Citrus Sinensis ID: 027033

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccEEEEccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHcccHHHHHHHcHHHccHcHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEHEEcccccccEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEccHHHHHcccHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccccEEEEHHHccc
Coil and Loop (DISEMBL)
msslrnalprrahkeraqpqsrkkfgllekHKDYVIRAKAYHKKEESIRRLKEKaafrnpdefYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHsldnnpssrhvyFAEDREEAKEIKsqsgrkdalpdfddipdhikRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRkrklreeeivcptskAVYKWRSERKR
Flexible Loop (DISEMBL)
msslrnalprrahkeraqpqsrkkfgllekhkdYVIRakayhkkeesirrlkekaafrnpdefyfKMIKtktvdgvhrlEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTmlhsldnnpssRHVYFAEDREEAKeiksqsgrkdalpdfddipdhikrktaasyrelegrkKRVQELEKLymdmslhkelqkkgrkrklreeeivcptskavykwrserkr
Low Complexity Region (SEG)
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHkelqkkgrkrklreeeIVCPTSKAVYKWRSERKR
Disordered region (IsUnstruct)
**************************LLEKHKDYVIRAKAYHK*******L*EKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKL**********************************************************************************************************VC*****VY********
Disordered Region (DISOPRED)
************************FGLLEKHKDYVIRAKAYHKKEES***LKEKAAFRNPDEFYFKMI**************************KTQDIGYVLQ****************************YFAEDRE*******************************************************************************AVYKWRSERK*
Disordered Region (DISEMBL)
********************SRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAED**************DALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHK***********REEEIVCPTSKAVYKWRSERKR
Disordered Region (DISPRO)
****************AQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGR*RKLR*****CPTSKAVYKWRS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKxxxxxxxxxxxxxxxxxxxxxPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q8S1Z1	229	Probable U3 small nucleol	yes	no	1.0	1.0	0.711	5e-92
Q9M223	228	Probable U3 small nucleol	yes	no	0.995	1.0	0.650	2e-82
Q55C50	250	Probable U3 small nucleol	yes	no	0.908	0.832	0.391	8e-30
Q10106	249	Probable U3 small nucleol	yes	no	0.969	0.891	0.363	7e-28
Q9CZJ1	253	Probable U3 small nucleol	yes	no	0.938	0.849	0.348	2e-27
Q9Y3A2	253	Probable U3 small nucleol	yes	no	0.943	0.853	0.341	7e-27
Q8R5K5	253	Probable U3 small nucleol	no	no	0.982	0.889	0.334	1e-26
Q9W3C0	237	Probable U3 small nucleol	yes	no	0.598	0.578	0.404	3e-19
P34247	250	U3 small nucleolar RNA-as	yes	no	0.960	0.88	0.305	5e-18
A6ZZL7	250	U3 small nucleolar RNA-as	N/A	no	0.960	0.88	0.305	5e-18

>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2

 Score =  337 bits (863), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 201/229 (87%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN   ++HVYFAEDREE KEI+S+  +K +    D+IP  IKRKTA+SYRELE RK+
Sbjct: 121 HELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           RVQ+LEKLY DM+L KEL+K GRKRKLRE+EI   TS+ VYKWR++RKR
Sbjct: 181 RVQKLEKLYADMALQKELKKPGRKRKLREDEIENQTSRPVYKWRAQRKR 229

Involved in nucleolar processing of pre-18S ribosomal RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11 OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1

 Score =  305 bits (781), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 149/229 (65%), Positives = 187/229 (81%), Gaps = 1/229 (0%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NP
Sbjct: 1   MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L
Sbjct: 61  DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
               +  S RHVY+AEDREEA+E++ Q GR  +     +IP  IK+K   SYR+LEGRK 
Sbjct: 121 QCTGDQSSRRHVYYAEDREEARELEVQ-GRSKSDISTVEIPKDIKKKMDRSYRDLEGRKS 179

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           R ++LEKLY DMS+ KELQKKGRKRKLR++E++ P  KAVYKWR++RKR
Sbjct: 180 RAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPNGKAVYKWRADRKR 228

Involved in nucleolar processing of pre-18S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11 OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/248 (39%), Positives = 141/248 (56%), Gaps = 40/248 (16%)

Query: 1   MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
           MSS  LR  LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+
Sbjct: 1   MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query: 59  NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
           NPDEF +KMI +K VDGVH  E       +E+++ +KTQDI Y+  K +++  KIE+L  
Sbjct: 61  NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQA 119

Query: 119 MLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD-----FDDIPDHIKRK-- 167
            L  +D+   P+ + +Y     ++ KE+K+ S  K  D +PD        IP   K K  
Sbjct: 120 TLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPDAFNGSLSTIPKISKLKEG 175

Query: 168 ------------------TAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRK----R 205
                             TA SY+EL+ RK R  +L K  MD+S  K   K+G K    +
Sbjct: 176 SLVVNPKTAPTLGQLEAMTATSYKELKERKLRRDQLFKAEMDLSKSKIQLKRGTKSGVTK 235

Query: 206 KLREEEIV 213
           K+ ++E+V
Sbjct: 236 KVGKKEVV 243

Involved in nucleolar processing of pre-18S ribosomal RNA.

