Citrus Sinensis ID: 027005

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccEEEcccccccccccccEEccccccccccEEEEEEccEEEEEEccccccccccccccc
ccccccccccccHHHccccccccccccEEEccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHEEccccccccccccEcEcccccEcEHHHHHHHcccccEEEEEcHHHcEEEEEEcccccEccEEEEcEccccccEccEEccccEEEccccccEEEccccEEEccccccccEEEEEEEccEEEEEEccccccccccccccc
masssslssatpsqlcsskggmfcpsraflvkpartqmvtknpmgmkikcqatsipadrvpdmgKRQLMNLLLLGavslptgfmlvpyatffappglgsagggttakdaigndiiaadwlnthgpgdrtlteglkgdptylvvekdktlasygINAVCTHLgcvvpwnsaenkficpchgsqynnqgrvvrgpaPLSLALAHAnvengkvvfvpwtetdfrtgeapwwa
masssslssatpsqlcsskggmfCPSRAFLVKPARTQmvtknpmgmkikcQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDrtlteglkgdptYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTEtdfrtgeapwwa
MAsssslssatpsqlcssKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA
*********************MFCPSRAFLVKPARTQMV*****GMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPW**
********************************************************************MNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG*APWWA
*****************SKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA
*********************MFCPSRAFLVK*AR********MGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query229 2.2.26 [Sep-21-2011]
P26291230 Cytochrome b6-f complex i N/A no 0.991 0.986 0.755 4e-95
P08980230 Cytochrome b6-f complex i N/A no 0.986 0.982 0.768 2e-91
Q69S39225 Cytochrome b6-f complex i yes no 0.978 0.995 0.691 2e-90
O49078230 Cytochrome b6-f complex i N/A no 1.0 0.995 0.713 8e-88
Q7X9A6222 Cytochrome b6-f complex i N/A no 0.965 0.995 0.662 2e-87
Q9ZR03229 Cytochrome b6-f complex i yes no 0.982 0.982 0.743 4e-86
Q69GY7230 Cytochrome b6-f complex i N/A no 0.978 0.973 0.732 2e-82
Q02585228 Cytochrome b6-f complex i N/A no 0.969 0.973 0.737 2e-80
P30361228 Cytochrome b6-f complex i N/A no 0.969 0.973 0.728 5e-79
B0JXB7179 Cytochrome b6-f complex i yes no 0.772 0.988 0.657 2e-65
>sp|P26291|UCRIA_PEA Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Pisum sativum GN=petC PE=2 SV=1 Back     alignment and function desciption
 Score =  347 bits (890), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 196/229 (85%), Gaps = 2/229 (0%)

Query: 3   SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPD 62
           SS++LS  TPSQLCS K G+ CPS A LVKP RTQM  +   GMKI CQATSIPADRVPD
Sbjct: 2   SSTTLSPTTPSQLCSGKSGISCPSIALLVKPTRTQMTGRGNKGMKITCQATSIPADRVPD 61

Query: 63  MGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNT 122
           M KR+ +NLLLLGA+SLPT  MLVPY +F  PPG GS+ GGT AKDA+GND++A +WL T
Sbjct: 62  MSKRKTLNLLLLGALSLPTAGMLVPYGSFLVPPGSGSSTGGTVAKDAVGNDVVATEWLKT 121

Query: 123 HGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQ 182
           H PGDRTLT+GLKGDPTYLVVEKD+TLA++ INAVCTHLGCVVP+N AENKFICPCHGSQ
Sbjct: 122 HAPGDRTLTQGLKGDPTYLVVEKDRTLATFAINAVCTHLGCVVPFNQAENKFICPCHGSQ 181

Query: 183 YNNQGRVVRGPAPLSLALAHAN--VENGKVVFVPWTETDFRTGEAPWWA 229
           YN+QGRVVRGPAPLSLALAH +  VE+GKVVFVPW ETDFRTG+APWW+
Sbjct: 182 YNDQGRVVRGPAPLSLALAHCDVGVEDGKVVFVPWVETDFRTGDAPWWS 230
Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions.
Pisum sativum (taxid: 3888)
EC: 1EC: .EC: 1EC: 0EC: .EC: 9EC: .EC: 1
>sp|P08980|UCRIA_SPIOL Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Spinacia oleracea GN=petC PE=1 SV=2 Back     alignment and function description
>sp|Q69S39|UCRIA_ORYSJ Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Oryza sativa subsp. japonica GN=petC PE=1 SV=1 Back     alignment and function description
>sp|O49078|UCRIA_FRIAG Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Fritillaria agrestis GN=petC PE=2 SV=1 Back     alignment and function description
>sp|Q7X9A6|UCRIA_WHEAT Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Triticum aestivum GN=petC PE=2 SV=1 Back     alignment and function description
>sp|Q9ZR03|UCRIA_ARATH Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Arabidopsis thaliana GN=petC PE=1 SV=1 Back     alignment and function description
>sp|Q69GY7|UCRIA_SOLTU Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Solanum tuberosum GN=petC PE=2 SV=1 Back     alignment and function description
>sp|Q02585|UCRIB_TOBAC Cytochrome b6-f complex iron-sulfur subunit 2, chloroplastic OS=Nicotiana tabacum GN=petC2 PE=2 SV=1 Back     alignment and function description
>sp|P30361|UCRIA_TOBAC Cytochrome b6-f complex iron-sulfur subunit 1, chloroplastic OS=Nicotiana tabacum GN=petC1 PE=2 SV=2 Back     alignment and function description
>sp|B0JXB7|UCRI_MICAN Cytochrome b6-f complex iron-sulfur subunit OS=Microcystis aeruginosa (strain NIES-843) GN=petC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
225461287228 PREDICTED: cytochrome b6-f complex iron- 0.991 0.995 0.779 1e-102
255627487227 unknown [Glycine max] 0.986 0.995 0.762 1e-102
356549980227 PREDICTED: cytochrome b6-f complex iron- 0.986 0.995 0.757 1e-101
351726724227 Rieske iron-sulphur protein precursor [G 0.986 0.995 0.744 5e-99
388490498227 unknown [Lotus japonicus] 0.986 0.995 0.792 5e-99
315364830227 chloroplast Rieske-type ion-sulfur prote 0.986 0.995 0.770 1e-97
449438050227 PREDICTED: cytochrome b6-f complex iron- 0.986 0.995 0.766 2e-96
225447691226 PREDICTED: cytochrome b6-f complex iron- 0.982 0.995 0.747 3e-96
255640787262 unknown [Glycine max] 0.956 0.835 0.75 3e-96
255544369220 Cytochrome b6-f complex iron-sulfur subu 0.956 0.995 0.792 5e-96
>gi|225461287|ref|XP_002284361.1| PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic isoform 1 [Vitis vinifera] gi|147826727|emb|CAN66108.1| hypothetical protein VITISV_020089 [Vitis vinifera] gi|302143099|emb|CBI20394.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/227 (77%), Positives = 198/227 (87%)

