606)
T KOG0547|consen 438 LYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-PREHLIIVNAAPLVHKALLVLQ- 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc-cccccccccchhhhhhhHhhhc-
Confidence 3478899999999999988754 334457777777889999999999998754321 22 11111122111
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
-.++++.|.++..+-.+..- -....|-+|-.--...|++++|.++|++--
T Consensus 515 wk~d~~~a~~Ll~KA~e~Dp-----kce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 515 WKEDINQAENLLRKAIELDP-----KCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhhhHHHHHHHHHHHHccCc-----hHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23788999999988877653 467899999999999999999999998643
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.51 Score=41.05 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEY 191 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~ 191 (229)
+.+++.++..+..+|+++.+.+.++++.....-|...|-.||.+|.+.|+...|.+.|+.|.. .|+. |-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~----P~~~ 228 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID----PAPE 228 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC----ccHH
Confidence 457889999999999999999999999887644889999999999999999999999998865 6886 9998
Q ss_pred HHHHHHHHH
Q 026993 192 VGKVLSKGL 200 (229)
Q Consensus 192 Ty~~Li~~~ 200 (229)
+.......+
T Consensus 229 ~~~~y~~~~ 237 (280)
T COG3629 229 LRALYEEIL 237 (280)
T ss_pred HHHHHHHHh
Confidence 888777774
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.97 Score=41.83 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=23.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELE 144 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~ 144 (229)
.|.+.|++++|+..|+.-.+ .. ||. .+|..+-.+|.+.|++++|...+++-.
T Consensus 84 AL~~lGryeEAIa~f~rALe-L~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 84 SLFSKGRVKDALAQFETALE-LN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHcCCHHHHHHHHHHHHh-hC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555544322 12 331 234445555555555555555554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.3 Score=32.22 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-EEELANEVEREF 216 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-~~~~A~~v~~e~ 216 (229)
.+|..+=..+.+.|++++|+..|.+-.+..- -+...|..+-.++.+.| +.++|.+.++..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-----~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP-----NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST-----THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 3444444445555555555555555444321 23334444444455555 355555544433
|
... |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.33 E-value=1.4 Score=45.82 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.|..|...|-+.+++++|.++++.|.++-+-....|...+..+.+...-+.|.+++
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHH
Confidence 34444444444444444444444444332112334444444444444433333333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=94.32 E-value=1.3 Score=41.90 Aligned_cols=97 Identities=18% Similarity=0.062 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
++|.-|-..|-+.|+.++|.+..++-.+. .|+ +-.|.+--+-|-+.|++++|.+.+++-..... -|.+.=+-.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-----~DRyiNsK~ 268 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-----ADRYINSKC 268 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-----hhHHHHHHH
Confidence 34455567788999999999999987654 466 45788888889999999999999999988876 699999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
.+.+.++|++++|+++..-+-+..
T Consensus 269 aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 269 AKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhcCCC
Confidence 999999999999999998876654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.9 Score=40.86 Aligned_cols=125 Identities=17% Similarity=0.082 Sum_probs=96.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
.+-..|+.+.|++..+.-.+ .. |. +-.|..--..|-+.|++++|.+..++-.+-..-|...=|--+..+.++|++++
T Consensus 203 hyd~~g~~~~Al~~Id~aI~-ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIE-HT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHh-cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 34578999999988886654 44 65 55788888899999999999999998877664588888999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVG------KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty------~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+++....+.+.. ..-|..-. .-.-.+|.+.|+...|.+-|....++
T Consensus 281 A~~~~~~Ftr~~~~--~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 281 AEKTASLFTREDVD--PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHhhcCCCCC--cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999988776643 00233211 44567889999999998877765553
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.26 E-value=2.2 Score=39.70 Aligned_cols=122 Identities=10% Similarity=0.074 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGL 176 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~ 176 (229)
+..+|++++.+...-+. .|..+...|-+.|-+.|+-..|.+...+--.--..|.-|..=|-.-|....-.++|+..|++
T Consensus 573 d~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 573 DPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred CHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44444444433322233 46667777778888888888887766553221133555555555666666677888888876
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHhhhcCCCCCC
Q 026993 177 MKRSGVGCSWKVDEYVGKVLSKGL-RRFGEEELANEVEREFCWVPGGSLE 225 (229)
Q Consensus 177 M~~~g~~~~~~Pd~~Ty~~Li~~~-~~~g~~~~A~~v~~e~~~~~~~~~~ 225 (229)
-.- +. |+.+-|-.||-.| -+.|+...|.+++++..+.+|.+++
T Consensus 652 aal--iq----p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedld 695 (840)
T KOG2003|consen 652 AAL--IQ----PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLD 695 (840)
T ss_pred HHh--cC----ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchH
Confidence 542 33 9999999988766 5789999999999999999988775
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.1 Score=44.38 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=92.3
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTL--AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~--~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
...+++..|++-...+.+++ || ..|..++.+| .|.|+.++|..+++.....+.-|.-|..++-..|-..|+.|+|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 35677888888888776653 44 3567777765 5789999999999988766633889999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+|++.... - |+..-...+..++.+.+.+..-.++--+|.+.
T Consensus 97 ~~~Ye~~~~~--~----P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 97 VHLYERANQK--Y----PSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHhh--C----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999988754 2 88888889999999999887755554444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.31 Score=32.48 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=47.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
.+.+.++++.|+++++.+.+... .|...|...=.+|.+.|++++|.+.|+...+.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46789999999999999977543 466777778889999999999999999987664
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.99 Score=39.06 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=84.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG----LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~----ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
..+.|..+.+.|.+..+.|.+. . |-- .-++.|....-.+++.+|.-+|++|-++-.|+..+-|-+-..+...|
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i-d--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI-D--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-c--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 3455666788888888887652 1 222 34456666666778999999999998755789999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e~~~ 218 (229)
++++|..++++-..+.- -|.-|..-+|-.-...|.-.++ .+.+..++.
T Consensus 222 ~~eeAe~lL~eaL~kd~-----~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDA-----KDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 99999999999987654 3445554455444556655443 344444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.38 Score=31.72 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG-SKESTVRIYGLMKR 179 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g-~~~~A~~~f~~M~~ 179 (229)
..+|..+=..+.+.|++++|...|.+..+...-+...|..+=.+|.+.| +.++|++.|++-.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3456666667777788888888887766554224567777777777777 67888877766543
|
... |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=41.84 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
++++..|..||+.-...-. .++..|-.-+.+=-|++.+++|..+|+.-..- .|-+ ..|=--|..=-..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 4566678888887755422 57788888999999999999999999986543 2332 3455555566778999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|++-.+ |+||...|.+.|+-=.+...++.|+.|+..+--
T Consensus 164 ferW~~------w~P~eqaW~sfI~fElRykeieraR~IYerfV~ 202 (677)
T KOG1915|consen 164 FERWME------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL 202 (677)
T ss_pred HHHHHc------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe
Confidence 988653 459999999999999999999999999986644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.04 E-value=1 Score=35.28 Aligned_cols=78 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 90 RELIRQGECAVAVHVFSTIQREY--QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~--~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
....+.|+++.|.+.|+.+...+ ..--.-..-.|+.+|.+.|++++|...++...+.. .|+ +-|--.+.|++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence 44567888888888888887763 21123445578888888888888888888877665 443 56777777777665
Q ss_pred CHH
Q 026993 166 SKE 168 (229)
Q Consensus 166 ~~~ 168 (229)
+.+
T Consensus 97 ~~~ 99 (142)
T PF13512_consen 97 QDE 99 (142)
T ss_pred Hhh
Confidence 544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.86 Score=43.08 Aligned_cols=103 Identities=12% Similarity=-0.060 Sum_probs=70.5
Q ss_pred cCCHHHHHHHHHHHHHH---cC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 95 QGECAVAVHVFSTIQRE---YQ--QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~---~~--~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
.+.+.+|...|+..... .. ++ ...+++.|=+.|-|.+++++|...|+.-.....-|..+|+++=-.|...|.+|
T Consensus 427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld 506 (611)
T KOG1173|consen 427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD 506 (611)
T ss_pred HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence 45677788887766532 11 11 23356666678888888888888887765544347778888877788888888
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
.|.+.|.+-. ++. ||..+-+.|++.+...
T Consensus 507 ~Aid~fhKaL--~l~----p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 507 KAIDHFHKAL--ALK----PDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHH--hcC----CccHHHHHHHHHHHHh
Confidence 8888887765 344 8887777777765544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=1 Score=42.87 Aligned_cols=117 Identities=13% Similarity=0.075 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH--HHHHH--
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV--VRAVV-- 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l--I~~~~-- 162 (229)
+=+......|++++|.+.-..+...+. -|...+..=+-++.+.+++++|.++.+.=. -.-++|+. =.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~-----~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNG-----ALLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc-----hhhhcchhhHHHHHHHH
Confidence 334444556677777776666654332 233333344446777777777774443211 11233333 45555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+.+..|+|+..++ |+. ++. .+--.=-..|-+.|++++|..||+.+-+
T Consensus 91 rlnk~Dealk~~~-----~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHh-----ccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5567777777665 443 332 2444444556677777777777776633
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1.4 Score=38.21 Aligned_cols=128 Identities=14% Similarity=0.125 Sum_probs=91.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHH-----
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRA----- 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~----- 160 (229)
++..+.-.|++...+..++++++.+ . -+...-..|..+--+.|+++.|...|++.++.. +.|..+++.++..
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3444445567777788888887753 3 466666677777777899999999999887766 7788888887753
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK--VLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~--~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.-+.++..|.+.|.+..+..- -|.+.-| +|+--| .|+..+|.+....+....|+-
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~-----~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDP-----RNAVANNNKALCLLY--LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred eecccchHHHHHHHhhccccCC-----CchhhhchHHHHHHH--HHHHHHHHHHHHHHhccCCcc
Confidence 3445678888888988887654 3444333 444444 588999999999888875543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.42 E-value=4.3 Score=37.87 Aligned_cols=96 Identities=11% Similarity=-0.007 Sum_probs=74.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
|-..|-.|=.+|.-.++..-|.-.|.+-.+-..-|...|.+|=..|-+.++.++|...|+.-...|. -+...|.-
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-----te~~~l~~ 471 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-----TEGSALVR 471 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-----cchHHHHH
Confidence 4445555556666777777777777765543222678999999999999999999999999988776 35677788
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 026993 196 LSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|-+.+-+.++..+|.+.+...
T Consensus 472 LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999998888644
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.42 E-value=2.5 Score=39.27 Aligned_cols=125 Identities=14% Similarity=0.152 Sum_probs=84.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC-CCCHHHHHHHHHHHHHc
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-ID-GGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-~g-~pd~~tyn~lI~~~~~~ 164 (229)
+.+++++.+|.++|..+.++.. .|- -+.-+-+|++|.-++ ++.-.....+..+ .| .+-...|-.|.. .+.
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y~~ 92 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVA--YKQ 92 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHH--HHh
Confidence 5688999999999999977633 021 345667888888754 4444444555543 33 444444444443 588
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 165 GSKESTVRIYGLMKRS--GVGCSW--------KVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~--g~~~~~--------~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+++|.+.+..-.+. +-..+| -+|-+-=++.+.++.+.|++.+|+.+++.+.+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8999999998776554 321111 145555588999999999999999999877653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.1 Score=43.09 Aligned_cols=100 Identities=18% Similarity=-0.014 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR-GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~-tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
.++--++..|-+.|+++.|....+.-... .|+.+ -|-+=-+.++++|.+++|..++++-.+..- ||.+.=+--
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-----aDR~INsKc 445 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-----ADRAINSKC 445 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-----hhHHHHHHH
Confidence 44556788899999999999999987642 55543 444444788999999999999999988765 898887778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+-+.++.+.++|.++.-.+-+..-+.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhcccch
Confidence 888899999999999998777754333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.8 Score=33.92 Aligned_cols=103 Identities=13% Similarity=0.047 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYV 192 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~T 192 (229)
....|+.=... .+.|++++|.+.|+.+..+- .-..-.-=-|+.+|.+.|++++|...+++.++..-. .|+ +-
T Consensus 10 ~~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~-vd 84 (142)
T PF13512_consen 10 PQELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPN-VD 84 (142)
T ss_pred HHHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCC-cc
Confidence 34455554443 46789999999999998764 113356667899999999999999999998876543 376 56
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHHHhhhcCCCC
Q 026993 193 GKVLSKGLRRFGE-----------------EELANEVEREFCWVPGGS 223 (229)
Q Consensus 193 y~~Li~~~~~~g~-----------------~~~A~~v~~e~~~~~~~~ 223 (229)
|.-...|++.... +..|..-|+++-+..|.|
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 7777777665543 889988888777665544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=1.7 Score=39.27 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVV-RAVVEAGSKESTVRIYG 175 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI-~~~~~~g~~~~A~~~f~ 175 (229)
++++.+-....++.-+..-|++.|| +-.+++--|...+|+++|-.+......|..+|-+++ +.|.++|..+.|.++|-
T Consensus 374 qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 4444444444444433314555555 456888899999999999876532234778887766 56789999999998776
Q ss_pred HHHHcCCCCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCCC
Q 026993 176 LMKRSGVGCSWKVDEYVG-KVLSKGLRRFGEEELANEVEREFCWV--PGGSLEN 226 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty-~~Li~~~~~~g~~~~A~~v~~e~~~~--~~~~~~~ 226 (229)
.|... .+.++. -.+-+-|-+++.+--|.+-|+++++. .+..|++
T Consensus 453 k~~t~-------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 453 KTNTP-------SERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred hcCCc-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 66432 233443 44557788999999999999999886 4445543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=92.87 E-value=6.5 Score=34.86 Aligned_cols=104 Identities=8% Similarity=0.001 Sum_probs=76.4
Q ss_pred hcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 94 RQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 94 ~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.| .+++++..++.+.+... -+..+|+.---.+-+.|+ .+++..++++|.+...-|..+|+-.-..+.+.|++++|
T Consensus 83 ~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHH
Confidence 345 57899999988876533 344556654444556665 36788889898876644789999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
++.++++++... -|...|+-....+.+.
T Consensus 162 L~~~~~~I~~d~-----~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 162 LEYCHQLLEEDV-----RNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHCC-----CchhHHHHHHHHHHhc
Confidence 999999999876 4556665555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.5 Score=32.80 Aligned_cols=91 Identities=10% Similarity=-0.059 Sum_probs=69.9
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
.-+...|++++|..+|.-...-..-+..-|-.|=-.+=..|++++|++.|......... |-..|=-+=.++...|
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-----dp~~~~~ag~c~L~lG 117 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-----APQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----CchHHHHHHHHHHHcC
Confidence 34678999999999999987664224455556655666778999999999998877653 5566666778899999
Q ss_pred CHHHHHHHHHHhhhcC
Q 026993 205 EEELANEVEREFCWVP 220 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~ 220 (229)
+.+.|++-|+-.-...
T Consensus 118 ~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 118 NVCYAIKALKAVVRIC 133 (157)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999998655543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.77 E-value=3.4 Score=31.37 Aligned_cols=111 Identities=15% Similarity=0.067 Sum_probs=72.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
-.++..+.+.+........++++.+... .+...+|.+|..|++.++ ++..+.+.. . .+......+++-|-+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~--~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN--K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh--c---cccCCHHHHHHHHHHcC
Confidence 3567777777888888888888765533 566789999999998754 344444442 1 23344555788888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+++|.-++.+|. .. .+ ....+|+. .++++.|.+..++
T Consensus 84 l~~~~~~l~~k~~---~~----~~--Al~~~l~~---~~d~~~a~~~~~~ 121 (140)
T smart00299 84 LYEEAVELYKKDG---NF----KD--AIVTLIEH---LGNYEKAIEYFVK 121 (140)
T ss_pred cHHHHHHHHHhhc---CH----HH--HHHHHHHc---ccCHHHHHHHHHh
Confidence 8888888887763 21 11 22223332 2667777776664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.61 E-value=1.9 Score=32.81 Aligned_cols=89 Identities=9% Similarity=0.055 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
-...+|..+-+.+..+.+..+++.+...+..+...+|.+|..|++.. .++.++.+.. . .+.+...-+++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~--------~~~yd~~~~~~ 77 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--K--------SNHYDIEKVGK 77 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--c--------cccCCHHHHHH
Confidence 35678899999999999999999988776446779999999999874 4455555542 1 23344444566
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 026993 199 GLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~ 218 (229)
-|.+.+.++++.-++..++.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~ 97 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN 97 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC
Confidence 66666666666555554443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.5 Score=36.49 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEID-----GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVG 193 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-----~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty 193 (229)
.|+.=++ +.+.|++.+|..-|.+-.++. .||..-| |=..+...|++++|-.+|..+.+.--.+++-||..-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall- 219 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL- 219 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH-
Confidence 5888775 457788999999999988764 3444444 667889999999999999999874322333355433
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-|-....+.|+.|+|+..|+++-+..|++
T Consensus 220 -Klg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 220 -KLGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred -HHHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 36677889999999999999887765553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=92.39 E-value=7.5 Score=34.45 Aligned_cols=116 Identities=9% Similarity=-0.080 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH--HHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDL-GLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK--EST 170 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~-~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~--~~A 170 (229)
.++.+.|+.+.+.+.+. . |+. ..|+.-=..+.+.| .+++|...++++.+...-+..+|+---..+-+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~l-n-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRL-N-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHH-C-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34455555555554432 1 221 22332222333344 355666666655544311333455333333344432 455
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
++++++|.+..- -|..+|+----.+...|++++|.+.+.++-
T Consensus 128 l~~~~kal~~dp-----kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I 169 (320)
T PLN02789 128 LEFTRKILSLDA-----KNYHAWSHRQWVLRTLGGWEDELEYCHQLL 169 (320)
T ss_pred HHHHHHHHHhCc-----ccHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 555555554432 245555555555555566666655555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.13 E-value=3.3 Score=38.66 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=83.2
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHhhhC--C--CCCHHHHHHHHHHHHHcCCHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLIN-TLAKNGLTGEVDRLIGELEEI--D--GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~-~~~k~g~~~~A~~lf~~M~~~--g--~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
....+.|.++.+.+++.| ||...|.-.-. .+...|++++|.+.|++.... . +-....|--+...++-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 456778999999987765 77777755553 455689999999999975431 1 2344556667777888999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH-------HHHHHHHHHhhhc
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE-------ELANEVEREFCWV 219 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~-------~~A~~v~~e~~~~ 219 (229)
|.+.|.++.+..- |-+-.++|-.- -++...|+. ++|.++|++....
T Consensus 324 A~~~f~~L~~~s~---WSka~Y~Y~~a-~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESK---WSKAFYAYLAA-ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccc---cHHHHHHHHHH-HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999987532 23666666432 233456777 7888888766554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.07 E-value=1.1 Score=41.54 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCCCCCHHHH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGL-MKRSGVGCSWKVDEYVG- 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~-M~~~g~~~~~~Pd~~Ty- 193 (229)
+.|...|+..-|..-++.|+.+|-+..+.| .+++..|+++|.-+|. |+...|.++|+- |+. + ||.-.|
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f-----~d~~~y~ 469 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--F-----PDSTLYK 469 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--C-----CCchHHH
Confidence 445555555555555555555555555555 4555555555554443 344555555542 221 1 343333
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 026993 194 KVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.--+.-+...++-+-|+.+|+
T Consensus 470 ~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 470 EKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHhCcHHHHHHHHH
Confidence 234444445555555555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.03 E-value=2.3 Score=40.34 Aligned_cols=123 Identities=10% Similarity=-0.060 Sum_probs=84.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh----hCC--CC-CHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELE----EID--GG-DGRGLSRVVRAV 161 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~----~~g--~p-d~~tyn~lI~~~ 161 (229)
-++.+.+....|.+.|.+-..... +|=+.-+-.++.- - .+.+.+|...|..-. +.+ .+ -..++|.|=+.|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-T-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee-h-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 356778899999999977654321 1322223333211 1 135677888876543 222 22 235788888999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|.++.++|+..|+.-....- -|.-||+++-=.+...|+++.|...|.+.--.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~-----k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSP-----KDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999999999999998876543 57788888888888899999999999765443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.3 Score=32.64 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=59.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc-
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA- 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~- 164 (229)
-..+.+.|++..|.+.|+.+...+. .|- .-..-.+..++-+.|++++|...|++..+.- .....-|.-.+.|.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999987732 121 2344567889999999999999999977654 22233455555555432
Q ss_pred ------------CCHHHHHHHHHHHHHc
Q 026993 165 ------------GSKESTVRIYGLMKRS 180 (229)
Q Consensus 165 ------------g~~~~A~~~f~~M~~~ 180 (229)
+...+|+..|++.+..
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~~ 119 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIKR 119 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHHHHHHHHH
Confidence 2335677777777654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.75 Score=42.53 Aligned_cols=95 Identities=9% Similarity=-0.020 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
+...|+.+=.+|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|++++|.+.|.+..+.+- | .+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn-----~-~f 146 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL-NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN-----L-KF 146 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc-----h-hH
Confidence 5678999999999999999999999985544 4885 4699999999999999999999999987542 3 23
Q ss_pred HHHHHHH--HHHhcCCHHHHHHHHHHhhhc
Q 026993 192 VGKVLSK--GLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~--~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+.+ .+....+.++..+++++..+.
T Consensus 147 --~~i~~DpdL~plR~~pef~eLlee~rk~ 174 (453)
T PLN03098 147 --STILNDPDLAPFRASPEFKELQEEARKG 174 (453)
T ss_pred --HHHHhCcchhhhcccHHHHHHHHHHHHh
Confidence 22222 233444555777888877765
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.52 E-value=2.5 Score=37.15 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=62.5
Q ss_pred hcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCC----------------HHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGL----------------TGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~----------------~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
+.++++-....+..|++- .. .|+-+|+.||+.+-|..- -+=|..++++|+..| .||--+--
T Consensus 84 ~R~HveFIy~ALk~m~eyGVe-rDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~ 162 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVE-RDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIED 162 (406)
T ss_pred ccchHHHHHHHHHHHHHhcch-hhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHH
Confidence 345566555556667654 55 899999999988766542 234789999999999 99999999
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHH
Q 026993 156 RVVRAVVEAGS-KESTVRIYGLMKR 179 (229)
Q Consensus 156 ~lI~~~~~~g~-~~~A~~~f~~M~~ 179 (229)
.||++|.+.+. ..+..++.--|.+
T Consensus 163 ~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 163 ILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHhccccccHHHHHHHHHhhhh
Confidence 99999999884 3455555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.51 E-value=5.1 Score=37.38 Aligned_cols=125 Identities=11% Similarity=0.087 Sum_probs=96.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCHHHH-HHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE--YQQQDLGLLTDLINTLAKNGLTGEVDRLIGE-LEEIDGGDGRGL-SRVVRAVVE 163 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~--~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~-M~~~g~pd~~ty-n~lI~~~~~ 163 (229)
.+....|..-++.|..+|-..++. .. +++++|+++|.-+|. |+..-|.++|+- |.. .||...| +--+.-+.+
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~-h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVG-HHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCC-cceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHH
Confidence 566777778899999999999887 56 999999999998886 556789999975 554 3565433 456666778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-++-+.|..+|+.-++.= . -+ ...|-.+|+-=...|++.-+..+-+.|.+..|
T Consensus 479 inde~naraLFetsv~r~-~----~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 479 INDEENARALFETSVERL-E----KTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred hCcHHHHHHHHHHhHHHH-H----HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 899999999998554421 1 23 46899999999999999888888887777543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=91.51 E-value=4.8 Score=30.40 Aligned_cols=87 Identities=17% Similarity=0.040 Sum_probs=47.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHH-cCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---H-HHHHHHHHHHHHc
Q 026993 91 ELIRQGECAVAVHVFSTIQRE-YQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD---G-RGLSRVVRAVVEA 164 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~-~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd---~-~tyn~lI~~~~~~ 164 (229)
.+-..|+.++|+.+|+.-... ...++ ...+-.+=+.|..-|++++|..+|++.... .|+ . .....+--++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~-~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE-FPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHHC
Confidence 344567777777777766543 21011 123334445666777777777777765543 233 1 1111222355666
Q ss_pred CCHHHHHHHHHHHH
Q 026993 165 GSKESTVRIYGLMK 178 (229)
Q Consensus 165 g~~~~A~~~f~~M~ 178 (229)
|+.++|++.+-.-.
T Consensus 89 gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 89 GRPKEALEWLLEAL 102 (120)
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777665444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.47 E-value=8.1 Score=37.67 Aligned_cols=92 Identities=13% Similarity=-0.057 Sum_probs=65.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
..-+-+.|++..|..+++..-+...-+...|=.-+.--..+.++|.|..+|.+-...+ |...+|.--++-.--.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s------gTeRv~mKs~~~er~l 664 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS------GTERVWMKSANLERYL 664 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC------CcchhhHHHhHHHHHh
Confidence 3445567888888888887766542256778788888888888888888888776543 6666665555666667
Q ss_pred CCHHHHHHHHHHhhhcCC
Q 026993 204 GEEELANEVEREFCWVPG 221 (229)
Q Consensus 204 g~~~~A~~v~~e~~~~~~ 221 (229)
+.+|+|.++++|.-+.++
T Consensus 665 d~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFP 682 (913)
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 888888888887766543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.01 E-value=6.9 Score=31.24 Aligned_cols=116 Identities=22% Similarity=0.226 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
+.++..=.+.++.+.+..+++.++-- -..+.+-++-.+| +.+.|++.+|.++|+++.+.+ -...|..-+-++|-.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34555556778999999999999753 1124555666665 568999999999999997653 223455556667766
Q ss_pred CCHHHHHHHHH-HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 165 GSKESTVRIYG-LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 165 g~~~~A~~~f~-~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
..-|...+.+- +..+.|.. |+.. .|++.+.+......|...
T Consensus 90 ~~~D~~Wr~~A~evle~~~d----~~a~---~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGAD----PDAR---ALVRALLARADLEPAHEA 131 (160)
T ss_pred HcCChHHHHHHHHHHhcCCC----hHHH---HHHHHHHHhccccchhhh
Confidence 67777777774 46666543 4443 367777666666555553
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.86 E-value=4.3 Score=35.65 Aligned_cols=27 Identities=4% Similarity=0.144 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhCC----CCCHHHHHHHHHH
Q 026993 134 GEVDRLIGELEEID----GGDGRGLSRVVRA 160 (229)
Q Consensus 134 ~~A~~lf~~M~~~g----~pd~~tyn~lI~~ 160 (229)
..|..+|+.|++.. .++.+++.+|+.+
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 33445555554443 3344445444443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.74 E-value=6.6 Score=34.49 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHH--c-CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCC-
Q 026993 97 ECAVAVHVFSTIQRE--Y-QQQDLGLLTDLINTLAKNGL----TGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGS- 166 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~--~-~~pd~~ty~~LI~~~~k~g~----~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~- 166 (229)
....|..+|+.|++. + ..++-+.+.+|+.+ ..+. .++++..|+.+...| +-|..-+-+-|-+++..-.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 355789999999988 2 24788899999877 3333 466788899998888 5566667777767765543
Q ss_pred --HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC--C---HHHHHHHHHHhhhcC
Q 026993 167 --KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG--E---EELANEVEREFCWVP 220 (229)
Q Consensus 167 --~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g--~---~~~A~~v~~e~~~~~ 220 (229)
..++.++++.+.+.|+. +-...|.++ ..++-.+ . ++.-.++.+++++..
T Consensus 196 ~~v~r~~~l~~~l~~~~~k----ik~~~yp~l-GlLall~~~~~~~~~~i~ev~~~L~~~k 251 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVK----IKYMHYPTL-GLLALLEDPEEKIVEEIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHHHHHHHcCCc----cccccccHH-HHHHhcCCchHHHHHHHHHHHHHHhhCc
Confidence 34688999999999996 666667643 3333233 3 333455555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=90.45 E-value=6 Score=33.55 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=62.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHH-
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLL---TDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVE- 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty---~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~- 163 (229)
-..+.+.|+++.|.+.|+.+...+. -..... -.+..+|-+.|++++|...|++..+.. .-..+-|.-.+.|.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP-~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYP-FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 3445678999999999999987643 222333 245678899999999999999988765 2223456666666653
Q ss_pred -cC------------------CHHHHHHHHHHHHHc
Q 026993 164 -AG------------------SKESTVRIYGLMKRS 180 (229)
Q Consensus 164 -~g------------------~~~~A~~~f~~M~~~ 180 (229)
.+ ...+|++.|++.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 11 135677788877764
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.053 Score=41.62 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=38.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+++.+.+.+.+......++.+.+. .. -+....|.++..|++.++.++..+++... +..-...++.-|-+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTS------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSS------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHcccc------cccCHHHHHHHHHhcch
Confidence 444444455555555555555433 22 33455555555555555545554444411 11223345555555555
Q ss_pred HHHHHHHHHHH
Q 026993 167 KESTVRIYGLM 177 (229)
Q Consensus 167 ~~~A~~~f~~M 177 (229)
+++|.-+|.+|
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555544
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=90.19 E-value=22 Score=35.68 Aligned_cols=118 Identities=10% Similarity=-0.006 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
|+.++|..++.++.++-. .+...|-+|=..|=..|+++++...+----....-|.--|-.+=.-..+.|.++.|.-+|.
T Consensus 153 g~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 666666666666554422 3444566666666666666665554433322222234455555555555555556655555
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-+...- +|.--+-==..-|-+.|+...|..=|.++-..
T Consensus 232 rAI~~~p-----~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 232 RAIQANP-----SNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHhcCC-----cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 5554321 12111111223344455555555555544443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.14 E-value=4.3 Score=35.63 Aligned_cols=96 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
.+.+++.+|+..|.+-.+ +..-|.+.|.-=--+|++.|+++.|++=-+.-..-+..-..+|..|=.+|...|++++|.+
T Consensus 92 m~~~~Y~eAv~kY~~AI~-l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE-LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHhhhHHHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 345678888888877654 3313677787778899999999999887666544321125799999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHH
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
-|++-.+ +. ||--+|-.
T Consensus 171 aykKaLe--ld----P~Ne~~K~ 187 (304)
T KOG0553|consen 171 AYKKALE--LD----PDNESYKS 187 (304)
T ss_pred HHHhhhc--cC----CCcHHHHH
Confidence 9987765 33 88888754
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=89.98 E-value=2.6 Score=37.36 Aligned_cols=84 Identities=15% Similarity=0.124 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
+-+..|.-+...|+...|.++-.+-+ .||-.-|-..|.+|+..|++++-.++-.. .-. | +-|-..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs----P--IGyepFv~ 245 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---VPDKRFWWLKIKALAENKDWDELEKFAKS----KKS----P--IGYEPFVE 245 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC----C--CChHHHHH
Confidence 45566777888999999988877764 58999999999999999999977664332 212 4 67888999
Q ss_pred HHHhcCCHHHHHHHHHH
Q 026993 199 GLRRFGEEELANEVERE 215 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e 215 (229)
.|.+.|+..+|.++...
T Consensus 246 ~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHCCCHHHHHHHHHh
Confidence 99999999999988765
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=14 Score=37.47 Aligned_cols=121 Identities=8% Similarity=0.014 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-------------
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG------------- 151 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~------------- 151 (229)
..++..+.+.+++++|.++.+.-.+... .+....|..+ .|...++.++|..+ .+...-..+.
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 3567777799999999998885444321 1333444444 67777778887776 3221111111
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 152 ------RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 152 ------~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
..+-+|-.+|-+.|+.++|..+|++..+-.. -|..+.|-+--.|... ++++|.+++...
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-----~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-----DNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 3444455566677999999999999998764 4667777777788888 999998887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=89.63 E-value=10 Score=37.85 Aligned_cols=124 Identities=11% Similarity=0.009 Sum_probs=80.1
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC--HHHHHHHHHHHH
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGGD--GRGLSRVVRAVV 162 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~pd--~~tyn~lI~~~~ 162 (229)
...|+++.|...++.........+ ...++.+-..+...|++++|...+.+.... |.+. ..+++.+-..+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 467888999888877654321022 134455556677889999999988876542 2111 245566666788
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 163 EAGSKESTVRIYGLMKR----SGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~----~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
..|++++|.+.+.+... .|... .| ....+..+-..+...|++++|...+++...