Dictyostelium discoideum (taxid: 44689)

>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC18G6.06 PE=3 SV=1

 Score =  124 bits (310), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/253 (36%), Positives = 134/253 (52%), Gaps = 31/253 (12%)

Query: 2   SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPD 61
           SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y  K++ ++RL+EKA  RNPD
Sbjct: 3   SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62

Query: 62  EFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLH 121
           EFY +M   KT +GV   + E +    + + ++KTQDIG++      ER KI+ L   +H
Sbjct: 63  EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH 122

Query: 122 SL----DNNPSSRHVYFAEDREEAKEIKSQS---------GRKDALPDFDDIPD------ 162
           ++    + N S +H  F ++ +EAK               GR +     D I +      
Sbjct: 123 TVGAHRNKNESRKHTIFVDNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNELTNQ 182

Query: 163 ------HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPT 216
                 H K K  A+  EL  R+KR ++L      + L + LQ KG ++K +        
Sbjct: 183 PFSGKLHSKLKEKAAT-ELLLRQKRDKKLAAAEERVELDRLLQGKGGRQKKK-----VVN 236

Query: 217 SKAVYKWRSERKR 229
            K VYKWR+ERKR
Sbjct: 237 GKPVYKWRNERKR 249

Involved in nucleolar processing of pre-18S ribosomal RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus musculus GN=Utp11l PE=2 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 29/244 (11%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT 70
           R H+ER+QP  RK+ GLLEK KDY +RA  YHKK++ +R L++KA  +NPDEFY+KM + 
Sbjct: 14  REHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTRA 73

Query: 71  KTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPS 128
           K  DGVH  +    + T E+L LM+TQDI Y+  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYFAEDREEAKEIKSQSGRKDALPDFDD-------------------IPD----HIK 165
            +HV+F + ++E +     +  + A P+  D                    P      I 
Sbjct: 134 KKHVFFFDTKKEVERFDVATHLQTA-PELVDRVYNRPRIETLQKERVKGATPQTGLKRIA 192

Query: 166 RKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRS 225
           ++    Y  L  R +R ++L  +   +   K+L  K +K K+++E +  P   A+Y++++
Sbjct: 193 KERQKQYDCLTQRIEREKQLFVVAQKIQTRKDLMDKTQKVKVKKETVNSP---AIYRFQT 249

Query: 226 ERKR 229
            RKR
Sbjct: 250 RRKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Mus musculus (taxid: 10090)

>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo sapiens GN=UTP11L PE=1 SV=2

 Score =  120 bits (301), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/243 (34%), Positives = 132/243 (54%), Gaps = 27/243 (11%)

Query: 11  RAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT 70
           R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM + 
Sbjct: 14  REHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTRV 73

Query: 71  KTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPS 128
           K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD      
Sbjct: 74  KLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQQ 133

Query: 129 SRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPD----------------------HIKR 166
           ++HV+F + ++E ++    +  + A    D + +                       I +
Sbjct: 134 NKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIAK 193

Query: 167 KTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSE 226
           +    Y  L  R +R ++L  +   +   K+L  K +K K+++E +  P   A+YK++S 
Sbjct: 194 ERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNSP---AIYKFQSR 250

Query: 227 RKR 229
           RKR
Sbjct: 251 RKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Homo sapiens (taxid: 9606)

>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus norvegicus GN=Utp11l PE=2 SV=1

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 138/254 (54%), Gaps = 29/254 (11%)

Query: 2   SSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRN 59
           ++ R A+   +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +N
Sbjct: 3   AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62

Query: 60  PDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTM 119
           PDEFY+KM + K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + 
Sbjct: 63  PDEFYYKMTRVKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSE 122

Query: 120 LHSLD--NNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPD--------------- 162
           LH LD      +RHV+F + ++E ++    +  + A    D + +               
Sbjct: 123 LHLLDFQGKQQNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKGV 182

Query: 163 -------HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCP 215
                   I ++    Y  L  R +R ++L  +   +   K+L  K +K K+++E +  P
Sbjct: 183 TNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNSP 242

Query: 216 TSKAVYKWRSERKR 229
              A+YK++S RKR
Sbjct: 243 ---AIYKFQSRRKR 253

Involved in nucleolar processing of pre-18S ribosomal RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila melanogaster GN=CG1789 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 86/141 (60%), Gaps = 4/141 (2%)

Query: 1   MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
           MSS +NA    ++ H+ER QP+SR+  G LEK KDY  RA    KK+++++ L  +A  +
Sbjct: 1   MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60

Query: 59  NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
           NPDEFY  MI +K  +  H  +   +++T E+L LM+TQD+ YV+ K   ER KIE+L  
Sbjct: 61  NPDEFYHHMINSKLSNDEHHEKDTKDEHTPEQLALMQTQDLKYVVMKRTMERKKIERLKA 120

Query: 119 MLHSLD--NNPSSRHVYFAED 137
            L  +D     +++ + F ED
Sbjct: 121 SLVDVDAIKGAANKRIKFDED 141

Involved in nucleolar processing of pre-18S ribosomal RNA.