Query: 3   SSSSLSSATPSQLCSSKGGMFCPSRAFLVKPARTQMVTKNPMGMKIKCQATSIPADRVPD 62
           ++S+LS AT SQLCS + G+  PS A L K  RT        G+KIKCQATSIPADRVPD
Sbjct: 2   AASTLSPATSSQLCSIRNGVLSPSHALLPKLTRTSPFVGKGKGLKIKCQATSIPADRVPD 61

Query: 63  MGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNT 122
           MGKR+LMNLLLLGA+SLP+  ML+PYATFFAPPG GSAGGG  AKDA+GND+IA +WL T
Sbjct: 62  MGKRKLMNLLLLGAISLPSAGMLIPYATFFAPPGTGSAGGGIVAKDALGNDVIADEWLKT 121

Query: 123 HGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQ 182
           HGPGDRTLT+GLKGDPTYLVVE DKTLA+YGINAVCTHLGCVVPWN+AENKFICPCHGSQ
Sbjct: 122 HGPGDRTLTQGLKGDPTYLVVENDKTLATYGINAVCTHLGCVVPWNAAENKFICPCHGSQ 181

Query: 183 YNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229
           YNNQGRVVRGPAPLSLALAHA++++GKV+FVPW ETDFRTGE PWWA
Sbjct: 182 YNNQGRVVRGPAPLSLALAHADIDDGKVLFVPWVETDFRTGEDPWWA 228

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255627487|gb|ACU14088.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356549980|ref|XP_003543368.1| PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|351726724|ref|NP_001237648.1| Rieske iron-sulphur protein precursor [Glycine max] gi|158935079|emb|CAM57107.1| Rieske iron-sulphur protein precursor [Glycine max] Back     alignment and taxonomy information
>gi|388490498|gb|AFK33315.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|315364830|gb|ADU05416.1| chloroplast Rieske-type ion-sulfur protein [Citrullus lanatus] Back     alignment and taxonomy information
>gi|449438050|ref|XP_004136803.1| PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Cucumis sativus] gi|449530696|ref|XP_004172329.1| PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like [Cucumis sativus] gi|395455815|emb|CCJ09121.1| Rieske type ion sulfur subunit (chloroplast) [Cucumis sativus] Back     alignment and taxonomy information
>gi|225447691|ref|XP_002276770.1| PREDICTED: cytochrome b6-f complex iron-sulfur subunit, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255640787|gb|ACU20677.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255544369|ref|XP_002513246.1| Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative [Ricinus communis] gi|223547620|gb|EEF49114.1| Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query229
TAIR|locus:2005534229 PETC "photosynthetic electron 0.921 0.921 0.747 1.4e-89
TIGR_CMR|GSU_1650139 GSU_1650 "cytochrome b/b6 comp 0.528 0.870 0.352 3.8e-14
TIGR_CMR|BA_1544170 BA_1544 "menaquinol-cytochrome 0.628 0.847 0.291 2.2e-11
TIGR_CMR|NSE_0624173 NSE_0624 "ubiquinol-cytochrome 0.362 0.479 0.402 3.5e-11
POMBASE|SPBC16H5.06228 rip1 "ubiquinol-cytochrome-c r 0.288 0.289 0.442 2.2e-10
TIGR_CMR|APH_0401189 APH_0401 "ubiquinol-cytochrome 0.240 0.291 0.474 5.2e-10
TIGR_CMR|ECH_0520187 ECH_0520 "ubiquinol-cytochrome 0.275 0.336 0.406 6.6e-10
TIGR_CMR|GSU_2933131 GSU_2933 "cytochrome b/b6 comp 0.292 0.511 0.410 7.7e-09
RGD|628838274 Uqcrfs1 "ubiquinol-cytochrome 0.248 0.208 0.482 8.5e-09
TIGR_CMR|BA_0365508 BA_0365 "Rieske 2Fe-2S iron-su 0.218 0.098 0.46 1.3e-08
TAIR|locus:2005534 PETC "photosynthetic electron transfer C" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.4e-89, P = 1.4e-89
 Identities = 160/214 (74%), Positives = 183/214 (85%)

Query:    19 KGGMFCPSRAFLVKPART--QMVTKNPMGMKIKCQATSIPADRVPDMGKRQLMNLLLLGA 76
             +  +   S    VKP +   QMV K  +G++I CQA+SIPADRVPDM KR+ +NLLLLGA
Sbjct:    16 RSALMAMSSGLFVKPTKMNHQMVRKEKIGLRISCQASSIPADRVPDMEKRKTLNLLLLGA 75

Query:    77 VSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKG 136
             +SLPTG+MLVPYATFF PPG G  GGGT AKDA+GND++AA+WL THGPGDRTLT+GLKG
Sbjct:    76 LSLPTGYMLVPYATFFVPPGTGGGGGGTPAKDALGNDVVAAEWLKTHGPGDRTLTQGLKG 135

Query:   137 DPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPL 196
             DPTYLVVE DKTLA+YGINAVCTHLGCVVPWN AENKF+CPCHGSQYN QGRVVRGPAPL
Sbjct:   136 DPTYLVVENDKTLATYGINAVCTHLGCVVPWNKAENKFLCPCHGSQYNAQGRVVRGPAPL 195