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQ--LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 89999999998877644 23210 01 334455566667777999998888876644
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.52 E-value=7.9 Score=36.81 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=46.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhc
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRF 203 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~ 203 (229)
-|--.|.++.|..-|+.-.....-|...||-|=..+....+.++|+.-|.+-++.- |+- +=||.=| +|...
T Consensus 439 Ly~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq------P~yVR~RyNlgI-S~mNl 511 (579)
T KOG1125|consen 439 LYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ------PGYVRVRYNLGI-SCMNL 511 (579)
T ss_pred HHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC------CCeeeeehhhhh-hhhhh
Confidence 34445666666666665544321145566666666666666666666666665431 332 3455333 34566
Q ss_pred CCHHHHHHHHHH
Q 026993 204 GEEELANEVERE 215 (229)
Q Consensus 204 g~~~~A~~v~~e 215 (229)
|.+++|.+.|-+
T Consensus 512 G~ykEA~~hlL~ 523 (579)
T KOG1125|consen 512 GAYKEAVKHLLE 523 (579)
T ss_pred hhHHHHHHHHHH
Confidence 666666666654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=11 Score=37.55 Aligned_cols=126 Identities=11% Similarity=-0.074 Sum_probs=84.9
Q ss_pred HHhcCCHHHHHHHHHHHHHH---cCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC----CHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE---YQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGG----DGRGLSRVV 158 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~---~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~p----d~~tyn~lI 158 (229)
+...|+++.|...+.+.... ...+. ..+++.+-..+...|++++|...+++.... |.+ ....+..+-
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 45689999999999887643 22122 234555666788899999999998875432 211 223455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS--GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+...|++++|.+.+.+.... .... ......+..+-......|+.++|.+.+.+....
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQP--QQQLQCLAMLAKISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCc--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6677889999999999887542 1110 012344555666788899999999998877554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=88.74 E-value=19 Score=32.88 Aligned_cols=120 Identities=9% Similarity=0.005 Sum_probs=97.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
.|++..|.++...-.+.-. --+..|..=..+--..|+.+.|.....+.-+.. .++...+=+.-.-....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 6899999987766443222 224456666677788899999999999988764 77788888899999999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 174 YGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+..+.+- -+..........|.+.|++.....++..+.+..
T Consensus 176 v~~ll~~~p-----r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~ 217 (400)
T COG3071 176 VDQLLEMTP-----RHPEVLRLALRAYIRLGAWQALLAILPKLRKAG 217 (400)
T ss_pred HHHHHHhCc-----CChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc
Confidence 999988774 467788999999999999999999998888753
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=88.62 E-value=6 Score=29.32 Aligned_cols=61 Identities=13% Similarity=-0.070 Sum_probs=49.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++..-+.+|..+|- |-..+|.+
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~---~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg~-----p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLC---YPDLEPWLALCE--WRLGLGSALESRLNRLAASGD-----PRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCC---CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCCC-----HHHHHHHH
Confidence 45677899999999888775 589999988765 588888888888889998886 77777753
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.57 E-value=4.1 Score=36.94 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHHH-cCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026993 97 ECAVAVHVFSTIQRE-YQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRI 173 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~-~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~ 173 (229)
++..|.+.|+-+-+. .. -|.+ -=-++-+.+.-..++++..-.++.++.-- .-|.+-|| +-.++|..|.+.+|.++
T Consensus 338 HlKiAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHH
Confidence 566778777666443 22 1221 12234455555667899888888887655 55666676 56889999999999999
Q ss_pred HHHHHHcCCCCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHh
Q 026993 174 YGLMKRSGVGCSWKVDEYVGK-VLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 174 f~~M~~~g~~~~~~Pd~~Ty~-~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
|-......+ -|-++|. .|-+++.+.++.+.|..++-.+
T Consensus 416 f~~is~~~i-----kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 416 FIRISGPEI-----KNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhhhcChhh-----hhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 976654444 5788985 5567889999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.40 E-value=9.3 Score=35.98 Aligned_cols=124 Identities=7% Similarity=-0.072 Sum_probs=79.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
|....+-.+..+.|+.-..--. .||+ |..==.++.-.+++++|..=|++-.+-..-+...|-.+=-+..|.++++++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~n~dv--YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPENPDV--YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCCCCch--hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555554433211 1333 322223333445778888888877654322567777777788899999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+..|++-+++ ++ -...+|+-.-..+...++++.|.+.|+-..+..+.
T Consensus 448 m~~Fee~kkk-FP----~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 448 MKTFEEAKKK-FP----NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHh-CC----CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999998875 32 23345666777889999999999999876665443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=88.29 E-value=5.9 Score=39.21 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=61.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH-----------
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV----------- 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l----------- 157 (229)
.+.|...|+++.|.++|-+- -.++.-|++|+++|+.++|.++-.+.... .-..+.|-+=
T Consensus 772 adhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~-e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP-EATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc-hhHHHHHHHhHHhHHhhcchh
Confidence 34455566777776666322 23667777888888888887776553210 1122333222
Q ss_pred ---------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 ---------------VRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 ---------------I~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|..|-+.|+.|+.+++.++-. ||. -|---+-+-|...|++..|++-|.|.+++
T Consensus 842 eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h---------~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 842 EAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHH---------GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred hhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhC---------hhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 333444444444443333221 333 34445666777778888888777766553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.4 Score=36.77 Aligned_cols=84 Identities=8% Similarity=-0.030 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHH
Q 026993 95 QGECAVAVHVFSTIQRE----YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~----~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+++.+...+-.++.. +. |+...|+. | -++-.-+.+++..+...=.+-| .||.++++.+|+.+.+.++..+
T Consensus 77 ~~~idd~~~~LyKlRhs~~a~~~-~~~~~~~~-i-rlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~ 153 (418)
T KOG4570|consen 77 REEIDDAEYYLYKLRHSPNAWYL-RNWTIHTW-I-RLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKD 153 (418)
T ss_pred ccchhHHHHHHHHHhcCcchhhh-ccccHHHH-H-HHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHH
Confidence 45666776666666543 34 55444332 2 3344456778888888888889 9999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 026993 170 TVRIYGLMKRSG 181 (229)
Q Consensus 170 A~~~f~~M~~~g 181 (229)
|.++.-+|....
T Consensus 154 aa~vvt~~~~qe 165 (418)
T KOG4570|consen 154 AASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHHHH
Confidence 999887776443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=87.66 E-value=12 Score=34.86 Aligned_cols=135 Identities=10% Similarity=-0.041 Sum_probs=92.9
Q ss_pred hhhcHHHHHHHHHhcCCHHHHHHHHHHHHHH--cCCC----CHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCC
Q 026993 81 IKHDLLAALRELIRQGECAVAVHVFSTIQRE--YQQQ----DLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGD 150 (229)
Q Consensus 81 ~~~d~~~vl~~l~~~g~~~~A~~vf~~m~~~--~~~p----d~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd 150 (229)
+.+.+..++.-+.=.|+-+.+++.+..-.+. +..| -...|..++..++- ....++|.++++++.++ -|+
T Consensus 187 LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-yP~ 265 (468)
T PF10300_consen 187 LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-YPN 265 (468)
T ss_pred CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-CCC
Confidence 4455566777777789999999888765432 1101 23456666655554 56889999999999876 688
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 151 GRGLSRVVRAV-VEAGSKESTVRIYGLMKRS--GVGCSWK-VDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 151 ~~tyn~lI~~~-~~~g~~~~A~~~f~~M~~~--g~~~~~~-Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
...|.-.-.-+ ...|++++|++.|++.... ... + .....|... -.+.-.+++++|.+.|.++.+..
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~---Ql~~l~~~El~-w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK---QLHHLCYFELA-WCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH---hHHHHHHHHHH-HHHHHHchHHHHHHHHHHHHhcc
Confidence 88776665443 4678999999999976531 211 1 344555544 44667899999999999988754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=87.46 E-value=5.6 Score=32.51 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=58.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh
Q 026993 126 TLAKNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
.+...|++++|.+.|+++.... .|- ....=.+..++.+.|++++|...|++..+.--. .|. .-|...+.|.+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~-~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPK-ADYALYMLGLSY 89 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TT-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---Ccc-hhhHHHHHHHHH
Confidence 4567899999999999998754 121 245667889999999999999999998765211 132 334444444443
Q ss_pred c-------------CCHHHHHHHHHHhhhcCCC
Q 026993 203 F-------------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 203 ~-------------g~~~~A~~v~~e~~~~~~~ 222 (229)
. +....|...|+++-+..|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 2 2234566667666554443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.46 E-value=15 Score=32.08 Aligned_cols=97 Identities=16% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQ-QQDLGL-LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~t-y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
|.-+=..+.+.|+.+.|..-|..-.+--. +|++.. |...+..-.-.....+|..+|+++.....-|+.+-.-|=-++.
T Consensus 159 W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 159 WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44455667777888888887777654322 244433 3333322222234566788888877654224455555556777
Q ss_pred HcCCHHHHHHHHHHHHHcC
Q 026993 163 EAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g 181 (229)
..|++.+|...+..|.+..
T Consensus 239 e~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 239 EQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HcccHHHHHHHHHHHHhcC
Confidence 8888888888888887764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=87.45 E-value=8.6 Score=32.58 Aligned_cols=74 Identities=9% Similarity=-0.035 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-CCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 124 INTLAKNGLTGEVDRLIGELEEID-GGDGRG--LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g-~pd~~t--yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
-..+.+.|++++|.+.|+++...- .+.... .=-+..+|.+.|++++|...|++..+.--. .|+ +-|.....|+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~-~~~a~Y~~g~ 114 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPN-IDYVLYMRGL 114 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCc-hHHHHHHHHH
Confidence 334567899999999999998765 322221 124567889999999999999999875322 143 3555556665
Q ss_pred H
Q 026993 201 R 201 (229)
Q Consensus 201 ~ 201 (229)
+
T Consensus 115 ~ 115 (243)
T PRK10866 115 T 115 (243)
T ss_pred h
Confidence 4
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=87.11 E-value=6.4 Score=37.29 Aligned_cols=64 Identities=11% Similarity=-0.010 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
+...|.++--.+...|+.++|...|++..+.. |+...|+.+-..|...|+.++|.+.|.+-...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45677777555666799999999999987664 78889999999999999999999999887654
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.10 E-value=1.7 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLM 177 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M 177 (229)
+|+.|=..|.+.|++++|.++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666777777777777777777764
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.95 E-value=17 Score=30.29 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=86.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGDGRGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd~~tyn~lI~~~ 161 (229)
.+-.++.+.|+..+|...|++-... +- .|...--.+-.+...-+++.+|...++++-+.. .||.. -.+-+.|
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~l 170 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTL 170 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHH
Confidence 4567788899999999999988777 66 677777777888888999999999999876653 45543 3455778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.-.|+.++|..-|+.....- |+...-.----.+.+.|+.++|..-+.
T Consensus 171 aa~g~~a~Aesafe~a~~~y------pg~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 171 AAQGKYADAESAFEVAISYY------PGPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HhcCCchhHHHHHHHHHHhC------CCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 88899999999898877642 443222223344667888777754433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.37 E-value=25 Score=33.87 Aligned_cols=120 Identities=13% Similarity=0.124 Sum_probs=85.3
Q ss_pred HHHHHHhcCCHHHHHHHHH--------HHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--C-CCCH----
Q 026993 88 ALRELIRQGECAVAVHVFS--------TIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI--D-GGDG---- 151 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~--------~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~--g-~pd~---- 151 (229)
.+.-...+|+++.|++++. .+.+- +. |- +-.+++..|.+.+.-+-|-.++++-... . .+..
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~-P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~ 458 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHL-PG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALL 458 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC-hh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHH
Confidence 3444567899999999988 33222 33 54 4557888899988888888888764321 1 2222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREF 216 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~ 216 (229)
.+|.-...--.+.|+-++|..+++++.+..- +|.-+..-++.+|++. +.+.|..+-+.+
T Consensus 459 ~~~~~aa~f~lr~G~~~ea~s~leel~k~n~-----~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 459 SLMREAAEFKLRHGNEEEASSLLEELVKFNP-----NDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hHHHHHhHHHHhcCchHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3444555555688999999999999998653 8999999999999975 677777766543
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.20 E-value=15 Score=29.06 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.++..=.+.++.+++..+.+.|+-- -+.+.+-++-..| +.+.|+.+||.++|.+..+.+ ....|..-+-++|-..
T Consensus 15 ~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 15 EVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHh
Confidence 3343344588899999999988753 1124555666666 458899999999999998764 2236777888888887
Q ss_pred CHHHHHHHH-HHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 166 SKESTVRIY-GLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 166 ~~~~A~~~f-~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
.-|-.-+.+ .++.+.|-. ||.+. |++.+.
T Consensus 91 l~Dp~Wr~~A~~~le~~~~----~~a~~---Lv~al~ 120 (153)
T TIGR02561 91 KGDAEWHVHADEVLARDAD----ADAVA---LVRALL 120 (153)
T ss_pred cCChHHHHHHHHHHHhCCC----HhHHH---HHHHHh
Confidence 777777777 456666643 44443 555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.96 E-value=8.5 Score=37.41 Aligned_cols=113 Identities=13% Similarity=0.072 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCCH--HHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE------YQQQDLGLLTDLINTLAKNGLTGE---VDRLIGELEEIDGGDG--RGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~------~~~pd~~ty~~LI~~~~k~g~~~~---A~~lf~~M~~~g~pd~--~tyn 155 (229)
..+.-|++.+++++|-+.+..+..+ .++.+...|+-+-+-.+++-+.-. ...++..+..+ .+|. ..|+
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r-ftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR-FTDQLGFLWC 252 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc-CcHHHHHHHH
Confidence 4577788899999999888877532 122566778877777776644333 34444444322 5664 7999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCH
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEE 206 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~ 206 (229)
+|-+-|.+.|++|+|.++|++-...- -.+.-|+.+.++|.....-
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v------~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTV------MTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh------eehhhHHHHHHHHHHHHHH
Confidence 99999999999999999998866542 3455677888888765443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.37 E-value=20 Score=35.17 Aligned_cols=28 Identities=18% Similarity=0.006 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.||.+-.++.+.|+-.+|...++|.-+.
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 4555555555555555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.10 E-value=15 Score=35.07 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHcCCCCCCCCCHHHH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAGSKESTVRIYGL-MKRSGVGCSWKVDEYVG- 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~-M~~~g~~~~~~Pd~~Ty- 193 (229)
.+|...|+.--|..-++-|+.+|.+..+.+ .+ ++..++++|.-||. ++.+-|+++|+- |+.- +|+-.|
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-------~d~p~yv 438 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-------GDSPEYV 438 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-------CCChHHH
Confidence 467788888888888999999999998888 55 88899999998875 578899999974 4443 454444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..-++-+...++-.-|+.+|+..-.-
T Consensus 439 ~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 439 LKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 56788888999888899999866543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=84.95 E-value=14 Score=29.63 Aligned_cols=87 Identities=9% Similarity=-0.052 Sum_probs=55.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
--.+-.+|++++|..+|..+... . | |.--|..|=.++=..|++++|..+|..--.-+ .|-.+-| +=..|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~--agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF--TGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch--HHHHHHHhC
Confidence 34456788999999998887553 2 2 22234444455555688888888887543322 2333222 234577888
Q ss_pred CHHHHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKR 179 (229)
Q Consensus 166 ~~~~A~~~f~~M~~ 179 (229)
+.+.|.+.|..-.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88899888877665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.73 E-value=13 Score=32.05 Aligned_cols=90 Identities=12% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTD---LINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~---LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~~~ 163 (229)
-.+.+.|++..|.+.|....+.|. -+.++-|+ |-..+...|++++|-.+|..+.++- .|-. .+.=-|-....+
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP-~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYP-NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 346688999999999999888754 33333333 6678999999999999999987653 2221 344445556678
Q ss_pred cCCHHHHHHHHHHHHHc
Q 026993 164 AGSKESTVRIYGLMKRS 180 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~ 180 (229)
.|+.|+|..+|.+..+.
T Consensus 228 l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 228 LGNTDEACATLQQVIKR 244 (262)
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999998875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=84.64 E-value=21 Score=30.67 Aligned_cols=58 Identities=12% Similarity=0.053 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID------GGDGR--GLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g------~pd~~--tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
+..+...+.+.|++++|.++|++....- +.++. .++.+| .+...|+...|.+.|++..
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 4444455666666666666666554321 11111 122222 3444455666666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.64 E-value=14 Score=32.55 Aligned_cols=88 Identities=18% Similarity=-0.007 Sum_probs=70.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCC
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~ 205 (229)
+.+.+++++|...+.+-.+-..-|.+-|..==.+|++.|.++.|++=-+.-+.-. | -.-+|..|=-+|...|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD------p~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID------PHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC------hHHHHHHHHHHHHHHccCc
Confidence 5678999999999999776542367888888899999999999998665544432 3 34689999999999999
Q ss_pred HHHHHHHHHHhhhcC
Q 026993 206 EELANEVEREFCWVP 220 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~ 220 (229)
+++|.+-|+..-++-
T Consensus 165 ~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 165 YEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHhhhccC
Confidence 999999987655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.49 E-value=50 Score=34.20 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..|-.+-.+.|.+.+|.+-|-+-. |...|--+|....+.|.+|+-++.+ .|.++... ||.+- +.|
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyikad-----Dps~y~eVi~~a~~~~~~edLv~yL-~MaRkk~~---E~~id--~eL 1172 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD-----DPSNYLEVIDVASRTGKYEDLVKYL-LMARKKVR---EPYID--SEL 1172 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhcC-----CcHHHHHHHHHHHhcCcHHHHHHHH-HHHHHhhc---Cccch--HHH
Confidence 3457777788888888888877664432 6678888999999999999888866 45444433 36554 458
Q ss_pred HHHHHhcCCHHHHHHHH
Q 026993 197 SKGLRRFGEEELANEVE 213 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~ 213 (229)
|-+|++.+++.+-++..
T Consensus 1173 i~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred HHHHHHhchHHHHHHHh
Confidence 88888888876655443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=84.31 E-value=2.8 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
+|..+-..|.+.|++++|.++|++..+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46677788888888888888888887753
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.65 E-value=5.5 Score=35.48 Aligned_cols=97 Identities=9% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
...+-..+|..-....++++|...+.++...- .|+...| +.|.- |-.=+.++++-+...=+.-|+- ||-+
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF----~dqf 136 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIF----PDQF 136 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccc----cchh
Confidence 44455566666666789999999998887532 3332222 23333 3344778999999988999997 9999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
|++.||+.|.+.|+..+|..|.-+|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888876654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.57 E-value=8.2 Score=33.66 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+++.++..+...|+.|.+.+.+++...... -|.--|..|+.+|.+.|+...|...++.+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-----~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-----YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5888999999999999999999999998765 59999999999999999999999999988773
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=82.49 E-value=15 Score=29.35 Aligned_cols=54 Identities=9% Similarity=0.145 Sum_probs=43.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 126 TLAKNGLTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.-.+.++.+++..+++.|.--. .|...++-..|. .+.|++++|.++|+++.+.+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH--IVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHhccC
Confidence 3456779999999999997543 455667777775 89999999999999987654
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.40 E-value=6.8 Score=31.65 Aligned_cols=34 Identities=18% Similarity=0.022 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
||..+|..++..+...|+.++|+++.++++.+.|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 7888888788888888888888888887777655
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.17 E-value=5.9 Score=38.75 Aligned_cols=80 Identities=19% Similarity=0.052 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
.+-..+-+.|-+.+|..+|+... .|--.|..|+..|+.++|-++-..-.++ . ||..-|..|.+...
T Consensus 403 ~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~----~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--D----PDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--C----CcchhHHHhhhhcc
Confidence 45577899999999999999886 5889999999999999999988777762 3 99999999999987
Q ss_pred hcCCHHHHHHHHHH
Q 026993 202 RFGEEELANEVERE 215 (229)
Q Consensus 202 ~~g~~~~A~~v~~e 215 (229)
.-.-+|.|-++++.
T Consensus 469 d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 469 DPSLYEKAWELSNY 482 (777)
T ss_pred ChHHHHHHHHHhhh
Confidence 77777778777763
|
|
| >COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.95 E-value=11 Score=31.14 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCHHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGDGRGLSRVVR-AVVEAGS--KESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd~~tyn~lI~-~~~~~g~--~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
++-+....-.....|++++|..-++++.+.= +.-.-.|+-+.. |||..+. +-+|.-+|.-....+.+ .|+.
T Consensus 29 i~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~p---s~~E 105 (204)
T COG2178 29 IVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLP---SPEE 105 (204)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC---CHHH
Confidence 3345555556667788888888887765421 123457888877 8888884 45777777666655443 1331
Q ss_pred --HHHHHHHHHH--------------HhcCCHHHHHHHHHHhhh
Q 026993 191 --YVGKVLSKGL--------------RRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 --~Ty~~Li~~~--------------~~~g~~~~A~~v~~e~~~ 218 (229)
+.+-.-|.|+ .+.|+++.|++.++=|.+
T Consensus 106 L~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 106 LGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444456665 456888998777765444
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.84 E-value=20 Score=31.34 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=72.9
Q ss_pred HhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 93 IRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINT-----LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~-----~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-+.|+.+.|...|+.+.+. -+ .|-.+.+.++.. |.-.+++-+|.+.|++....+..|.+.-|.=--...-.|+
T Consensus 223 MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~ 301 (366)
T KOG2796|consen 223 MQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK 301 (366)
T ss_pred HhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH
Confidence 3579999999999988776 55 677777777753 4456788899999999988764455555543333344678
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLR 201 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~ 201 (229)
..+|+...+.|++.- |...+-++++-.++
T Consensus 302 l~DAiK~~e~~~~~~------P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 302 LKDALKQLEAMVQQD------PRHYLHESVLFNLT 330 (366)
T ss_pred HHHHHHHHHHHhccC------CccchhhhHHHHHH
Confidence 999999999998753 66666665554444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.43 E-value=3.8 Score=24.66 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 026993 192 VGKVLSKGLRRFGEEELANEVEREFCWVPGGSL 224 (229)
Q Consensus 192 Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~~ 224 (229)
++..+-..+...|++++|++++++.-+..|.+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566788999999999999999999888766653
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.89 E-value=4.4 Score=23.34 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
.++|.|-..|...|++++|.+++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 356666666667777777766666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.83 E-value=41 Score=31.30 Aligned_cols=57 Identities=7% Similarity=-0.106 Sum_probs=41.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...|+.++|.=-|..-+...- -+.-.|.-|+.+|...|++.||.-.-++..+..+.
T Consensus 344 L~~~~R~~~A~IaFR~Aq~Lap-----~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~ 400 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQMLAP-----YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQN 400 (564)
T ss_pred HHhccchHHHHHHHHHHHhcch-----hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhc
Confidence 4466778888887877665431 37788889999999999998887777776665443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=80.79 E-value=28 Score=28.00 Aligned_cols=96 Identities=15% Similarity=-0.002 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCCCCCCH-
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGSKESTVRIYGLMK---RSGVGCSWKVDE- 190 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~~~~A~~~f~~M~---~~g~~~~~~Pd~- 190 (229)
..|..+-+.|++.|+.++|.+.|.++.+.. .+. ...+=.+|....-.|++..+.....+.. +.|.. ++.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d----~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD----WERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch----HHHH
Confidence 357778888888999999999888887765 433 3466677888888888888877766553 33322 222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 191 ---YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 191 ---~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-+|..|-. ...|++.+|-+.|-+.--.
T Consensus 113 nrlk~~~gL~~--l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 113 NRLKVYEGLAN--LAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHH--HHhchHHHHHHHHHccCcC
Confidence 23333322 3357888888888766443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.71 E-value=4.9 Score=23.10 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
.+++.|-..|...|++++|..++.+..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788899999999999999999988653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.25 E-value=24 Score=33.42 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=78.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-RGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-~tyn~lI~~~~~~g~~~~A 170 (229)
.+..|+++.|+..|-.-..--. +|.+.|..=+.+|.+.|++++|.+=-.+-.+. .||. ..|+-.=.++.-.|++++|
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL-NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred hcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc-CCchhhHHHHhHHHHHhcccHHHH
Confidence 4567899999999976544334 79999999999999999999997654443322 6774 7899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+.-|.+=.+..- -|..-++-|.++.
T Consensus 90 ~~ay~~GL~~d~-----~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 90 ILAYSEGLEKDP-----SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHhhcCC-----chHHHHHhHHHhh
Confidence 999988766432 3556666666655
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.19 E-value=0.23 Score=38.02 Aligned_cols=87 Identities=10% Similarity=0.050 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
.+|+.|-+.+.++.+...++.+...+ .-+....|.++..|++.+..++..++++ ... + +-...+++-|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~~-------~-yd~~~~~~~c 80 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TSN-------N-YDLDKALRLC 80 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SSS-------S-S-CTHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---ccc-------c-cCHHHHHHHH
Confidence 45666667777777777777777666 5567777888888888777777777665 111 1 3334566677
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|.+++|..++..++.+
T Consensus 81 ~~~~l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 81 EKHGLYEEAVYLYSKLGNH 99 (143)
T ss_dssp HTTTSHHHHHHHHHCCTTH
T ss_pred HhcchHHHHHHHHHHcccH
Confidence 7777777777777766654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.91 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.49 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.48 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.24 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.06 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.96 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.91 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.89 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.87 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.87 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.8 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.77 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.76 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.75 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 98.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 98.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.65 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.59 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.59 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.58 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.56 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.54 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.54 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.53 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.45 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.44 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.43 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.41 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.38 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.37 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.37 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.31 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.3 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.3 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.29 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.25 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.25 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.21 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.2 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.18 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.17 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.17 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.16 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.11 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.1 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.09 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.08 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.08 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.08 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.08 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.07 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.07 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 98.05 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.05 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.04 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.03 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.02 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.01 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.01 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.99 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 97.96 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.95 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 97.93 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.92 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.91 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.9 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.89 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.89 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 97.86 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.84 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.83 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.83 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.82 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.8 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 97.77 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.76 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.75 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 97.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 97.71 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.71 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.67 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.66 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.65 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.64 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.64 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.61 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.5 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.48 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 97.45 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.43 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.42 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.4 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 97.37 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.35 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.33 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 97.33 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.31 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.15 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.14 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.13 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.08 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.05 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.02 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.98 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 96.94 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.93 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 96.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.89 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 96.89 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 96.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.71 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.7 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 96.67 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 96.65 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 96.64 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.55 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.46 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 96.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.45 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.4 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.33 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.25 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.95 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.94 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.91 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 95.7 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 95.59 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 95.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 95.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 95.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.31 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.17 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 94.65 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 93.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 93.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 93.58 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 93.55 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.49 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 93.37 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 92.93 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 92.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 92.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.06 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 91.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 90.88 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 88.59 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 87.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 87.56 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 87.26 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 86.97 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 84.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 84.48 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 82.43 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 81.4 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-28 Score=227.28 Aligned_cols=151 Identities=10% Similarity=0.005 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchHHhhhhhhhcHHHHHHHHHhcC---------CHHHHHHHHHHHHHH-cCCCCHHHHH
Q 026993 52 TEAIQAVQFLKRAHKQNPQNPTYPSLSRLIKHDLLAALRELIRQG---------ECAVAVHVFSTIQRE-YQQQDLGLLT 121 (229)
Q Consensus 52 ~ea~~~~~~l~~~~~~~~~~~~~~~~~~l~~~d~~~vl~~l~~~g---------~~~~A~~vf~~m~~~-~~~pd~~ty~ 121 (229)
.+|..+++.|++. +..|+.+.+ .++|.+|++.+ .++.|.++|++|.+. +. ||.+|||
T Consensus 43 ~~A~~lf~~M~~~-Gv~pd~~ty-----------n~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~-Pd~~tyn 109 (501)
T 4g26_A 43 LEALRLYDEARRN-GVQLSQYHY-----------NVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV-PNEATFT 109 (501)
T ss_dssp HHHHHHHHHHHHH-TCCCCHHHH-----------HHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC-CCHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCCHhHH-----------HHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC-CCHHHHH
Confidence 5777777777763 455552221 24566666554 378899999999887 88 9999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+||++|++.|++++|.++|++|.+.| .||.+|||+||.+||+.|++++|.++|++|.+.|+. ||.+||++||++|
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~----Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV----PEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999997 9999999999999
Q ss_pred HhcCCHHHHHHHHHHhhhc
Q 026993 201 RRFGEEELANEVEREFCWV 219 (229)
Q Consensus 201 ~~~g~~~~A~~v~~e~~~~ 219 (229)
++.|++++|.+++++|++.
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999985
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=217.06 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=123.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHhhhCC-CCCHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGL---------TGEVDRLIGELEEID-GGDGRGLS 155 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~---------~~~A~~lf~~M~~~g-~pd~~tyn 155 (229)
.+|+.|+|.|++++|+++|++|++. +. ||.+|||+||++|++.+. +++|.++|++|.+.| .||.+|||
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~-pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQ-LSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCC-CCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5789999999999999999999988 88 999999999999998775 789999999999999 99999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+||++||+.|++++|.++|++|.+.|+. ||.+|||+||++|++.|++++|.++|++|.+.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~----Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQ----PRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----CccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999997 99999999999999999999999999999886
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-25 Score=216.39 Aligned_cols=123 Identities=14% Similarity=0.137 Sum_probs=111.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---H-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQR---E-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVR 159 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~---~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~ 159 (229)
+.++|++||+.|++++|.++|++|.+ . +. ||++|||+||+||||.|++++|.++|++|.+.| .||++|||+||+
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~-PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL-LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 45789999999999999999999864 2 77 999999999999999999999999999999999 999999999999
Q ss_pred HHHHcCCH-HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 026993 160 AVVEAGSK-ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV 212 (229)
Q Consensus 160 ~~~~~g~~-~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v 212 (229)
|||+.|+. ++|.++|++|.+.|+. ||.+||++++++..+.+-++..+++
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG~~----PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEGLK----LQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHTCC----SHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCC----CChhhcccccChhhHHHHHHHHHHh
Confidence 99999984 7899999999999997 9999999999988876655444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=199.63 Aligned_cols=100 Identities=9% Similarity=-0.051 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEE---ID-GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~---~g-~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
-..|||+||++|||+|++++|.++|++|.+ +| .||++|||+||+|||+.|++++|.++|++|.+.|+. ||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~----PDvv 201 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT----PDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----CCHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CcHH
Confidence 357999999999999999999999988764 57 999999999999999999999999999999999997 9999
Q ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHhhhc
Q 026993 192 VGKVLSKGLRRFGE-EELANEVEREFCWV 219 (229)
Q Consensus 192 Ty~~Li~~~~~~g~-~~~A~~v~~e~~~~ 219 (229)
|||+||+|||+.|+ .++|.++|+||.+.
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 99999999999998 57899999999875
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=118.31 Aligned_cols=127 Identities=9% Similarity=-0.132 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+++|+.+.+... .+..+|+.++.+|++.|++++|.++|++|.+.+..+..+|+.++.+|++.|+
T Consensus 378 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 378 AVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC
Confidence 345677788888888888888765433 4677888888888888888888888888876654477888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.++|++|.+..- .|..+|+.++..|.+.|++++|.++|+++.+.
T Consensus 457 ~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 457 ILLANEYLQSSYALFQ-----YDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888877643 56788888888888888888888888887665
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-12 Score=117.40 Aligned_cols=129 Identities=10% Similarity=-0.028 Sum_probs=84.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+++|+.+.+... .|..+|+.++.+|.+.|++++|.++|++|.+....|..+|+.++..|++.|+
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 445566667777777777776654333 4566677777777777777777777777665443356667777777777777
Q ss_pred HHHHHHHHHHHHHc----CCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 167 KESTVRIYGLMKRS----GVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 167 ~~~A~~~f~~M~~~----g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+++|.++|++|.+. |.. |+ ..+|..+..+|.+.|++++|.++++++.+..