Drosophila melanogaster (taxid: 7227)

>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1 SV=2

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 125/259 (48%), Gaps = 39/259 (15%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           M+ L + + ++ H+ER+Q  SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA  RNP
Sbjct: 1   MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNP 60

Query: 61  DEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIE 114
           DE+Y  M   KT      +   H  E E    + +++ L+KTQD  YV    Q E  K+E
Sbjct: 61  DEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLE 119

Query: 115 KLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQS---------GRKDALPDFDDIPDHIK 165
           K    L       S  H  F + RE+  E   +           R +     D +   I 
Sbjct: 120 KGAKQLMF---KSSGNHTIFVDSREKMNEFTPEKFFNTTSEMVNRSENRLTKDQLAQDIS 176

Query: 166 RKTAAS---------------YRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREE 210
               AS               +++++   +R  +L+++   M   +EL KKG K+K    
Sbjct: 177 NNRNASSIMPKESLDKKKLKKFKQVKQHLQRETQLKQVQQRMDAQRELLKKGSKKK---- 232

Query: 211 EIVCPTSKAVYKWRSERKR 229
            IV  + K  +KW+ +RKR
Sbjct: 233 -IVDSSGKISFKWKKQRKR 250

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 125/259 (48%), Gaps = 39/259 (15%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           M+ L + + ++ H+ER+Q  SR ++G LEKHKDYV RA+ +H+K+ +++ L+EKA  RNP
Sbjct: 1   MAKLVHDVQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNP 60

Query: 61  DEFYFKMIKTKT------VDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIE 114
           DE+Y  M   KT      +   H  E E    + +++ L+KTQD  YV    Q E  K+E
Sbjct: 61  DEYYHAMHSRKTDAKGLLISSRHGDE-EDESLSMDQVKLLKTQDSNYVRTLRQIELKKLE 119

Query: 115 KLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQS---------GRKDALPDFDDIPDHIK 165
           K    L       S  H  F + RE+  E   +           R +     D +   I 
Sbjct: 120 KGAKQLMF---KSSGNHTIFVDSREKMNEFTPEKFFNTTSEMVNRSENRLTKDQLAQDIS 176

Query: 166 RKTAAS---------------YRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREE 210
               AS               +++++   +R  +L+++   M   +EL KKG K+K    
Sbjct: 177 NNRNASSIMPKESLDKKKLKKFKQVKQHLQRETQLKQVQQRMDAQRELLKKGSKKK---- 232

Query: 211 EIVCPTSKAVYKWRSERKR 229
            IV  + K  +KW+ +RKR
Sbjct: 233 -IVDSSGKISFKWKKQRKR 250

Involved in nucleolar processing of pre-18S ribosomal RNA.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
147857564	229	hypothetical protein VITISV_023155 [Viti	1.0	1.0	0.781	1e-103
225439057	229	PREDICTED: probable U3 small nucleolar R	1.0	1.0	0.777	1e-102
255553233	231	U3 small nucleolar RNA-associated protei	1.0	0.991	0.755	1e-100
224137520	229	predicted protein [Populus trichocarpa]	1.0	1.0	0.772	1e-100
356524892	229	PREDICTED: probable U3 small nucleolar R	1.0	1.0	0.720	4e-93
115440601	229	Os01g0810000 [Oryza sativa Japonica Grou	1.0	1.0	0.711	3e-90
388510862	229	unknown [Lotus japonicus]	1.0	1.0	0.716	1e-88
217073874	229	unknown [Medicago truncatula]	1.0	1.0	0.698	2e-87
413952156	232	U3 small nucleolar RNA-associated protei	1.0	0.987	0.676	4e-87
242059027	232	hypothetical protein SORBIDRAFT_03g03760	1.0	0.987	0.672	6e-87