Query:   197 SLALAHANV-ENGKVVFVPWTETDFRTGEAPWWA 229
             SLALAHA++ E GKV+FVPW ETDFRTG+APWW+
Sbjct:   196 SLALAHADIDEAGKVLFVPWVETDFRTGDAPWWS 229
GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=IEA
GO:0009496 "plastoquinol--plastocyanin reductase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016679 "oxidoreductase activity, acting on diphenols and related substances as donors" evidence=IEA
GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0010196 "nonphotochemical quenching" evidence=IMP
GO:0009512 "cytochrome b6f complex" evidence=TAS
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA;TAS
GO:0009767 "photosynthetic electron transport chain" evidence=TAS
GO:0046028 "electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0042742 "defense response to bacterium" evidence=IEP;RCA
GO:0016020 "membrane" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0080167 "response to karrikin" evidence=IEP
GO:0000165 "MAPK cascade" evidence=RCA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009657 "plastid organization" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
TIGR_CMR|GSU_1650 GSU_1650 "cytochrome b/b6 complex, iron-sulfur subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1544 BA_1544 "menaquinol-cytochrome c reductase, iron-sulfur subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0624 NSE_0624 "ubiquinol-cytochrome c reductase, iron-sulfur subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
POMBASE|SPBC16H5.06 rip1 "ubiquinol-cytochrome-c reductase complex subunit 5" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0401 APH_0401 "ubiquinol-cytochrome c reductase, iron-sulfur subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0520 ECH_0520 "ubiquinol-cytochrome c reductase, iron-sulfur subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2933 GSU_2933 "cytochrome b/b6 complex, iron-sulfur subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
RGD|628838 Uqcrfs1 "ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TIGR_CMR|BA_0365 BA_0365 "Rieske 2Fe-2S iron-sulfur protein, putative" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A9BE84UCRI_PROM41, ., 1, 0, ., 9, ., 10.61270.75100.9662yesno
Q9ZR03UCRIA_ARATH1, ., 1, 0, ., 9, ., 10.74340.98250.9825yesno
P30361UCRIA_TOBAC1, ., 1, 0, ., 9, ., 10.72840.96940.9736N/Ano
Q7XYM4UCRIA_BIGNA1, ., 1, 0, ., 9, ., 10.50690.94320.8571N/Ano
Q9SBN3UCRIA_VOLCA1, ., 1, 0, ., 9, ., 10.59590.84710.9417N/Ano
Q93SX0UCRIA_NOSS11, ., 1, 0, ., 9, ., 10.64700.74230.9497yesno
Q7V2L4UCRI_PROMP1, ., 1, 0, ., 9, ., 10.55930.77290.9943yesno
A3PBI5UCRI_PROM01, ., 1, 0, ., 9, ., 10.57060.77290.9943yesno
Q69S39UCRIA_ORYSJ1, ., 1, 0, ., 9, ., 10.69130.97810.9955yesno
Q3AWL7UCRI_SYNS91, ., 1, 0, ., 9, ., 10.61580.77290.9943yesno
Q7V654UCRI_PROMM1, ., 1, 0, ., 9, ., 10.61360.76850.9887yesno
P26292UCRI_SYNP21, ., 1, 0, ., 9, ., 10.66080.74230.9444yesno
P26291UCRIA_PEA1, ., 1, 0, ., 9, ., 10.75540.99120.9869N/Ano
Q02585UCRIB_TOBAC1, ., 1, 0, ., 9, ., 10.73700.96940.9736N/Ano
O49078UCRIA_FRIAG1, ., 1, 0, ., 9, ., 10.71301.00.9956N/Ano
Q31NV7UCRI_SYNE71, ., 1, 0, ., 9, ., 10.63000.75540.9664yesno
A2C0R9UCRI_PROM11, ., 1, 0, ., 9, ., 10.59090.76850.9887yesno
B8HNR1UCRI_CYAP41, ., 1, 0, ., 9, ., 10.65080.73790.9441yesno
B2J3K2UCRI_NOSP71, ., 1, 0, ., 9, ., 10.63520.74230.9497yesno
A8G3H7UCRI_PROM21, ., 1, 0, ., 9, ., 10.57060.77290.9943yesno
Q46GW1UCRI_PROMT1, ., 1, 0, ., 9, ., 10.59090.76850.9887yesno
A2BPU5UCRI_PROMS1, ., 1, 0, ., 9, ., 10.57060.77290.9943yesno
Q2JL39UCRI_SYNJB1, ., 1, 0, ., 9, ., 10.51530.70740.9418yesno
A2C7F6UCRI_PROM31, ., 1, 0, ., 9, ., 10.61360.76850.9887yesno
Q5CC93UCRIA_CYAPA1, ., 1, 0, ., 9, ., 10.58870.87770.8410N/Ano
Q114L6UCRI_TRIEI1, ., 1, 0, ., 9, ., 10.64240.77290.9888yesno
Q69GY7UCRIA_SOLTU1, ., 1, 0, ., 9, ., 10.73270.97810.9739N/Ano
Q7U566UCRI_SYNPX1, ., 1, 0, ., 9, ., 10.61580.77290.9943yesno
Q5N5B0UCRI_SYNP61, ., 1, 0, ., 9, ., 10.63000.75540.9664yesno
P08980UCRIA_SPIOL1, ., 1, 0, ., 9, ., 10.76850.98680.9826N/Ano
A5GRU8UCRI_SYNR31, ., 1, 0, ., 9, ., 10.61580.77290.9943yesno
Q2JUP1UCRI_SYNJA1, ., 1, 0, ., 9, ., 10.50920.70740.9418yesno
Q7X9A6UCRIA_WHEAT1, ., 1, 0, ., 9, ., 10.66220.96500.9954N/Ano
Q5CC92UCRIB_CYAPA1, ., 1, 0, ., 9, ., 10.61300.84710.8049N/Ano
P49728UCRIA_CHLRE1, ., 1, 0, ., 9, ., 10.59090.84710.9417N/Ano
Q31C72UCRI_PROM91, ., 1, 0, ., 9, ., 10.56490.77290.9943yesno
Q9L3P9UCRIA_ANAVT1, ., 1, 0, ., 9, ., 10.65290.74230.9497yesno
A5GMW1UCRI_SYNPW1, ., 1, 0, ., 9, ., 10.62140.77290.9943yesno
P0C8N7UCRI_SYNEL1, ., 1, 0, ., 9, ., 10.62350.73790.9388yesno
Q7VDC0UCRI_PROMA1, ., 1, 0, ., 9, ., 10.59190.75540.9719yesno
P0C8N8UCRI_THEEB1, ., 1, 0, ., 9, ., 10.62350.73790.9388yesno
Q3ALY0UCRI_SYNSC1, ., 1, 0, ., 9, ., 10.61010.77290.9943yesno
A2BVC4UCRI_PROM51, ., 1, 0, ., 9, ., 10.55930.77290.9943yesno
Q0I872UCRI_SYNS31, ., 1, 0, ., 9, ., 10.61010.77290.9943yesno
B0JXB7UCRI_MICAN1, ., 1, 0, ., 9, ., 10.65730.77290.9888yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.10.99.10.979
3rd Layer1.10.990.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027575001
SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotgun sequence); (228 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00035655001
SubName- Full=Chromosome undetermined scaffold_79, whole genome shotgun sequence; (188 aa)
• •   • 0.496
GSVIVG00029966001
SubName- Full=Chromosome undetermined scaffold_51, whole genome shotgun sequence; (129 aa)
• •   • 0.471
GSVIVG00018133001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (106 aa)
  •     0.452
GSVIVG00035255001
SubName- Full=Chromosome chr10 scaffold_76, whole genome shotgun sequence; (192 aa)
• •   • 0.433
GSVIVG00012660001
SubName- Full=Chromosome undetermined scaffold_3171, whole genome shotgun sequence; (161 aa)
    • • 0.429

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
PRK13474178 PRK13474, PRK13474, cytochrome b6-f complex iron-s 1e-105
cd03471126 cd03471, Rieske_cytochrome_b6f, Iron-sulfur protei 8e-92
COG0723177 COG0723, QcrA, Rieske Fe-S protein [Energy product 4e-34
pfam0035599 pfam00355, Rieske, Rieske [2Fe-2S] domain 7e-16
cd0347791 cd03477, Rieske_YhfW_C, YhfW family, C-terminal Ri 1e-15
cd03470126 cd03470, Rieske_cytochrome_bc1, Iron-sulfur protei 3e-15
cd0346798 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster 8e-15
pfam0880236 pfam08802, CytB6-F_Fe-S, Cytochrome B6-F complex F 2e-13
TIGR01416174 TIGR01416, Rieske_proteo, ubiquinol-cytochrome c r 2e-12
cd03476126 cd03476, Rieske_ArOX_small, Small subunit of Arsen 3e-06
TIGR02694129 TIGR02694, arsenite_ox_S, arsenite oxidase, small 1e-04
COG2146106 COG2146, {NirD}, Ferredoxin subunits of nitrite re 1e-04
cd03475171 cd03475, Rieske_SoxF_SoxL, SoxF and SoxL family, R 7e-04
cd0347895 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing f 0.002
>gnl|CDD|237392 PRK13474, PRK13474, cytochrome b6-f complex iron-sulfur subunit; Provisional Back     alignment and domain information 
 Score =  299 bits (768), Expect = e-105
 Identities = 120/176 (68%), Positives = 135/176 (76%), Gaps = 1/176 (0%)