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~----p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSN----EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhccccc----hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 77777777776554 544 66 5667777777777777777777776665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-09 Score=78.42 Aligned_cols=128 Identities=13% Similarity=0.051 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+.+|+.+.+... .+...|..+...+.+.|++++|..+|+++.+.+..+...|..+...|.+.|++
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 44557788999999999999876544 57788999999999999999999999998876544678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.++|+++.+..- .+..++..+...+.+.|+.++|.+.++++.+..+
T Consensus 86 ~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 86 DEAIEYYQKALELDP-----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999988653 4678889999999999999999999999877654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=8e-09 Score=89.67 Aligned_cols=128 Identities=16% Similarity=0.083 Sum_probs=96.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|++.|+.+.+... .+..+|+.+...|.+.|++++|...|+++.+....+..+|+.+...|.+.|++
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 44556778888888888887765322 34667888888888888888888888887765444677888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|+++.+.. + .+..+|..+...+.+.|++++|.+.++++-+..|
T Consensus 322 ~~A~~~~~~al~~~-p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 322 EEAVRLYRKALEVF-P----EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHHHTTSC-T----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcC-C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 88888888887643 2 4567788888888888888888888887776544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.8e-08 Score=73.61 Aligned_cols=130 Identities=11% Similarity=0.015 Sum_probs=111.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|...|+...+... .+...|..+...|.+.|++++|.+.|++..+....+...|..+...|.+.|+
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 125 (186)
T 3as5_A 47 HLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR 125 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence 344567789999999999999876544 5778899999999999999999999999877654467899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- .+..++..+...+.+.|+.++|.+.+++..+..+.
T Consensus 126 ~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 126 FDEAIDSFKIALGLRP-----NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999987753 57789999999999999999999999987765433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.7e-08 Score=84.20 Aligned_cols=126 Identities=16% Similarity=-0.006 Sum_probs=102.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|+..|....+... -+..+|+.+...|.+.|++++|...|+++.+.+.-+..+|+.+...|.+.|++++|
T Consensus 212 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 290 (388)
T 1w3b_A 212 VLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666666544322 35788999999999999999999999999876533567899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+.|+++.+.. + .+..+|..+...+.+.|++++|.+.++++-+..+.
T Consensus 291 ~~~~~~al~~~-p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 291 EDCYNTALRLC-P----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHC-T----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhhC-c----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999998764 3 68889999999999999999999999998876554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.9e-08 Score=87.27 Aligned_cols=128 Identities=10% Similarity=0.017 Sum_probs=108.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|+.+.+... .+..+|+.+..+|.+.|++++|.+.|+++.+....+..+|+.+...|.+.|+++
T Consensus 150 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 228 (450)
T 2y4t_A 150 ALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHE 228 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3447789999999999999976555 578899999999999999999999999998655447899999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVL------------SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L------------i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|.+.|+++.+..- .+...+..+ ...+.+.|++++|.++++++-+..+.
T Consensus 229 ~A~~~~~~~~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~ 289 (450)
T 2y4t_A 229 LSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 289 (450)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 99999999987542 344445555 78999999999999999998876554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.3e-07 Score=74.49 Aligned_cols=129 Identities=7% Similarity=-0.210 Sum_probs=108.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCC-CCC-HHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-GLTGEVDRLIGELEEID-GGD-GRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-g~~~~A~~lf~~M~~~g-~pd-~~tyn~lI~~~~~ 163 (229)
.+...+.+.|++++|++.|+...+... .+..+|..+...|.+. |++++|...|+++.+.+ .|+ ...|..+...|.+
T Consensus 47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 125 (225)
T 2vq2_A 47 VRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence 345667789999999999998876544 5678899999999999 99999999999988744 454 5789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|++++|.+.|.++.+..- -+...+..+...+.+.|+.++|.+++++..+..+
T Consensus 126 ~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 178 (225)
T 2vq2_A 126 QGQFGLAEAYLKRSLAAQP-----QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178 (225)
T ss_dssp TTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCC-----CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987653 4578889999999999999999999998877644
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.93 E-value=6.4e-08 Score=85.01 Aligned_cols=129 Identities=11% Similarity=-0.023 Sum_probs=109.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+.+|+.+.+... .+..+|..+..+|.+.|++++|...|+++.+.+..+..+|+.+...|.+.|+
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 455678899999999999999976554 5788999999999999999999999999987653468899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHH------------HHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDE----YVGKVLSKG------------LRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~Li~~------------~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|+++.+.. |+. .++..++.. +.+.|++++|.++++++.+..+.
T Consensus 110 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999998754 544 566666554 89999999999999998776544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-07 Score=75.98 Aligned_cols=128 Identities=11% Similarity=-0.044 Sum_probs=88.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC-CHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GG-DGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~p-d~~tyn~lI~~~~~~g 165 (229)
+...+.+.|++++|++.|+...+... .+...|..+...|.+.|++++|.+.|++..+.+ .| +...|..+...|.+.|
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcC
Confidence 34456677778888877777665433 456677777777777788888888777776633 34 3466777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.|.+..+..- .+..++..+...+...|+.++|.+++++..+..+
T Consensus 156 ~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNR-----NQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp CHHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777766542 3566777777777777777777777777665443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.9e-07 Score=73.59 Aligned_cols=133 Identities=12% Similarity=-0.076 Sum_probs=107.7
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 87 AALRELIRQ-GECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~-g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
.+...+.+. |++++|+..|+.+.+. ....+...|..+...|.+.|++++|...|+++.+...-+...|..+...|.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 345567788 9999999999998762 12023678899999999999999999999998765533578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|++++|.+.|++..+..-. .+...+..+...+...|+.+.|..+++.+.+..+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEV----LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCC----CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC
Confidence 9999999999998875421 366778888888899999999999999987665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.4e-07 Score=75.59 Aligned_cols=129 Identities=11% Similarity=-0.034 Sum_probs=93.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|++.|+...+... .+...|..+...|.+.|++++|...|++..+....+...|..+...|.+.|++
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 34455667788888888877765444 46667777777888888888888888777654433566777777888888888
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|.+..+..- .+..+|..+...+.+.|+.++|.+.+++..+..+.
T Consensus 176 ~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-----GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 888888877776542 45667777888888888888888888777665544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=8.4e-08 Score=73.10 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=109.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+.+.+... .+...|..+...|.+.|++++|...|++..+....+...|..+...|...|++
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 14 KGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 34456788999999999987754333 57788999999999999999999999998765534678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|++..+..- .+...+..+...+.+.|++++|.+++++..+..+.
T Consensus 93 ~~A~~~~~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 142 (186)
T 3as5_A 93 DLAVPLLIKVAEANP-----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142 (186)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCc-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc
Confidence 999999999987653 57788899999999999999999999988776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-07 Score=74.21 Aligned_cols=130 Identities=9% Similarity=-0.076 Sum_probs=111.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+...+.+.|++++|+..|+...+... .+...|..+...|.+.|++++|.+.|++..+....+...|..+...|.+.|+
T Consensus 62 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 140 (243)
T 2q7f_A 62 NFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQ 140 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence 345567789999999999999876544 5788899999999999999999999999887654467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- .+...+..+...+.+.|++++|.+++++..+..+.
T Consensus 141 ~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 141 PKLALPYLQRAVELNE-----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCC-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999987653 47788999999999999999999999988776443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-07 Score=75.98 Aligned_cols=131 Identities=8% Similarity=0.000 Sum_probs=110.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+...+.+.|++++|++.|+...+. ....+...|..+...|.+.|++++|...|++..+....+...|..+...|.+.|+
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 190 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE 190 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence 455677899999999999998662 2203567889999999999999999999999876553357899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.++|.+.|++..+..- .+...+..+...+.+.|+.++|.++++++.+..+.+
T Consensus 191 ~~~A~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 191 YVPARQYYDLFAQGGG-----QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHHTTSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHhCc-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 9999999999987543 577788999999999999999999999998876554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-07 Score=77.92 Aligned_cols=128 Identities=11% Similarity=0.010 Sum_probs=82.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGL---LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~t---y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
....+.+.|++++|.+.|+.+.+. . ||... ...++..+...|++++|..+|+++.+....+...|+.+-..|.+.
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~-~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ-D-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-C-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 345566777777777777777553 3 44321 123334444557777777777777665433567777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHhhhcCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEEL-ANEVEREFCWVPGG 222 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~-A~~v~~e~~~~~~~ 222 (229)
|++++|.+.|++..+..- -|..++.-++..+...|+.++ +.++++.+.+..|.
T Consensus 214 g~~~eA~~~l~~al~~~p-----~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDS-----GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp TCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 777777777777766532 255567777777777777765 46677766665443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=5.2e-07 Score=73.57 Aligned_cols=129 Identities=12% Similarity=-0.070 Sum_probs=106.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+-..+.+.|++++|+..|+...+... .+..+|..+-..|.+.|++++|...|++..+....+..+|..+-..|.+.|+
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~ 126 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR 126 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhcc
Confidence 345567789999999999999876544 5688999999999999999999999999887553367899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|+++.+.. |+...+...+..+...|+.++|.+.+++..+..+.
T Consensus 127 ~~~A~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (275)
T 1xnf_A 127 DKLAQDDLLAFYQDD------PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 176 (275)
T ss_dssp HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 999999999998754 55555556666677889999999999776665433
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-06 Score=72.43 Aligned_cols=126 Identities=9% Similarity=-0.119 Sum_probs=94.0
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+-..+...| ++++|++.|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 344556677 78888888877754333 3566788888888888888888888888776542245667778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.+.|++..+..- .+..++..+...+...|++++|.+.+++..+.
T Consensus 175 ~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-----EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHHHHHTTCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8888888888876542 46677888888888888888888888877664
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.75 E-value=7e-07 Score=76.49 Aligned_cols=57 Identities=7% Similarity=-0.031 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI 146 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~ 146 (229)
-..+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|...|+++.+.
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 162 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNTSHQQDACEALKNWIKQ 162 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 3445556666666666666544322 34556666666666666666666666665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.73 E-value=4.6e-07 Score=75.51 Aligned_cols=125 Identities=9% Similarity=0.011 Sum_probs=108.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
+...|++++|+..|+...+... .+..++..+...|.+.|++++|...|++..+....+..+|..+...|.+.|++++|.
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 5567788999999999876554 578899999999999999999999999987655335789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+.|++..+..- .+..+|..+...+.+.|++++|.+.+++..+..+.
T Consensus 227 ~~~~~a~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 227 DAYNRALDINP-----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 99999987653 46788999999999999999999999988776443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-07 Score=80.50 Aligned_cols=126 Identities=10% Similarity=-0.068 Sum_probs=106.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
..+.+.|++++|+..|+.+.+... ..+..+|+.+...|.+.|++++|...|++..+....+..+|+.+...|.+.|+++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 355667899999999999877533 1268899999999999999999999999987765346889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+|.+.|++..+..- -+..+|..+...+.+.|++++|.+.+++.-+..
T Consensus 265 ~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 265 EAVEAYTRALEIQP-----GFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-----CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999988642 458889999999999999999999999877653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-07 Score=77.85 Aligned_cols=128 Identities=13% Similarity=-0.037 Sum_probs=108.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+..+.+.|++++|+..|+.+.+... .++..+|..+...|.+.|++++|...|++..+....+..+|+.+...|.+.|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 3444577899999999999876532 126889999999999999999999999998765433578999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++|.+.|++..+..- .+..+|..+...+.+.|++++|.+.+++..+..+
T Consensus 268 ~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 268 EEAVAAYRRALELQP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999999999987642 4678999999999999999999999998776533
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-06 Score=73.21 Aligned_cols=126 Identities=10% Similarity=0.000 Sum_probs=71.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C----------------
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-G-G---------------- 149 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p---------------- 149 (229)
+-..+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|.+.|+++.+.. . +
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 182 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhccc
Confidence 34445566777777777766654433 356666777777777777777777777666544 1 1
Q ss_pred ---------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 150 ---------------------------------DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 150 ---------------------------------d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
+..+|+.+...|.+.|++++|.+.|++..+..- .+..+|..+
T Consensus 183 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~l 257 (368)
T 1fch_A 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKL 257 (368)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CCHHHHHHH
Confidence 234455555555555555555555555554421 234555555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhc
Q 026993 197 SKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
...+.+.|++++|.+.+++.-+.
T Consensus 258 ~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 258 GATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55555555555555555554443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-06 Score=73.23 Aligned_cols=126 Identities=12% Similarity=-0.039 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+...+.+.|++++|+..|+...+... .+..+|..+...|.+.|++++|...|++..+....+..+|..+...|.+.|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 44567789999999999999876544 56788999999999999999999999998765433678999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKV-----------DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~P-----------d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++|.+.|++..+..-. . +..+|..+...+.+.|+.++|.+++++.-+
T Consensus 257 ~~A~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVG----GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHTT----SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHHhCCc----cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 9999999998765321 1 478899999999999999999999875433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-06 Score=60.29 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=63.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+.+.|+++.|++.|+.+.+... .+..+|..+...|.+.|++++|...|+++.+....+..+|..+...|.+.|+++
T Consensus 16 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 94 (125)
T 1na0_A 16 GNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYD 94 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH
Confidence 3445667777777777777665433 456667777777777777777777777776544335667777777777777777
Q ss_pred HHHHHHHHHHHcC
Q 026993 169 STVRIYGLMKRSG 181 (229)
Q Consensus 169 ~A~~~f~~M~~~g 181 (229)
+|.+.|+++.+..
T Consensus 95 ~A~~~~~~~~~~~ 107 (125)
T 1na0_A 95 EAIEYYQKALELD 107 (125)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=73.05 Aligned_cols=131 Identities=6% Similarity=-0.043 Sum_probs=108.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.....+.+.|++++|+.+|+.+.+... .+...|..+-..|.+.| ++++|...|++..+....+...|..+...|...|
T Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 139 (330)
T 3hym_B 61 VHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVES 139 (330)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcc
Confidence 456777888999999999998876544 46778888999999999 9999999999987665335678999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.+.|++..+..- .+..++..+...+...|++++|.+.+++.-+..+.+
T Consensus 140 ~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 192 (330)
T 3hym_B 140 EHDQAMAAYFTAAQLMK-----GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192 (330)
T ss_dssp CHHHHHHHHHHHHHHTT-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC
Confidence 99999999999987653 345667779999999999999999999888775543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.3e-06 Score=62.11 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..+...|.+.|++++|.++|+++.+....+..+|..+...|.+.|++++|..+|+++.+..- .+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l 83 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----ccHHHHHHH
Confidence 567888899999999999999999998765534678999999999999999999999999988653 577889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
...+...|++++|.+.++++.+..+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999988776554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=74.73 Aligned_cols=122 Identities=12% Similarity=0.027 Sum_probs=100.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHH---HHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL---SRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ty---n~lI~~~~~~g~ 166 (229)
..+.+.|++++|++.|+. . .+...+..+...|.+.|++++|.+.|+++.+.. ||...+ ...+..+...|+
T Consensus 109 ~~~~~~g~~~~Al~~l~~-----~-~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 109 SIYFYDQNPDAALRTLHQ-----G-DSLECMAMTVQILLKLDRLDLARKELKKMQDQD-EDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHHTTCHHHHHHHHTT-----C-CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHHCCCHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhCchH
Confidence 567899999999999876 3 788899999999999999999999999998764 553211 223344445689
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+++|..+|+++.+. .+ .|...|+.+-..+.+.|++++|.+.+++.-+..|..
T Consensus 182 ~~eA~~~~~~~l~~-~p----~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 182 LQDAYYIFQEMADK-CS----PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHHHHHHHHHHH-SC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHh-CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999987 33 688899999999999999999999999877765543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-06 Score=63.14 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
.|..+...|.+.|++++|..+|+++.+.+..+...|..+...+...|++++|.++|+++...+- .+...+..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~ 77 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC-----CchHHHHHHHH
Confidence 5778889999999999999999998876534678899999999999999999999999988753 57788899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 199 GLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+...|++++|.++++++.+..+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~ 101 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPR 101 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC
Confidence 999999999999999988776543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-06 Score=69.66 Aligned_cols=127 Identities=9% Similarity=-0.124 Sum_probs=104.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH-------------------------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE-------------------------YQQQ-DLGLLTDLINTLAKNGLTGEVDRLIG 141 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~-------------------------~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~ 141 (229)
+-..+.+.|++++|+..|+...+. .. | +...|..+-..|.+.|++++|...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 345566778888888888777652 12 3 35678888899999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 142 ELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 142 ~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+..+....+..+|..+-..|.+.|++++|.+.|++..+..- .+..+|..+-..+.+.|+.++|.+.+++..+..
T Consensus 164 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 164 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 98776534678999999999999999999999999988653 467889999999999999999999999876654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-06 Score=68.49 Aligned_cols=130 Identities=10% Similarity=-0.023 Sum_probs=108.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH---cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------------
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE---YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-------------- 145 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~---~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-------------- 145 (229)
.+-..+.+.|++++|+..|....+. .. ++ ..+|..+-..|.+.|++++|...|++..+
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 121 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREMR-ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNA 121 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCcccc-cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHH
Confidence 3445678899999999999998664 22 23 57899999999999999999999999876
Q ss_pred ------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 146 ------------IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 146 ------------~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
...-+...|..+-..|.+.|++++|.+.|++..+..- .+..+|..+...+.+.|++++|.+.+
T Consensus 122 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 122 EKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-----EDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 2212356888999999999999999999999988653 57888999999999999999999999
Q ss_pred HHhhhcCCC
Q 026993 214 REFCWVPGG 222 (229)
Q Consensus 214 ~e~~~~~~~ 222 (229)
++.-+..+.
T Consensus 197 ~~al~~~~~ 205 (258)
T 3uq3_A 197 NKAIEKDPN 205 (258)
T ss_dssp HHHHHHCTT
T ss_pred HHHHHhCHH
Confidence 988776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.60 E-value=9.2e-06 Score=62.73 Aligned_cols=128 Identities=5% Similarity=-0.143 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+-..+.+.|+++.|+..+........ -+...+..+-..+.+.++.++|...+.+..+...-+...|..+-..|.+.|+
T Consensus 44 ~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 44 KLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCC
Confidence 344567788999999988888766544 4566777788888899999999999988766543357788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+++|++.|++..+..- -+..+|..+-..+.+.|+.++|.+.|++.-+..
T Consensus 123 ~~~A~~~~~~~l~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 123 HDKAIEAYEKTISIKP-----GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHhcc-----hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 9999999999887653 467788889999999999999999998776553
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=5.7e-07 Score=73.30 Aligned_cols=125 Identities=12% Similarity=0.005 Sum_probs=105.7
Q ss_pred hcCCHHHHHHHHHHHHHHc-C-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 94 RQGECAVAVHVFSTIQREY-Q-Q-QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~-~-~-pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
..|++++|+..|+.+.+.. . . .+..+|..+-..|.+.|++++|...|++..+....+..+|..+-..|.+.|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4578999999999987641 1 0 14678999999999999999999999998876534688999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+.|++..+..- .+..+|..+...+.+.|++++|.+.++++.+..+..
T Consensus 97 ~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 97 YEAFDSVLELDP-----TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCc-----cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 999999988642 467889999999999999999999999988765543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.3e-06 Score=62.82 Aligned_cols=125 Identities=10% Similarity=-0.012 Sum_probs=100.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|+++.|+..|....+... .+..+|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 34456789999999999998876544 57888999999999999999999999998765433678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVG--KVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty--~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++|.+.|++..+..- -+...+ -.+...+.+.|++++|.+.+.....
T Consensus 98 ~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 98 RAALRDYETVVKVKP-----HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999987653 244444 4444447888999999999886654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=69.86 Aligned_cols=124 Identities=9% Similarity=-0.000 Sum_probs=68.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--HHHHHHHHHHHHHcCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD--GRGLSRVVRAVVEAGS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd--~~tyn~lI~~~~~~g~ 166 (229)
..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.+ .|+ ..+|..+-..|.+.|+
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHccc
Confidence 344555666666666665544322 233355555556666666666666666655433 222 2345566666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|.+.|++..+..- -+..+|..+-..+...|++++|.+.+++.-+.
T Consensus 90 ~~~A~~~~~~a~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDT-----TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHhcCc-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 6666666666555432 23345555666666666666666666555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-05 Score=62.52 Aligned_cols=128 Identities=13% Similarity=0.084 Sum_probs=104.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|++.|+...+.-. -+...|..+-..|.+.|++++|...+........-+...|..+-..+...++++.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHH
Confidence 456788999999999988866433 3677888999999999999999999998876543356778888888899999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.+.+.+..+..- -+...+..+-..+.+.|++++|.+.+++.-+..|..
T Consensus 92 a~~~~~~a~~~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 92 AIDALQRAIALNT-----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCc-----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchh
Confidence 9999998877643 467788888999999999999999999887765543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.9e-06 Score=66.99 Aligned_cols=128 Identities=9% Similarity=-0.109 Sum_probs=104.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|+..|+.. .. |+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++++
T Consensus 14 ~~~~~~~~~~~A~~~~~~a---~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 89 (213)
T 1hh8_A 14 VLAADKKDWKGALDAFSAV---QD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 89 (213)
T ss_dssp HHHHHTTCHHHHHHHHHTS---SS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHH---cC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHH
Confidence 4567889999999998766 34 8889999999999999999999999999876543367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCC----------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 170 TVRIYGLMKRSGVGCS----------WKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~----------~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
|.+.|++..+..-... ..| +...|..+-..+.+.|+.++|.+.+++..+..+
T Consensus 90 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 90 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999987532100 001 226778899999999999999999998877755
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=6.6e-06 Score=66.31 Aligned_cols=124 Identities=10% Similarity=-0.038 Sum_probs=73.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhCCCCCHHHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-----------GLTGEVDRLIGELEEIDGGDGRGLSRVVR 159 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-----------g~~~~A~~lf~~M~~~g~pd~~tyn~lI~ 159 (229)
.+.+.|++++|+..|+...+... -+...|..+-..|.+. |++++|...|++..+...-+...|..+=.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 34556666666666666544322 2445566666666666 66666666666655432113456666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|...|++++|.+.|++..+.. . +...+..+-..+...|++++|.+.+++.-+..|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~-~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 182 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE-D-----TPEIRSALAELYLSMGRLDEALAQYAKALEQAP 182 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-C-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHcCChHHHHHHHHHHHhcc-c-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6666666666666666665544 3 444555566666666666666666666555433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-06 Score=68.73 Aligned_cols=92 Identities=10% Similarity=-0.022 Sum_probs=54.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
..+.+.|++++|.++|+++.+....+...|..+-..|.+.|++++|.+.|++..+..- .+..+|..+...+...|
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-----DNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-----CCHHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Confidence 4555666666666666665544333455666666666666666666666666655432 35556666666666666
Q ss_pred CHHHHHHHHHHhhhcCC
Q 026993 205 EEELANEVEREFCWVPG 221 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.+++..+..+
T Consensus 203 ~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQ 219 (359)
T ss_dssp CHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHhhCc
Confidence 66666666666555433
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-05 Score=67.21 Aligned_cols=128 Identities=9% Similarity=0.000 Sum_probs=106.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
...+.+.|++++|++.|+.+.+... .+...|..+-..|.+.|++++|...|++..+....+..+|..+...|.+.|+++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 205 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE 205 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 3567789999999999999877655 578889999999999999999999999998765446789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGK------------VLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~------------~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|.+.|++..+..- .+..++. .+...+.+.|++++|.+.+++..+..+.
T Consensus 206 ~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 206 LSLSEVRECLKLDQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHhhCc-----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 99999999987643 2333333 2356689999999999999988776544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.5e-06 Score=74.00 Aligned_cols=126 Identities=9% Similarity=-0.042 Sum_probs=87.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRVVRAVVE 163 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~lI~~~~~ 163 (229)
..+.+.|++++|+..|+.+.+... .+..+|..+...|.+.|++++|...|+++.+.. .++ ..+|..+...|.+
T Consensus 346 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 424 (514)
T 2gw1_A 346 CLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR 424 (514)
T ss_dssp HHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence 344566777777777777665433 355667777777788888888888877765543 222 3477777777777
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 164 ---AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 164 ---~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.|++++|.+.|++..+..- -+..++..+...+.+.|+.++|.+.+++..+..+
T Consensus 425 ~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 425 NPTVENFIEATNLLEKASKLDP-----RSEQAKIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhcCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 7888888888877776542 3566777778888888888888888877666544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-05 Score=56.63 Aligned_cols=112 Identities=13% Similarity=0.041 Sum_probs=89.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+...|+++.|+..|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 34556788999999999988876544 56788889999999999999999999988765433577888899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
++|.+.|++..+..- -+...+..+...+.+.|+
T Consensus 97 ~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 97 VEAVAYYKKALELDP-----DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCc-----cchHHHHHHHHHHHHHhc
Confidence 999999999887642 366677777777776665
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=64.48 Aligned_cols=126 Identities=18% Similarity=0.043 Sum_probs=105.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc----
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA---- 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~---- 164 (229)
-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 90 (217)
T 2pl2_A 12 GVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQA 90 (217)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Confidence 3457789999999999988765333 46778999999999999999999999998765422567899999999999
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 165 -------GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 165 -------g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
|++++|.+.|++..+..- -+...|..+-..+...|+.++|.+.+++.-+..
T Consensus 91 ~~~~~~~g~~~~A~~~~~~al~~~P-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 91 EDRERGKGYLEQALSVLKDAERVNP-----RYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhcccccCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999999999999987642 356788889999999999999999999876544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-06 Score=64.05 Aligned_cols=124 Identities=8% Similarity=-0.083 Sum_probs=71.7
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAGSK--EST 170 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g~~--~~A 170 (229)
..|+++.|+..|....+... .+...|..+-..|...|++++|...|++..+....+...|..+-.. |.+.|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 34556666666655544333 3455666666666777777777777766554332245555555555 5566666 777
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+.|++..+..- -+...+..+-..+...|+.++|.+.+++..+..+.+
T Consensus 101 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALALDS-----NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHhCC-----CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777766665432 245556666666667777777777776666654443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.5e-05 Score=60.96 Aligned_cols=128 Identities=10% Similarity=-0.081 Sum_probs=105.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-..+.+.|++++|+..|+...+. -. +|...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 14 g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 14 GNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH
Confidence 34567899999999999988765 32 56777777889999999999999999998766422567899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDE-------YVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~-------~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|++..+..- -|. .+|..+-..+...|++++|.+.+++.-+..+.
T Consensus 93 ~~A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 93 QEYIATLTEGIKAVP-----GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 999999999987542 233 45777888889999999999999988776543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.3e-06 Score=73.33 Aligned_cols=123 Identities=7% Similarity=-0.107 Sum_probs=91.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|+..|....+... .+..+|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456778888888877765444 45677888888888888888888888887665422456788888888888888888
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|++..+..- .+..+|..+...+...|++++|.+.++++.+.
T Consensus 364 ~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 364 EAFFNETKLKFP-----TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHCT-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-----CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888876642 35567777888888888888888888876554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.4e-06 Score=70.61 Aligned_cols=130 Identities=15% Similarity=0.063 Sum_probs=102.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-----Q-QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-----~-~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|+...+.. . .| ....|+.+-..|.+.|++++|.+.|++..+. + .|+ ..
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3455667899999999999886542 1 12 3567888889999999999999999987664 2 333 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------------CCCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG-----------------------------------------------VGCS 185 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g-----------------------------------------------~~~~ 185 (229)
+|+.+-..|.+.|++++|.+.|++..+.. ..
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 274 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-- 274 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------C--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC--
Confidence 89999999999999999999999987531 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+..+|..+...|.+.|++++|.+++++.-+..
T Consensus 275 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 275 -PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 0345678899999999999999999999876653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.5e-06 Score=73.45 Aligned_cols=124 Identities=6% Similarity=-0.143 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|+...+. . |+...|..+...|.+.|++++|...|++..+....+..+|..+...|.+.|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~-~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL-F-PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-C-CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-C-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 34455667777777777666442 2 335556666666666666666666666655443224455666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|.+.|++..+..- .+..++..+...+...|++++|.++++++.+.
T Consensus 322 ~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 322 QAGKDFDKAKELDP-----ENIFPYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHHHHTCS-----SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh-----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666666655432 24445555666666666666666666655544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-05 Score=72.03 Aligned_cols=127 Identities=9% Similarity=-0.116 Sum_probs=109.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+...|++++|+..|+...+ .. |+...|..+-..|.+.|++++|...|++..+...-+..+|..+...|.+.|++++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESIN-LH-PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-HC-CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcccHHHHHHHHHHHHh-cC-CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 456778999999999998865 44 7788899999999999999999999999876653367899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|.+.|++..+..- -+..+|..+...+...|++++|.+++++.-+..+..
T Consensus 329 A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 377 (537)
T 3fp2_A 329 AKEDFQKAQSLNP-----ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377 (537)
T ss_dssp HHHHHHHHHHHCT-----TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999988653 356788899999999999999999999888775543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.37 E-value=5.7e-06 Score=67.04 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH----cC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE----YQ--QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~----~~--~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|....+. .. .| ...+|..+-..|.+.|++++|...|++..+. + .|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 445667889999999999987653 22 02 3567888999999999999999999987664 2 232 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------------------------------------------CCCC
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSG-----------------------------------------------VGCS 185 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g-----------------------------------------------~~~~ 185 (229)
+|..+-..|.+.|++++|.+.|++..+.. ..
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 248 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-- 248 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC--
Confidence 89999999999999999999999887530 11
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 186 WKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 186 ~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
..+..+|..|...+.+.|++++|.+++++.-+.
T Consensus 249 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 249 -PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 023457888999999999999999999987554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.4e-05 Score=54.74 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=51.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|+++.|...|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|+++
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 89 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 89 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHH
Confidence 3344556666666666665544332 345555556666666666666666666554433223455566666666666666
Q ss_pred HHHHHHHHHHHc
Q 026993 169 STVRIYGLMKRS 180 (229)
Q Consensus 169 ~A~~~f~~M~~~ 180 (229)
+|.+.|.+..+.
T Consensus 90 ~A~~~~~~~~~~ 101 (118)
T 1elw_A 90 EAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHc
Confidence 666666655543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.8e-05 Score=65.78 Aligned_cols=129 Identities=7% Similarity=-0.081 Sum_probs=79.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLA-KNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~-k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
..+.+.|++++|..+|+...+... .+...|........ ..|+.++|..+|+...+...-+...|..++..+.+.|+.+
T Consensus 142 ~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 220 (308)
T 2ond_A 142 KFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220 (308)
T ss_dssp HHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence 334455566666666655543211 22233332222211 2466666666666654432114667788888888888888
Q ss_pred HHHHHHHHHHHcC-CCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 169 STVRIYGLMKRSG-VGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 169 ~A~~~f~~M~~~g-~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+|..+|++..+.. +. | +...|..++....+.|+.+.|.++++++.+..|.+
T Consensus 221 ~A~~~~~~al~~~~l~----p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 221 NTRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHSSSSC----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCC----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 8888888887753 33 5 35677777888888888888888888877766553
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=56.11 Aligned_cols=102 Identities=15% Similarity=-0.041 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC--CHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGK 194 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P--d~~Ty~ 194 (229)
...|..+-..+.+.|++++|...|++..+....+...|..+-..|.+.|++++|.+.|++..+..- - +...+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~ 80 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-----DEYNKDVWA 80 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-----CTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----ccchHHHHH
Confidence 344566666777788888888888776654433566777777778888888888888877776531 2 467777
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhhhcCCCC
Q 026993 195 VLSKGLRRF-GEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 195 ~Li~~~~~~-g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+...+.+. |+.++|.+.+++.-+..+++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 777778888 88888888888777765543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.31 E-value=7.5e-06 Score=66.32 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=102.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-----C-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CCC-HH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-----Q-QQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GGD-GR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-----~-~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~pd-~~ 152 (229)
+-..+...|++++|+..|+...+.. . .| ...+|+.+-..|...|++++|...|.+..+. . .|+ ..
T Consensus 49 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 128 (283)
T 3edt_B 49 LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAK 128 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 4455778999999999999876541 1 12 3567889999999999999999999987654 1 233 57
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRS------GVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~------g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+|..+-..|...|++++|.+.|++..+. +.. | +..++..+-..+.+.|++++|.+++++..+.
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD----PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999998765 222 3 4578889999999999999999999977664
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-05 Score=62.11 Aligned_cols=129 Identities=10% Similarity=-0.082 Sum_probs=88.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
-..+.+.|++++|+..|+...+....++ ...|..+-..|.+.|++++|...|++..+...-+..+|..+-..|.+.|+
T Consensus 44 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccC
Confidence 3356778888888888887765311122 33477778888888888888888888766542345678888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+++|.+.|++..+..- -+..+|..+-..+...+++++|.+.+++.-+..+.