>gi|147857564|emb|CAN82884.1| hypothetical protein VITISV_023155 [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/229 (78%), Positives = 208/229 (90%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSS RNA+ RRA+KERAQP  RKKFGLLEKHKDYV+RA+A+HKKEE++++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKY+ EELMLMKTQD+GYVLQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLDN P++RHVY+AEDREEA+EI++QS R   LP  DD+P+HIKRKT+ASYRELE RK 
Sbjct: 121 HSLDNQPTNRHVYYAEDREEAREIQAQSSRGGNLPSLDDVPNHIKRKTSASYRELETRKS 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           RV +LEKLYMDM+L KELQK+GRKRKLRE+EIVCPTSK VYKWR+ERKR
Sbjct: 181 RVNDLEKLYMDMALQKELQKRGRKRKLREDEIVCPTSKPVYKWRAERKR 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439057|ref|XP_002265743.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11 [Vitis vinifera] gi|239056174|emb|CAQ58608.1| unknown gene [Vitis vinifera] gi|239056194|emb|CAQ58632.1| unknown protein / putative CGI-94 protein [Vitis vinifera] gi|296085811|emb|CBI31135.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/229 (77%), Positives = 207/229 (90%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSS RNA+ RRA+KERAQP  RKKFGLLEKHKDYV+RA+A+HKKEE++++LKEKAAFRNP
Sbjct: 1   MSSFRNAISRRAYKERAQPHLRKKFGLLEKHKDYVVRAQAFHKKEEALQKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKY+ EELMLMKTQD+GYVLQK+QSE+ KIEKLT ML
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYSPEELMLMKTQDMGYVLQKVQSEKKKIEKLTAML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLDN P++RHVY+AEDREEA+EI++QS R   LP  DD+P+HIKRKT+ASYRELE RK 
Sbjct: 121 HSLDNQPTNRHVYYAEDREEAREIQAQSSRGGNLPSLDDVPNHIKRKTSASYRELETRKN 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           RV +LEKLYMDM+L KELQK+GRKRKLRE+EI CPTSK VYKWR+ERKR
Sbjct: 181 RVNDLEKLYMDMALQKELQKRGRKRKLREDEIACPTSKPVYKWRAERKR 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553233|ref|XP_002517659.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis] gi|223543291|gb|EEF44823.1| U3 small nucleolar RNA-associated protein, putative [Ricinus communis]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/229 (75%), Positives = 205/229 (89%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR+AHKER+QPQSRKK+GLLEKHKDY++RAKA+HKKEE+++RLKEKAAFRNP
Sbjct: 1   MSSLRNAIPRKAHKERSQPQSRKKYGLLEKHKDYIVRAKAFHKKEEALQRLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMIKT+TVDGVHR E +ANKYT+EEL+LMKTQDIGY+LQKLQSE+ KIEKLT  L
Sbjct: 61  DEFYFKMIKTRTVDGVHRPESQANKYTEEELLLMKTQDIGYILQKLQSEKKKIEKLTATL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSL N PS+RH+Y+ EDREEAKE++SQS   + +P  + +P+ IKRK  +SYRELE RKK
Sbjct: 121 HSLKNQPSNRHIYYVEDREEAKELRSQSSANEIVPALEHVPEQIKRKMNSSYRELEARKK 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           R  +LEKLY DM+L KELQKKG+KRKLRE+EIVCPTSK +YKWRSERKR
Sbjct: 181 RANQLEKLYADMALQKELQKKGKKRKLREDEIVCPTSKPIYKWRSERKR 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137520|ref|XP_002322578.1| predicted protein [Populus trichocarpa] gi|222867208|gb|EEF04339.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (947), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 177/229 (77%), Positives = 201/229 (87%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR+AHKERAQPQ+RKKFGLLEKHKDYV RAKA+HKKEE++RRLKEKAA RNP
Sbjct: 1   MSSLRNAIPRKAHKERAQPQARKKFGLLEKHKDYVARAKAFHKKEETLRRLKEKAASRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYF MIK+KTVDGVHR + EANKYTQEEL+LMKTQDIGY+LQK QSE+ KIEKLT  L
Sbjct: 61  DEFYFGMIKSKTVDGVHRPQSEANKYTQEELLLMKTQDIGYILQKAQSEKKKIEKLTATL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HSLD  PSS+H+YFAEDREEAKEI+S+S          D+PD+IKRK A+SYRELE RK 
Sbjct: 121 HSLDGRPSSKHIYFAEDREEAKEIRSRSSENKMATTSVDVPDNIKRKIASSYRELEARKN 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           R  +LEK+YMDM+L KELQKKGRKRKLRE+EIVCPT+K V+KWRSERKR
Sbjct: 181 RANQLEKIYMDMALQKELQKKGRKRKLREDEIVCPTTKPVFKWRSERKR 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524892|ref|XP_003531062.1| PREDICTED: probable U3 small nucleolar RNA-associated protein 11-like [Glycine max]

 Score =  346 bits (888), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 165/229 (72%), Positives = 200/229 (87%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKER+QP SRKKFGLLEKHKDY+ RAKA+HKKE+++R+L+EKAA RN 
Sbjct: 1   MSSLRNAIPRRAHKERSQPSSRKKFGLLEKHKDYIQRAKAFHKKEDTLRKLREKAANRNE 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKM++TKTVDGVH+ E EANKYTQEELMLMKTQD+GY+LQK+QSERNKIE+LT  L
Sbjct: 61  DEFYFKMVRTKTVDGVHKPESEANKYTQEELMLMKTQDMGYILQKIQSERNKIERLTASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HS+DN P+++HV+FAEDREEAKE++S+  +        DIP  IKRKT  SY+ELE R+ 
Sbjct: 121 HSIDNQPANKHVFFAEDREEAKELESRHQKSKIPLTSGDIPAGIKRKTDRSYQELEARRG 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           R+ +LEK+YMDM++ KELQKKGRKRKLRE+EIVCPT+K VY WR+ERKR
Sbjct: 181 RLSQLEKIYMDMTMQKELQKKGRKRKLREDEIVCPTTKPVYMWRAERKR 229

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115440601|ref|NP_001044580.1| Os01g0810000 [Oryza sativa Japonica Group] gi|73621302|sp|Q8S1Z1.2|UTP11_ORYSJ RecName: Full=Probable U3 small nucleolar RNA-associated protein 11; Short=U3 snoRNA-associated protein 11 gi|55297663|dbj|BAD68234.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|55297664|dbj|BAD68235.1| putative CGI-94 protein [Oryza sativa Japonica Group] gi|113534111|dbj|BAF06494.1| Os01g0810000 [Oryza sativa Japonica Group] gi|215717047|dbj|BAG95410.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767926|dbj|BAH00155.1| unnamed protein product [Oryza sativa Japonica Group] gi|218189251|gb|EEC71678.1| hypothetical protein OsI_04152 [Oryza sativa Indica Group] gi|222619423|gb|EEE55555.1| hypothetical protein OsJ_03819 [Oryza sativa Japonica Group]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/229 (71%), Positives = 201/229 (87%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+ RRAHKERAQP+SRKKFGLLEKHKDY++RAKA+H+KEE+IR+LKEKA+FRNP
Sbjct: 1   MSSLRNAIQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI +KTVDG+HR + EANKYT++ELML+KT+D+GY+LQ +QSE+ KIEKL++ML
Sbjct: 61  DEFYFKMINSKTVDGIHRPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKLSSML 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN   ++HVYFAEDREE KEI+S+  +K +    D+IP  IKRKTA+SYRELE RK+
Sbjct: 121 HELDNKRPNKHVYFAEDREEVKEIQSRIEQKSSSLGLDNIPSRIKRKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           RVQ+LEKLY DM+L KEL+K GRKRKLRE+EI   TS+ VYKWR++RKR
Sbjct: 181 RVQKLEKLYADMALQKELKKPGRKRKLREDEIENQTSRPVYKWRAQRKR 229