Query: 54  SIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGND 113
           S  +D VP MG+RQ MNLL  G V+      L P   +F PP  G AGGGTTAKD +GND
Sbjct: 4   SGSSD-VPSMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPSAGGAGGGTTAKDELGND 62

Query: 114 IIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENK 173
           I A+ +L TH  GDR+L +GLKGDPTYLVVE+D T+ASYGINAVCTHLGCVVPWNS ENK
Sbjct: 63  IPASQFLATHPAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGENK 122

Query: 174 FICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA 229
           F CPCHGSQY+  G+VVRGPAPLSLAL H  VE+ KV+F PWTETDFRTGE PWW 
Sbjct: 123 FQCPCHGSQYDATGKVVRGPAPLSLALVHVTVEDDKVLFSPWTETDFRTGEKPWWV 178

Length = 178
>gnl|CDD|239553 cd03471, Rieske_cytochrome_b6f, Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>gnl|CDD|223795 COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215875 pfam00355, Rieske, Rieske [2Fe-2S] domain Back     alignment and domain information
>gnl|CDD|239559 cd03477, Rieske_YhfW_C, YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain Back     alignment and domain information
>gnl|CDD|239552 cd03470, Rieske_cytochrome_bc1, Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>gnl|CDD|239550 cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>gnl|CDD|220024 pfam08802, CytB6-F_Fe-S, Cytochrome B6-F complex Fe-S subunit Back     alignment and domain information
>gnl|CDD|233404 TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit Back     alignment and domain information
>gnl|CDD|239558 cd03476, Rieske_ArOX_small, Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate Back     alignment and domain information
>gnl|CDD|131741 TIGR02694, arsenite_ox_S, arsenite oxidase, small subunit Back     alignment and domain information
>gnl|CDD|225057 COG2146, {NirD}, Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|239557 cd03475, Rieske_SoxF_SoxL, SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>gnl|CDD|239560 cd03478, Rieske_AIFL_N, AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 229
PRK13474178 cytochrome b6-f complex iron-sulfur subunit; Provi 100.0
cd03471126 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) co 99.97
TIGR01416174 Rieske_proteo ubiquinol-cytochrome c reductase, ir 99.95
KOG1671210 consensus Ubiquinol cytochrome c reductase, subuni 99.95
COG0723177 QcrA Rieske Fe-S protein [Energy production and co 99.94
TIGR03171321 soxL2 Rieske iron-sulfur protein SoxL2. This iron- 99.94
cd03470126 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) co 99.86
cd03476126 Rieske_ArOX_small Small subunit of Arsenite oxidas 99.82
cd0352898 Rieske_RO_ferredoxin Rieske non-heme iron oxygenas 99.81
cd0347895 Rieske_AIFL_N AIFL (apoptosis-inducing factor like 99.81
TIGR02377101 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE 99.81
cd0353098 Rieske_NirD_small_Bacillus Small subunit of nitrit 99.8
PF0035597 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR01794 99.79
cd03469118 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase ( 99.79
PRK09965106 3-phenylpropionate dioxygenase ferredoxin subunit; 99.77
cd03474108 Rieske_T4moC Toluene-4-monooxygenase effector prot 99.77
cd0347791 Rieske_YhfW_C YhfW family, C-terminal Rieske domai 99.76
cd04337129 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) 99.75
TIGR02694129 arsenite_ox_S arsenite oxidase, small subunit. Thi 99.75
cd03532116 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxy 99.75
cd03531115 Rieske_RO_Alpha_KSH The alignment model represents 99.74
cd03479144 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxy 99.73
cd04338134 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-relate 99.73
cd0346798 Rieske Rieske domain; a [2Fe-2S] cluster binding d 99.72
cd03529103 Rieske_NirD Assimilatory nitrite reductase (NirD) 99.71
COG2146106 {NirD} Ferredoxin subunits of nitrite reductase an 99.7
TIGR02378105 nirD_assim_sml nitrite reductase [NAD(P)H], small 99.7
cd03475171 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske doma 99.69
cd03480138 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase 99.69
cd03536123 Rieske_RO_Alpha_DTDO This alignment model represen 99.68
cd03472128 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxy 99.67
PRK09511108 nirD nitrite reductase small subunit; Provisional 99.67
cd03548136 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxy 99.66
cd03537123 Rieske_RO_Alpha_PrnD This alignment model represen 99.65
cd03541118 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase 99.65
cd03545150 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron ox 99.61
cd03535123 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase 99.6
cd03539129 Rieske_RO_Alpha_S5H This alignment model represent 99.58
PLN02281 536 chlorophyllide a oxygenase 99.58
PF13806104 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 99.56
PLN00095 394 chlorophyllide a oxygenase; Provisional 99.56
cd03538146 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygena 99.56
cd03542123 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenas 99.54
cd03473107 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophospha 99.48
PLN02518 539 pheophorbide a oxygenase 99.41
COG4638 367 HcaE Phenylpropionate dioxygenase and related ring 99.34
TIGR03228 438 anthran_1_2_A anthranilate 1,2-dioxygenase, large 99.28
TIGR03229 433 benzo_1_2_benA benzoate 1,2-dioxygenase, large sub 99.27
PF0880239 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit 99.12
PF1039941 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe- 98.41
TIGR0281166 formate_TAT formate dehydrogenase region TAT targe 95.64
KOG1336 478 consensus Monodehydroascorbate/ferredoxin reductas 95.4
PF1051826 TAT_signal: TAT (twin-arginine translocation) path 95.29
TIGR0140929 TAT_signal_seq Tat (twin-arginine translocation) p 93.02
PRK09898208 hypothetical protein; Provisional 85.51
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-45  Score=312.34  Aligned_cols=174  Identities=68%  Similarity=1.198  Sum_probs=157.5

Q ss_pred             CCCCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCccccccCC
Q 027005           56 PADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLK  135 (229)
Q Consensus        56 ~~~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~  135 (229)
                      ..+++||++||+||+.+++++++++++++++|+++|+.||....+.++.+.+|.+|+++..++|..++.+++..+.+...
T Consensus         5 ~~~~~~d~~RR~FL~~~~~~~gg~~a~~~~~P~v~~~~Pp~~~~~~g~~~a~d~~G~~I~~s~~~~~~~~g~~~~v~~~~   84 (178)
T PRK13474          5 GSSDVPSMGRRQFMNLLTFGTVTGVALGALYPVVKYFIPPSAGGAGGGTTAKDELGNDIPASQFLATHPAGDRSLVQGLK   84 (178)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhheeCChhHccCCCcceeecccCCeeehhhccccCCCCCcEEEEEcC
Confidence            35789999999999999999999999999999999999998776666778889999999888887776676666666667