T Consensus 124 ~~~A~~~~~~al~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 174 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPTT-----TDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174 (272)
T ss_dssp HHHHHHHHGGGCCSSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 8888888887766521 35555655552444456888888888877666544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-05 Score=70.05 Aligned_cols=130 Identities=12% Similarity=0.009 Sum_probs=109.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|++.|+...+... .+...|..+-..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++
T Consensus 29 lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 107 (568)
T 2vsy_A 29 LADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107 (568)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778999999999988765433 46778999999999999999999999998765433578999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHhhhcCCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF---GEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~---g~~~~A~~v~~e~~~~~~~~ 223 (229)
++|.+.|++..+..- -+...+..+...+... |+.++|.+.+++.-+..+..
T Consensus 108 ~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 108 EAAAAAYTRAHQLLP-----EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999987653 3677888899999999 99999999999887776554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.8e-05 Score=72.92 Aligned_cols=125 Identities=12% Similarity=-0.009 Sum_probs=87.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
+-..+.+.|++++|++.|++..+. . | +...|+.|=..|.+.|++++|.+.|++..+...-+...|+.+=..|.+.|+
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l-~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~ 126 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRI-S-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566778888888877776542 3 4 456777777788888888888888877655431245677788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|++.|++..+..- =+...|..|...+...|++++|.+.++++.+.
T Consensus 127 ~~eAi~~~~~Al~l~P-----~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 127 IPEAIASYRTALKLKP-----DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHHHHCS-----CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-----CChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 8888888877766531 24566777777888888888887777766554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1e-05 Score=66.76 Aligned_cols=127 Identities=11% Similarity=-0.026 Sum_probs=100.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH----c--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC------C-CC-CHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE----Y--QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEI------D-GG-DGRGL 154 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~----~--~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~------g-~p-d~~ty 154 (229)
..+...|++++|+.+|+...+. . ..| ...+|..+-..|...|++++|...|++..+. + .| ...+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 4467889999999999988653 1 102 3567888999999999999999999987654 2 23 35789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRS------GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~------g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+-..|...|++++|.+.|.+..+. +.. .....++..+...+...|++++|.+++++..+.
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH---PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988764 332 024567888999999999999999999877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=55.13 Aligned_cols=102 Identities=10% Similarity=-0.067 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+-..+...|++++|...|++..+....+...|..+-..|...|++++|.+.|.+..+..- .+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-----AYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-----cCHHHHHH
Confidence 4567888888999999999999999998765433678899999999999999999999999987643 46778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...+.+.|++++|.+.+++..+..+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 112 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPD 112 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCcc
Confidence 999999999999999999988776554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-05 Score=55.74 Aligned_cols=111 Identities=10% Similarity=0.012 Sum_probs=80.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|+++.|+..|+...+... .+...|..+-..|.+.|++++|...|++..+....+...|..+-..|.+.|++
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhH
Confidence 34456778889999988888765333 46778888888888899999999999887765433567888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
++|.+.|++..+..- -+...+..+-..+.+.|
T Consensus 101 ~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 101 TKAMDVYQKALDLDS-----SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHCG-----GGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHhc
Confidence 999999988876532 23345555555554443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-05 Score=64.63 Aligned_cols=126 Identities=6% Similarity=-0.084 Sum_probs=98.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH-H
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD-LG-LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV-E 163 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~-~ 163 (229)
.....+.+.|++++|..+|+...+ .. |+ .. .|..+...+.+.|++++|..+|++..+...++...|........ .
T Consensus 104 ~~~~~~~~~~~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 104 AYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT-SS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-cc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 445556788999999999998875 33 43 33 89999999999999999999999988765334555654433322 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.|+.++|.++|++..+.. + -+...|..++..+.+.|+.++|+.+|+..-+.
T Consensus 182 ~~~~~~A~~~~~~al~~~-p----~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-G----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-T----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHhC-C----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 699999999999987753 2 36678889999999999999999999988774
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=2e-05 Score=56.67 Aligned_cols=102 Identities=8% Similarity=-0.140 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+...|..+-..+.+.|++++|...|++..+...-+...|..+-..|...|++++|.+.|++..+..- .+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~ 88 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-----TFIKGYT 88 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-----TCHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CchHHHH
Confidence 35667888999999999999999999998765533678999999999999999999999999987643 4678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+-..+.+.|++++|.+.+++..+..+
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence 999999999999999999998776644
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.21 E-value=0.00026 Score=56.86 Aligned_cols=133 Identities=12% Similarity=0.016 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHhhhC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQDL-GLLTDLINTLAK------------------NGLTGEVDRLIGELEEI 146 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~-~ty~~LI~~~~k------------------~g~~~~A~~lf~~M~~~ 146 (229)
.+-..+.+.|++++|+..|+...+.+. .+.. ..|..+-..|.+ .|+.++|...|++..+.
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 345667889999999999999877532 1221 123223233332 57899999999999876
Q ss_pred CCCCH-HHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHHHHHHHhcC
Q 026993 147 DGGDG-RGLS-----------------RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE----YVGKVLSKGLRRFG 204 (229)
Q Consensus 147 g~pd~-~tyn-----------------~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~Li~~~~~~g 204 (229)
. |+. ..+. .+-..|.+.|++++|...|+++.+.- |+. -.+..+...+.+.|
T Consensus 126 ~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 126 Y-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY------PDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp C-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS------TTSHHHHHHHHHHHHHHHHTT
T ss_pred C-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC------cCCCccHHHHHHHHHHHHHcC
Confidence 4 332 2222 34456889999999999999998753 442 45777999999999
Q ss_pred CHHHHHHHHHHhhhcCCCCCCC
Q 026993 205 EEELANEVEREFCWVPGGSLEN 226 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~~~~~ 226 (229)
+.++|.+.++.+....+.+++.
T Consensus 199 ~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp CHHHHHHHHHHHHHCCSCCCCC
T ss_pred CcHHHHHHHHHHHhhCCCchhh
Confidence 9999999999999998888763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.20 E-value=3.9e-05 Score=66.44 Aligned_cols=124 Identities=8% Similarity=-0.044 Sum_probs=96.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ--QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-----DGRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~--~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-----d~~tyn~lI~ 159 (229)
.+-..+...|+.++|++++...... . .-+...+..++..|.+.|+.+.|.+++++|.+. .| +..+...|..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CccccccchHHHHHHHH
Confidence 3456677789999999999876431 1 025677889999999999999999999999764 45 3566677776
Q ss_pred H--HHHcC--CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 160 A--VVEAG--SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 160 ~--~~~~g--~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+ ....| +..+|+.+|+++.+. . |+..+-..|++++.+.|++++|+++++.+.+
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~-~-----p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT-F-----PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT-S-----CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh-C-----CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6 33334 999999999998654 2 7756666777799999999999999986554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00024 Score=49.48 Aligned_cols=103 Identities=12% Similarity=-0.115 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+...+...|++++|...|++.......+...|..+-..|.+.|++++|.+.|++..+..- .+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~ 77 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----DWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----ccHHHHHH
Confidence 3456788888999999999999999998765433678899999999999999999999999987653 46788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+...+...|+.++|.+.+++..+..+..
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 105 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHEANN 105 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999988876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-05 Score=70.15 Aligned_cols=120 Identities=12% Similarity=-0.034 Sum_probs=55.8
Q ss_pred HHhcCCH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc------
Q 026993 92 LIRQGEC-AVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA------ 164 (229)
Q Consensus 92 l~~~g~~-~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~------ 164 (229)
+...|++ ++|++.|+...+... -+...|..+-..|.+.|++++|.+.|++..+.. |+...|..+-..|...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CCHHHHHHHHHHHTTCCCSCHH
T ss_pred HHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHhccCChh
Confidence 3445555 555555555443221 234445555555555555555555555544332 3344444444444444
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHhhh
Q 026993 165 ---GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------GEEELANEVEREFCW 218 (229)
Q Consensus 165 ---g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------g~~~~A~~v~~e~~~ 218 (229)
|++++|.+.|++..+..- -+...|..+-..+... |++++|.+.|++.-+
T Consensus 190 ~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMDV-----LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 555555555554444321 2334444444444444 444444444444333
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.1e-07 Score=84.41 Aligned_cols=112 Identities=17% Similarity=0.208 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
...+...+.+.|++++|+..++..++. . ++..+++.|+.+|.|.|+++++.++|+ .|+..+|+.+-..|...
T Consensus 64 y~~V~~~ae~~g~~EeAi~yl~~ark~-~-~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~ 135 (449)
T 1b89_A 64 YMEVVQAANTSGNWEELVKYLQMARKK-A-RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDE 135 (449)
T ss_dssp -----------------------------------------------CHHHHTTTTT------CC---------------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh-C-ccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHc
Confidence 345777788889999999877666553 3 567889999999999999999887774 26777999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
|++++|...|..+ . .|..|.+.+.+.|++++|.+.++.+.
T Consensus 136 g~yeeA~~~Y~~a-----~--------n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 136 KMYDAAKLLYNNV-----S--------NFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -CTTTHHHHHHHT-----T--------CHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh-----h--------hHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 9999999999866 1 68889999999999999999988773
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.16 E-value=4.9e-05 Score=54.18 Aligned_cols=103 Identities=10% Similarity=0.111 Sum_probs=80.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCC----HHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID---GGD----GRGLSRVVRA 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g---~pd----~~tyn~lI~~ 160 (229)
+-..+.+.|+++.|+..|....+... .+...|..+-..|.+.|++++|...|++..+.. .++ ..+|..+-..
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 34456788999999999988876544 567788889999999999999999999876654 122 6788888999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 161 VVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
|.+.|++++|.+.|++..+.. ||......+-
T Consensus 89 ~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~l~ 119 (131)
T 1elr_A 89 YFKEEKYKDAIHFYNKSLAEH------RTPDVLKKCQ 119 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC------CCHHHHHHHH
Confidence 999999999999999988753 6654444443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.13 E-value=4.9e-05 Score=54.17 Aligned_cols=102 Identities=10% Similarity=-0.075 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVG 193 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty 193 (229)
..|..+-..+.+.|++++|...|++..+....+...|..+-..|.+.|++++|...|.+..+..-.. .++ ..+|
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN--REDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 4577888899999999999999999876553467889999999999999999999999987653210 023 7788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
..+-..+.+.|++++|.+.+++..+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 8899999999999999999998877654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5.2e-05 Score=58.35 Aligned_cols=93 Identities=8% Similarity=-0.001 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|+..|+...+.-. -|...|..+=.+|.+.|++++|...|++..+...-+...|..+=.+|.+.|++
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 33456678888888888887765332 35667777878888888888888888877655422456777788888888888
Q ss_pred HHHHHHHHHHHHcC
Q 026993 168 ESTVRIYGLMKRSG 181 (229)
Q Consensus 168 ~~A~~~f~~M~~~g 181 (229)
++|.+.|++..+..
T Consensus 121 ~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 121 LKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888877653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00013 Score=53.88 Aligned_cols=89 Identities=13% Similarity=0.082 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|++++|++.|+...+... .+...|..+-.+|.+.|++++|...|++..+....+...|..+-..|.+.|++++|
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 100 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKA 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHH
Confidence 45677788888888777655333 35667777777788888888888888776654433566777777778888888888
Q ss_pred HHHHHHHHHc
Q 026993 171 VRIYGLMKRS 180 (229)
Q Consensus 171 ~~~f~~M~~~ 180 (229)
.+.|++..+.
T Consensus 101 ~~~~~~al~l 110 (126)
T 4gco_A 101 QRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777664
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00012 Score=63.12 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=100.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD---------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd---------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~t 153 (229)
-..+.+.|++++|+..|+...+... .+ ...|+.+-.+|.+.|++++|...|++..+...-+...
T Consensus 154 g~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 232 (336)
T 1p5q_A 154 GTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKG 232 (336)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTT-TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhh-ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 4456788999999999998866432 22 5889999999999999999999999987655336789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVERE 215 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e 215 (229)
|..+-.+|.+.|++++|.+.|++..+..- -+...+..+-..+.+.|+.++| .++++.
T Consensus 233 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 233 LSRRGEAHLAVNDFELARADFQKVLQLYP-----NNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987642 3677888899999999999998 344443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00012 Score=53.92 Aligned_cols=100 Identities=12% Similarity=-0.138 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSK 198 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~ 198 (229)
.|...=..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~lg~ 89 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-----KFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----hhhHHHHHHHH
Confidence 4555667899999999999999997765534678999999999999999999999999988653 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 199 GLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 199 ~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+...|++++|.+.|++.-+..|..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999888876654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00017 Score=52.68 Aligned_cols=92 Identities=17% Similarity=0.113 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
..-..+.+.|+++.|++.|+...+ .. |+ ...|..+-..|.+.|++++|...|++..+....+...|..+-..|.
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~-~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALG-LD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHT-SC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH-Hc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHH
Confidence 344556677888888877777654 33 54 5667777777777888888888887765543224667777777777
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 026993 163 EAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~ 180 (229)
+.|++++|.+.|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 888888888888777664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.3e-05 Score=69.02 Aligned_cols=122 Identities=11% Similarity=0.025 Sum_probs=89.5
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.|++++|++.|++..+... -+...|..+-..|.+.|++++|.+.|++..+...-+...|..+-..|.+.|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678889988888755333 457789999999999999999999999987665335789999999999999999999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++..+..- -+...|..+-..+.+.|+.++|.+.+++.-+..+.
T Consensus 81 ~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 81 QQASDAAP-----EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99987652 46788999999999999999999999988776554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00024 Score=56.60 Aligned_cols=124 Identities=7% Similarity=-0.039 Sum_probs=56.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC--HHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS--KES 169 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~--~~~ 169 (229)
+.+.|++++|+..|+...+... -|...|..+-..|.+.|++++|...|++..+...-+..+|..+-..|...|. .+.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555443222 2344455555555555555555555555443321133445444444443332 222
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+...|..... .. |+...+--+-.++...|+.++|.+.|++.-+..|.
T Consensus 143 ~~~~~~~~~~--~~----~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 143 LETDYKKLSS--PT----KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHC---C--CC----HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhC--CC----chhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3333333211 11 22222222233344567788888888877766553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00022 Score=54.17 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=79.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH
Confidence 34457789999999999998876544 47788999999999999999999999998766533578999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 026993 168 ESTVRIYGLMKRSG 181 (229)
Q Consensus 168 ~~A~~~f~~M~~~g 181 (229)
++|.+.|++..+..
T Consensus 96 ~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 96 KGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.00013 Score=69.88 Aligned_cols=127 Identities=13% Similarity=0.019 Sum_probs=107.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.++|++++|++.|++..+... -+...|+.|=..|.+.|++++|...|++..+...-+...|+.+=..|.+.|++++
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~ 95 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 457789999999999998866332 3577899999999999999999999998776542247899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|.+.|++-.+..- -+...|+.|-..+.+.|++++|.+.|++.-+..+.
T Consensus 96 A~~~~~kAl~l~P-----~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 96 ALQCYTRAIQINP-----AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999887642 35778999999999999999999999987776554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.08 E-value=9.9e-05 Score=56.17 Aligned_cols=103 Identities=14% Similarity=-0.054 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-----KYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHH
Confidence 4556778888999999999999999998765433678999999999999999999999999988653 46788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
+-..+.+.|++++|.+.|++.-+..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999887765443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=7.5e-05 Score=56.67 Aligned_cols=92 Identities=12% Similarity=-0.048 Sum_probs=70.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... .|...|..+=.+|.+.|++++|...|++..+...-+...|..+-..|...|++
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34556788899999988888765433 46777888888888889999999998887655422456778888888889999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|++..+.
T Consensus 106 ~~A~~~~~~al~~ 118 (148)
T 2vgx_A 106 AEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00021 Score=51.96 Aligned_cols=91 Identities=10% Similarity=-0.065 Sum_probs=54.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|....+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++
T Consensus 15 ~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 15 QGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhH
Confidence 33445566666666666666544333 34556666666666666666666666665544322455666666666666666
Q ss_pred HHHHHHHHHHHH
Q 026993 168 ESTVRIYGLMKR 179 (229)
Q Consensus 168 ~~A~~~f~~M~~ 179 (229)
++|.+.|.+..+
T Consensus 94 ~~A~~~~~~a~~ 105 (137)
T 3q49_B 94 DEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=9.9e-05 Score=65.35 Aligned_cols=122 Identities=7% Similarity=-0.138 Sum_probs=62.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+.+.|++++|+..|+...+.-. -+...|+.+-..|.+.|+ +++|...|++..+...-+...|+.+=..|.+.|++++|
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Confidence 3445555555555555543221 234445555555555554 55555555555443311344555555555555555555
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+..|++..+..- -|...|.-+-..+.+.|++++|.+.++++-+.
T Consensus 186 l~~~~kal~ldP-----~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 186 LEFIADILNQDA-----KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-----cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 555555554432 24445555555555555555555555544443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=8.3e-06 Score=73.93 Aligned_cols=111 Identities=14% Similarity=-0.027 Sum_probs=79.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
.+..+-..|...|.+++|...|..+. .|..|.++|++.|++++|.+.+.++. +..+|..++.+|+.
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~---------n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh---------hHHHHHHHHHHhccHHHHHHHHHHcC-----CchhHHHHHHHHHH
Confidence 34567778888889999998887662 38899999999999999999999883 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
.|+++.|..+...+. .. ||... .++..|.+.|++++|.++++..-
T Consensus 190 ~~ef~lA~~~~l~L~---~~----ad~l~--~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 190 GKEFRLAQMCGLHIV---VH----ADELE--ELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp TTCHHHHHHTTTTTT---TC----HHHHH--HHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHH---hC----HhhHH--HHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999966554422 22 77633 58899999999999988887543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00021 Score=58.33 Aligned_cols=128 Identities=11% Similarity=-0.038 Sum_probs=99.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD---LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAV 161 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd---~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~ 161 (229)
.-..+.+.|++++|+..|+.+.+... -+ ...+..+-..|.+.|++++|...|+...+.. .|+ ...|..+-..|
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~ 99 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCY 99 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHH
Confidence 34457789999999999999876532 23 5677888889999999999999999987653 333 35677777778
Q ss_pred HH--------cCCHHHHHHHHHHHHHcCCCCCCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 026993 162 VE--------AGSKESTVRIYGLMKRSGVGCSWKVD-EYVG-----------------KVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 162 ~~--------~g~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty-----------------~~Li~~~~~~g~~~~A~~v~~e 215 (229)
.+ .|++++|.+.|++..+.. |+ .... -.+-..+.+.|++++|.+.+++
T Consensus 100 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 100 YKLSPPYELDQTDTRKAIEAFQLFIDRY------PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHCCCTTSCCHHHHHHHHHHHHHHHHC------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHC------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 88 999999999999998754 32 2233 3457778999999999999998
Q ss_pred hhhcCCC
Q 026993 216 FCWVPGG 222 (229)
Q Consensus 216 ~~~~~~~ 222 (229)
+-+..|.
T Consensus 174 ~l~~~p~ 180 (261)
T 3qky_A 174 VFDAYPD 180 (261)
T ss_dssp HHHHCTT
T ss_pred HHHHCCC
Confidence 8776554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00011 Score=50.91 Aligned_cols=91 Identities=8% Similarity=-0.089 Sum_probs=78.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHc-CC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG--DGRGLSRVVRAVVEA-GS 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p--d~~tyn~lI~~~~~~-g~ 166 (229)
..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.... +...|..+-..|.+. |+
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK 92 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence 446788999999999999876544 56778999999999999999999999998876533 578999999999999 99
Q ss_pred HHHHHHHHHHHHHcC
Q 026993 167 KESTVRIYGLMKRSG 181 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g 181 (229)
+++|.+.|.+.....
T Consensus 93 ~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 93 EVEAEIAEARAKLEH 107 (112)
T ss_dssp SHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhhcc
Confidence 999999999988754
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0003 Score=53.98 Aligned_cols=101 Identities=10% Similarity=-0.078 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...+..+=..|.+.|++++|...|+...+...-|...|..+=..|.+.|++++|.+.|++..+..- -+...|.-+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-----~~~~~~~~l 110 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-----NDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-----SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-----CCcHHHHHH
Confidence 445677777899999999999999998866433678999999999999999999999999987653 245677889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-..|.+.|+.++|.+.|+..-+..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999987776543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=8.3e-05 Score=55.45 Aligned_cols=92 Identities=11% Similarity=-0.025 Sum_probs=72.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... .|...|..+=..|.+.|++++|...|+...+...-+...|..+-..|...|++
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 34556788999999999988765433 46777888888889999999999999887765422456777888888999999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887664
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.4e-05 Score=67.95 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLT-GEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~-~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
.++.+++.++....... .+...|..+=..|...|++ ++|.+.|++..+...-+...|+.+-..|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677777776543333 4678888888999999999 999999999876542357899999999999999999999999
Q ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCC
Q 026993 176 LMKRSGVGCSWKVDEYVGKVLSKGLRRF---------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~---------g~~~~A~~v~~e~~~~~~~ 222 (229)
+..+. . |+...|..+-..+... |++++|.+.+++.-+..+.
T Consensus 162 ~al~~--~----p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 211 (474)
T 4abn_A 162 GALTH--C----KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL 211 (474)
T ss_dssp HHHTT--C----CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhh--C----CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC
Confidence 99865 3 8889999999999999 9999999999988776554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00042 Score=56.51 Aligned_cols=132 Identities=10% Similarity=-0.069 Sum_probs=98.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhCCCCC-HHHH--
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAK--------NGLTGEVDRLIGELEEIDGGD-GRGL-- 154 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k--------~g~~~~A~~lf~~M~~~g~pd-~~ty-- 154 (229)
+-..+.+.|++++|+..|+...+.+. .|+ ...|..+-..|.+ .|++++|...|++..+.. |+ ...+
T Consensus 58 lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a 136 (261)
T 3qky_A 58 LARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDA 136 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHH
Confidence 44567889999999999999877532 133 3456677778888 999999999999987654 32 2233
Q ss_pred ---------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhc----------CCHHH
Q 026993 155 ---------------SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRF----------GEEEL 208 (229)
Q Consensus 155 ---------------n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~----------g~~~~ 208 (229)
-.+-..|.+.|++++|...|++..+..-. .| ....+..+...+.+. |++++
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---TPWADDALVGAMRAYIAYAEQSVRARQPERYRR 213 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHhcccchhhcccchHHH
Confidence 45577789999999999999999875321 01 234566677777766 89999
Q ss_pred HHHHHHHhhhcCCCC
Q 026993 209 ANEVEREFCWVPGGS 223 (229)
Q Consensus 209 A~~v~~e~~~~~~~~ 223 (229)
|.+.++++-+..|.+
T Consensus 214 A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 214 AVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCC
Confidence 999999888876654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00025 Score=52.86 Aligned_cols=100 Identities=8% Similarity=-0.174 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
..|..+-..+.+.|++++|...|++..+....+..+|..+-..|.+.|++++|.+.|.+..+..- .+..+|..+-
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~a 88 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----ccHHHHHHHH
Confidence 45777778899999999999999998765533678999999999999999999999999887642 4678888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 198 KGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..+...|++++|.+.+++.-+..+.
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~~~~p~ 113 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVVKVKPH 113 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999988776554
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00018 Score=57.31 Aligned_cols=128 Identities=10% Similarity=-0.096 Sum_probs=100.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH-------HHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG-------RGLSRVVRAV 161 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~-------~tyn~lI~~~ 161 (229)
-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+. ..|..+=..+
T Consensus 49 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 49 GVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 3456788999999999988865332 3566889999999999999999999999876541133 4577777888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCC---HHHHHHHHHHHHhcCCH---------------------------HHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVD---EYVGKVLSKGLRRFGEE---------------------------ELANE 211 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd---~~Ty~~Li~~~~~~g~~---------------------------~~A~~ 211 (229)
.+.|++++|.+.|++..+.. |+ ...|..+-..+...|+. ++|.+
T Consensus 128 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~ 201 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVT------SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVD 201 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSS------CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC------CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998653 66 46777777888887877 88888
Q ss_pred HHHHhhhcCCCC
Q 026993 212 VEREFCWVPGGS 223 (229)
Q Consensus 212 v~~e~~~~~~~~ 223 (229)
.+++..+..|..
T Consensus 202 ~~~~a~~l~p~~ 213 (228)
T 4i17_A 202 YLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHhhcCCCC
Confidence 888877765544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00018 Score=60.40 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=87.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH-HHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRV-VRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l-I~~~~~~g 165 (229)
..-..+.+.|++++|...|+...+... -+...+..+-..|.+.|++++|..+|++.... .|+...+... -..+.+.|
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-DQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-GCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-hcchHHHHHHHHHHHHhhc
Confidence 344556789999999999998876433 36678889999999999999999999987543 3443322222 22255666
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.++|.+.|.+..+..- .|...+..+-..+...|+.++|.+.+++.-+..|
T Consensus 200 ~~~~a~~~l~~al~~~P-----~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENP-----EDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp TSCHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccCccHHHHHHHHhcCC-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 66677777776665542 3455666677777777777777777776655543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0002 Score=51.75 Aligned_cols=91 Identities=15% Similarity=0.070 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+.+.|++++|+..|....+... .+...|..+-.+|.+.|++++|...|++..+...-+...|..+-..|...|+++
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 89 (126)
T 3upv_A 11 GKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 89 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHH
Confidence 3456677888888888877655433 456777777778888888888888887766544224667777777788888888
Q ss_pred HHHHHHHHHHHc
Q 026993 169 STVRIYGLMKRS 180 (229)
Q Consensus 169 ~A~~~f~~M~~~ 180 (229)
+|.+.|++..+.
T Consensus 90 ~A~~~~~~al~~ 101 (126)
T 3upv_A 90 SALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888776653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00026 Score=59.18 Aligned_cols=128 Identities=9% Similarity=-0.087 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
.+..+.+.|++++|..+++...+... .|+. ..|..+...+...|++++|...|++..+.. .+| ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678899999999999999876421 1442 244557777788889999999999987643 334 237999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----c-CCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKR----S-GVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~----~-g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|-..|...|++++|.+.|++..+ . +.. +.. .+|.-+-..|.+.|+.++|.+.+++.-+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNE----EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccch----hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 2 222 333 37888999999999999999999866543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00033 Score=53.00 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=81.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|++.|+...+.-. -+...|..+=..|.+.|++++|...|++..+...-+...|..+-..|.+.|+.
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence 34457788999999999988766433 36778888999999999999999999987765422467888888899999998
Q ss_pred HHHHHHH-HHHHHcCCCCCCCC-CHHHHHHHHHHHHhcC
Q 026993 168 ESTVRIY-GLMKRSGVGCSWKV-DEYVGKVLSKGLRRFG 204 (229)
Q Consensus 168 ~~A~~~f-~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g 204 (229)
++|.+.| ++..+.. | +..+|...-.-+...|
T Consensus 116 ~~aa~~~~~~al~l~------P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 116 DGRAKYWVERAAKLF------PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp SSHHHHHHHHHHHHS------TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHhC
Confidence 8877665 6666543 4 4566666555555555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=59.01 Aligned_cols=122 Identities=5% Similarity=-0.101 Sum_probs=92.8
Q ss_pred hcCCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVR 172 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~ 172 (229)
..|+++.|+..+...... . | +...+-.|=..|.+.|++++|.+.|++..+...-+..+|..+=..|.+.|++++|..
T Consensus 9 ~~~~~e~ai~~~~~a~~~-~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS-P-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS-H-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcChHHHHHHHHHHhccc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 346778888777655321 1 2 233455677889999999999999999876542367899999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHhhhcCCC
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEV-EREFCWVPGG 222 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v-~~e~~~~~~~ 222 (229)
.|++..+..- -+..+|..+-..+.+.|+.++|.+. ++..-+..|.
T Consensus 87 ~~~~al~~~p-----~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 87 CYRRSVELNP-----TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp HHHHHHHHCT-----TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 9999987642 2567888899999999999877665 4666655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00024 Score=65.12 Aligned_cols=130 Identities=9% Similarity=-0.033 Sum_probs=100.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----cC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-
Q 026993 87 AALRELIRQGECAVAVHVFSTIQRE----YQ--QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--GGDG- 151 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~----~~--~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~- 151 (229)
..+..+..+|++++|+.+++...+. +. .|+ ..+++.|-..|...|++++|..++.+..+ -| .|++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455677899999999999887543 44 133 35799999999999999999999987543 34 5554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEY-VGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+||.|=..|...|++++|..+|++-.+ .|-. .|+.. +.+.|-..+...|+.++|+.+++.+++.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~---Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS---HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999987543 3533 36554 4466667777888999999999988773
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00043 Score=49.92 Aligned_cols=98 Identities=10% Similarity=-0.185 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
..|..+=..+.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..+-
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CcHHHHHHHH
Confidence 35666677889999999999999998765433678999999999999999999999999988653 4678899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcC
Q 026993 198 KGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..+...|++++|.+.+++.-+..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999877654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00039 Score=51.71 Aligned_cols=100 Identities=13% Similarity=0.016 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...+..+-..+.+.|++++|...|++......-+...|..+=..|.+.|++++|...|++..+..- -|...|..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~l 92 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-----NEPRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCcHHHHHH
Confidence 345556667889999999999999998765433678899999999999999999999999988653 355677889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
-..+...|++++|.+.++...+..+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999998776543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00052 Score=49.75 Aligned_cols=102 Identities=8% Similarity=-0.156 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+...|..+-..+.+.|++++|...|.+..+...-+...|..+-..|.+.|++++|...|++..+..- -+...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-----QSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----hhHHHHH
Confidence 46778889999999999999999999997765533578999999999999999999999999988653 4678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
.+-..+...|++++|.+.+++.-+..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999999998776533
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00028 Score=57.95 Aligned_cols=130 Identities=9% Similarity=-0.099 Sum_probs=99.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
+-..+...|++++|+..|+...+... .++ ..+|..+-..|.+.|++++|...|++..+.. ..+ ..+|..
T Consensus 189 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 268 (338)
T 3ro2_A 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 268 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 34456678999999999988765411 022 3478888899999999999999998865432 222 568889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+-..|.+.|++++|.+.|++..+. +-. .....++..+-..+.+.|++++|.+.+++..+..
T Consensus 269 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 269 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 999999999999999999987653 211 0124578889999999999999999999887764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00024 Score=54.78 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 136 VDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 136 A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
|...|++..+...-|...|..+-..+.+.|++++|.+.|.+..+..-. ..+...+..|...+...|+.++|...+++
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG---AQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---TTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc---cChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 455555544332113556666666666666666666666666554311 01244566666666666666666666653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0004 Score=49.82 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDL---GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVR 159 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~---~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~ 159 (229)
..-..+.+.|++++|+..|+...+... .+. ..+..+-..|.+.|++++|...|++..+.. |+ ...+..+-.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 344567788999999999988866532 222 366677778889999999999998877654 32 466778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC
Q 026993 160 AVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.|.+.|+.++|.+.|++..+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8889999999999998887753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00041 Score=54.35 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQD--------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGL 154 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd--------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ty 154 (229)
..+.+.|++++|+..|....+... .|+ ...|..+-.+|.+.|++++|...|++..+....+...|
T Consensus 46 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 125 (198)
T 2fbn_A 46 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKAL 125 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHH
Confidence 346789999999999998876422 121 26888888999999999999999999876543467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELAN 210 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~ 210 (229)
..+-..|.+.|++++|.+.|++..+..- -+...+..+-..+...|+.+++.
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASLNP-----NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887642 35667777777777777776665
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.001 Score=47.65 Aligned_cols=98 Identities=11% Similarity=-0.042 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC-HHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGD-G---RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD-EYVGKVL 196 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~---~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd-~~Ty~~L 196 (229)
.+-..+.+.|++++|...|++..+.. |+ . ..|..+-..|.+.|++++|.+.|++..+..-. .+. ...+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---STTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---CcccHHHHHHH
Confidence 34457788999999999999987654 33 2 47778888999999999999999999876421 011 5667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-..+.+.|+.++|.+.++++-+..|.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 889999999999999999887765543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00071 Score=56.68 Aligned_cols=132 Identities=11% Similarity=-0.033 Sum_probs=98.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhCC--CCC----HHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKN-GLTGEVDRLIGELEEID--GGD----GRGL 154 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~-g~~~~A~~lf~~M~~~g--~pd----~~ty 154 (229)
.+-..+.+.|++++|+..|+...+... ..| ..+|+.+-..|.+. |++++|...|++-.+.. ..+ ..+|
T Consensus 82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 344567788999999999988765411 022 35788888899996 99999999998765432 112 3578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE-----YVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-----~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.+-..|.+.|++++|++.|++..+.... .++. .+|..+...+...|+.++|.+.+++..+..+
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMG---NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSS---CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhc---CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999875432 0221 1567777888999999999999998877544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00085 Score=48.98 Aligned_cols=128 Identities=9% Similarity=-0.108 Sum_probs=96.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~l 157 (229)
-..+...|++++|+..|....+... ..+ ..+|..+-..|...|++++|...|++..+.. ..+ ...|..+
T Consensus 16 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 95 (164)
T 3ro3_A 16 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 95 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 3446678999999999988765411 022 2478888899999999999999999865432 222 4578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..|...|++++|.+.|.+..+. +.. .....++..+-..+...|+.++|.+.+++..+.