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510862|gb|AFK43497.1| unknown [Lotus japonicus]

 Score =  331 bits (848), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 164/229 (71%), Positives = 194/229 (84%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNALPRRAHKERAQP SRKKFG LEKHKDYV RAKA+HKKEE++R L+EKAA RN 
Sbjct: 1   MSSLRNALPRRAHKERAQPSSRKKFGHLEKHKDYVERAKAFHKKEETLRILREKAANRNQ 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI+T+T DGVHR E EANKYTQ+ELMLMKTQD+GYVLQKLQSER KIEKL   L
Sbjct: 61  DEFYFKMIRTRTEDGVHRPESEANKYTQDELMLMKTQDLGYVLQKLQSERKKIEKLAASL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           HS+DN P+++H+ FAEDREEAKE++SQ  R +     D+I  +IKRK   SY+ELE R+ 
Sbjct: 121 HSIDNQPTNKHILFAEDREEAKELQSQYSRSEIPLISDNIHTNIKRKIDRSYKELEARRT 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           R+ +L+K+YMDMS+ KEL+K GRKRKLRE+EIV PT++ VYKWR+ERKR
Sbjct: 181 RLSQLQKMYMDMSMKKELRKNGRKRKLREDEIVSPTTEPVYKWRAERKR 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073874|gb|ACJ85297.1| unknown [Medicago truncatula]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 160/229 (69%), Positives = 192/229 (83%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PR AHKER QP SRKKFG+LEKHKDYV RAKA+H KE+++R L+EKAA RN 
Sbjct: 1   MSSLRNAVPRPAHKERPQPSSRKKFGILEKHKDYVERAKAFHVKEDTLRVLREKAANRNE 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKM+ +KTVDGVHR   E NKYTQ+EL+LMKTQD+GYVLQKLQSE+ K+EKL+  L
Sbjct: 61  DEFYFKMVNSKTVDGVHRPVNEDNKYTQDELILMKTQDMGYVLQKLQSEKKKVEKLSANL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H +D+ P+++HVYFAEDREEAKE+K Q  ++      D+IPD++KRKT  SY+ELE RK 
Sbjct: 121 HLIDHKPANKHVYFAEDREEAKELKQQLSKRKVPSTSDNIPDNLKRKTERSYKELEARKA 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERKR 229
           RV +LEK+YMDM+L KELQK GRKRKLREEEIV PT + VYKWR+ERKR
Sbjct: 181 RVSQLEKVYMDMALKKELQKNGRKRKLREEEIVNPTGRPVYKWRAERKR 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952156|gb|AFW84805.1| U3 small nucleolar RNA-associated protein 11 [Zea mays]

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/232 (67%), Positives = 197/232 (84%), Gaps = 3/232 (1%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKERAQP++RKKFGLLEKHKDYV+RA+AYH KE +I +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERAQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI ++TV G+HR + E NKYT+EEL+L+K +D+GY+LQ +QSE+ KIEKL++ L
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSVQSEKKKIEKLSSTL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN P ++HVYFAEDREEAKEI+S+ G+   +PD D+IP  IK+K A+SYRELE RK+
Sbjct: 121 HELDNKPQNKHVYFAEDREEAKEIQSRIGQSSNMPDLDNIPSRIKKKIASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLR---EEEIVCPTSKAVYKWRSERKR 229
           R+Q+LEKLY DM+L KEL+K GRKRKL+   +EE    TS+ VYKWR++RKR
Sbjct: 181 RLQKLEKLYADMALQKELKKPGRKRKLKLHEDEETDNQTSRPVYKWRAQRKR 232

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059027|ref|XP_002458659.1| hypothetical protein SORBIDRAFT_03g037600 [Sorghum bicolor] gi|241930634|gb|EES03779.1| hypothetical protein SORBIDRAFT_03g037600 [Sorghum bicolor]

 Score =  326 bits (835), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 198/232 (85%), Gaps = 3/232 (1%)

Query: 1   MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
           MSSLRNA+PRRAHKER+QP++RKKFGLLEKHKDYV+RA+AYH KE +I +LKEKAAFRNP
Sbjct: 1   MSSLRNAIPRRAHKERSQPEARKKFGLLEKHKDYVVRARAYHIKEATIAKLKEKAAFRNP 60

Query: 61  DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
           DEFYFKMI ++TV G+HR + E NKYT+EEL+L+K +D+GY+LQ +QSE+ KIEKL++ L
Sbjct: 61  DEFYFKMINSRTVGGIHRPKPEDNKYTEEELLLLKNKDMGYILQSIQSEKKKIEKLSSTL 120

Query: 121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
           H LDN P ++HVYFAEDREEAKEI+S+ G+ + +P  D+IP  IK+KTA+SYRELE RK+
Sbjct: 121 HELDNKPQNKHVYFAEDREEAKEIQSRIGQSNNMPGLDNIPSRIKKKTASSYRELEERKQ 180