Q ss_pred             CCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCeEEEEeC
Q 027005          136 GDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPW  215 (229)
Q Consensus       136 g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~I~V~~~  215 (229)
                      +++.+++++.+|++.+||++++|||+||++.|+..++.|.||||||+||.+|+++.||++++|+.|+++++||.|+|.+|
T Consensus        85 g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~~~~~~CP~Hgs~Fd~tG~~~~gPa~~~L~~y~v~v~~g~v~v~~~  164 (178)
T PRK13474         85 GDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSGENKFQCPCHGSQYDATGKVVRGPAPLSLALVHVTVEDDKVLFSPW  164 (178)
T ss_pred             CCeEEEEEeCCCEEEEEEecCCCCCCCCccccccCCCEEEecCcCCEECCCCCCccCCCCCCCCeEeEEEECCEEEEEEe
Confidence            78888888889998778999999999999999877789999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCC
Q 027005          216 TETDFRTGEAPWWA  229 (229)
Q Consensus       216 ~~~~fr~~~~~~~~  229 (229)
                      .|+|||+|++|||+
T Consensus       165 ~e~~~~~~~~~~~~  178 (178)
T PRK13474        165 TETDFRTGEKPWWV  178 (178)
T ss_pred             eecCCcCCCCCCcC
Confidence            99999999999996

>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit Back     alignment and domain information
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion] Back     alignment and domain information
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion] Back     alignment and domain information
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2 Back     alignment and domain information
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate Back     alignment and domain information
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO) Back     alignment and domain information
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox) Back     alignment and domain information
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily Back     alignment and domain information
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain Back     alignment and domain information
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types Back     alignment and domain information
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms Back     alignment and domain information
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional Back     alignment and domain information
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain Back     alignment and domain information
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b Back     alignment and domain information
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit Back     alignment and domain information
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH) Back     alignment and domain information
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA) Back     alignment and domain information
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane Back     alignment and domain information
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes Back     alignment and domain information
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium Back     alignment and domain information
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit Back     alignment and domain information
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1) Back     alignment and domain information
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO) Back     alignment and domain information
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO) Back     alignment and domain information
>PRK09511 nirD nitrite reductase small subunit; Provisional Back     alignment and domain information
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD) Back     alignment and domain information
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins Back     alignment and domain information
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H) Back     alignment and domain information
>PLN02281 chlorophyllide a oxygenase Back     alignment and domain information
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A Back     alignment and domain information
>PLN00095 chlorophyllide a oxygenase; Provisional Back     alignment and domain information
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth Back     alignment and domain information
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer Back     alignment and domain information
>PLN02518 pheophorbide a oxygenase Back     alignment and domain information
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit Back     alignment and domain information
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit Back     alignment and domain information
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions Back     alignment and domain information
>PF10399 UCR_Fe-S_N: Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal; InterPro: IPR019470 This entry represents the TAT-signal region found in the iron-sulphur subunit of Ubiquinol-cytochrome C reductase (also known as the cytochrome bc1 complex) Back     alignment and domain information
>TIGR02811 formate_TAT formate dehydrogenase region TAT target Back     alignment and domain information
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] Back     alignment and domain information
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes [] Back     alignment and domain information
>TIGR01409 TAT_signal_seq Tat (twin-arginine translocation) pathway signal sequence Back     alignment and domain information
>PRK09898 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1rfs_A139 Rieske Soluble Fragment From Spinach Length = 139 2e-64
2zt9_D179 Crystal Structure Of The Cytochrome B6f Complex Fro 1e-59
1vf5_D179 Crystal Structure Of Cytochrome B6f Complex From M. 4e-59
2e74_D179 Crystal Structure Of The Cytochrome B6f Complex Fro 1e-58
1q90_C127 Structure Of The Cytochrome B6f (Plastohydroquinone 3e-51
3azc_A133 Crystal Structure Of The Soluble Part Of Cytochrome 7e-50
1bcc_E196 Cytochrome Bc1 Complex From Chicken Length = 196 6e-09
1qcr_E196 Crystal Structure Of Bovine Mitochondrial Cytochrom 8e-09
1rie_A129 Structure Of A Water Soluble Fragment Of The Rieske 1e-08
1ezv_E185 Structure Of The Yeast Cytochrome Bc1 Complex Co- C 2e-08
3cwb_E196 Chicken Cytochrome Bc1 Complex Inhibited By An Iodi 2e-08
2yiu_C190 X-Ray Structure Of The Dimeric Cytochrome Bc1 Compl 8e-08
1zrt_E191 Rhodobacter Capsulatus Cytochrome Bc1 Complex With 1e-07
2nuk_A141 Soluble Domain Of The Rieske Iron-Sulfur Protein Fr 3e-07