T Consensus 96 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 96 GNTYTLLQDYEKAIDYHLKHLAIAQELKDR---IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHccch---HhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 89999999999999999887643 221 012457788889999999999999999977654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00055 Score=51.76 Aligned_cols=101 Identities=14% Similarity=0.021 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...+..+-..|.+.|++++|...|.+.......+...|..+=..|.+.|++++|.+.|++..+..- -|...|..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----XEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCchHHHH
Confidence 3456777778899999999999999998765433678899999999999999999999999987652 35577888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 196 LSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+-..+...|+.++|.+.|+..-+..+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999998777644
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.001 Score=48.35 Aligned_cols=103 Identities=12% Similarity=-0.065 Sum_probs=87.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE 190 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~ 190 (229)
.+...|..+-..+.+.|++++|...|++..+.. |+ ...|..+-..|.+.|++++|.+.|++..+..- .+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~~ 99 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----GDV 99 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----CCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----cCH
Confidence 456778888889999999999999999987654 55 67899999999999999999999999887642 367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 191 YVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
..|..+-..+...|+.++|.+.+++..+..+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 788889999999999999999999887765543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00067 Score=61.48 Aligned_cols=126 Identities=6% Similarity=-0.079 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH--HHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQD-L-GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS--RVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd-~-~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn--~lI~~~~ 162 (229)
.....+.+.|+++.|..+|+...+ .. |+ . ..|......+.+.|++++|..+|+.-.+....+...|- .++. +.
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~-~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~-~~ 402 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLA-IE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-YY 402 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-SS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhC-cc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH-HH
Confidence 344556678899999999988866 33 43 2 47888888888888899999998887654311222222 2221 33
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
..|+.++|..+|++..+.. + -+...|..+++.+.+.|+.++|+.+|+..-...
T Consensus 403 ~~~~~~~A~~~~e~al~~~-p----~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-G----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH-T----TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HcCChhHHHHHHHHHHHHC-C----CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5788888888888776642 1 256777888888888888888888888776653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00065 Score=57.89 Aligned_cols=129 Identities=10% Similarity=-0.085 Sum_probs=99.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
+-..+...|++++|+..|+...+... .++ ..+|..+-..|.+.|++++|...|++..+.. ..+ ..+|..
T Consensus 193 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 272 (406)
T 3sf4_A 193 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 272 (406)
T ss_dssp HHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHH
Confidence 34456678999999999998765411 133 3478888899999999999999998865432 222 568899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-..|.+.|++++|.+.|.+..+..-. .+| ..++..+-..+.+.|++++|.+.+++.-+.
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQE---LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999987653211 022 567888999999999999999999875543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00014 Score=65.95 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=91.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
+.+.|++++|++.|++..+... -+...|+.+-..|.+.|++++|.+.|++..+...-+..+|..+-..|.+.|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4567999999999998876443 468889999999999999999999999988765336789999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
+.|++..+..-. .++....-..+..+.+.|++++|.+++++
T Consensus 95 ~~~~~al~~~p~---~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 95 RDYETVVKVKPH---DKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHSTT---CTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998876422 14444444444448888999999999884
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00024 Score=61.30 Aligned_cols=129 Identities=10% Similarity=-0.036 Sum_probs=99.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC----CHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG----DGRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p----d~~tyn~ 156 (229)
+-..+.+.|++++|+..|++..+... ..+ ..+|..+-..|.+.|++++|...|++..+.. .. ...+|..
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 308 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYS 308 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556788999999999988765411 022 3378889999999999999999998765432 11 2578899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-..|.+.|++++|.+.|++..+. +.. .-...+|..+-..+.+.|+.++|.+.+++..+.
T Consensus 309 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 309 LGNTYTLLHEFNTAIEYHNRHLAIAQELGDR---IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999999999999999987653 211 012457888999999999999999999876654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0012 Score=51.55 Aligned_cols=94 Identities=6% Similarity=-0.188 Sum_probs=78.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C--------------C
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-G-G--------------D 150 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p--------------d 150 (229)
.+-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.. . + +
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 120 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccc
Confidence 344567789999999999998876544 567889999999999999999999999987754 1 1 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 151 GRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 151 ~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
...|..+-..|.+.|++++|.+.|++..+..
T Consensus 121 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 2788999999999999999999999998754
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00034 Score=54.08 Aligned_cols=125 Identities=11% Similarity=-0.091 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH---cCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CC-C----HHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE---YQQ--QDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GG-D----GRGLSRV 157 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~---~~~--pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~p-d----~~tyn~l 157 (229)
..+...|++++|+..|+...+. ... ....+|+.+-..|...|++++|...|++..+.. .+ + ...++.+
T Consensus 34 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 113 (203)
T 3gw4_A 34 YVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEV 113 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 4466789999999999987663 110 134578888889999999999999998765431 22 2 3568888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-..+...|++++|.+.|.+..+. +. +. ..++..+-..+...|+.++|.+.+++..+.
T Consensus 114 g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 114 ATVALHFGDLAGARQEYEKSLVYAQQADD-----QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhccc-----hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999887632 22 22 344677888899999999999999866543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00019 Score=55.50 Aligned_cols=121 Identities=13% Similarity=-0.011 Sum_probs=89.9
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C--CCCHHHHHHHHHHHHHcCC
Q 026993 93 IRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI----D--GGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g--~pd~~tyn~lI~~~~~~g~ 166 (229)
...|++++|.++++.+..... ....+|+.+-..|...|++++|...|++..+. | .....+|+.+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPA-TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTT-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996655543222 35678889999999999999999999886652 2 1234688889999999999
Q ss_pred HHHHHHHHHHHHHc----CCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMKRS----GVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~~~----g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+++|.+.|.+-.+. |-. | ....+..+-..+...|++++|.+.+++..+
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPED----PLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcc----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999886543 211 2 135678888899999999999999987654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0007 Score=51.70 Aligned_cols=93 Identities=6% Similarity=0.081 Sum_probs=77.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINT-LAKNGLT--GEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~-~~k~g~~--~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
+-..+...|+++.|+..|+...+... .+...|..+-.. |.+.|++ ++|...|++..+...-+...|..+-..|.+.
T Consensus 50 lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 34456789999999999999876544 467778888888 7799998 9999999998766533577888999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 026993 165 GSKESTVRIYGLMKRSG 181 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g 181 (229)
|++++|.+.|.+..+..
T Consensus 129 g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhhC
Confidence 99999999999998764
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00047 Score=60.93 Aligned_cols=126 Identities=9% Similarity=-0.032 Sum_probs=102.1
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 89 LRELIRQGE-CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 89 l~~l~~~g~-~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
-..+.+.|+ +++|+..|+...+.-. -+...|+.+=..|.+.|++++|...|++..+...-|...|+.+-..+.+.|++
T Consensus 138 g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~ 216 (382)
T 2h6f_A 138 RVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW 216 (382)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence 344667886 9999999999876433 46778999999999999999999999998876533688999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh-cCCHHHH-----HHHHHHhhhcC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR-FGEEELA-----NEVEREFCWVP 220 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~-~g~~~~A-----~~v~~e~~~~~ 220 (229)
++|++.|+++++..- -+...|+-+-..+.+ .|..++| .+.+++.-+..
T Consensus 217 ~eAl~~~~~al~l~P-----~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~ 270 (382)
T 2h6f_A 217 DNELQYVDQLLKEDV-----RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270 (382)
T ss_dssp TTHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC
Confidence 999999999998764 477888888888988 6665777 36666554443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00055 Score=49.89 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
...-..+.+.|++++|+..|+...+... -+...|..+=..|.+.|+.++|...|++..+...-+...|..+-..|.+.|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3444556778888888888887765433 356677777778888888888888888776544224567778888888888
Q ss_pred CHHHHHHHHHHHHHc
Q 026993 166 SKESTVRIYGLMKRS 180 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~ 180 (229)
++++|.+.|++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888877653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0004 Score=65.68 Aligned_cols=127 Identities=13% Similarity=0.014 Sum_probs=104.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -|...|..+=..|.+.|++++|...|++..+...-+...|+.+=..|.+.|++
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~ 517 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT 517 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh
Confidence 34456788999999999998876543 46678888888999999999999999997765422567889999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++ .+.|++..+..- -+...|..+-..+.+.|+.++|.+.+++.-+..+
T Consensus 518 ~~-~~~~~~al~~~P-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P 565 (681)
T 2pzi_A 518 DE-HKFYQTVWSTND-----GVISAAFGLARARSAEGDRVGAVRTLDEVPPTSR 565 (681)
T ss_dssp CT-TCHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTST
T ss_pred HH-HHHHHHHHHhCC-----chHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCc
Confidence 99 999999887653 3667888899999999999999999987766544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0042 Score=50.60 Aligned_cols=119 Identities=8% Similarity=-0.103 Sum_probs=91.3
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 026993 89 LRELIR----QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRA 160 (229)
Q Consensus 89 l~~l~~----~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~ 160 (229)
-..+.+ .+++++|+..|+...+. -+...+..|-..|.+ .|++++|...|++..+.+ +...|..|=..
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~ 119 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDL---NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGI 119 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHH
Confidence 344556 88899999888877552 356677778888888 899999999998877664 67788888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 161 VVE----AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 161 ~~~----~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
|.+ .|+.++|.+.|++-.+.+. + ..+..+-..+.. .++.++|.+.+++.-+.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~~-----~--~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLND-----G--DGCTILGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcCc-----H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 888 8899999999988887653 3 455556667777 88999999888876554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0025 Score=53.02 Aligned_cols=132 Identities=9% Similarity=-0.097 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCC--HHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID----GGD--GRGL 154 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g----~pd--~~ty 154 (229)
...+..+...|++++|++.+....+... .++ ...+..+-..|...|++++|...|.+..+.. .+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456778899999999999987765422 011 1234445566788899999999999876432 222 4589
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRS--GVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.+-..|...|++++|.+.|++..+. .... .+ +..+|.-+-..|.+.|++++|.+.+++.-+.
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc--cccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999988631 1100 02 2258888999999999999999999876543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00063 Score=49.59 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHH
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKG 199 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~ 199 (229)
+..+-..+.+.|++++|...|++..+...-+...|..+=..+.+.|+.++|...|++..+..- -+...+..+-..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHH
Confidence 344556788999999999999998765423678888899999999999999999999987652 366788889999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCC
Q 026993 200 LRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+...|+.++|.+.+++.-+..|
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC---
T ss_pred HHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998877644
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00058 Score=61.89 Aligned_cols=129 Identities=8% Similarity=-0.051 Sum_probs=97.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLT--DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~--~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
....+.+.|+.+.|.++|+...+... .+...|- +++ .+.+.|+.++|..+|+...+...-+...|..++..+.+.|
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~-~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALM-EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHH-HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHH-HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCC
Confidence 34445678899999999988765322 2222232 333 2346899999999999876543225789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.++|..+|++....+-. .|+ ...|...+.-....|+.+.+.++++.+.+..|
T Consensus 440 ~~~~Ar~~~~~al~~~~~---~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSL---PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHSCCS---CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CHhhHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999886421 143 55788889988999999999999998887655
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00059 Score=56.00 Aligned_cols=126 Identities=11% Similarity=0.008 Sum_probs=97.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CC-CHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GG-DGRGLSRVV 158 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~p-d~~tyn~lI 158 (229)
-..+.+.|++++|+..|+...+... .| ...|..+-..|...|++++|...|++..+. + .| ...+|..+-
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3456789999999999999876532 23 467889999999999999999999876432 2 11 256889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHH
Q 026993 159 RAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGE--------------------EELANEVER 214 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~--------------------~~~A~~v~~ 214 (229)
..|...|++++|.+.|.+..+..-. .++ ..+|..+-..+...|+ +++|.+.++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRE---LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHH---hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999987543111 023 4488889999999999 999988887
Q ss_pred Hhhh
Q 026993 215 EFCW 218 (229)
Q Consensus 215 e~~~ 218 (229)
+..+
T Consensus 168 ~a~~ 171 (338)
T 3ro2_A 168 ENLS 171 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00041 Score=59.81 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=98.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CC-CHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GG-DGRGLSRV 157 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~p-d~~tyn~l 157 (229)
.-..+.+.|++++|+..|+...+... .|. .+|..+-..|...|++++|...|++..+. + .| ...+|+.+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 34457789999999999999876532 233 47888889999999999999999886543 2 12 34789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHh
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGE-----------------EELANEVEREF 216 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~-----------------~~~A~~v~~e~ 216 (229)
-..|...|++++|.+.|.+..+. +-. .-...+|..+-..+...|+ +++|.+.+++.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDR---LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999987653 221 0235678889999999999 99998888765
Q ss_pred hh
Q 026993 217 CW 218 (229)
Q Consensus 217 ~~ 218 (229)
.+
T Consensus 210 l~ 211 (411)
T 4a1s_A 210 LK 211 (411)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0023 Score=46.86 Aligned_cols=90 Identities=10% Similarity=0.076 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--C-CC----HHHHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--G-GD----GRGLSRVVRAVV 162 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~-pd----~~tyn~lI~~~~ 162 (229)
..+.+.|++++|+..|+...+... -+...|+.+=..|.+.|++++|.+.|++..+.. . ++ ..+|..+=..|.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~ 94 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQ 94 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 346788999999999988765433 467788888899999999999999998865433 1 12 246777777888
Q ss_pred HcCCHHHHHHHHHHHHHc
Q 026993 163 EAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~ 180 (229)
..|++++|++.|++-.+.
T Consensus 95 ~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh
Confidence 999999999999887663
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0011 Score=55.27 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHc-C--CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREY-Q--QQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVV 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~-~--~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI 158 (229)
.+...|++++|+..|....+.. . .+. ..+|+.+-..|.+.|++++|...|++..+.- .|+ ..+|+.+-
T Consensus 124 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHH
Confidence 3567789999999998876431 1 122 4588999999999999999999999876321 233 26899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELA-NEVEREFC 217 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A-~~v~~e~~ 217 (229)
..|.+.|++++|.+.|++-.+. +.. .--..+|..+-..+.+.|+.++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSM---ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBC---SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999986542 221 01267888899999999999999 77676543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0016 Score=54.46 Aligned_cols=131 Identities=8% Similarity=-0.089 Sum_probs=99.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH---cCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC--HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE---YQQQ-D-LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGGD--GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~---~~~p-d-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~pd--~~tyn~l 157 (229)
...+...|++++|+..|....+. ...+ + ..+|+.+-..|.+.|++++|...|++-.+- |.+. ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44567789999999999887543 2212 1 468999999999999999999999875432 2111 3588899
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEA-GSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
=..|.+. |++++|++.|++-.+..-. ..+ ..+|.-+-..+.+.|++++|.+.+++.-+..+.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQ---DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 9999996 9999999999987653110 011 357888999999999999999999988886543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0019 Score=51.77 Aligned_cols=129 Identities=9% Similarity=-0.002 Sum_probs=92.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCH-HHHHHHHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGDG-RGLSRVVRAVVE 163 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd~-~tyn~lI~~~~~ 163 (229)
-..+.+.|++++|+..|+.+.+... .|. ...+..+-.+|.+.|++++|...|++..+.. .+.. ..|-.+-..+.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 3457788999999999999987532 122 3467778899999999999999999987654 2332 133333333333
Q ss_pred ------------------cCCHHHHHHHHHHHHHcCCCCCCCCCHH-HH-----------------HHHHHHHHhcCCHH
Q 026993 164 ------------------AGSKESTVRIYGLMKRSGVGCSWKVDEY-VG-----------------KVLSKGLRRFGEEE 207 (229)
Q Consensus 164 ------------------~g~~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty-----------------~~Li~~~~~~g~~~ 207 (229)
.|+.++|...|++..+.- |+.. .+ -.+-..+.+.|+++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~------P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY------PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTTC------TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC------cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 578999999999998753 4432 11 23455678899999
Q ss_pred HHHHHHHHhhhcCCCC
Q 026993 208 LANEVEREFCWVPGGS 223 (229)
Q Consensus 208 ~A~~v~~e~~~~~~~~ 223 (229)
+|...++++-+..|.+
T Consensus 165 ~A~~~~~~~l~~~p~~ 180 (225)
T 2yhc_A 165 AVVNRVEGMLRDYPDT 180 (225)
T ss_dssp HHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHCcCC
Confidence 9999999888765543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0011 Score=57.22 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=90.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHH----HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQ-----DLGLLTDLINT----LAKNGLTGEVDRLIGELEEIDGGDGRGLSRV 157 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~p-----d~~ty~~LI~~----~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~l 157 (229)
..+..+.+.|+.+.|.+.++.|.+ .. | |-.+-.-|..+ .-..++..+|..+|+++.+. .|+..+-..+
T Consensus 141 l~vqi~L~~~r~d~A~k~l~~~~~-~~-~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~-~p~~~~~~lL 217 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTN-AI-EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT-FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HS-CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT-SCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh-CCCcccHHHH
Confidence 356778899999999999999965 34 6 23444445444 22234999999999999765 4664444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---------CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRSG---------VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~g---------~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+++.+.|++++|.+.++.+.+.- -+ -|.-|..-+|......|+ +|.+++.+++...|.
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p----~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL----YKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS----SHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC----CCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 558999999999999999776530 11 255566455555556787 899999999887653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=52.81 Aligned_cols=102 Identities=11% Similarity=-0.114 Sum_probs=70.8
Q ss_pred cCCHHHHHHHHHHHHHHc--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 95 QGECAVAVHVFSTIQREY--QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~--~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
.|++++|+..|+...+.. . | +...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQG-KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCC-ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 577788888887775431 1 3 35678888888999999999999999887654224678888889999999999999
Q ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Q 026993 172 RIYGLMKRSGVGCSWKVDEYVGKVLSKGL 200 (229)
Q Consensus 172 ~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~ 200 (229)
+.|.+..+..-. .|+...|.-.|..+
T Consensus 82 ~~~~~al~~~p~---~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSD---DETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCC---CHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCC---cHHHHHHHHHHHHH
Confidence 999887765322 14444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0015 Score=58.70 Aligned_cols=117 Identities=14% Similarity=0.061 Sum_probs=94.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD---------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd---------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~t 153 (229)
-..+.+.|++++|+..|+...+... .+ ...|+.+-.+|.+.|++++|...|++..+...-+...
T Consensus 275 G~~~~~~g~~~~A~~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 275 GTVYFKGGKYMQAVIQYGKIVSWLE-MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHT-TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhc-ccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4557789999999999998876432 22 5889999999999999999999999987665336889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
|..+=.+|.+.|++++|...|++..+..- -+...|..+-..+.+.|+.++|.+
T Consensus 354 ~~~~g~a~~~~g~~~~A~~~~~~al~l~P-----~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNP-----QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC---------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987542 245677778888888888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0031 Score=49.12 Aligned_cols=101 Identities=10% Similarity=-0.143 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD--------------GRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd--------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
...+..+=..+.+.|++++|...|++..+.. .|+ ...|..+-..|.+.|++++|.+.|.+..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456666678889999999999999987643 221 278889999999999999999999999876
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.- .+...|..+-..+...|++++|.+.|++..+..+.
T Consensus 118 ~p-----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 118 DK-----NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp ST-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred Cc-----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 42 47788888999999999999999999988776554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00017 Score=51.86 Aligned_cols=88 Identities=10% Similarity=-0.022 Sum_probs=70.0
Q ss_pred hcCCHHHHHHHHHHhhhCC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 129 KNGLTGEVDRLIGELEEID--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~~g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
..|++++|...|++..+.+ .|+ ...|..+-..|.+.|++++|.+.|++..+..- -+..+|..+-..+.+.|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l~~~~~~~g~ 76 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----NHQALRVFYAMVLYNLGR 76 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchHHHHHHHHHHHHcCC
Confidence 4688999999999988764 243 57899999999999999999999999988753 357788889999999999
Q ss_pred HHHHHHHHHHhhhcCC
Q 026993 206 EELANEVEREFCWVPG 221 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~~ 221 (229)
.++|.+.+++.-+..+
T Consensus 77 ~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 77 YEQGVELLLKIIAETS 92 (117)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999987766543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0023 Score=48.22 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHc-----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 90 RELIRQGECAVAVHVFSTIQREY-----------------QQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~-----------------~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
..+.+.|+++.|+..|....+.. . | +...|..+-.+|.+.|++++|...+++..+...-+.
T Consensus 19 ~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~ 97 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNE 97 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcch
Confidence 45678999999999998875530 1 2 346788888999999999999999999876553367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
..|..+-.+|...|++++|.+.|.+-.+..
T Consensus 98 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 98 KALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 899999999999999999999999988753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00098 Score=51.25 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g 165 (229)
..-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|+...+.. |+...+..+-.. +.+.+
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY-QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-CChHHHHHHHHHHHHhhc
Confidence 445567889999999999988754332 356788999999999999999999999876543 444433322111 22333
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
...+|.+.|++..+..- -|...+..+-..+...|+.++|.+.+++.-+..|.
T Consensus 89 ~~~~a~~~~~~al~~~P-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 89 AESPELKRLEQELAANP-----DNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp TSCHHHHHHHHHHHHST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred ccchHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 44568899998887542 25788888999999999999999999988877543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0065 Score=52.20 Aligned_cols=127 Identities=7% Similarity=-0.023 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
-..+...|+++.|+..|....+.+. .++ ..+|+.+=..|...|++++|...|++..+.. .+| ..+|+.
T Consensus 150 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3456678999999999988765421 122 3578888889999999999999998765432 222 258888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GV-GCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~-~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+=..|...|++++|.+.|++-.+. +. . -...++..+-..+.+.|+.++|.+.+++..+.
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILP----SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccch----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988662 33 2 34677888999999999999999999876543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0014 Score=48.02 Aligned_cols=99 Identities=12% Similarity=-0.033 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGK 194 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~ 194 (229)
.|..|=+.|.+.|++++|...|++..+...-+...|+.+=..|.+.|++++|++.|++-.+..-.. .++ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET--RADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc--chhhHHHHHHHH
Confidence 455566788999999999999998776542357899999999999999999999999876532100 022 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-+-..+...|++++|.+.|++.-+.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7788899999999999999876554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0007 Score=56.76 Aligned_cols=124 Identities=14% Similarity=0.064 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLI-NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI-~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g 165 (229)
.+-..+.+.|++++|...++.... .. |+........ ..+.+.|+.++|...|.+..+...-|...+..+-..|...|
T Consensus 156 ~la~~~~~~g~~~~A~~~l~~~~~-~~-p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g 233 (287)
T 3qou_A 156 LLAETLIALNRSEDAEAVLXTIPL-QD-QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVG 233 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTSCG-GG-CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCch-hh-cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 345667789999999999987743 23 6554333322 33677888888999998876654335788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVERE 215 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e 215 (229)
++++|.+.|.+..+..-. ..+...+..|...+...|+.++|...+++
T Consensus 234 ~~~~A~~~l~~~l~~~p~---~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 234 RNEEALELLFGHLRXDLT---AADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp CHHHHHHHHHHHHHHCTT---GGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccc---cccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999999999999876422 13367899999999999999999888875
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0018 Score=54.15 Aligned_cols=92 Identities=10% Similarity=-0.072 Sum_probs=76.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
.-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+...|+.+-.+|.+.|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567789999999999988766433 36788888999999999999999999988765433578899999999999999
Q ss_pred HHHHHHHHHHHHc
Q 026993 168 ESTVRIYGLMKRS 180 (229)
Q Consensus 168 ~~A~~~f~~M~~~ 180 (229)
++|.+.|.+..+.
T Consensus 89 ~~A~~~~~~al~l 101 (281)
T 2c2l_A 89 DEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0029 Score=53.79 Aligned_cols=125 Identities=11% Similarity=0.008 Sum_probs=96.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCC-HHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEI----D-GGD-GRGLSRVVR 159 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~pd-~~tyn~lI~ 159 (229)
..+.+.|++++|+..|+...+... .| ..+|..+-..|...|++++|...|++..+. + .|+ ..+|..+-.
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 456789999999999999876532 23 357888999999999999999999875432 2 222 468889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCCCCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Q 026993 160 AVVEAGSKESTVRIYGLMKRSGVGCSWKVD----EYVGKVLSKGLRRFGE--------------------EELANEVERE 215 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd----~~Ty~~Li~~~~~~g~--------------------~~~A~~v~~e 215 (229)
.|...|++++|.+.|.+..+..-. .+| ..++..+-..+...|+ +++|.+.+++
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRE---LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHh---cccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999987653110 022 4588889999999999 9999988876
Q ss_pred hhh
Q 026993 216 FCW 218 (229)
Q Consensus 216 ~~~ 218 (229)
..+
T Consensus 173 al~ 175 (406)
T 3sf4_A 173 NLS 175 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.003 Score=55.30 Aligned_cols=119 Identities=12% Similarity=0.038 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHH---------------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQRE---------------YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR 152 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~---------------~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~ 152 (229)
.-..+.+.|++++|+..|+...+. ...-+..+|+.+-.+|.+.|++++|...+++..+...-+..
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 345667899999999999887651 11024567888889999999999999999998866533678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANE 211 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~ 211 (229)
.|..+=.+|.+.|++++|.+.|++..+..- -|...+..+-..+.+.++.+++.+
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-----~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEIAP-----EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887642 256666777777777776666644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0022 Score=53.40 Aligned_cols=123 Identities=11% Similarity=0.068 Sum_probs=95.0
Q ss_pred HHhcCCHHHHHHHHHHHHHH-cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----C-C-CCC-HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE-YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE----I-D-GGD-GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~-~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~-g-~pd-~~tyn~lI~ 159 (229)
+...|++++|+..|....+. ....| ..+|+.|-..|.+.|++++|...|++..+ . + .+. ..+|+.+-.
T Consensus 125 ~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 3u3w_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 44567999999999998764 22134 33689999999999999999999998763 1 2 222 348999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHhhh
Q 026993 160 AVVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFG-EEELANEVEREFCW 218 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g-~~~~A~~v~~e~~~ 218 (229)
.|.+.|++++|.+.|++-.+ .+.. +. ..+|..+-..+.+.| ..++|.+.+++.-.
T Consensus 205 ~y~~~~~y~~A~~~~~~al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 205 ALYLDSRYEESLYQVNKAIEISCRINSM----ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBC----TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999999999987654 2322 33 578888999999999 46999888876544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.018 Score=46.73 Aligned_cols=118 Identities=8% Similarity=-0.088 Sum_probs=98.1
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026993 90 RELIR----QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAV 161 (229)
Q Consensus 90 ~~l~~----~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~ 161 (229)
..+.+ .+++++|+..|+...+. -+...+..|=..|.+ .|++++|...|++..+.+ +...+..+=..|
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~ 156 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDL---KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHc---CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence 44556 89999999999887652 366788888889999 999999999999988765 667888888888
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 162 VE----AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 162 ~~----~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
.+ .++.++|++.|++-.+.+. ...+..+-..+.. .++.++|.+.+++.-+.
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~-------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKD-------SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 88 9999999999999888653 3566678888888 99999999999987665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0025 Score=54.72 Aligned_cols=101 Identities=6% Similarity=-0.135 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD----------------GRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd----------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
+...|..+=..|.+.|++++|...|++..+.. |+ ...|+.+-..|.+.|++++|.+.|++..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34568888889999999999999999877654 22 58999999999999999999999999988
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..- -+...|..+-..+...|++++|.+.|++.-+..|.
T Consensus 225 ~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 262 (336)
T 1p5q_A 225 LDS-----NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262 (336)
T ss_dssp HCT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hCC-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence 652 47788999999999999999999999988776554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.004 Score=52.39 Aligned_cols=125 Identities=11% Similarity=-0.087 Sum_probs=90.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--CHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY---QQQD--LGLLTDLINTLAKNGLTGEVDRLIGELEEI----DGG--DGRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~---~~pd--~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g~p--d~~tyn~ 156 (229)
+-..+.+.|++++|+..|+...+.+ .+++ ..+|+.+=..|.+ |++++|...|++-.+. |.+ -..+|+.
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 3455667899999999988765431 1122 3467777778888 9999999999875432 211 1468888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDE-YVGKVLSKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~ 217 (229)
+-..|.+.|++++|++.|++..+. +.. ++. .+|..+...+...|+.++|.+.+++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENY----PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 999999999999999999988653 221 222 356666677777799999999999877
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0019 Score=48.73 Aligned_cols=99 Identities=10% Similarity=-0.118 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEI------------------DGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~------------------g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.+...=..+.+.|++++|...|.+-.+. ..-+...|+.+-.+|.+.|++++|+..|.+..+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4555666888999999999999876543 1112468999999999999999999999999876
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.- -+...|..+-.++...|++++|.+.++..-+..|.
T Consensus 93 ~p-----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~ 129 (162)
T 3rkv_A 93 EE-----TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129 (162)
T ss_dssp ST-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred CC-----cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence 53 46788899999999999999999999987776544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00021 Score=49.81 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
+...|..+-..+.+.|++++|.+.|++..+....+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556677778888888888888888876544235677888888888888888888888888764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0049 Score=51.40 Aligned_cols=56 Identities=7% Similarity=-0.205 Sum_probs=35.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
-..+.+.|++++|+..|+...+... -+...|..+-.+|.+.|++++|...|.+..+
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 45 ALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445566777777777666543222 3455666666777777777777777766544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0014 Score=55.85 Aligned_cols=128 Identities=12% Similarity=-0.095 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH----HHHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG----RGLSRVVRAVV 162 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~----~tyn~lI~~~~ 162 (229)
.....|...|++++|.++|+.+.. .. |+-...-.+-..+.+.|+.++|+..|+.... .||. ..+..+=.++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~-~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~--~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV-AG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK--WPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC-TT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG--CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh-cC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc--cCCcccHHHHHHHHHHHHH
Confidence 345668889999999999977743 22 5443555566689999999999999985543 3432 35666777899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+.|++++|++.|++-...... |. .-..-..-.++.+.|+.++|..+|+++....|.
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~----P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAG----EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTT----TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HCCCHHHHHHHHHHHhcCCCC----ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 999999999999988754332 54 223445677788999999999999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0032 Score=49.90 Aligned_cols=113 Identities=16% Similarity=0.078 Sum_probs=89.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHhhhCCC
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQ-DLGLLTD----------------LINTLAKNGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~p-d~~ty~~----------------LI~~~~k~g~~~~A~~lf~~M~~~g~ 148 (229)
+.--..+.+.|++++|+..|+...+. . | +...|.. +-..|.+.|++++|...|++..+...
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL-N-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 33445677899999999999988663 2 4 3345555 77889999999999999999877653
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
-+...|..+-..|...|++++|.+.|++..+..- -+..+|..+-..+...|+
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-----~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-----DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCHHHHHHHHHHHHHHhH
Confidence 3678999999999999999999999999988652 356777777777765554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.014 Score=50.21 Aligned_cols=127 Identities=12% Similarity=-0.027 Sum_probs=98.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~ 156 (229)
-..+...|+++.|+..+....+.+. .++ ..+|+.+=..|...|++++|.+.|++..+.. .++ ..+|+.
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3456778999999999988765411 122 4567788889999999999999998765421 122 357888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKR----SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|=..|...|++++|.+.|.+-.+ .+.+ -...++..+-..+.+.|+.++|.+.+++..+.
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPD----LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 88999999999999999998765 1332 23678888999999999999999999987765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0011 Score=62.59 Aligned_cols=123 Identities=11% Similarity=0.047 Sum_probs=101.3
Q ss_pred HhcCCHHHHHHHHHHHH--------HHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 93 IRQGECAVAVHVFSTIQ--------REYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 93 ~~~g~~~~A~~vf~~m~--------~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
...|++++|++.|+... +... .+...|..+-..|.+.|++++|...|++..+...-|...|+.+=..|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 57899999999999887 3222 35677888889999999999999999998765433678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
|++++|.+.|++..+..- -+...|..+-..+.+.|++++ .+.|++.-+..+.