Query: 181 RVQELEKLYMDMSLHKELQKKGRKRKLR---EEEIVCPTSKAVYKWRSERKR 229
           R+Q+LEKLY DM+L KEL+K GRKRKL+   +EE    TS+ VYKWR++RKR
Sbjct: 181 RLQKLEKLYADMALQKELKKPGRKRKLKLNEDEETDNQTSQPVYKWRAQRKR 232

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2103356	228	EDA14 "EMBRYO SAC DEVELOPMENT	0.995	1.0	0.585	1.3e-68
UNIPROTKB|E1BU24	253	UTP11L "Uncharacterized protei	0.585	0.529	0.492	3.4e-34
DICTYBASE|DDB_G0270230	250	utp11 "U3 snoRNP protein" [Dic	0.659	0.604	0.444	2.4e-33
ZFIN|ZDB-GENE-030131-8093	250	utp11l "UTP11-like, U3 small n	0.620	0.568	0.479	2.1e-32
MGI|MGI:1914455	253	Utp11l "UTP11-like, U3 small n	0.580	0.525	0.466	1.1e-31
UNIPROTKB|F1N165	253	UTP11L "Uncharacterized protei	0.650	0.588	0.434	1.1e-31
UNIPROTKB|F1SV29	253	UTP11L "Uncharacterized protei	0.650	0.588	0.421	3e-31
RGD|621412	253	Utp11l "UTP11-like, U3 small n	0.786	0.711	0.368	3.8e-31
UNIPROTKB|Q8R5K5	253	Utp11l "Probable U3 small nucl	0.786	0.711	0.368	3.8e-31
POMBASE|SPAC18G6.06	249	SPAC18G6.06 "U3 snoRNP-associa	0.615	0.566	0.427	6.1e-31

TAIR|locus:2103356 EDA14 "EMBRYO SAC DEVELOPMENT ARREST 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 134/229 (58%), Positives = 170/229 (74%)

Query:     1 MSSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNP 60
             MSSLRNA+PR AHKER+QP++RK+FG+LEKHKDY+IRA AYHKK+E+++ L++KAAF+NP
Sbjct:     1 MSSLRNAIPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFKNP 60

Query:    61 DEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTML 120
             DEF FKMI +KTVDG HR + E NKY+ EELM+MKTQDIGYV QK QSE+NKI+KLT  L
Sbjct:    61 DEFNFKMINSKTVDGRHRPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKLTASL 120

Query:   121 HSLDNNPSSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDHIKRKTAASYRELEGRKK 180
                 +  S RHVY+AEDREEA+E++ Q   K  +   + IP  IK+K   SYR+LEGRK 
Sbjct:   121 QCTGDQSSRRHVYYAEDREEARELEVQGRSKSDISTVE-IPKDIKKKMDRSYRDLEGRKS 179

Query:   181 RVQELEKLYMDMSLHXXXXXXXXXXXXXXXXIVCPTSKAVYKWRSERKR 229
             R ++LEKLY DMS+                 ++ P  KAVYKWR++RKR
Sbjct:   180 RAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPNGKAVYKWRADRKR 228

GO:0005634 "nucleus" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0009561 "megagametogenesis" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0000741 "karyogamy" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

UNIPROTKB|E1BU24 UTP11L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 346 (126.9 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 67/136 (49%), Positives = 96/136 (70%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ERAQP  RKK GLLEK KDY +RA+ YHKK+ ++R L++KA  +NPDEFYFKMI+
Sbjct:    13 QRQHRERAQPACRKKLGLLEKKKDYRLRAQDYHKKQNALRALQKKALDKNPDEFYFKMIR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
             T+  DGVH ++   ++ T E++ LMKTQD+ YV  K  +E  KIE+L + LH LD     
Sbjct:    73 TQLKDGVHVIKQPEDEVTPEQMKLMKTQDLKYVEMKRVAEAKKIERLKSELHLLDVEGKQ 132

Query:   128 SSRHVYFAEDREEAKE 143
              ++H +F + ++E +E
Sbjct:   133 PNKHTFFFDTKKEVQE 148

GO:0006364 "rRNA processing" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

DICTYBASE|DDB_G0270230 utp11 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 316 (116.3 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 72/162 (44%), Positives = 106/162 (65%)

Query:     1 MSS--LRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
             MSS  LR  LP+RA +ER QP+S KK G LE+ KDYV RAK Y+ K +++++LK +AAF+
Sbjct:     1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60

Query:    59 NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
             NPDEF +KMI +K VDGVH  E       +E+++ +KTQDI Y+  K +++  KIE+L  
Sbjct:    61 NPDEFNYKMISSKLVDGVHS-EISKTSLKKEQIIDIKTQDILYLQSKRRADDKKIERLQA 119

Query:   119 MLHSLDNN--PSSRHVYFAEDREEAKEIKSQSGRK--DALPD 156
              L  +D+   P+ + +Y     ++ KE+K+ S  K  D +PD
Sbjct:   120 TLQYMDSGLEPTEQIIYV----DDEKEVKNFSATKYFDTVPD 157

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030515 "snoRNA binding" evidence=ISS

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-030131-8093 utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein (yeast)" [Danio rerio (taxid:7955)]

 Score = 327 (120.2 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
 Identities = 69/144 (47%), Positives = 94/144 (65%)