2qjp_C179 Crystal Structure Of Wild Type Rhodobacter Sphaeroi 4e-07
2nve_A141 Soluble Domain Of Rieske Iron Sulfur Protein Length 7e-07
2nvg_A141 Soluble Domain Of Rieske Iron Sulfur Protein Length 8e-07
2num_A141 Soluble Domain Of Rieske Iron-Sulfur Protein Length 8e-07
2nwf_A141 Soluble Domain Of Rieske Iron Sulfur Protein Length 1e-06
2nvf_A141 Soluble Domain Of Rieske Iron-Sulfur Protein Length 1e-06
2fyn_C187 Crystal Structure Analysis Of The Double Mutant Rho 2e-06
2qjk_C179 Crystal Structure Analysis Of Mutant Rhodobacter Sp 2e-06
1nyk_A165 Crystal Structure Of The Rieske Protein From Thermu 2e-05
3fou_A156 Low Ph Structure Of The Rieske Protein From Thermus 2e-05
1g8k_B133 Crystal Structure Analysis Of Arsenite Oxidase From 2e-04
1g8j_B133 Crystal Structure Analysis Of Arsenite Oxidase From 3e-04
1q90_R49 Structure Of The Cytochrome B6f (Plastohydroquinone 3e-04
>pdb|1RFS|A Chain A, Rieske Soluble Fragment From Spinach Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  242 bits (617), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 116/138 (84%), Positives = 129/138 (93%)
Query: 92  FAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLAS 151
           F PPG G+  GGT AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA+
Sbjct: 1   FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLAT 60
Query: 152 YGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV 211
           +GINAVCTHLGCVVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH +V++GKVV
Sbjct: 61  FGINAVCTHLGCVVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVV 120
Query: 212 FVPWTETDFRTGEAPWWA 229
           FVPWTETDFRTGEAPWW+
Sbjct: 121 FVPWTETDFRTGEAPWWS 138
>pdb|2ZT9|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From Nostoc Sp. Pcc 7120 Length = 179 Back     alignment and structure
>pdb|1VF5|D Chain D, Crystal Structure Of Cytochrome B6f Complex From M.Laminosus Length = 179 Back     alignment and structure
>pdb|2E74|D Chain D, Crystal Structure Of The Cytochrome B6f Complex From M.Laminosus Length = 179 Back     alignment and structure
>pdb|1Q90|C Chain C, Structure Of The Cytochrome B6f (Plastohydroquinone : Plastocyanin Oxidoreductase) From Chlamydomonas Reinhardtii Length = 127 Back     alignment and structure
>pdb|3AZC|A Chain A, Crystal Structure Of The Soluble Part Of Cytochrome B6f Complex Iron- Sulfur Subunit From Thermosynechococcus Elongatus Bp-1 Length = 133 Back     alignment and structure
>pdb|1BCC|E Chain E, Cytochrome Bc1 Complex From Chicken Length = 196 Back     alignment and structure
>pdb|1QCR|E Chain E, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 196 Back     alignment and structure
>pdb|1RIE|A Chain A, Structure Of A Water Soluble Fragment Of The Rieske Iron- Sulfur Protein Of The Bovine Heart Mitochondrial Cytochrome Bc1-complex Length = 129 Back     alignment and structure
>pdb|1EZV|E Chain E, Structure Of The Yeast Cytochrome Bc1 Complex Co- Crystallized With An Antibody Fv-Fragment Length = 185 Back     alignment and structure
>pdb|3CWB|E Chain E, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 196 Back     alignment and structure
>pdb|2YIU|C Chain C, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From The Soil Bacterium Paracoccus Denitrificans At 2.7 Angstrom Resolution Length = 190 Back     alignment and structure
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With Stigmatellin Bound Length = 191 Back     alignment and structure
>pdb|2NUK|A Chain A, Soluble Domain Of The Rieske Iron-Sulfur Protein From Rhodobacter Sphaeroides Length = 141 Back     alignment and structure
>pdb|2QJP|C Chain C, Crystal Structure Of Wild Type Rhodobacter Sphaeroides With Stigmatellin And Antimycin Inhibited Length = 179 Back     alignment and structure
>pdb|2NVE|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein Length = 141 Back     alignment and structure
>pdb|2NVG|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein Length = 141 Back     alignment and structure
>pdb|2NUM|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein Length = 141 Back     alignment and structure
>pdb|2NWF|A Chain A, Soluble Domain Of Rieske Iron Sulfur Protein Length = 141 Back     alignment and structure
>pdb|2NVF|A Chain A, Soluble Domain Of Rieske Iron-Sulfur Protein Length = 141 Back     alignment and structure
>pdb|2FYN|C Chain C, Crystal Structure Analysis Of The Double Mutant Rhodobacter Sphaeroides Bc1 Complex Length = 187 Back     alignment and structure
>pdb|2QJK|C Chain C, Crystal Structure Analysis Of Mutant Rhodobacter Sphaeroides Bc1 With Stigmatellin And Antimycin Length = 179 Back     alignment and structure
>pdb|1NYK|A Chain A, Crystal Structure Of The Rieske Protein From Thermus Thermophilus Length = 165 Back     alignment and structure
>pdb|3FOU|A Chain A, Low Ph Structure Of The Rieske Protein From Thermus Thermophilus At 2.1 A Length = 156 Back     alignment and structure
>pdb|1G8K|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From Alcaligenes Faecalis Length = 133 Back     alignment and structure
>pdb|1G8J|B Chain B, Crystal Structure Analysis Of Arsenite Oxidase From Alcaligenes Faecalis Length = 133 Back     alignment and structure
>pdb|1Q90|R Chain R, Structure Of The Cytochrome B6f (Plastohydroquinone : Plastocyanin Oxidoreductase) From Chlamydomonas Reinhardtii Length = 49 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query229
1vf5_D179 Rieske iron-sulfur protein; photosynthesis, membra 3e-76
1rfs_A139 Rieske protein; iron-sulfur protein, electron tran 2e-73
3azc_A133 Cytochrome B6-F complex iron-sulfur subunit; riesk 4e-61
1nyk_A165 Rieske iron-sulfur protein; beta barrel, iron sulf 3e-28
2nwf_A141 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 2e-24
1g8k_B133 Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, 6e-24
1jm1_A204 Rieske iron-sulfur protein SOXF; electron transpor 7e-21
2qjy_C187 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 3e-20
1pp9_E196 Ubiquinol-cytochrome C reductase iron-sulfur SUBU 2e-19
1q90_R49 Cytochrome B6-F complex iron-sulfur subunit; membr 1e-17
1rie_A129 Rieske iron-sulfur protein; oxidoreductase, cytoch 3e-16
3cx5_E185 Cytochrome B-C1 complex subunit rieske, mitochondr 2e-13
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 4e-04
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* Length = 179 Back     alignment and structure
 Score =  227 bits (579), Expect = 3e-76
 Identities = 108/177 (61%), Positives = 129/177 (72%)