T Consensus 481 g~~~~A~~~~~~al~l~P-----~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFP-----GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp TCHHHHHHHHHHHHHHST-----TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred CCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 999999999999987652 256778889999999999999 9998887665544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0023 Score=45.35 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 101 AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 101 A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 4 a~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGT-DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555655544333 467788888899999999999999999887654335678899999999999999999999987654
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh
Q 026993 181 GVGCSWKVDEYVGKVLSKGLRR 202 (229)
Q Consensus 181 g~~~~~~Pd~~Ty~~Li~~~~~ 202 (229)
.-. .++.....-+...+.+
T Consensus 83 ~~~---~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 83 AQS---RGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHH---HTCHHHHHHHHHHHHH
T ss_pred ccc---cccHHHHHHHHHHHHH
Confidence 211 1344555444444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0093 Score=39.54 Aligned_cols=81 Identities=14% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
...|..+-..|.+.|++++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~~~~~l 83 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CCHHHHHHH
Confidence 345666667777888888888888776654322566777777888888888888888887776532 244455544
Q ss_pred HHHHHh
Q 026993 197 SKGLRR 202 (229)
Q Consensus 197 i~~~~~ 202 (229)
-..+.+
T Consensus 84 ~~~~~~ 89 (91)
T 1na3_A 84 GNAKQK 89 (91)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.016 Score=49.32 Aligned_cols=127 Identities=7% Similarity=-0.116 Sum_probs=94.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH--cCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-C--CC-HHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE--YQQQDL----GLLTDLINTLAKNGLTGEVDRLIGELEEI----D-G--GD-GRGLS 155 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~--~~~pd~----~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g-~--pd-~~tyn 155 (229)
..+...|+++.|...+.+.... -. .+. .+++.+-..|...|++++|...+++..+. + . |. ..+++
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 139 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQH-DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 139 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 4456789999999999887654 12 332 33566777888999999999999876542 2 1 32 35677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV--DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P--d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+-..|...|++++|.+.+.+-.+..-.. .+ ...+|..+-..+...|++++|...+++....
T Consensus 140 ~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 140 IRAQLLWAWARLDEAEASARSGIEVLSSY--QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888999999999999999888765320 01 2467888888999999999999999988776
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.035 Score=47.07 Aligned_cols=89 Identities=11% Similarity=-0.031 Sum_probs=48.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH---cCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC----HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQRE---YQQQ----DLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGD----GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~---~~~p----d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd----~~tyn~lI~ 159 (229)
+...|++++|...++...+. ...+ ....++.+-..|...|++++|...+++..... ... ..+|..+-.
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 44566666666666665433 1101 12344445556666666666666666654433 221 235556666
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 026993 160 AVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~ 180 (229)
.+...|++++|.+.+++....
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0039 Score=44.06 Aligned_cols=81 Identities=9% Similarity=-0.093 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 026993 134 GEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVE 213 (229)
Q Consensus 134 ~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~ 213 (229)
++|...|++..+...-+...|..+-..|.+.|++++|.+.|++..+..- -+...|..+-..+...|+.++|.+.+
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-----TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-----CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3577778877665433678999999999999999999999999987653 46778888999999999999999999
Q ss_pred HHhhhc
Q 026993 214 REFCWV 219 (229)
Q Consensus 214 ~e~~~~ 219 (229)
++.-+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0059 Score=54.80 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=75.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--C
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE----YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--G 148 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~----~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~ 148 (229)
+++..+..+.++|++++|+.+++...+. +. |+ ..+++.|...|...|++++|..++.+..+ -| .
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg-~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP-DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC-TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC-ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 4556678888999999999999887643 34 33 35788999999999999999999987653 34 5
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026993 149 GDG-RGLSRVVRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 149 pd~-~tyn~lI~~~~~~g~~~~A~~~f~~M~ 178 (229)
|++ .+|+.|=..|...|++++|..+|++-.
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 554 789999999999999999999998654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.017 Score=49.55 Aligned_cols=125 Identities=10% Similarity=-0.089 Sum_probs=96.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVV 158 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI 158 (229)
.+...|++++|+..|....+... .+| ..+|..+=..|...|++++|...|.+-.+.- .++ ..+++.+=
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34578999999999998865411 133 3578888899999999999999998765432 222 36888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 159 RAVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 159 ~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
..|...|++++|.+.|.+..+. +.. .-...+|..+-..+...|+.++|.+.+++.-+
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQP---QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999887643 221 01124788899999999999999999987766
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.012 Score=49.49 Aligned_cols=126 Identities=10% Similarity=-0.080 Sum_probs=94.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH---cCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCC--HHHHHHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQRE---YQQQ--DLGLLTDLINTLAKNGLTGEVDRLIGELEE----IDGGD--GRGLSRV 157 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~---~~~p--d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g~pd--~~tyn~l 157 (229)
...+...|++++|...|.+..+. ...+ -..+|+.+-..|.+.|++++|...|++-.+ .|.++ ..+|+.+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567789999999999887654 1101 145788899999999999999999986432 23222 3678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 158 VRAVVEAGSKESTVRIYGLMKRS----GVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
=..|.+ |++++|++.|++-.+. |-. + -..+|.-+-..+.+.|++++|.+.+++.-+.
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERL----RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888 9999999999887542 211 1 1467888899999999999999999877654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.006 Score=44.25 Aligned_cols=99 Identities=16% Similarity=-0.019 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCCC
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKRS----GVGCSWK 187 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~----g~~~~~~ 187 (229)
.+|..+-..|...|++++|...|.+..+.. .++ ..+|+.+-..|...|++++|.+.|++..+. +-. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---~ 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---A 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---H
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---H
Confidence 457777788999999999999998865432 122 258889999999999999999999987643 211 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
....++..+-..+...|++++|.+.+++.-+.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11457788888999999999999999876543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=56.11 Aligned_cols=125 Identities=12% Similarity=0.009 Sum_probs=71.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG------------------LLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~------------------ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
..+.+.|++++|+..|....+. . |+.. .|+.+-.+|.+.|++++|...|++..+...-+.
T Consensus 187 ~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 187 NSLFKEEKLEEAMQQYEMAIAY-M-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp HHTCSSSCCHHHHHHHHHHHHH-S-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhcCCHHHHHHHHHHHHHH-h-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 3445688999999999886543 3 4433 788888899999999999999998776543367
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH-HHHHHHHHH-HHhcCCHHHHHHHHHHhhhcCCC
Q 026993 152 RGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE-YVGKVLSKG-LRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 152 ~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~Li~~-~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..|..+-.+|...|++++|.+.|.+..+.. |+. ..+..|-.. ....+..+.+.++++.+-...+.
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYA------PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 899999999999999999999999886542 443 333333333 22345666777888776555443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0074 Score=54.56 Aligned_cols=93 Identities=6% Similarity=-0.192 Sum_probs=79.1
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
.|.+.|++++|.+.|++..+...-+..+|+.+-..|.+.|++++|.+.|++..+..- -+...|..+-..+.+.|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-----TCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCC
Confidence 456789999999999987765423578999999999999999999999999988642 467888999999999999
Q ss_pred HHHHHHHHHHhhhcCCCC
Q 026993 206 EELANEVEREFCWVPGGS 223 (229)
Q Consensus 206 ~~~A~~v~~e~~~~~~~~ 223 (229)
+++|.+.+++.-+..+..
T Consensus 90 ~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999887765443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.018 Score=49.44 Aligned_cols=124 Identities=10% Similarity=-0.029 Sum_probs=94.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVVR 159 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI~ 159 (229)
+...|++++|+..|....+... .+| ..+|+.+-..|...|++++|...+.+-.+.. .++ ..+|+.+=.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 3578999999999998865411 133 4578888889999999999999998755422 122 458888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 160 AVVEAGSKESTVRIYGLMKRS----GVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~~----g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.|...|++++|.+.|.+-.+. |.. .....++..|-..+...|+.++|.+.+++.-+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQND---RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999887542 221 01235777888899999999999999987665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=51.73 Aligned_cols=99 Identities=8% Similarity=-0.111 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEE----------------IDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~----------------~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
.|..+=..|.+.|++++|.+.|++..+ ...-+..+|+.+-..|.+.|++++|.+.|++..+..-
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 466777789999999999999987664 1112457899999999999999999999999987542
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 183 GCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 183 ~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-+...|..+-.++.+.|++++|.+.+++..+..+.
T Consensus 305 -----~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 305 -----SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp -----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 36778888999999999999999999988776554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.013 Score=52.59 Aligned_cols=84 Identities=5% Similarity=-0.068 Sum_probs=58.3
Q ss_pred hcCCHHHHHHHHHHHHHH----cCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC--CCCH-HHHHHH
Q 026993 94 RQGECAVAVHVFSTIQRE----YQQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE-----ID--GGDG-RGLSRV 157 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~----~~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~-----~g--~pd~-~tyn~l 157 (229)
..|++++|+.+++...+. +. |+ ..+|+.|-..|...|++++|..++++..+ -| .|++ .+||.|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFE-DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBC-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccC-hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 456778888887775432 44 33 24677788888888888888888876542 24 4553 578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 026993 158 VRAVVEAGSKESTVRIYGLMK 178 (229)
Q Consensus 158 I~~~~~~g~~~~A~~~f~~M~ 178 (229)
=..|...|++++|..+|++-.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHH
Confidence 888888888888888877643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.018 Score=51.62 Aligned_cols=101 Identities=9% Similarity=-0.121 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-------------GRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
...|..+=..|.+.|++++|...|++..+.. .++ ...|+.+-.+|.+.|++++|++.|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3467778889999999999999999876543 111 5899999999999999999999999998865
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 182 VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 182 ~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
- -+...|.-+-.+|...|++++|.+.|++..+..+.
T Consensus 348 p-----~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 348 S-----ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred C-----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3 46788888999999999999999999988877554
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0066 Score=42.26 Aligned_cols=84 Identities=12% Similarity=-0.039 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
|...|..+-..|.+.|++++|...|++..+...-+...|..+=..|.+.|++++|.+.|++-.+..-. .+|.....-
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE---EGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---HSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc---CCchhHHHH
Confidence 45667777788888888888888888877654224567888888888888888888888876643211 155555554
Q ss_pred HHHHHHh
Q 026993 196 LSKGLRR 202 (229)
Q Consensus 196 Li~~~~~ 202 (229)
+-..+.+
T Consensus 83 l~~~l~~ 89 (100)
T 3ma5_A 83 LQDAKLK 89 (100)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0037 Score=43.22 Aligned_cols=85 Identities=18% Similarity=0.067 Sum_probs=62.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-------HHHHHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-------GRGLSRVVRA 160 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-------~~tyn~lI~~ 160 (229)
.-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+.. |+ ...+..+-.+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 87 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLELA 87 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHH
Confidence 33456789999999999999876544 467889999999999999999999999987654 33 3445555555
Q ss_pred HHHcCCHHHHHHHH
Q 026993 161 VVEAGSKESTVRIY 174 (229)
Q Consensus 161 ~~~~g~~~~A~~~f 174 (229)
+...|+.+.|.+.|
T Consensus 88 ~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 88 QGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHCCCCCSSSS
T ss_pred HHHHHhHhhhHhHH
Confidence 55555555554444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.044 Score=42.54 Aligned_cols=90 Identities=12% Similarity=0.011 Sum_probs=67.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCC--------HH-----HHHHHHHHHHhcCCHHHHHHHHHHhhhC----C--C
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQD--------LG-----LLTDLINTLAKNGLTGEVDRLIGELEEI----D--G 148 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd--------~~-----ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g--~ 148 (229)
.=..+.+.|++++|+..|+...+. . |+ .. .|+.+=.++.+.|++++|...|++-.+. | .
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l-~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEI-S-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-H-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh-C-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334567889999999999887653 2 33 22 7888888888999999998888876554 2 3
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 149 GD-GRGL----SRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 149 pd-~~ty----n~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
|| ...| ...=.++...|++++|+..|++-.+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 54 4577 7777888888889999888887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0085 Score=53.90 Aligned_cols=88 Identities=6% Similarity=-0.064 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHhhh---C--C--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCH-HHHH
Q 026993 129 KNGLTGEVDRLIGELEE---I--D--GGDG-RGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDE-YVGK 194 (229)
Q Consensus 129 k~g~~~~A~~lf~~M~~---~--g--~pd~-~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~-~Ty~ 194 (229)
+.|++++|..++++..+ + | .|++ .++|.|-..|...|++++|..++++..+ .|-. .||. .+|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a~~l~ 386 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY---SLNVASMWL 386 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS---CHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC---ChHHHHHHH
Confidence 35789999999987543 2 2 3443 6999999999999999999999998754 3543 3765 5789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 195 VLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 195 ~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
-|-..|...|+.++|+.++++..++
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHH
Confidence 9999999999999999999866553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.047 Score=35.94 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=57.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
-..+.+.|++++|+..|+...+... .+...|..+-..|.+.|++++|...|++..+...-+...+..+-..+.+.
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 3456788999999999998876443 46778889999999999999999999997765422456666665555543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=53.68 Aligned_cols=91 Identities=15% Similarity=-0.053 Sum_probs=72.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-----C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCH-
Q 026993 125 NTLAKNGLTGEVDRLIGELEEI-----D--GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDE- 190 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~-----g--~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~- 190 (229)
..+-..|++++|..++++..+. | .|+ ..++|.|-..|...|++++|..++++..+ .|-. .|+.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a 393 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN---NAQLG 393 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT---CHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC---CHHHH
Confidence 3466789999999999875432 2 344 36999999999999999999999988653 3543 3665
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 191 YVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 191 ~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+|+-|-..|...|++++|+.++++..+
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999986554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.14 Score=44.11 Aligned_cols=132 Identities=8% Similarity=-0.129 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHc-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhh----CC-CCC-HHH
Q 026993 85 LLAALRELIRQGECAVAVHVFSTIQREY-QQQDLG----LLTDLINTLAKNGLTGEVDRLIGELEE----ID-GGD-GRG 153 (229)
Q Consensus 85 ~~~vl~~l~~~g~~~~A~~vf~~m~~~~-~~pd~~----ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g-~pd-~~t 153 (229)
+..+...+.+.|++++|.+.+....+.. ..++.. +++.+=..+...|+.++|..++.+... .+ .+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3456677889999999999998876541 102221 222222334456899999999987643 23 333 468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRS--GVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~--g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+..|...|...|++++|..++.+.... +..- +|. ..+|..++..|...|++++|..+++....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDD--KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC--STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 889999999999999999999987542 2110 132 45788999999999999999999986654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.021 Score=44.39 Aligned_cols=96 Identities=13% Similarity=-0.042 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-C-C-----CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEEID-G-G-----DG-----RGLSRVVRAVVEAGSKESTVRIYGLMKRS-----GV 182 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~~g-~-p-----d~-----~tyn~lI~~~~~~g~~~~A~~~f~~M~~~-----g~ 182 (229)
+...=..+.+.|++++|...|++-.+-. . | +. ..|+.+=.++.+.|++++|+..|++-++. -+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445567888999999999999866543 1 1 23 38999999999999999999999988775 11
Q ss_pred CCCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 183 GCSWKVDE-YVG----KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 183 ~~~~~Pd~-~Ty----~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. ||. -.| .-.-.++...|++++|.+.|+..-+.
T Consensus 94 ~----pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 N----QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp T----STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C----CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3 654 466 67788999999999999999977665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.02 Score=51.24 Aligned_cols=94 Identities=12% Similarity=-0.139 Sum_probs=74.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC----CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCC
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEID----GGD----GRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVD 189 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~g----~pd----~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd 189 (229)
.|..+.+.|++++|..++++..+.. .|+ ..++|.|...|...|++++|..++.+..+ .|-. .|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~---Hp~ 369 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS---HPV 369 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---CHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---ChH
Confidence 3556778899999999999876431 232 36999999999999999999999998753 3433 366
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 190 E-YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 190 ~-~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. .+|+-|-..|...|++++|..++++..++
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5 67899999999999999999999866553
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.031 Score=48.82 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEI 146 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~ 146 (229)
|+.++|.+.++....... .+...++.+-..|.+.|++++|...|.+..+.
T Consensus 227 ~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp ---CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 456667777766544333 45566777777777777777777777765543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.099 Score=45.54 Aligned_cols=130 Identities=12% Similarity=-0.048 Sum_probs=88.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHhhhCCC
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK-------------------NGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k-------------------~g~~~~A~~lf~~M~~~g~ 148 (229)
+-..+.+.|+++.|+..|....+... -+..+|..+-..|.. .+..++|...|.+..+...
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 331 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Confidence 34556788999999999998866433 345566655444432 2346778888887665443
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE--YVGKVLSK-GLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~--~Ty~~Li~-~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
.+..+|..+-..|.+.|++++|.+.|++..+.... |+. ..+..+-. .....|+.++|.+.+++.-++.+.
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 34567888999999999999999999998876542 221 12222222 234789999999999887666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.015 Score=49.88 Aligned_cols=99 Identities=10% Similarity=-0.064 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGR------------------GLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~------------------tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
..|..+=..|.+.|++++|...|.+.... .|+.. .|+.+-..|.+.|++++|.+.|.+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY-MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH-SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566667788899999999999986543 24433 888999999999999999999999887
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 180 SGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 180 ~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..- -+...|.-+-.++...|++++|.+.|++..+..+.
T Consensus 259 ~~p-----~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 259 EEE-----KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred hCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 642 46788899999999999999999999988776543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.041 Score=52.24 Aligned_cols=135 Identities=10% Similarity=0.008 Sum_probs=98.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH-cC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQRE-YQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~-~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
+..++-..+.|..+.|..+|...++. .. .+.+++..+.|...+ .++.+.|..+|+...+.-.-+...|...+.-..+
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 34455556788999999999998765 22 144555555544322 3559999999998765422256678899998889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.|+.+.|..+|+.-....-. .+-....|...++-=.+.|..+.+.+|.+.+.+..|.+
T Consensus 517 ~~~~~~AR~lferal~~~~~--~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISD--SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSS--TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CCCHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999988765321 00034678888888899999999999999999887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.087 Score=50.00 Aligned_cols=126 Identities=7% Similarity=-0.055 Sum_probs=92.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc----------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY----------QQQD------------LGLLTDLINTLAKNGLTGEVDRLIGELEE 145 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~----------~~pd------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~ 145 (229)
.+.-..+.|+++.|.++|+...+.+ . |+ ..+|...+...-+.|.++.|..+|....+
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455567899999999999886531 2 32 24688888888899999999999999876
Q ss_pred C-C--CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 146 I-D--GGDGRGLSRVVRAVVEA-GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 146 ~-g--~pd~~tyn~lI~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
. + .+.+....+.|- .+. ++.+.|..+|+...+. ++ -+...+...++-+...|+.+.|+.+|+..-...+
T Consensus 463 ~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p----~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 463 LKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FA----TDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp TGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred hcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CC----CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 5 4 333444444444 333 4589999999988775 42 2445557888888899999999999998766543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.064 Score=54.93 Aligned_cols=108 Identities=12% Similarity=-0.055 Sum_probs=68.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
++..+=..|...|++++|...|... ..|..+...|++.|++++|.+.+.+-. |..+|.-+-.+|..
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHHhh
Confidence 3344555566677777777777554 247788888888888888888877652 45666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 026993 164 AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVER 214 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~ 214 (229)
.|.++.|..+.-... -+.-.+.-+++.|.+.|.+++|..+++
T Consensus 1263 ~~Ef~LA~~cgl~Ii---------v~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHIV---------VHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred hhHHHHHHHHHHhhh---------cCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655443221 122334467777777777777777664
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.3 Score=38.41 Aligned_cols=116 Identities=13% Similarity=0.014 Sum_probs=52.5
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cC
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG----LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AG 165 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g----~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g 165 (229)
..++.++|++.|....+. -+...+..|=..|.. | +.++|.+.|.+-.+.| +...++.|=..|.. .+
T Consensus 30 ~~~~~~~A~~~~~~a~~~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~ 103 (212)
T 3rjv_A 30 SSGDYQKAEYWAQKAAAQ---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG--SKSGEIVLARVLVNRQAGAT 103 (212)
T ss_dssp HHTCHHHHHHHHHHHHHT---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCcc
Confidence 345555555555544331 123333333334444 3 5555555555544433 33444444444443 44
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCW 218 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~ 218 (229)
+.++|++.|.+-.+.|.. .-+...+..|-..|.. .++.++|.+.|+..-+
T Consensus 104 d~~~A~~~~~~A~~~~~~---~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSES---DAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp CHHHHHHHHHHHTSSTTS---HHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCC---cchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 555555555555444320 0013344444444444 4455555555554433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.034 Score=38.45 Aligned_cols=65 Identities=9% Similarity=-0.054 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 150 DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 150 d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|...|..+=..|.+.|++++|.+.|++..+..- -+...|..+-..+.+.|++++|.+.+++.-+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-----DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 467888999999999999999999999988653 35568888999999999999999999866543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.12 Score=53.08 Aligned_cols=74 Identities=8% Similarity=0.128 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-+++.+.|++++|++-|..- -|...|.-++..+.+.|++++|.+.+..-.+.. ++....+.+..+|++.+++
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFALAKTNRL 1183 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHHHhhcCH
Confidence 334555566666666655221 344556666666666666666666665433322 1222222355556665555
Q ss_pred H
Q 026993 168 E 168 (229)
Q Consensus 168 ~ 168 (229)
+
T Consensus 1184 e 1184 (1630)
T 1xi4_A 1184 A 1184 (1630)
T ss_pred H
Confidence 5
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.085 Score=45.08 Aligned_cols=31 Identities=10% Similarity=-0.046 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.+......+.+.+.+.|+.++|.++++++.+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 4667888888999999999999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.047 Score=36.95 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLG-LLTDLINTLAKNGLTGEVDRLIGELEEID 147 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~-ty~~LI~~~~k~g~~~~A~~lf~~M~~~g 147 (229)
..+.+.|++++|+..|+...+... .+.. .|..+=..|.+.|++++|...|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345677888888888877765433 3455 67777777888888888888888766544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.07 Score=45.97 Aligned_cols=127 Identities=9% Similarity=0.011 Sum_probs=90.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcC-CCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQ-QQDL---------------GLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD 150 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~-~pd~---------------~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd 150 (229)
-+.+.+.|++++|++.|..+.+... ..|. ..+..|...|.+.|++++|.+.+......- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567789999999999999876421 0111 236788899999999999999998875432 222
Q ss_pred H---HHHHHHHH-HHHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 151 G---RGLSRVVR-AVVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 151 ~---~tyn~lI~-~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
. .....++. .+...|..++|.+++.+... .+.. +. ..++..|.+.+...|++++|.++++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV----FLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC----SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 2 22233333 33356799999999987753 3332 33 457788999999999999999999987765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.018 Score=39.16 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=48.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGR-GLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~-tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
-..+.+.|++++|...|++..+...-+.. .|..+=..|.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34677899999999999998765422456 88889899999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.11 Score=40.32 Aligned_cols=114 Identities=11% Similarity=-0.098 Sum_probs=83.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCC-CHHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL----------TGEVDRLIGELEEIDGG-DGRGLSRVVRA 160 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~----------~~~A~~lf~~M~~~g~p-d~~tyn~lI~~ 160 (229)
..|.+.+++|++.++...+.-. -|...|+.+=.++.+.|+ +++|...|++-.+-. | +...|+.+=.+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a 89 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 4566778889988888766433 366677766667777665 569999999876654 4 46789999999
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 161 VVEAG-----------SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 161 ~~~~g-----------~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+.| ++++|.+.|++-.+.. |+..+|.--+... +.|.++.-++.+.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~------P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ------PDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC------CCCHHHHHHHHHH------HhCHhccCccccc
Confidence 98875 8999999999998753 8888886555433 4566666666665
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.16 Score=47.49 Aligned_cols=85 Identities=9% Similarity=-0.099 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHH
Q 026993 116 DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+...|..|=..+.+.|+++.|.+.|..+.. |..+..-|...|+.+...++-+.....|- |+.
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d--------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----------~~~ 741 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD--------LESLFLLHSSFNNKEGLVTLAKDAETTGK----------FNL 741 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC--------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----------HHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHccC--------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----------hHH
Confidence 445566666666666666666666666542 33444444445555544444333333332 223
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh
Q 026993 196 LSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 196 Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-...+.+.|++++|.+++.++.+
T Consensus 742 A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHcCC
Confidence 34446667888888888776665
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.59 E-value=1.1 Score=39.60 Aligned_cols=48 Identities=4% Similarity=-0.062 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 026993 130 NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKESTVRIYGLMKR 179 (229)
Q Consensus 130 ~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~~A~~~f~~M~~ 179 (229)
.++.++|.+.|.+-.+.| +...+..|-..|.. .++.++|.++|++-.+
T Consensus 200 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG--DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 344444444444433322 23333333333333 3444444444444443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.95 Score=40.00 Aligned_cols=112 Identities=7% Similarity=-0.073 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHH
Q 026993 96 GECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG---LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKE 168 (229)
Q Consensus 96 g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~ 168 (229)
++.++|+..|....+. -+...+..|=..|.+.| +.++|.+.|.+-.+.| +...+..|=..|.. .++.+
T Consensus 310 ~~~~~A~~~~~~a~~~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 5677777666665442 23345555555666555 6677777777766554 55667777777777 67778
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
+|++.|++-.+.|. | ..+..|-..|.+ .++.++|.+.|+...+.
T Consensus 385 ~A~~~~~~A~~~~~-----~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 385 QAAIWMRKAAEQGL-----S--AAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----H--HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 88888877776553 3 344445555555 67888887777765543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=1.2 Score=41.14 Aligned_cols=118 Identities=8% Similarity=-0.068 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG--LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG-SKESTVRIY 174 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g--~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g-~~~~A~~~f 174 (229)
++++++.++.+.+... -+..+|+.=-..+.+.| ++++|.+.++++.+...-|..+|+---..+.+.| ..+++++.+
T Consensus 89 ~~~eL~~~~~~l~~~p-K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 89 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHH
Confidence 8899999999876543 46667877777788888 7799999999999876458899999988889999 899999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------------GEEELANEVEREFCWVPG 221 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------------g~~~~A~~v~~e~~~~~~ 221 (229)
+++.+... -|...|+-.-..+.+. +.+++|.+.+++.-+..|
T Consensus 168 ~~~I~~~p-----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 168 DSLITRNF-----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp HTTTTTTC-----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHCC-----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 99998765 4777777666666553 556788888776655433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.24 Score=38.92 Aligned_cols=107 Identities=11% Similarity=0.033 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 026993 101 AVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAG----SKESTVRIYGL 176 (229)
Q Consensus 101 A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g----~~~~A~~~f~~ 176 (229)
|++.|....+ . -|...+..|=..|...|++++|.+.|.+-.+.| +...++.|=..|.. | +.++|++.|++
T Consensus 5 A~~~~~~aa~--~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAE--A-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHH--C-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 4455555443 1 466677778788888999999999999988766 56677777666777 6 89999999999
Q ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhcC
Q 026993 177 MKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWVP 220 (229)
Q Consensus 177 M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~~ 220 (229)
-.+.|. | ..+..|-..|.. .++.++|.+.+++..+..
T Consensus 79 A~~~g~-----~--~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 119 (212)
T 3rjv_A 79 AVEAGS-----K--SGEIVLARVLVNRQAGATDVAHAITLLQDAARDS 119 (212)
T ss_dssp HHHTTC-----H--HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST
T ss_pred HHHCCC-----H--HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC
Confidence 988775 3 445555556655 889999999999877654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.57 Score=34.34 Aligned_cols=109 Identities=9% Similarity=-0.032 Sum_probs=78.7
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AGSKESTVR 172 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g~~~~A~~ 172 (229)
+.++|++.|..-.+.-. ++.. |=..|...+.+++|.+.|.+-.+.| +...++.|=..|.. .++.++|++
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 56678877777655322 4433 4455666678888999998877765 66777777777777 789999999
Q ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhc
Q 026993 173 IYGLMKRSGVGCSWKVDEYVGKVLSKGLRR----FGEEELANEVEREFCWV 219 (229)
Q Consensus 173 ~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~----~g~~~~A~~v~~e~~~~ 219 (229)
.|++-.+.|. | ..+..|-..|.. .++.++|.+.++...+.
T Consensus 83 ~~~~Aa~~g~-----~--~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLND-----Q--DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTTC-----H--HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCC-----H--HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 9998888775 3 344446666666 78999999998876554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.064 Score=45.51 Aligned_cols=90 Identities=8% Similarity=-0.138 Sum_probs=69.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCH----HHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDE----YVGKVL 196 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~----~Ty~~L 196 (229)
-.....|...|++++|.++|+.+...+ |+....-.+-..+.+.|++++|+..|...... ||. ..+-.|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~-p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~L 177 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG-SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAH 177 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT-CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHH
Confidence 445677889999999999999998654 54435555556899999999999999744321 322 356778
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh
Q 026993 197 SKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-.++.+.|++++|...|++.-.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHhc
Confidence 8899999999999999997753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.65 E-value=1.7 Score=36.89 Aligned_cols=116 Identities=5% Similarity=-0.164 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----Hhc---CCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH-
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTL----AKN---GLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE- 168 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~----~k~---g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~- 168 (229)
.++++++.++.+.+... -+..+|+.=-..+ .+. ++++++..+++.+.+...-|-.+|+---..+.+.|+.+
T Consensus 84 ~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 84 NLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp CHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred cHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 77777877777765422 2333344322222 334 67777888887777655336777777777777777777
Q ss_pred -HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhhh
Q 026993 169 -STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE------EELANEVEREFCW 218 (229)
Q Consensus 169 -~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~------~~~A~~v~~e~~~ 218 (229)
++++.+++|.+... -|-..|+---..+.+.|+ ++++.+.++++-+
T Consensus 163 ~~EL~~~~~~i~~d~-----~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 163 AKELSFVDKVIDTDL-----KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp HHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 77888888877665 366666544444555554 5666666554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.82 Score=40.44 Aligned_cols=92 Identities=11% Similarity=0.062 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCCCCCHH
Q 026993 119 LLTDLINTLAKNG---LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA----GSKESTVRIYGLMKRSGVGCSWKVDEY 191 (229)
Q Consensus 119 ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~----g~~~~A~~~f~~M~~~g~~~~~~Pd~~ 191 (229)
.+..|=..|.+.| +.++|.+.|..-.+.|.++...+..|=..|... ++.++|++.|++.. .|. |+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~-----~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY-----PASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS-----THHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC-----HHHH
Confidence 5666666666666 666677777666665544444444444444333 46666666666655 443 3332
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHhh
Q 026993 192 VGKVL--SKGLRRFGEEELANEVEREFC 217 (229)
Q Consensus 192 Ty~~L--i~~~~~~g~~~~A~~v~~e~~ 217 (229)
..-.. ..+ ...|+.++|.+.|++.-
T Consensus 252 ~~Lg~~~~~~-~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 252 VSLAQLLYDF-PELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHHS-GGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHH
Confidence 22111 111 23566666666665443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=3.1 Score=35.77 Aligned_cols=118 Identities=8% Similarity=-0.073 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNG--LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS-KESTVRIY 174 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g--~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~-~~~A~~~f 174 (229)
+++++.+++.+..... -+..+|+.=-..+.+.| .++++..+++.+.+...-|...|+---..+.+.|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5678888888876544 46677777777777878 48999999999998765588999998888889998 69999999
Q ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhhcCC
Q 026993 175 GLMKRSGVGCSWKVDEYVGKVLSKGLRRF--------------GEEELANEVEREFCWVPG 221 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~--------------g~~~~A~~v~~e~~~~~~ 221 (229)
.++.+... -|...|+-.-..+.+. +.++++.+.++..-...|
T Consensus 169 ~~~I~~~p-----~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 169 DSLITRNF-----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp HHHHHHCS-----CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHCC-----CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC
Confidence 99998876 4776776555555544 456777777776555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.21 Score=38.58 Aligned_cols=92 Identities=9% Similarity=0.005 Sum_probs=71.1
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK----------ESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~----------~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
.-|.+++++|.+.++.-.+...-|...|+.+=.++...|++ ++|+..|++-.+..- -+...|..+
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP-----~~~~A~~~L 86 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc-----CcHHHHHHH
Confidence 34667899999999987765423677888777788887764 599999999887652 256788889
Q ss_pred HHHHHhcC-----------CHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFG-----------EEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g-----------~~~~A~~v~~e~~~~~~~~ 223 (229)
-++|...| ++++|.+.|+..-+..|..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 99998774 8999999999887765543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=93.55 E-value=2 Score=37.74 Aligned_cols=117 Identities=7% Similarity=-0.079 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH----hcC----CHHHHHHHHHHhhhCC--CCCHHHHHHHHHHHHHcC
Q 026993 97 ECAVAVHVFSTIQREYQQQD-LGLLTDLINTLA----KNG----LTGEVDRLIGELEEID--GGDGRGLSRVVRAVVEAG 165 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~----k~g----~~~~A~~lf~~M~~~g--~pd~~tyn~lI~~~~~~g 165 (229)
....|+.+|++..+ .. |+ ...|..+--+|. ..+ ..+....-+....... ..+..+|..+-..+...|
T Consensus 214 ~~~~A~~l~e~Al~-lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQ-SS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 35678888988765 33 54 234443332222 111 1111122222222212 457788888877778889
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 166 SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
++++|.+.+++..... |+...|..+-..+.-.|+.++|.+.+.+..+..|
T Consensus 292 d~d~A~~~l~rAl~Ln------~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE------MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp CHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999874 8888888888999999999999999988777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.49 E-value=1.2 Score=40.07 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHc
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEA 164 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~ 164 (229)
..++-..+.+..+.|..+|+.. +... ..++....+.+...+ .++.+.|..+|+...+.. |+ ...|...|+-..+.