Query:     1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFR 58
             MSS R AL   +R HKER+Q   RK  GLLEK KDY +RA  YH+KE++I  L++KA  +
Sbjct:     1 MSSFRKALKSKQRDHKERSQLGFRKHLGLLEKKKDYKLRADDYHRKEKTILALRKKAMDK 60

Query:    59 NPDEFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTT 118
             NPDEF FKMI  +  DGVH    +  + T+E+  +M+TQDI YV  K  SE  KIE++ +
Sbjct:    61 NPDEFNFKMIHNQLKDGVHMAIRKDEEMTEEQKKVMRTQDIRYVEMKRVSEMKKIERMKS 120

Query:   119 MLHSLDNNPSSRHVYFAEDREEAK 142
              LH LD    ++HV+F + ++E K
Sbjct:   121 ELHFLDEKKKNKHVFFLDTKKEVK 144

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1914455 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Mus musculus (taxid:10090)]

 Score = 326 (119.8 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 63/135 (46%), Positives = 90/135 (66%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK+ GLLEK KDY +RA  YHKK++ +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH  +    + T E+L LM+TQDI Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 AKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAK 142
               +HV+F + ++E +
Sbjct:   133 QKKHVFFFDTKKEVE 147

GO:0003674 "molecular_function" evidence=ND

GO:0005615 "extracellular space" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007399 "nervous system development" evidence=ISO

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=ISO

UNIPROTKB|F1N165 UTP11L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 321 (118.1 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 66/152 (43%), Positives = 96/152 (63%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y KK+E +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQDI Y+  K  +E  KIE+L   LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDIKYIEMKRVAEAKKIERLKAELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDD 159
              ++HV+F + ++E ++    +  + A P+  D
Sbjct:   133 QNKHVFFFDTKKEVEQFDIATHLRTA-PELVD 163

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

UNIPROTKB|F1SV29 UTP11L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 317 (116.6 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 64/152 (42%), Positives = 96/152 (63%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R H+ER+QP  RK  GLLEK KDY +RA  Y  K+E +R L++KA  +NPDEFY+KM +
Sbjct:    13 QREHRERSQPSFRKHLGLLEKKKDYKLRADDYRHKQEYLRALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHVIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDD 159
              ++HV+F + ++E ++    +  + A P+  D
Sbjct:   133 QNKHVFFFDTKKEVEQFDIATHLRTA-PELVD 163

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

RGD|621412 Utp11l "UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 69/187 (36%), Positives = 110/187 (58%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDI---P--DHIKRKTAASYRELEGRKKRV 182
              +RHV+F + ++E ++    +  + A    D +   P  + ++++         G K+  
Sbjct:   133 QNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIA 192

Query:   183 QELEKLY 189
             +E +K Y
Sbjct:   193 KERQKQY 199

GO:0005615 "extracellular space" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0032040 "small-subunit processome" evidence=IEA

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=IEA

UNIPROTKB|Q8R5K5 Utp11l "Probable U3 small nucleolar RNA-associated protein 11" [Rattus norvegicus (taxid:10116)]

 Score = 315 (115.9 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 69/187 (36%), Positives = 110/187 (58%)

Query:    10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
             +R ++ER+QP  RK  GLLEK KDY +RA  Y KK+E ++ L++KA  +NPDEFY+KM +
Sbjct:    13 QREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKNPDEFYYKMTR 72

Query:    70 TKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNP 127
              K  DGVH ++    + T E+L LM+TQD+ Y+  K  +E  KIE+L + LH LD     
Sbjct:    73 VKLQDGVHIIKETKEEVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKSELHLLDFQGKQ 132

Query:   128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDI---P--DHIKRKTAASYRELEGRKKRV 182
              +RHV+F + ++E ++    +  + A    D +   P  + ++++         G K+  
Sbjct:   133 QNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKGVTNQTGLKRIA 192

Query:   183 QELEKLY 189
             +E +K Y
Sbjct:   193 KERQKQY 199

GO:0032040 "small-subunit processome" evidence=IEA

POMBASE|SPAC18G6.06 SPAC18G6.06 "U3 snoRNP-associated protein Utp11 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 299 (110.3 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
 Identities = 62/145 (42%), Positives = 92/145 (63%)

Query:     2 SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPD 61
             SS +NA  R+ H+ERAQP  R+K+GLLEK KDY  RA+ Y  K++ ++RL+EKA  RNPD
Sbjct:     3 SSFKNAGQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALERNPD 62

Query:    62 EFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLH 121
             EFY +M   KT +GV   + E +    + + ++KTQDIG++      ER KI+ L   +H
Sbjct:    63 EFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILKTQDIGWIRHHRNVERAKIDHLEQQMH 122

Query:   122 SL----DNNPSSRHVYFAEDREEAK 142
             ++    + N S +H  F ++ +EAK
Sbjct:   123 TVGAHRNKNESRKHTIFVDNVKEAK 147

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005732 "small nucleolar ribonucleoprotein complex" evidence=ISS