Query: 52  ATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIG 111
           A    +  VPDMG+RQ MNLL  G V+      L P   +F PP  G+ GGGTTAKD +G
Sbjct: 2   AQFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLG 61

Query: 112 NDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAE 171
           N++  + +L +H  GDR L +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AE
Sbjct: 62  NNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAE 121

Query: 172 NKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWW 228
           NKF CPCHGSQY+  GRV+RGPAPLSLAL HA V++  +V  PWTETDFRTGE PWW
Sbjct: 122 NKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIVLTPWTETDFRTGEKPWW 178
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* Length = 139 Back     alignment and structure
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} Length = 133 Back     alignment and structure
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Length = 165 Back     alignment and structure
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A Length = 141 Back     alignment and structure
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* Length = 133 Back     alignment and structure
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 Length = 204 Back     alignment and structure
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* Length = 187 Back     alignment and structure
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... Length = 196 Back     alignment and structure
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1 Length = 49 Back     alignment and structure
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 Length = 129 Back     alignment and structure
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* Length = 185 Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Length = 121 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
1vf5_D179 Rieske iron-sulfur protein; photosynthesis, membra 100.0
2qjy_C187 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.96
1rfs_A139 Rieske protein; iron-sulfur protein, electron tran 99.96
3cx5_E185 Cytochrome B-C1 complex subunit rieske, mitochondr 99.96
1pp9_E196 Ubiquinol-cytochrome C reductase iron-sulfur SUBU 99.95
3azc_A133 Cytochrome B6-F complex iron-sulfur subunit; riesk 99.91
4aay_B175 AROB; oxidoreductase, rieske, iron sulfur, molybdo 99.9
1rie_A129 Rieske iron-sulfur protein; oxidoreductase, cytoch 99.85
2nwf_A141 Ubiquinol-cytochrome C reductase iron-sulfur SUBU; 99.85
3dqy_A106 Toluene 1,2-dioxygenase system ferredoxin subunit; 99.84
2qpz_A103 Naphthalene 1,2-dioxygenase system ferredoxin subu 99.84
2i7f_A108 Ferredoxin component of dioxygenase; rieske ferred 99.84
1g8k_B133 Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, 99.83
3gce_A121 Ferredoxin component of carbazole 1,9A- dioxygenas 99.83
1fqt_A112 Rieske-type ferredoxin of biphenyl dioxygenase; 2F 99.83
1vm9_A111 Toluene-4-monooxygenase system protein C; structur 99.82
2de6_D115 Ferredoxin component of carbazole; electron transf 99.81
2jo6_A113 Nitrite reductase [NAD(P)H] small subunit; all bet 99.77
3c0d_A119 Putative nitrite reductase NADPH (small subunit) o 99.76
1nyk_A165 Rieske iron-sulfur protein; beta barrel, iron sulf 99.75
4aiv_A119 Probable nitrite reductase [NAD(P)H] small subuni; 99.74
1jm1_A204 Rieske iron-sulfur protein SOXF; electron transpor 99.73
2jza_A130 Nitrite reductase [NAD(P)H] small subunit; ISP dom 99.73
3d89_A157 Rieske domain-containing protein; CAsp target, rie 99.67
3gke_A 349 DDMC; rieske cluster, non-heme mononuclear iron, o 99.61
2zyl_A 386 Possible oxidoreductase; KSHA, cholesterol, rieske 99.59
3gcf_A 394 Terminal oxygenase component of carbazole 1,9A- di 99.58
3gkq_A 389 Terminal oxygenase component of carbazole 1,9A- di 99.57
2de6_A 392 Terminal oxygenase component of carbazole; electro 99.55
3vca_A 412 Ring-hydroxylating dioxygenase; rieske-type, monon 99.54
2gbw_A 454 Biphenyl 2,3-dioxygenase alpha subunit; rieske oxy 99.53
3n0q_A 409 Putative aromatic-ring hydroxylating dioxygenase; 99.53
1z01_A 446 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.53
1uli_A 460 Biphenyl dioxygenase large subunit; alpha3 BETA3 h 99.51
2bmo_A 447 Oxygenase-alpha NBDO; nitrobenzene dioxygenase, ni 99.51
2b1x_A 470 Naphthalene dioxygenase large subunit; rieske non- 99.46
3gzx_A 457 Biphenyl dioxygenase subunit alpha; rieskie, non-h 99.4
1q90_R49 Cytochrome B6-F complex iron-sulfur subunit; membr 99.09
2pq4_B35 Periplasmic nitrate reductase precursor; NAPD/NAPA 93.27
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D* Back     alignment and structure
Probab=100.00  E-value=1.7e-45  Score=309.51  Aligned_cols=178  Identities=61%  Similarity=1.135  Sum_probs=147.4

Q ss_pred             cccCCCCCCCCcchHHHHHHHHHHHhHHHHHHhhhccccccCCCCCCCCCCCceeecCCCCceeeecccccCCCCCcccc
Q 027005           52 ATSIPADRVPDMGKRQLMNLLLLGAVSLPTGFMLVPYATFFAPPGLGSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLT  131 (229)
Q Consensus        52 ~~~~~~~~~pd~~RR~FL~~~~~Ga~al~~a~~~~P~~~~l~Pp~~~~~~~~~v~~d~~G~~v~~~~W~~~~~p~~~~~~  131 (229)
                      +.+.+.++.|+|+||+||+++++++++++++++++|+++++.|+......++.+.+|..|+++..++|+....+++....
T Consensus         2 ~~~~~~~~~~~~~RR~Fl~~~~~~~~~~~~~~~~~p~~~~~~p~~~~~~~~~~v~~d~~g~~i~~~~~~~~l~~g~~~~~   81 (179)
T 1vf5_D            2 AQFTESMDVPDMGRRQFMNLLAFGTVTGVALGALYPLVKYFIPPSGGAVGGGTTAKDKLGNNVKVSKFLESHNAGDRVLV   81 (179)
T ss_dssp             ----------CCCCCTTSCTTHHHHHHHHHHHHHHHHHHHHSCCCCSSCCCCCCCCBTTSSCCCHHHHHHCCCTTCCCEE
T ss_pred             CcccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhcccCCcEEEccCCCeEehhhcccccCCCceEEE
Confidence            34566678899999999999998999989999999999999999876665667888889988877777554445544444


Q ss_pred             ccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEcCCCceecCCCCCCCceEEEEEECCeEE
Q 027005          132 EGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVV  211 (229)
Q Consensus       132 ~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD~sG~vv~GPap~~L~~~~v~v~~g~I~  211 (229)
                      ....+++++++++.+|++.+||++++|||+||+|.++.+++.|.||||||+||.+|+++.||++++|++|++++++|.|+
T Consensus        82 ~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~~~L~~~~v~v~~g~v~  161 (179)
T 1vf5_D           82 QGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDETGRVIRGPAPLSLALCHATVQDDNIV  161 (179)
T ss_dssp             SCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCSSSSSEECTTTCCEECSSSCCCSSSCCSCCBCCCCCCSSSSCC
T ss_pred             eccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccCCCCEEECCCCCCEECCCCcEecCCCCCCCCeEEEEEECCEEE
Confidence            34567889998888888655899999999999999988788999999999999999999999999999999999999999


Q ss_pred             EEeCcCCCCCCCCCCCCC
Q 027005          212 FVPWTETDFRTGEAPWWA  229 (229)
Q Consensus       212 V~~~~~~~fr~~~~~~~~  229 (229)
                      |.+|.|+|||+|++|||+
T Consensus       162 v~~~~~~~~r~~~~~~~~  179 (179)
T 1vf5_D          162 LTPWTETDFRTGEKPWWV  179 (179)
T ss_dssp             CCCCCCCCTTTCSSCSCC
T ss_pred             EEeecCCCCcCCCCCCcC
Confidence            999999999999999996
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C* Back     alignment and structure
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C* Back     alignment and structure
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E* Back     alignment and structure
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ... Back     alignment and structure
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus} Back     alignment and structure
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species} Back     alignment and structure
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1 Back     alignment and structure
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A Back     alignment and structure
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B* Back     alignment and structure
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida} Back     alignment and structure
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae} Back     alignment and structure
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B* Back     alignment and structure
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans} Back     alignment and structure
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B* Back     alignment and structure
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A Back     alignment and structure
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* Back     alignment and structure
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3 Back     alignment and structure
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3 Back     alignment and structure
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A Back     alignment and structure
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1 Back     alignment and structure
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3 Back     alignment and structure
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus} Back     alignment and structure
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A* Back     alignment and structure
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans} Back     alignment and structure
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas} Back     alignment and structure
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A* Back     alignment and structure
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A Back     alignment and structure
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A Back     alignment and structure
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Back     alignment and structure
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A* Back     alignment and structure
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A Back     alignment and structure
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A* Back     alignment and structure
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A Back     alignment and structure
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A* Back     alignment and structure
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1 Back     alignment and structure
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 229
d1rfsa_127 b.33.1.1 (A:) ISP subunit from chloroplast cytochr 1e-54
d2e74d1134 b.33.1.1 (D:46-179) ISP subunit from the cytochrom 4e-52
d1riea_127 b.33.1.1 (A:) ISP subunit of the mitochondrial cyt 2e-17
d1q90r_39 f.23.12.1 (R:) ISP subunit from the cytochrome b6f 9e-17
d3cx5e1129 b.33.1.1 (E:87-215) ISP subunit of the mitochondri 5e-16
d1jm1a_202 b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon S 9e-12
d1g8kb_133 b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alc 2e-10
d1nyka_156 b.33.1.1 (A:) Soluble Rieske protein {Thermus ther 1e-08
d1vm9a_109 b.33.1.1 (A:) Toluene-4-monooxygenase system prote 6e-07
d2e74d234 f.23.12.1 (D:12-45) ISP subunit from the cytochrom 7e-05
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 127 Back     information, alignment and structure

class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score =  169 bits (429), Expect = 1e-54
 Identities = 109/126 (86%), Positives = 121/126 (96%)