T Consensus 291 ~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~ 367 (493)
T 2uy1_A 291 NHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRI 367 (493)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHc
Confidence 3344445677899999999888 3211 023333334444333 336999999999876543 22 34577788888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 165 GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|+.+.|..+|+.. . -....|...++-=...|+.+.+++++++....
T Consensus 368 ~~~~~aR~l~er~-----~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 368 GDEENARALFKRL-----E----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp TCHHHHHHHHHHS-----C----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999886 2 35677888888777889999999988877653
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=2.4 Score=36.82 Aligned_cols=120 Identities=5% Similarity=-0.216 Sum_probs=92.0
Q ss_pred hcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH--
Q 026993 94 RQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN-G-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE-- 168 (229)
Q Consensus 94 ~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~-g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~-- 168 (229)
..| .+++++++++.+.+... -+..+|+.--..+.+. + +.+++.++++.+.+...-|..+|+---..+.+.|+.+
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~ 178 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI 178 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc
Confidence 345 59999999999876543 4666777766667666 6 8899999999999776448889998777777777777
Q ss_pred ------HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHhhhc
Q 026993 169 ------STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE-------EELANEVEREFCWV 219 (229)
Q Consensus 169 ------~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~-------~~~A~~v~~e~~~~ 219 (229)
++++.+++|.+... -|...|+---..+.+.|+ ++++.+..++.-+.
T Consensus 179 ~~~~~~eELe~~~k~I~~dp-----~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 179 SEAQWGSELDWCNEMLRVDG-----RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL 237 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh
Confidence 99999999999876 488888777777777776 56777766655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=92.93 E-value=3.2 Score=36.58 Aligned_cols=114 Identities=9% Similarity=0.002 Sum_probs=71.1
Q ss_pred HHhcC---CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-H--
Q 026993 92 LIRQG---ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKN----GLTGEVDRLIGELEEIDGGDGRGLSRVVRA-V-- 161 (229)
Q Consensus 92 l~~~g---~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~----g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~-- 161 (229)
+.+.| +.++|++.|....+.-. ++...+..|=..|... ++.++|.+.|.... .| +...++.|=.. |
T Consensus 186 ~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g--~~~a~~~Lg~~~~~~ 261 (452)
T 3e4b_A 186 YQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG--YPASWVSLAQLLYDF 261 (452)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--STHHHHHHHHHHHHS
T ss_pred HHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHhC
Confidence 44567 77778877776655333 4555445555566544 68888888888876 44 33344444443 2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHhh
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-----EEELANEVEREFC 217 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-----~~~~A~~v~~e~~ 217 (229)
...|+.++|++.|.+-.+.|. |+. +..|-..|. .| +.++|.+.|+..-
T Consensus 262 ~~~~d~~~A~~~~~~Aa~~g~-----~~A--~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 262 PELGDVEQMMKYLDNGRAADQ-----PRA--ELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp GGGCCHHHHHHHHHHHHHTTC-----HHH--HHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHCCC-----HHH--HHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 357788888888888877764 333 333434443 45 7778877776544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=4.8 Score=36.94 Aligned_cols=125 Identities=6% Similarity=-0.110 Sum_probs=91.0
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 89 LRELIRQGEC-AVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGL----------TGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 89 l~~l~~~g~~-~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~----------~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
+.++.+.|+. ++|++.++.+.+. . |+ ...|+.==..+.+.|+ +++|.+.++++.+...-+..+|+-
T Consensus 35 ~~~~~~~~~~~eeal~~~~~~l~~-n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~h 112 (567)
T 1dce_A 35 VFQKRQAGELDESVLELTSQILGA-N-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHH 112 (567)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH-C-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3344455554 4679999888663 3 44 3445543333444455 999999999998765236788998
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhcC
Q 026993 157 VVRAVVEAG--SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG-EEELANEVEREFCWVP 220 (229)
Q Consensus 157 lI~~~~~~g--~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g-~~~~A~~v~~e~~~~~ 220 (229)
=-..+-+.| ++++|++.+++|.+... -|-..|+----.+.+.| ..+++.+.++++-+..
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~-----~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~ 174 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN 174 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhcc-----ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC
Confidence 888888999 77999999999998765 57788877777778888 8888888877665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=4.3 Score=34.83 Aligned_cols=120 Identities=7% Similarity=-0.153 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc-----------
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL-TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA----------- 164 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~-~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~----------- 164 (229)
.+++++.+++.+.+... .|-..|+---..+.+.|. .+++.+.++++.+...-|...|+-.-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 125 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------C
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 48899999999987654 577778777777788888 69999999999877655788998887777765
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhcCCC
Q 026993 165 ---GSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF-----------GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 165 ---g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~-----------g~~~~A~~v~~e~~~~~~~ 222 (229)
+.++++++.+.+.....- =|...|+-+--.+.+. +.++++.+.++|+-+..|.
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P-----~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd 270 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDP-----NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE 270 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc
Confidence 568999999999887653 3666666443333333 4578888888888776553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=1.6 Score=33.31 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=44.4
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 115 QDLGLLTDLINTLAKNG---LTGEVDRLIGELEEIDGG---DGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g---~~~~A~~lf~~M~~~g~p---d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
++..+...+=.+|++.+ +++++..+|++..+.+.| ....|+.=+ ||.+.|++++|.+.++...+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv-~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV-GNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH-HHHHTSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH-HHHHccCHHHHHHHHHHHHhc
Confidence 56666666667788877 666888888887665434 124454444 568888888888888888764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.72 E-value=1.6 Score=30.01 Aligned_cols=66 Identities=17% Similarity=0.082 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 116 DLGLLTDLINTLAKNGL---TGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 116 d~~ty~~LI~~~~k~g~---~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
|...+..+-.++...+. .++|..+|++-.+...-++..+..+=..+.+.|++++|++.|.++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 34444444444443332 6788888887665542245666666677788888888888888887654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.94 E-value=2 Score=29.66 Aligned_cols=64 Identities=8% Similarity=-0.093 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 117 LGLLTDLINTLAKNGLTGEVDRLIGELEEI-------DGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 117 ~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~-------g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
...+-.|=..+.+.|+++.|..-|++-.+. |.+....|..|-.+|.+.|++++|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 344556667788899999999988775432 1334678999999999999999999999988875
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=7.4 Score=33.67 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=83.8
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH
Q 026993 87 AALRELIRQGE-CAVAVHVFSTIQREYQQQ-DLGLLTDLINTLAKNG-LTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE 163 (229)
Q Consensus 87 ~vl~~l~~~g~-~~~A~~vf~~m~~~~~~p-d~~ty~~LI~~~~k~g-~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~ 163 (229)
..++++.+.+. -++|+++++.+.+. . | +...||.-=..+...| .++++.++++.+.+...-+..+|+---..+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~-n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRM-N-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHh-C-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33444444444 45789999888663 3 4 3445666556666777 59999999999988763367889988877777
Q ss_pred c-C-CHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhh
Q 026993 164 A-G-SKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEE--------LANEVEREFCW 218 (229)
Q Consensus 164 ~-g-~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~--------~A~~v~~e~~~ 218 (229)
. + +.++++++++++.+..- -|-..|+----.+.+.|..+ ++.+..+++-+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dp-----kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDP-----KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCT-----TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 7 7 89999999999987653 35666654333333444443 56666655544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=1.6 Score=38.19 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCCCCCHHHHHHH
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKR-----SGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~-----~g~~~~~~Pd~~Ty~~L 196 (229)
.++..+.+.|+.++|......+.....-+...|-.+|.+|.+.|+..+|++.|....+ .|+. |...+=...
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~----P~~~l~~l~ 251 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID----PGPTLRALN 251 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----CCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC----CCHHHHHHH
Confidence 4567788899999999988888765444788999999999999999999999988643 5986 988765433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.54 E-value=0.94 Score=42.23 Aligned_cols=111 Identities=12% Similarity=-0.073 Sum_probs=76.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
.+++-+.+.|.+++|+++.+.-.. -.....+.|++++|.++-.++. +...|..|=..+.+.|+
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~~~~~------------~f~~~l~~~~~~~A~~~~~~~~-----~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISPDQDQ------------KFELALKVGQLTLARDLLTDES-----AEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCHHH------------HHHHHHHHTCHHHHHHHHTTCC-----CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCChHHheecCCCcch------------heehhhhcCCHHHHHHHHHhhC-----cHhHHHHHHHHHHHcCC
Confidence 455556677777777754422111 1234567899999999876663 67899999999999999
Q ss_pred HHHHHHHHHHHHHcC-------CCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 167 KESTVRIYGLMKRSG-------VGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g-------~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
++.|.++|..+..-. .. -|.--..-+.+.....|+.+.|...+..+.+
T Consensus 697 ~~~A~~~y~~~~d~~~l~~l~~~~----~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 697 FKLAIEAFTNAHDLESLFLLHSSF----NNKEGLVTLAKDAETTGKFNLAFNAYWIAGD 751 (814)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHccChhhhHHHHHHc----CCHHHHHHHHHHHHHcCchHHHHHHHHHcCC
Confidence 999999999874211 00 1223344567777788888888888865543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.00 E-value=2.2 Score=29.44 Aligned_cols=68 Identities=12% Similarity=0.072 Sum_probs=53.0
Q ss_pred hcHHHHHHHHHhcCCHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCH
Q 026993 83 HDLLAALRELIRQGECAVAVHVFSTIQREY------QQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDG 151 (229)
Q Consensus 83 ~d~~~vl~~l~~~g~~~~A~~vf~~m~~~~------~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~ 151 (229)
.|...+=..+.+.|++..|...|+...+.. ..+...+|..|-.+|.+.|++++|..++++..+. .|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l-~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-DPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC
Confidence 455667777889999999999998876542 1124567899999999999999999999988754 3543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.68 E-value=6.1 Score=30.88 Aligned_cols=52 Identities=13% Similarity=0.120 Sum_probs=30.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
||.-...+.-.|++++++++|. +.|-. |..+.+. ...|--+.|.++..++.-
T Consensus 92 ~n~af~~~l~lGdv~~~i~lL~---~~~r~----~eA~~~A------~t~g~~~~a~~~~~~~~~ 143 (177)
T 3mkq_B 92 FGSMLLNTFYNNSTKERSSIFA---EGGSL----PLAYAVA------KANGDEAAASAFLEQAEV 143 (177)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH---HTTCH----HHHHHHH------HHTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHH---HCCCh----HHHHHHH------HHcCcHHHHHHHHHHhCC
Confidence 5555666667778888877763 33432 4333332 125667778888777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=88.59 E-value=3.2 Score=36.42 Aligned_cols=73 Identities=8% Similarity=-0.131 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGK 194 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~ 194 (229)
.+..+|.++-..+...|++++|...++.....+ |+...|..+=..+.-.|+.++|.+.|.+-.... |...||.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~------P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR------PGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------CSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCcChHH
Confidence 578888888777777899999999999987764 787788777788889999999999998877653 7777875
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=87.63 E-value=4.1 Score=36.61 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 95 QGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 95 ~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.++.+.|..+|+...+.+. -+...+...|+...+.|+.+.|..+|+...+ ....|...+.-=...|..+.+..++
T Consensus 333 ~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~k----~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLEK----TSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC----BHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4479999999999877654 3444567788888999999999999999843 5778999998888899999999999
Q ss_pred HHHHH
Q 026993 175 GLMKR 179 (229)
Q Consensus 175 ~~M~~ 179 (229)
+++..
T Consensus 408 ~~~~~ 412 (493)
T 2uy1_A 408 DQKMD 412 (493)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=5.3 Score=33.97 Aligned_cols=93 Identities=8% Similarity=-0.111 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCCC-C
Q 026993 117 LGLLTDLINTLAK-----NGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVVEA-GSKESTVRIYGLMKRSGVGCSWK-V 188 (229)
Q Consensus 117 ~~ty~~LI~~~~k-----~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~~~-g~~~~A~~~f~~M~~~g~~~~~~-P 188 (229)
-..|+.|-..|.+ .|+.++|.+.|++-.+-+ .-+..++...-..+|+. |+.++|.+.+++-...... . |
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~---~~P 275 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE---SVP 275 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG---GCS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC---CCC
Confidence 4567777777777 477788887777755443 22356666666777774 7777777777777665432 1 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 189 DEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 189 d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+....+ .++-++|+.++.+..+++
T Consensus 276 ~~~lan--------~~~q~eA~~LL~~~~d~F 299 (301)
T 3u64_A 276 HNKLLV--------ILSQKRARWLKAHVQDFF 299 (301)
T ss_dssp SCHHHH--------HHHHHHHHHHHHTHHHHC
T ss_pred ChhHHH--------HHHHHHHHHHHHHhHHhc
Confidence 433222 223346666666665553
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=87.26 E-value=4.4 Score=29.02 Aligned_cols=85 Identities=12% Similarity=-0.068 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026993 97 ECAVAVHVFSTIQREYQQQDLGLLTDLI--NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIY 174 (229)
Q Consensus 97 ~~~~A~~vf~~m~~~~~~pd~~ty~~LI--~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f 174 (229)
.-++|.-|=+++... ++ .--.+|| +.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++...+
T Consensus 22 ~HqEA~tIAdwL~~~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLK---GE-EEAVQLIRLSSLMNRGDYASALQQGNKLA---YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHT---TC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC---CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 344555555555431 33 2233344 46778899999999888776 589999988865 6889999999988
Q ss_pred HHHHHcCCCCCCCCCHHHHHH
Q 026993 175 GLMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 175 ~~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
.+|..+|- |-...|.+
T Consensus 93 ~~la~sg~-----p~~q~Fa~ 108 (116)
T 2p58_C 93 NRLARSQD-----PRIQTFVN 108 (116)
T ss_dssp HHHTTCCC-----HHHHHHHH
T ss_pred HHHHhCCC-----HHHHHHHH
Confidence 89988886 77777653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.97 E-value=6.3 Score=29.98 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCCCC---CHHHHHHHHHHHHhcCCHHH
Q 026993 135 EVDRLIGELEEIDGGDGRGLSRVVRAVVEAG---SKESTVRIYGLMKRSGVGCSWKV---DEYVGKVLSKGLRRFGEEEL 208 (229)
Q Consensus 135 ~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g---~~~~A~~~f~~M~~~g~~~~~~P---d~~Ty~~Li~~~~~~g~~~~ 208 (229)
.+++-|.+..+.|.++..+.-.+=.++++++ +.++|+.+|++..+..- | ...-|+ |--|+.+.|+.++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~-----p~~~rd~lY~-LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS-----KEEQRDYVFY-LAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-----HHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-----ccchHHHHHH-HHHHHHHccCHHH
Confidence 3444444433333334444444444455544 33355555555444331 2 223333 2223345555555
Q ss_pred HHHHHHHhhhcC
Q 026993 209 ANEVEREFCWVP 220 (229)
Q Consensus 209 A~~v~~e~~~~~ 220 (229)
|++.++.+-+..
T Consensus 90 A~~y~~~lL~ie 101 (152)
T 1pc2_A 90 ALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 555555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.10 E-value=4.3 Score=29.05 Aligned_cols=84 Identities=13% Similarity=-0.072 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026993 98 CAVAVHVFSTIQREYQQQDLGLLTDLI--NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYG 175 (229)
Q Consensus 98 ~~~A~~vf~~m~~~~~~pd~~ty~~LI--~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~ 175 (229)
-++|.-|=+++... ++ .--.+|| +.+-..|++++|..+.+.+. .||...|-.|-. .|.|..+++..-+.
T Consensus 22 HqEA~tIAdwL~~~---~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c---~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 22 HEEALCIAEWLERL---GQ-DEAARLIRISSLANQGRYQEALAFAHGNP---WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp HHHHHHHHHHHHHT---TC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC---CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---Cc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC---CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555331 33 2233343 46778899999998877766 589999988865 68999999999998
Q ss_pred HHHHcCCCCCCCCCHHHHHH
Q 026993 176 LMKRSGVGCSWKVDEYVGKV 195 (229)
Q Consensus 176 ~M~~~g~~~~~~Pd~~Ty~~ 195 (229)
+|..+|- |-...|.+
T Consensus 93 ~la~sg~-----p~~q~Fa~ 107 (115)
T 2uwj_G 93 GLGGSSD-----PALADFAA 107 (115)
T ss_dssp HHHTCSS-----HHHHHHHH
T ss_pred HHHhCCC-----HHHHHHHH
Confidence 9998886 77777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=5 Score=34.92 Aligned_cols=61 Identities=10% Similarity=-0.056 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 153 GLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 153 tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
+...++..+...|+.++|........... + -++..|..|+.+|.+.|+..+|.++|+++.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P----~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-P----YREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567888899999999999998887654 2 4889999999999999999999999987766
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=84.48 E-value=9.3 Score=27.48 Aligned_cols=84 Identities=10% Similarity=-0.042 Sum_probs=67.6
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----cC
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----AG 165 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----~g 165 (229)
+.+.++.|++.|..-.+. -+...++.|=..|.. .++.++|.+.|..-.+.| +...+..|=..|.. .+
T Consensus 37 ~g~~~~~A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 37 SQINKQKLFQYLSKACEL---NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TTSCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCC
T ss_pred cCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCc
Confidence 345677788888776542 456677777777877 799999999999988776 67778888888888 89
Q ss_pred CHHHHHHHHHHHHHcCC
Q 026993 166 SKESTVRIYGLMKRSGV 182 (229)
Q Consensus 166 ~~~~A~~~f~~M~~~g~ 182 (229)
+.++|.+.|++-.+.|.
T Consensus 112 d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 112 NEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 99999999999988886
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=82.43 E-value=12 Score=27.56 Aligned_cols=66 Identities=8% Similarity=-0.041 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCC-CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 026993 115 QDLGLLTDLINTLAKNGLTGE---VDRLIGELEEIDGG-DG-RGLSRVVRAVVEAGSKESTVRIYGLMKRS 180 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~---A~~lf~~M~~~g~p-d~-~tyn~lI~~~~~~g~~~~A~~~f~~M~~~ 180 (229)
++..+--.+-.++.+....++ +..+++++...+.| +. ...=.|=-|+.|.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 555555556667777776666 77777777665434 11 22223444677888888888888777764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=81.40 E-value=6.2 Score=33.52 Aligned_cols=100 Identities=8% Similarity=-0.094 Sum_probs=74.0
Q ss_pred CHHHHHHHHH-HHHhc--C------CHHHHHHHHHHhhhCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 026993 116 DLGLLTDLIN-TLAKN--G------LTGEVDRLIGELEEIDGGD---GRGLSRVVRAVVEA-----GSKESTVRIYGLMK 178 (229)
Q Consensus 116 d~~ty~~LI~-~~~k~--g------~~~~A~~lf~~M~~~g~pd---~~tyn~lI~~~~~~-----g~~~~A~~~f~~M~ 178 (229)
+...|..++. .+... | .+.+|..++++..+- .|+ ...|++|-.-|.+. |+.++|.+.|++-.
T Consensus 153 e~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL-DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 153 GTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL-WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 3456776665 33332 2 245566666665443 354 57999999999994 99999999999998
Q ss_pred HcCCCCCCCC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhcCCC
Q 026993 179 RSGVGCSWKV--DEYVGKVLSKGLRRF-GEEELANEVEREFCWVPGG 222 (229)
Q Consensus 179 ~~g~~~~~~P--d~~Ty~~Li~~~~~~-g~~~~A~~v~~e~~~~~~~ 222 (229)
+.. | +.-++...-..++.. |+.++|.+.+++....++.
T Consensus 232 ~Ln------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 232 RYC------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHC------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HhC------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 764 5 367777788999995 9999999999998887554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 229 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.54 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.53 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.25 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.22 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.09 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.05 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.04 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.02 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 97.78 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.75 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.63 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.6 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.59 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.52 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 97.46 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.34 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.33 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.31 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.22 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.17 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.16 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.13 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.06 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.02 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.97 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.91 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.71 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.68 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 96.66 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 95.93 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 95.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 95.89 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.74 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.0 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 93.24 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 93.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 91.96 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 91.1 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 90.23 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 80.31 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=2.5e-06 Score=69.98 Aligned_cols=128 Identities=16% Similarity=0.085 Sum_probs=97.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSK 167 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~ 167 (229)
+-..+.+.|++++|+..|+...+... -+..+|..+-..|.+.|+.++|.+.|+........+...+..+...|.+.|++
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 321 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCH
Confidence 34556678888888888887765332 35667888888888888999998888877654445677888888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 168 ESTVRIYGLMKRSGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 168 ~~A~~~f~~M~~~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
++|.+.|++..+.. | +..+|..+-..+.+.|++++|.+.+++.-+..|.
T Consensus 322 ~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~ 371 (388)
T d1w3ba_ 322 EEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp HHHHHHHHHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999888876542 4 4566777888888899999998888887666443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.7e-06 Score=68.22 Aligned_cols=128 Identities=16% Similarity=-0.017 Sum_probs=105.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
-..+...|++++|+..|........ .+...|..+-..|.+.|++++|...|++..+...-+..+|..+-..|.+.|+.+
T Consensus 210 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 288 (388)
T d1w3ba_ 210 GNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHH
T ss_pred hhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 4456678899999999988766544 567778888889999999999999999877654235678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 169 STVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 169 ~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+|.+.|+......- .+...+..+...+.+.|++++|.+.+++.-+..|.
T Consensus 289 ~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 337 (388)
T d1w3ba_ 289 EAEDCYNTALRLCP-----THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHHHHHHCT-----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHhhhccCC-----ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999988877653 67788889999999999999999999987776544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2e-05 Score=64.16 Aligned_cols=124 Identities=12% Similarity=-0.043 Sum_probs=99.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQRE-YQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~-~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
.+.+.+...+|...|....+. ....+..++..+-..+.+.|++++|...|++......-+...|..+-..|.+.|++++
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 224 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 224 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchh
Confidence 344556677888888776654 1125677888888999999999999999999765542257789999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
|.+.|++..+..- -+...|..|-..|.+.|++++|.+.|++.-+.
T Consensus 225 A~~~~~~al~~~p-----~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 225 AVAAYRRALELQP-----GYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999887531 24567888999999999999999999876664
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.3e-05 Score=57.46 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=89.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
.+.+.|+++.|+..|....+... -+...|..+-..|-+.|++++|...|+...+...-+..+|..+..+|...|++++|
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA 97 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 97 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHH
Confidence 46789999999999998876544 46788999999999999999999999998765433568999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHH
Q 026993 171 VRIYGLMKRSGVGCSWKVD-EYVGKVLSKG--LRRFGEEELANEVE 213 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd-~~Ty~~Li~~--~~~~g~~~~A~~v~ 213 (229)
.+.|.+..+.. |+ ...+..+-.+ +.+.+..++|..+.
T Consensus 98 ~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~~~a~~~~ 137 (159)
T d1a17a_ 98 LRDYETVVKVK------PHDKDAKMKYQECNKIVKQKAFERAIAGD 137 (159)
T ss_dssp HHHHHHHHHHS------TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999998764 43 3333333322 33444455555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=0.00024 Score=57.50 Aligned_cols=127 Identities=10% Similarity=-0.014 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--------------------
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-------------------- 147 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-------------------- 147 (229)
+-..+.+.|+++.|+..|....+... -+...|..+...|.+.|++++|.+.+++.....
T Consensus 59 lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (323)
T d1fcha_ 59 LGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC------------
T ss_pred HHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccc
Confidence 34456677888888888877654322 346677777778888888888888887754321
Q ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 148 -------------------------------GGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 148 -------------------------------~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
..+...|..+-..+.+.|++++|...|++.....- -+..+|..+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~l 212 (323)
T d1fcha_ 138 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-----NDYLLWNKL 212 (323)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred cchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-----ccccchhhh
Confidence 01234455666667777777777777777665432 245566677
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
-..+.+.|++++|.+.++..-+..
T Consensus 213 g~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 213 GATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhcccccccchhHHHHHHHHHHHh
Confidence 777777777777777777665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=4.9e-05 Score=53.87 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=74.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~ 168 (229)
=..+.+.|++++|+..|....+... -+...|+.+=.+|.+.|++++|...|+...+.+..+...|..+-..|...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-cchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3556788999999999988876443 467788888889999999999999999887665446788889999999999999
Q ss_pred HHHHHHHHHHHc
Q 026993 169 STVRIYGLMKRS 180 (229)
Q Consensus 169 ~A~~~f~~M~~~ 180 (229)
+|+..|++-.+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=0.00013 Score=59.76 Aligned_cols=125 Identities=6% Similarity=-0.115 Sum_probs=79.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHH-HHHcCC
Q 026993 89 LRELIRQGECAVAVHVFSTIQREYQQQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRA-VVEAGS 166 (229)
Q Consensus 89 l~~l~~~g~~~~A~~vf~~m~~~~~~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~-~~~~g~ 166 (229)
...+.+.|+.+.|..+|+.+.+... .+ ..+|...+..+-+.|.+++|.++|....+.+..+...|-..... +...|+
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~-~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC
Confidence 4445567788888888777654322 22 34677777777788888888888877766552122333322222 233567
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.+.|..+|+.+.+... -+.-.+...++-+.+.|+++.|+.+|+..-+.
T Consensus 185 ~~~a~~i~e~~l~~~p-----~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 185 KSVAFKIFELGLKKYG-----DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 7778888877776521 34556777777777778888888877765444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=0.00011 Score=51.87 Aligned_cols=94 Identities=12% Similarity=-0.128 Sum_probs=82.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
+.+.+.|++++|..+|++..+...-+...|+.+=.+|.+.|++++|++.|.+..+..- .|...|.-+-..+...|
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----DWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-----chhhHHHHHHHHHHHcc
Confidence 4578899999999999998766534678899999999999999999999999998764 58888999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCC
Q 026993 205 EEELANEVEREFCWVPGGS 223 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.+.++..-+..|.+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~ 104 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANN 104 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTC
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 9999999999988876653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.04 E-value=0.00023 Score=55.64 Aligned_cols=126 Identities=13% Similarity=-0.020 Sum_probs=96.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~ 169 (229)
..+.+.|++++|+..|+...+.-. -+..+|+.+=..|.+.|++++|.+.|++..+...-+..+|..+-..|...|+.++
T Consensus 45 ~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~ 123 (259)
T d1xnfa_ 45 VLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKL 123 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHH
Confidence 356789999999999998876433 3677899999999999999999999999887542245688899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
|.+.|++-.+..- .|......+.-+..+.+..+.+..+........+
T Consensus 124 A~~~~~~al~~~p-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 124 AQDDLLAFYQDDP-----NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhcc-----ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 9999999887653 3555555555566666666666666555554433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=6.1e-05 Score=55.93 Aligned_cols=94 Identities=7% Similarity=-0.177 Sum_probs=81.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFG 204 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g 204 (229)
+.|.+.|++++|...|.+..+...-+...|+.+-..|.+.|++++|.+.|++..+..- -+...|..+...+...|
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-----~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-----KYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-----cchHHHHHHHHHHHHcC
Confidence 3577999999999999998776533678999999999999999999999999987652 46689999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCC
Q 026993 205 EEELANEVEREFCWVPGGS 223 (229)
Q Consensus 205 ~~~~A~~v~~e~~~~~~~~ 223 (229)
++++|.+.+++..+..|.+
T Consensus 93 ~~~eA~~~~~~a~~~~p~~ 111 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHD 111 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHcCCCC
Confidence 9999999999888776543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.81 E-value=0.00026 Score=53.32 Aligned_cols=88 Identities=10% Similarity=-0.046 Sum_probs=75.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHcCCHH
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGG-DGRGLSRVVRAVVEAGSKE 168 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~p-d~~tyn~lI~~~~~~g~~~ 168 (229)
..+.+.|++++|+..|....+.-. -+...|+.+=.+|.+.|++++|...|+...+.. | +..+|..+=.+|.+.|+++
T Consensus 12 n~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~l~~~~ 89 (201)
T d2c2la1 12 NRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYD 89 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHH
Confidence 357789999999999988765433 467789999999999999999999999987653 4 4779999999999999999
Q ss_pred HHHHHHHHHHH
Q 026993 169 STVRIYGLMKR 179 (229)
Q Consensus 169 ~A~~~f~~M~~ 179 (229)
+|+..|++..+
T Consensus 90 ~A~~~~~~al~ 100 (201)
T d2c2la1 90 EAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997754
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=0.00065 Score=52.05 Aligned_cols=124 Identities=10% Similarity=-0.098 Sum_probs=95.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTV 171 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~ 171 (229)
+...|+++.|++.|..+. . |+..+|..+=..|.+.|++++|.+.|++-.+...-+...|+.+=..|.+.|++++|.
T Consensus 15 ~~~~~d~~~Al~~~~~i~---~-~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ---D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS---S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC---C-CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 467899999999997653 3 788888888899999999999999999977655335789999999999999999999
Q ss_pred HHHHHHHHcCCCCC----------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 172 RIYGLMKRSGVGCS----------WKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 172 ~~f~~M~~~g~~~~----------~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+.|++-....-... .+++ ..++.-+-..+.+.|++++|.+.+.+..+.
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988764211000 0011 234444666788999999999999877665
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.78 E-value=0.00027 Score=49.42 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=63.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS 166 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~ 166 (229)
..-..+.+.|++++|+..|+...+... -+...|..+-..|.+.|++++|...|++..+...-+...|..|-..|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 333456677888888888877765332 2566777777788888888888888877665432246777778888888888
Q ss_pred HHHHHHHHHHH
Q 026993 167 KESTVRIYGLM 177 (229)
Q Consensus 167 ~~~A~~~f~~M 177 (229)
.++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.75 E-value=0.00042 Score=52.12 Aligned_cols=99 Identities=8% Similarity=-0.153 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCC-CHHHH
Q 026993 115 QDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKV-DEYVG 193 (229)
Q Consensus 115 pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~P-d~~Ty 193 (229)
|+.-.....=+.|.+.|++++|...|.+..+...-+...|+.+=.+|.+.|++++|+..|.+..+.. | +..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~------p~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD------GQSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC------TTCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC------CCcHHHH
Confidence 4444444444678999999999999998766543367889999999999999999999999987643 5 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 194 KVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 194 ~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
.-+-..+.+.|++++|.+.|+...+.
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88999999999999999999976554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=0.00075 Score=54.97 Aligned_cols=133 Identities=7% Similarity=-0.058 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHc
Q 026993 86 LAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINT-LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEA 164 (229)
Q Consensus 86 ~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~-~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~ 164 (229)
...+..+.+.|..+.|.++|+...+... .+...|...... +...|+.+.|..+|+.+.+...-+...|...+..+.+.
T Consensus 138 ~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~ 216 (308)
T d2onda1 138 IQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence 3456667788999999999998876433 233334333333 34468999999999998865433578999999999999
Q ss_pred CCHHHHHHHHHHHHHcC-CCCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 165 GSKESTVRIYGLMKRSG-VGCSWKVD--EYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 165 g~~~~A~~~f~~M~~~g-~~~~~~Pd--~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
|+++.|..+|++-.... .. |+ ...|...+.--...|+.+.+.++++.+.+..+..