Query: 104 TTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGC 163
           T AKDA+GND+IAA+WL TH PGDRTLT+GLKGDPTYLVVE DKTLA++GINAVCTHLGC
Sbjct: 1   TIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGC 60

Query: 164 VVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTG 223
           VVP+N+AENKFICPCHGSQYNNQGRVVRGPAPLSLALAH +V++GKVVFVPWTETDFRTG
Sbjct: 61  VVPFNAAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTG 120

Query: 224 EAPWWA 229
           EAPWW+
Sbjct: 121 EAPWWS 126
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Length = 134 Back     information, alignment and structure
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Length = 127 Back     information, alignment and structure
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]} Length = 39 Back     information, alignment and structure
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 129 Back     information, alignment and structure
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 202 Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Length = 133 Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Length = 156 Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Length = 109 Back     information, alignment and structure
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]} Length = 34 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query229
d1rfsa_127 ISP subunit from chloroplast cytochrome bf complex 100.0
d2e74d1134 ISP subunit from the cytochrome b6f complex, solub 99.97
d3cx5e1129 ISP subunit of the mitochondrial cytochrome bc1-co 99.9
d1riea_127 ISP subunit of the mitochondrial cytochrome bc1-co 99.89
d1g8kb_133 Arsenite oxidase Rieske subunit {Alcaligenes faeca 99.79
d1nyka_156 Soluble Rieske protein {Thermus thermophilus [TaxI 99.78
d1jm1a_202 Rieske protein II (SoxF) {Archaeon Sulfolobus acid 99.77
d1vm9a_109 Toluene-4-monooxygenase system protein C, TmoC {Ps 99.77
d1fqta_109 Rieske-type ferredoxin associated with biphenyl di 99.76
d3c0da1108 NADH-nitrite reductase small subunit NirD {Vibrio 99.76
d2jo6a1108 NADH-nitrite reductase small subunit NirD {Escheri 99.73
d2jzaa1122 NADH-nitrite reductase small subunit NirD {Erwinia 99.7
d2de6a1142 Terminal oxygenase component of carbazole CarAa {J 99.67
d1z01a1148 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygen 99.66
d1ulia1154 Biphenyl dioxygenase large subunit BphA1, N-termin 99.54
d2b1xa1162 Naphthalene 1,2-dioxygenase alpha subunit, N-domai 99.52
d2bmoa1150 Nitrobenzene dioxygenase alpha subunit, NBDO-alpha 99.52
d1q90r_39 ISP subunit from the cytochrome b6f complex, trans 99.05
d2e74d234 ISP subunit from the cytochrome b6f complex, trans 98.39
>d1rfsa_ b.33.1.1 (A:) ISP subunit from chloroplast cytochrome bf complex {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: All beta proteins
fold: ISP domain
superfamily: ISP domain
family: Rieske iron-sulfur protein (ISP)
domain: ISP subunit from chloroplast cytochrome bf complex
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=9e-34  Score=225.40  Aligned_cols=125  Identities=86%  Similarity=1.523  Sum_probs=114.2

Q ss_pred             eeecCCCCceeeecccccCCCCCccccccCCCCceEEEEecCCeEEEEEEeccCCCCCccCCccCCCCEEEcCCCCeeEc
Q 027005          105 TAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYN  184 (229)
Q Consensus       105 v~~d~~G~~v~~~~W~~~~~p~~~~~~~~~~g~p~~lv~~~dg~i~~~A~~~vCtHlGc~l~~~~~~~~~~CPcHGs~FD  184 (229)
                      +.+|..|+++...+|+....++++.+...+.+++..|++..|+...+||++++|||+||++.++..++.|+||||||+||
T Consensus         2 ~a~d~~gndi~~~~wl~~~~~G~~~l~~~~~g~~~~lvv~~d~~~~v~A~~~~C~H~g~~l~~~~~~~~~~Cp~Hg~~Fd   81 (127)
T d1rfsa_           2 IAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQYN   81 (127)
T ss_dssp             BCBCTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEETTTTEEECTTTCCEEE
T ss_pred             ccccccCCcceecceecccCCCcceeeeeecCCceEEEEEeCCCCEEEEEcCCCCCCCCCccCcccCCeEEcCCCCeEEC
Confidence            56788999999999987777777777777888999999887775555899999999999999988888999999999999


Q ss_pred             CCCceecCCCCCCCceEEEEEECCeEEEEeCcCCCCCCCCCCCCC
Q 027005          185 NQGRVVRGPAPLSLALAHANVENGKVVFVPWTETDFRTGEAPWWA  229 (229)
Q Consensus       185 ~sG~vv~GPap~~L~~~~v~v~~g~I~V~~~~~~~fr~~~~~~~~  229 (229)
                      .+|+++.||++++|+.|++++++|.|+|.++.|.|||.+.+|||+
T Consensus        82 ~~G~~~~~Pa~~~L~~~~v~v~~g~i~v~~~~~~~~r~~~~p~~~  126 (127)
T d1rfsa_          82 NQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWS  126 (127)
T ss_dssp             TTCCEEESSCCSCCCEEEEEEETTEEEEEECCSCCTTTSSCCSTT
T ss_pred             CCCCCCcCCCCCCcceEeEEEECCEEEEEcCCccCCcCCCCCccc
Confidence            999999999999999999999999999999999999999999996
>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f complex, soluble domain {Mastigocladus laminosus [TaxId: 83541]} Back     information, alignment and structure
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1riea_ b.33.1.1 (A:) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g8kb_ b.33.1.1 (B:) Arsenite oxidase Rieske subunit {Alcaligenes faecalis [TaxId: 511]} Back     information, alignment and structure
>d1nyka_ b.33.1.1 (A:) Soluble Rieske protein {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jm1a_ b.33.1.1 (A:) Rieske protein II (SoxF) {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Back     information, alignment and structure
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Back     information, alignment and structure
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Back     information, alignment and structure
>d1z01a1 b.33.1.2 (A:16-163) 2-oxo-1,2-dihydroquinoline 8-monooxygenase, oxygenase component OxoO {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1ulia1 b.33.1.2 (A:17-170) Biphenyl dioxygenase large subunit BphA1, N-terminal domain {Rhodococcus sp. (strain RHA1) [TaxId: 101510]} Back     information, alignment and structure
>d2b1xa1 b.33.1.2 (A:1-162) Naphthalene 1,2-dioxygenase alpha subunit, N-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]} Back     information, alignment and structure
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Back     information, alignment and structure
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]} Back     information, alignment and structure
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]} Back     information, alignment and structure