T Consensus 217 g~~~~aR~~fe~ai~~~~~~----~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 217 NEDNNTRVLFERVLTSGSLP----PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSC----GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred CChHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 99999999999977643 33 54 4678888888788999999999999888766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.00058 Score=56.32 Aligned_cols=125 Identities=8% Similarity=-0.047 Sum_probs=97.4
Q ss_pred HHhcC-CHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 026993 92 LIRQG-ECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKEST 170 (229)
Q Consensus 92 l~~~g-~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A 170 (229)
+...| ++++|+..++...+.-. -+..+|+.+=..+.+.|++++|...|+++.+...-+...|+.+-..+.+.|++++|
T Consensus 87 l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~A 165 (315)
T d2h6fa1 87 LKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 165 (315)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHH
Confidence 44445 58999999988866433 45778998888999999999999999998876534688999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHhhhcCCC
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE------EELANEVEREFCWVPGG 222 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~------~~~A~~v~~e~~~~~~~ 222 (229)
.+.|++..+... -|...|+-+-..+.+.+. .++|.+.+...-+..|.
T Consensus 166 l~~~~~al~~~p-----~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~ 218 (315)
T d2h6fa1 166 LQYVDQLLKEDV-----RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 218 (315)
T ss_dssp HHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHCC-----ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC
Confidence 999999998764 366677766666666665 56777777776666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.0022 Score=52.59 Aligned_cols=123 Identities=7% Similarity=-0.101 Sum_probs=93.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCC---
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGS--- 166 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~--- 166 (229)
..+.+.|++++|+..|+.+.+... -|...|+.+-..|.+.|++++|...|+...+...-|...|+.+-..+.+.|.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 345567899999999998876443 4688899999999999999999999999887653367788877666666665
Q ss_pred ---HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 167 ---KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 167 ---~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+++|++.+.+..+..- -|...|.-+... ......+++.+.++...+.
T Consensus 199 ~~~~~~ai~~~~~al~~~P-----~~~~~~~~l~~l-l~~~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVP-----HNESAWNYLKGI-LQDRGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHHST-----TCHHHHHHHHHH-HTTTCGGGCHHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCC-----CchHHHHHHHHH-HHhcChHHHHHHHHHHHHh
Confidence 5789999988887652 367777776554 4555678888888777654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.00046 Score=49.37 Aligned_cols=104 Identities=12% Similarity=0.009 Sum_probs=78.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHhhhCC-CCCH-HHHHHHHHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTG---EVDRLIGELEEID-GGDG-RGLSRVVRAV 161 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~---~A~~lf~~M~~~g-~pd~-~tyn~lI~~~ 161 (229)
.++..+...++++.|.+.|+...+.-. .+..++..+=.+|.+.++.+ +|..+|++..+.+ .|+. .+|..|=.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 566778888899999999988766433 46678888888888766554 5999999987765 4442 4777788889
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 162 VEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 162 ~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
.+.|++++|.+.|++..+.. |+..-...+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~------P~~~~A~~l~ 112 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE------PQNNQAKELE 112 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC------TTCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHhC------cCCHHHHHHH
Confidence 99999999999999998753 7655444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00016 Score=51.99 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCCCCCH-HHHHHH
Q 026993 121 TDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKE---STVRIYGLMKRSGVGCSWKVDE-YVGKVL 196 (229)
Q Consensus 121 ~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~---~A~~~f~~M~~~g~~~~~~Pd~-~Ty~~L 196 (229)
..|++.+...+++++|++.|....+.+..+..++..+=.++.+.++.+ +|+++|++..+..-. |+. -+|.-|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~----~~~~~~~~~L 78 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK----EEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH----HHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC----chHHHHHHHH
Confidence 357888889999999999999988766456788888888888876654 699999998876532 442 366678
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 197 SKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 197 i~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-.+|.+.|++++|.+.|+.+-+..|..
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~ 105 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQN 105 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCC
Confidence 899999999999999999988876654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.59 E-value=0.00043 Score=48.34 Aligned_cols=88 Identities=9% Similarity=-0.064 Sum_probs=75.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhc
Q 026993 124 INTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRF 203 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~ 203 (229)
=..+-+.|++++|...|++..+...-+...|..+-..|.+.|++++|...|++..+..- -+...|..|-..+...
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-----KDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccccc-----ccccchHHHHHHHHHC
Confidence 34578899999999999998776522578999999999999999999999999887642 4678889999999999
Q ss_pred CCHHHHHHHHHHh
Q 026993 204 GEEELANEVEREF 216 (229)
Q Consensus 204 g~~~~A~~v~~e~ 216 (229)
|+.++|.+.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999999999864
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.52 E-value=0.0012 Score=50.23 Aligned_cols=100 Identities=14% Similarity=0.077 Sum_probs=78.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-C--CC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-Q--QD------------------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDG 148 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~--pd------------------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~ 148 (229)
..+...|++++|.+.|..-..-+. . +| +..+..+...+.+.|+.++|...++...+...
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P 98 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 98 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 456678888888888777554211 0 11 13567788999999999999999999887654
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HcCCCCCCCCCHHHH
Q 026993 149 GDGRGLSRVVRAVVEAGSKESTVRIYGLMK-----RSGVGCSWKVDEYVG 193 (229)
Q Consensus 149 pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~-----~~g~~~~~~Pd~~Ty 193 (229)
-|...|..++.+|.+.|+.++|++.|++.. +.|+. |...|-
T Consensus 99 ~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~----P~~~l~ 144 (179)
T d2ff4a2 99 YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID----PGPTLR 144 (179)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC----CCHHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----cCHHHH
Confidence 478999999999999999999999999874 46986 987663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=97.46 E-value=0.0013 Score=51.02 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 118 GLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 118 ~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
.+|..+=..|-+.|++++|...|++..+...-+..+|+.+=..|.+.|++++|.+.|++..+..- -+..+|..+-
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~~~a~~~lg 112 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-----TYNYAHLNRG 112 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh-----hhhhhHHHHH
Confidence 35555667899999999999999997765422578999999999999999999999999988642 2456788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 198 KGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 198 ~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
..+...|+.++|.+.++..-+..+
T Consensus 113 ~~~~~~g~~~~A~~~~~~al~~~p 136 (259)
T d1xnfa_ 113 IALYYGGRDKLAQDDLLAFYQDDP 136 (259)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhHHHHHHHHHHHHhhcc
Confidence 999999999999999998766544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.0018 Score=46.08 Aligned_cols=89 Identities=8% Similarity=0.173 Sum_probs=71.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC-----HHHHHHHHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD-----GRGLSRVVRAVVE 163 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd-----~~tyn~lI~~~~~ 163 (229)
.+.+.|++++|+..|....+... .|...|..+=.+|.+.|++++|...|++..+-. .++ ..+|..+=..+..
T Consensus 13 ~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~ 91 (128)
T d1elra_ 13 DAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK 91 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999998876544 568889999999999999999999999876543 222 2477777788889
Q ss_pred cCCHHHHHHHHHHHHHc
Q 026993 164 AGSKESTVRIYGLMKRS 180 (229)
Q Consensus 164 ~g~~~~A~~~f~~M~~~ 180 (229)
.+++++|++.|.+-...
T Consensus 92 ~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 92 EEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhc
Confidence 99999999999876543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0057 Score=45.47 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=74.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcC-CC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQ-QQ-------------DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~-~p-------------d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
.+.+.|++++|+..|....+.+. .+ -..+|+.+-.+|.+.|++++|...+++..+...-+..+|.-
T Consensus 22 ~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~ 101 (170)
T d1p5qa1 22 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSR 101 (170)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHH
Confidence 46788999999999988765411 01 13567777888999999999999999877654337889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
+-.+|...|++++|...|++..+..
T Consensus 102 ~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 102 RGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.33 E-value=0.00021 Score=58.15 Aligned_cols=126 Identities=13% Similarity=0.053 Sum_probs=85.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKES 169 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~ 169 (229)
...++|++++|+..++...+... -|...+..+...||..|+.++|...|+...+.. |+ ...+..+-..+...+..++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence 34578999999999988876443 578899999999999999999999999987653 44 4455555444444333333
Q ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 170 TVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 170 A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
+..-+..-...+-. ++...+-.....+.+.|+.++|.+.++++.+..+.
T Consensus 83 a~~~~~~~~~~~~p----~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 83 FAQGAATAKVLGEN----EELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp HTTSCCCEECCCSC----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHhhhhhcccCc----hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 32211111111211 33455555667788899999999999988776443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=0.0011 Score=47.15 Aligned_cols=91 Identities=9% Similarity=-0.052 Sum_probs=74.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC-----HHHHHHHHHH
Q 026993 125 NTLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD-----EYVGKVLSKG 199 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd-----~~Ty~~Li~~ 199 (229)
+.|.+.|++++|...|.+..+.+.-+..+|..+=..|.+.|++++|.+.|++.++..-. .++ ..+|..+-..
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~---~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE---NREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHHHH
Confidence 46889999999999999987765346889999999999999999999999998763211 022 3578888899
Q ss_pred HHhcCCHHHHHHHHHHhhh
Q 026993 200 LRRFGEEELANEVEREFCW 218 (229)
Q Consensus 200 ~~~~g~~~~A~~v~~e~~~ 218 (229)
+...+++++|.+.|+..-.
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 9999999999999976543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.25 E-value=0.0065 Score=44.31 Aligned_cols=91 Identities=14% Similarity=0.069 Sum_probs=69.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHHc--C--CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQREY--Q--QQD-----------LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLS 155 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~~--~--~pd-----------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn 155 (229)
.+.+.|++.+|+..|....+.+ . ..+ ..+|+.+-.+|.+.|++++|.+.+++..+...-++.+|.
T Consensus 26 ~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~ 105 (153)
T d2fbna1 26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY 105 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhH
Confidence 4678899999999998876531 1 011 246677778888899999999999887665434678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 156 RVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 156 ~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.+-.+|...|++++|+..|.+-.+..
T Consensus 106 ~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 106 KLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999998877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.22 E-value=0.0048 Score=45.09 Aligned_cols=95 Identities=12% Similarity=-0.123 Sum_probs=77.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCC-----CCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCC
Q 026993 124 INTLAKNGLTGEVDRLIGELEEID-----GGD-----------GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWK 187 (229)
Q Consensus 124 I~~~~k~g~~~~A~~lf~~M~~~g-----~pd-----------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~ 187 (229)
=+.+.+.|++++|...|.+....- .++ ..+|+.+-..|.+.|++++|++.+.+..+..-
T Consensus 24 G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p----- 98 (153)
T d2fbna1 24 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK----- 98 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc-----
Confidence 346778999999999998755321 222 24778888999999999999999999887642
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 188 VDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 188 Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
-+.-+|--+-.++...|++++|...|+...+..|..
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 488999999999999999999999999988876654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.17 E-value=0.0048 Score=46.71 Aligned_cols=89 Identities=11% Similarity=-0.055 Sum_probs=74.5
Q ss_pred HHHHhcCCHHHHHHHHHHhhh--CC--CCCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 026993 125 NTLAKNGLTGEVDRLIGELEE--ID--GGDG------------------RGLSRVVRAVVEAGSKESTVRIYGLMKRSGV 182 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~--~g--~pd~------------------~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~ 182 (229)
..+...|+.++|...|.+-.. +| .+|. ..+..+...+.+.|++++|++.++...+..-
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P 98 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP 98 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 467889999999999987554 23 2221 4688999999999999999999999987653
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 183 GCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 183 ~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
-|.-.|..++.+|.+.|+.++|.+.|+++.+
T Consensus 99 -----~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 99 -----YREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred -----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4889999999999999999999999998755
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.0041 Score=46.28 Aligned_cols=93 Identities=6% Similarity=-0.127 Sum_probs=75.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCC--CCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCC
Q 026993 125 NTLAKNGLTGEVDRLIGELEEID--GGD-------------GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVD 189 (229)
Q Consensus 125 ~~~~k~g~~~~A~~lf~~M~~~g--~pd-------------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd 189 (229)
+.|.+.|++++|...|.+....- .++ ..+|+.+-..|.+.|++++|++.+++-++..- -+
T Consensus 21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-----~~ 95 (170)
T d1p5qa1 21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-----NN 95 (170)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-----cc
Confidence 46888999999999998765321 111 25677788889999999999999999887642 37
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 190 EYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 190 ~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
...|.-+-.++...|++++|.+.|++..+..|.
T Consensus 96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 96 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 888899999999999999999999998876553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.13 E-value=0.02 Score=42.13 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=85.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHH--cC-CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHHHHH
Q 026993 91 ELIRQGECAVAVHVFSTIQRE--YQ-QQ-----------DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRGLSR 156 (229)
Q Consensus 91 ~l~~~g~~~~A~~vf~~m~~~--~~-~p-----------d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~ 156 (229)
.+.+.|++.+|+..|...... .. .. ...+|+.+=.+|.+.|++++|...+++..+....+..+|..
T Consensus 24 ~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~ 103 (168)
T d1kt1a1 24 VYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYR 103 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHH
Confidence 477899999999999876542 11 01 12346666678999999999999999987655446889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHH-HHHHHHHHHHhcCCHH-HHHHHHHHhhh
Q 026993 157 VVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEY-VGKVLSKGLRRFGEEE-LANEVEREFCW 218 (229)
Q Consensus 157 lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~-Ty~~Li~~~~~~g~~~-~A~~v~~e~~~ 218 (229)
+-.+|...|++++|.+.|.+..+.. |+.. ....+-....+.+... ...+++..|-+
T Consensus 104 ~~~~~~~l~~~~~A~~~~~~al~l~------P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 104 RGEAQLLMNEFESAKGDFEKVLEVN------PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999999999999999998753 5444 3333333333343333 34555554433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.018 Score=45.06 Aligned_cols=126 Identities=13% Similarity=0.009 Sum_probs=84.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCC----HHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQD-----LGLLTDLINTLAKNGLTGEVDRLIGELEEID--GGD----GRGLSRVVRA 160 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd-----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g--~pd----~~tyn~lI~~ 160 (229)
+...|++++|+++|+...+... .+ ...++.+-..|...|++++|...|.+..+.. .++ ..++..+-..
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~-~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCc-CCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 4578888888888887655322 11 3456667778888889999888888765432 222 2466777778
Q ss_pred HHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 161 VVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 161 ~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+...|+++.|.+.+.+... .+... .+. ...+..+-..+...|+++.|...+.+..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~ 163 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQ--LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL 163 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTT--STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccch--hhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 8888888888888876543 22210 022 2355566677788888888888887766643
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.02 E-value=0.011 Score=43.49 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=71.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH---------------cCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE---------------YQQQ-DLGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGDGRG 153 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~---------------~~~p-d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd~~t 153 (229)
..+.+.|++..|++.|.+..+. .. | +...|+.+=.+|.+.|++++|...|++..+...-+...
T Consensus 35 ~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a 113 (169)
T d1ihga1 35 NTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 113 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhC-hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhH
Confidence 3466788888888888765321 11 2 34456777788999999999999999987765336789
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 154 LSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 154 yn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
|..+=.+|.+.|++++|.+.|.+..+..
T Consensus 114 ~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 114 LYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=0.0057 Score=46.45 Aligned_cols=86 Identities=6% Similarity=-0.205 Sum_probs=73.3
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 126 TLAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 126 ~~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
.+...|++++|.+.|.++. .|+..+|..+=..|.+.|++++|.+.|++-++..- -+...|.-+-..+.+.|+
T Consensus 14 ~~~~~~d~~~Al~~~~~i~---~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-----~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-----HLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTTC
T ss_pred HHHHCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-----hhhhhHHHHHHHHHhhcc
Confidence 4677899999999998764 36778898898999999999999999999987653 467788889999999999
Q ss_pred HHHHHHHHHHhhhc
Q 026993 206 EELANEVEREFCWV 219 (229)
Q Consensus 206 ~~~A~~v~~e~~~~ 219 (229)
.++|.+.|+..-..
T Consensus 86 ~~~A~~~~~kAl~~ 99 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.021 Score=45.52 Aligned_cols=129 Identities=7% Similarity=-0.090 Sum_probs=94.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHc-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC--CCHHHHHH
Q 026993 88 ALRELIRQGECAVAVHVFSTIQREY-QQQD----LGLLTDLINTLAKNGLTGEVDRLIGELEE----IDG--GDGRGLSR 156 (229)
Q Consensus 88 vl~~l~~~g~~~~A~~vf~~m~~~~-~~pd----~~ty~~LI~~~~k~g~~~~A~~lf~~M~~----~g~--pd~~tyn~ 156 (229)
.-..+...|++++|.+.|....+-+ ...| ..+|+.+-.+|-+.|++++|.+.+++..+ .|. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3445667899999999998876531 1022 35788889999999999999999986443 221 12456667
Q ss_pred HHHHHHH-cCCHHHHHHHHHHHHH----cCCCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 157 VVRAVVE-AGSKESTVRIYGLMKR----SGVGCSWKV-DEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 157 lI~~~~~-~g~~~~A~~~f~~M~~----~g~~~~~~P-d~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
+-..|-. .|++++|.+.|.+..+ .+-. + -..+|.-+...+.+.|++++|.+++++..+..
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~----~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~ 188 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSV----ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch----hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence 7767755 5999999999987643 2321 2 13567888999999999999999999887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.71 E-value=0.051 Score=43.11 Aligned_cols=135 Identities=10% Similarity=-0.048 Sum_probs=89.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcC-CCC----HHHHHHHHHHHHh-cCCHHHHHHHHHHhhh----CCC-CC-HHHH
Q 026993 87 AALRELIRQGECAVAVHVFSTIQREYQ-QQD----LGLLTDLINTLAK-NGLTGEVDRLIGELEE----IDG-GD-GRGL 154 (229)
Q Consensus 87 ~vl~~l~~~g~~~~A~~vf~~m~~~~~-~pd----~~ty~~LI~~~~k-~g~~~~A~~lf~~M~~----~g~-pd-~~ty 154 (229)
.+-..+.+.|++++|++.++...+-+. ..+ ..++..+-..|-+ .|++++|.+.+.+..+ .+. +. ..+|
T Consensus 82 ~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~ 161 (290)
T d1qqea_ 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHH
Confidence 345567789999999999987654411 012 3455556666644 6999999999987542 221 11 3578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 026993 155 SRVVRAVVEAGSKESTVRIYGLMKRSGVGCSW-KVDEY-VGKVLSKGLRRFGEEELANEVEREFCWVPG 221 (229)
Q Consensus 155 n~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~-~Pd~~-Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~ 221 (229)
+.+...|.+.|++++|.+.|++.....-.... ..... .|..++-.+...|+.+.|.+.+++..+..+
T Consensus 162 ~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~ 230 (290)
T d1qqea_ 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 89999999999999999999998764321000 01111 122334455678999999999998877643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.68 E-value=0.022 Score=41.24 Aligned_cols=98 Identities=13% Similarity=-0.040 Sum_probs=69.4
Q ss_pred HHHHH--HHHHHhcCCHHHHHHHHHHhhhCC--CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 026993 119 LLTDL--INTLAKNGLTGEVDRLIGELEEID--GGD----------GRGLSRVVRAVVEAGSKESTVRIYGLMKRS---- 180 (229)
Q Consensus 119 ty~~L--I~~~~k~g~~~~A~~lf~~M~~~g--~pd----------~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~---- 180 (229)
+|..+ -..+.+.|++++|...|++-.+-. .|+ ..+|+.+=.+|.+.|++++|++.+.+..+.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 445667788888888888754322 232 368889999999999999999999887642
Q ss_pred CCCCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 026993 181 GVGCSWKVDE-----YVGKVLSKGLRRFGEEELANEVEREFCWV 219 (229)
Q Consensus 181 g~~~~~~Pd~-----~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~ 219 (229)
+-. .++. ..|.-+-..|...|+.++|.+.|++.-+.
T Consensus 89 ~~~---~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 89 GEL---NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp CCT---TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccc---cccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1322 24566778999999999999999865543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.66 E-value=0.017 Score=42.37 Aligned_cols=95 Identities=7% Similarity=-0.130 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--------------C-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCC
Q 026993 123 LINTLAKNGLTGEVDRLIGELEEI--------------D-GG-DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSW 186 (229)
Q Consensus 123 LI~~~~k~g~~~~A~~lf~~M~~~--------------g-~p-d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~ 186 (229)
.-..+.+.|++++|.+.|.+..+. - .| +...|+.+=..|.+.|++++|+..|.+..+..-
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p---- 108 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP---- 108 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh----
Confidence 344567788888888888665321 0 11 345677787889999999999999999987642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 187 KVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 187 ~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
-+...|.-+-.++.+.|++++|.+.|+...+..|.
T Consensus 109 -~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~ 143 (169)
T d1ihga1 109 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 143 (169)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 47788899999999999999999999988877554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.18 E-value=0.027 Score=41.36 Aligned_cols=99 Identities=10% Similarity=-0.081 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh---CC-CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 026993 120 LTDLINTLAKNGLTGEVDRLIGELEE---ID-GG-----------DGRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGC 184 (229)
Q Consensus 120 y~~LI~~~~k~g~~~~A~~lf~~M~~---~g-~p-----------d~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~ 184 (229)
+...=+.+.+.|++++|...|.+-.. .. .. ....|+.+=.+|.+.|++++|++.+++..+..-
T Consensus 18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p-- 95 (168)
T d1kt1a1 18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS-- 95 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc--
Confidence 33444578889999999999876432 11 11 114566677788999999999999999887642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 026993 185 SWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVPGGS 223 (229)
Q Consensus 185 ~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~~~~ 223 (229)
.+.-.|--+-.++...|++++|.+.|++.-...|..
T Consensus 96 ---~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 96 ---ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred ---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 577888889999999999999999999988876654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=95.93 E-value=0.09 Score=37.76 Aligned_cols=90 Identities=11% Similarity=-0.041 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHcC-CCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C--CCC--
Q 026993 90 RELIRQGECAVAVHVFSTIQREYQ-QQD----------LGLLTDLINTLAKNGLTGEVDRLIGELEEI----D--GGD-- 150 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~~~-~pd----------~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~----g--~pd-- 150 (229)
....+.|++++|++.|.+..+-.. .|+ ...|+.+=.+|.+.|++++|..-+++..+- + .++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 345678999999999998765411 132 367888999999999999999998876531 1 222
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026993 151 ---GRGLSRVVRAVVEAGSKESTVRIYGLMKR 179 (229)
Q Consensus 151 ---~~tyn~lI~~~~~~g~~~~A~~~f~~M~~ 179 (229)
...|+.+=.+|.+.|++++|++.|.+..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23577778899999999999999998653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.91 E-value=0.029 Score=45.24 Aligned_cols=110 Identities=9% Similarity=-0.077 Sum_probs=79.9
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHcCCHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGL--TGEVDRLIGELEEIDGGDGRGLSRVV-RAVVEAGSKEST 170 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~--~~~A~~lf~~M~~~g~pd~~tyn~lI-~~~~~~g~~~~A 170 (229)
..|++++|+..|+...+... -+...|..+-.++...++ .++|...+.+..+...++...|..++ ..+-..|..++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 34557788888888766433 356667777767777664 88999999998765444667776665 455567899999
Q ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 026993 171 VRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELA 209 (229)
Q Consensus 171 ~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A 209 (229)
+..+++..+... -|...|.-+-..+.+.|+.++|
T Consensus 164 l~~~~~~i~~~p-----~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 164 LAFTDSLITRNF-----SNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHHTTTTTTC-----CCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHcCC-----CCHHHHHHHHHHHHHhcCHHHH
Confidence 999998887764 3677788788888888876654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.89 E-value=0.049 Score=39.10 Aligned_cols=116 Identities=11% Similarity=-0.095 Sum_probs=78.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHH
Q 026993 92 LIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAK----------NGLTGEVDRLIGELEEIDGGDGRGLSRVVRAV 161 (229)
Q Consensus 92 l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k----------~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~ 161 (229)
+-|.+.+++|++.|+...+.-. .|...|+.+=.+|.+ .+.+++|...|++..+...-+..+|+.+=..|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 4455678999999988866432 344455555445543 35678999999988765433567888887777
Q ss_pred HHcCC-----------HHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 026993 162 VEAGS-----------KESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGEEELANEVEREFCWVP 220 (229)
Q Consensus 162 ~~~g~-----------~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~~~ 220 (229)
...|+ +++|.+.|++..+.. |+..+|.--+.-+ ..|.+++.|..+..
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~------P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ------PDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC------TTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccC------CCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 76553 588889898887643 8877776444433 46677777776653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.1 Score=40.50 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=90.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH---cC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-C---CCHHHHHHHHH
Q 026993 90 RELIRQGECAVAVHVFSTIQRE---YQ-QQ--DLGLLTDLINTLAKNGLTGEVDRLIGELEEID-G---GDGRGLSRVVR 159 (229)
Q Consensus 90 ~~l~~~g~~~~A~~vf~~m~~~---~~-~p--d~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~---pd~~tyn~lI~ 159 (229)
..+...+....+...+...... .. .+ ....+..+...+...|+.++|...+.+-.... . .....+..+-.
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 3345567777787777665443 11 01 13356667778889999999999998865443 2 12456777888
Q ss_pred HHHHcCCHHHHHHHHHHHHH----cCCCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 026993 160 AVVEAGSKESTVRIYGLMKR----SGVGCSWKVD-EYVGKVLSKGLRRFGEEELANEVEREFCW 218 (229)
Q Consensus 160 ~~~~~g~~~~A~~~f~~M~~----~g~~~~~~Pd-~~Ty~~Li~~~~~~g~~~~A~~v~~e~~~ 218 (229)
.|...|++++|.+.|++... .+.. |+ ..++..+-..+.+.|+.++|.+.+++.-+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLM----SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccC----hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998753 3543 54 35678888999999999999999986544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.3 Score=31.92 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=45.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHH---c-C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQRE---Y-Q-QQD-LGLLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSR 156 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~---~-~-~pd-~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~ 156 (229)
|...+=..+.+.|+++.|+..|++-.+. . . .++ ..+|+.|=.+|.+.|++++|...+++..+.. |+ ..+++.
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~N 85 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 3344445567888888888888776543 1 1 122 3467777778888888888888888766543 43 334444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.24 E-value=1.5 Score=34.49 Aligned_cols=122 Identities=3% Similarity=-0.147 Sum_probs=85.1
Q ss_pred hcCCHHHHHHHHHHHHHHcCCCCHHH-HHH---HHHH-------HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHH
Q 026993 94 RQGECAVAVHVFSTIQREYQQQDLGL-LTD---LINT-------LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVV 162 (229)
Q Consensus 94 ~~g~~~~A~~vf~~m~~~~~~pd~~t-y~~---LI~~-------~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~ 162 (229)
+.+..++|+++++...+ .. ||..+ |+. ++.. +...|++++|..+|+...+...-+...|..+-.++.
T Consensus 41 ~~~~~~~al~~~~~~l~-~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 41 AGELDESVLELTSQILG-AN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp TTCCSHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH-HC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHH
Confidence 33445799999988764 34 66543 332 3333 334456889999999987654336778888888887
Q ss_pred HcCC--HHHHHHHHHHHHHcCCCCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 026993 163 EAGS--KESTVRIYGLMKRSGVGCSWKVDEYVGKV-LSKGLRRFGEEELANEVEREFCWVPGG 222 (229)
Q Consensus 163 ~~g~--~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~-Li~~~~~~g~~~~A~~v~~e~~~~~~~ 222 (229)
..++ .++|+..+.+..+..- ++...+.. +-..+...|..++|.+.++..-+..+.
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~ 176 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADE-----RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 176 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCT-----TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC
T ss_pred HhccccHHHHHHHHHHHHhhCc-----hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC
Confidence 7765 7899999999987643 45555543 446777789999999999877666554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=93.23 E-value=0.18 Score=40.05 Aligned_cols=54 Identities=13% Similarity=-0.042 Sum_probs=47.2
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 128 AKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 128 ~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.+.|++++|...+.+-.+...-|...+..+...||..|++++|.+.|+...+..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 467999999999999877653367899999999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.96 E-value=0.37 Score=31.46 Aligned_cols=60 Identities=10% Similarity=-0.028 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC---C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 026993 122 DLINTLAKNGLTGEVDRLIGELEEI---D---GGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSG 181 (229)
Q Consensus 122 ~LI~~~~k~g~~~~A~~lf~~M~~~---g---~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g 181 (229)
.|=..+.+.|++++|...|++-.+. . .++ ..+|+.|=.+|.+.|++++|++.|++..+..
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445678899999999999864432 1 233 4688999999999999999999999988753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.10 E-value=1 Score=36.75 Aligned_cols=106 Identities=9% Similarity=-0.004 Sum_probs=73.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCHHHHHHHHHHHH
Q 026993 84 DLLAALRELIRQGECAVAVHVFSTIQREYQQQDLGLLTDLINTLAKNGLTGEVDRLIGELEEID-GGDGRGLSRVVRAVV 162 (229)
Q Consensus 84 d~~~vl~~l~~~g~~~~A~~vf~~m~~~~~~pd~~ty~~LI~~~~k~g~~~~A~~lf~~M~~~g-~pd~~tyn~lI~~~~ 162 (229)
|.-.++..+.+.+++..|.++.... -+..+|..+...+.+.....-| .+...+ ..+...-..+|..|-
T Consensus 42 d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye 110 (336)
T d1b89a_ 42 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQ 110 (336)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHH
Confidence 4445666777777777776655433 3556788888888887776554 222222 335555578999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCC
Q 026993 163 EAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLSKGLRRFGE 205 (229)
Q Consensus 163 ~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li~~~~~~g~ 205 (229)
..|..++.+.+++....... ++...++-|+..+++.+.
T Consensus 111 ~~~~~e~Li~~Le~~~~~~~-----~~~~~~~~L~~lyak~~~ 148 (336)
T d1b89a_ 111 DRGYFEELITMLEAALGLER-----AHMGMFTELAILYSKFKP 148 (336)
T ss_dssp HTTCHHHHHHHHHHHTTSTT-----CCHHHHHHHHHHHHTTCH
T ss_pred HcCChHHHHHHHHHHHcCCc-----cchHHHHHHHHHHHHhCh
Confidence 99999999999987653322 677788889999998764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=90.23 E-value=0.53 Score=33.25 Aligned_cols=89 Identities=9% Similarity=-0.015 Sum_probs=60.4
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHH
Q 026993 127 LAKNGLTGEVDRLIGELEEIDGGDGRGLSRVVRAVVE----------AGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVL 196 (229)
Q Consensus 127 ~~k~g~~~~A~~lf~~M~~~g~pd~~tyn~lI~~~~~----------~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~L 196 (229)
|-|.+++++|...|+.-.+...-|..+|+.+=..|.. .+.+++|++.|++..+..- -+..+|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-----~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-----KKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-----TCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-----hhhHHHhhH
Confidence 4456779999999999876542244555555555553 3556899999999987652 366788778
Q ss_pred HHHHHhcCC-----------HHHHHHHHHHhhhcC
Q 026993 197 SKGLRRFGE-----------EELANEVEREFCWVP 220 (229)
Q Consensus 197 i~~~~~~g~-----------~~~A~~v~~e~~~~~ 220 (229)
-..|...|+ +++|.+.|+..-+..
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 777766553 466777776555543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.31 E-value=4.3 Score=34.10 Aligned_cols=79 Identities=13% Similarity=0.075 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHH
Q 026993 119 LLTDLINTLAKNGLTGEVDRLIGELEEIDGGD-GRGLSRVVRAVVEAGSKESTVRIYGLMKRSGVGCSWKVDEYVGKVLS 197 (229)
Q Consensus 119 ty~~LI~~~~k~g~~~~A~~lf~~M~~~g~pd-~~tyn~lI~~~~~~g~~~~A~~~f~~M~~~g~~~~~~Pd~~Ty~~Li 197 (229)
.+..|=+.+...|++++|...|.+-.+. .|+ ..+||.|=..|...|+..+|+..|.+-..... |-..++..|.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l-~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-----~~~~a~~nL~ 227 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-----PFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-----CCHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCHHHHHHHH
Confidence 3444556677778888888888776543 344 46788888888888888888888877765443 6666677776
Q ss_pred HHHHhc
Q 026993 198 KGLRRF 203 (229)
Q Consensus 198 ~~~~~~ 203 (229)
..|.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|