GO:0005819 "spindle" evidence=IDA

GO:0030490 "maturation of SSU-rRNA" evidence=ISS

GO:0030515 "snoRNA binding" evidence=ISS

GO:0032040 "small-subunit processome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34247	UTP11_YEAST	No assigned EC number	0.3050	0.9606	0.88	yes	no
Q10106	UTP11_SCHPO	No assigned EC number	0.3636	0.9694	0.8915	yes	no
Q9M223	UTP11_ARATH	No assigned EC number	0.6506	0.9956	1.0	yes	no
Q9Y3A2	UTP11_HUMAN	No assigned EC number	0.3415	0.9432	0.8537	yes	no
Q9CZJ1	UTP11_MOUSE	No assigned EC number	0.3483	0.9388	0.8498	yes	no
Q55C50	UTP11_DICDI	No assigned EC number	0.3911	0.9082	0.832	yes	no
Q8S1Z1	UTP11_ORYSJ	No assigned EC number	0.7117	1.0	1.0	yes	no
Q09462	UTP11_CAEEL	No assigned EC number	0.3146	0.9781	0.8549	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	26N20_60	SubName- Full=Chromosome chr8 scaffold_68, whole genome shotgun sequence; (229 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034559001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (840 aa)				•	•		•		0.790
	GSVIVG00021672001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (315 aa)				•	•		•		0.789
	GSVIVG00005498001	SubName- Full=Putative uncharacterized protein (Chromosome chr13 scaffold_152, whole genome sho [...] (293 aa)				•			•		0.788
	GSVIVG00018638001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (452 aa)				•			•		0.785
	GSVIVG00007719001	SubName- Full=Chromosome chr3 scaffold_199, whole genome shotgun sequence; (387 aa)				•			•		0.781
	GSVIVG00028481001	SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (316 aa)				•			•		0.781
	GSVIVG00038090001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (182 aa)				•			•		0.776
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•			•		0.760
	GSVIVG00018070001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (540 aa)				•			•		0.749
	GSVIVG00038815001	SubName- Full=Chromosome chr5 scaffold_98, whole genome shotgun sequence; (1139 aa)				•			•		0.745

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam03998	239	pfam03998, Utp11, Utp11 protein	4e-56
COG5223	240	COG5223, COG5223, Uncharacterized conserved protei	3e-23

>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein

 Score =  178 bits (453), Expect = 4e-56
 Identities = 101/241 (41%), Positives = 138/241 (57%), Gaps = 23/241 (9%)

Query: 10  RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIK 69
           RR H+ER+QP+SRK  GLLEK KDY +RAK YHKKE++++ LKEKAA RNPDEFYF MI 
Sbjct: 1   RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60

Query: 70  TKTVDGVHRLE-GEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNN-P 127
           +KT DGVH L+  E    ++E++ L+KTQD+ YV  K Q+E  KIEKL   LH  D+   
Sbjct: 61  SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSA 120

Query: 128 SSRHVYFAEDREEAKEIKSQSGRKDALPDFDDIPDH-------------------IKRKT 168
             +H+ F +D EE K               D   +                      +K 
Sbjct: 121 GPKHIVFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKK 180

Query: 169 AASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVYKWRSERK 228
              Y+EL+ RK+R ++L+K+   + L +EL KKG+ +K +   +     K VYKW+ ERK
Sbjct: 181 RKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKK--IVKDKDGKVVYKWKKERK 238

Query: 229 R 229
           R
Sbjct: 239 R 239

This protein is found to be part of a large ribonucleoprotein complex containing the U3 snoRNA. Depletion of the Utp proteins impedes production of the 18S rRNA, indicating that they are part of the active pre-rRNA processing complex. This large RNP complex has been termed the small subunit (SSU) processome. Length = 239

>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function unknown]

 Score = 93.6 bits (232), Expect = 3e-23
 Identities = 76/248 (30%), Positives = 112/248 (45%), Gaps = 30/248 (12%)

Query: 2   SSLRNALPRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPD 61
                   R+ H+ER QP+ R+K+G LEK KDYV RA+  +KK++ +++L+EKA  RNPD
Sbjct: 3   LGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPD 62

Query: 62  EFYFKMIKTKTVDGVHRLEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLH 121
           E+Y  M   KT  GV  +  E      +   ++KTQD      + + ER K     T + 
Sbjct: 63  EYYHGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIK 122

Query: 122 SLDNNPSSRHVYFAEDREEAKE--------------------IKSQSGRKDALPDFDDIP 161
             +   SS H  F + R   KE                    ++      + L D     
Sbjct: 123 FEE---SSLHTIFVDMRFGQKEFIPEEFFRTTEELVVRRENRLEKDQIENNELEDSVFSG 179

Query: 162 DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKAVY 221
               +    +  EL  R+KR ++L      + L + LQ KG K+K+          K VY
Sbjct: 180 KLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKKKVVN-------GKPVY 232

Query: 222 KWRSERKR 229
           KWR+ERKR
Sbjct: 233 KWRNERKR 240

Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PF03998	243	Utp11: Utp11 protein; InterPro: IPR007144 A large	100.0
KOG3237	250	consensus Uncharacterized conserved protein [Funct	100.0
COG5223	240	Uncharacterized conserved protein [Function unknow	100.0

>PF03998 Utp11: Utp11 protein; InterPro: IPR007144 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]

Probab=100.00  E-value=3.6e-75  Score=515.92  Aligned_cols=216  Identities=49%  Similarity=0.770  Sum_probs=195.2

Q ss_pred             cccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccC-CcccccCC-CCCCC
Q 027033           10 RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVD-GVHRLEGE-ANKYT   87 (229)
Q Consensus        10 rr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~-G~h~~~~~-~~~lt   87 (229)
                      ||+|+|||||++|+|||||||||||++||+|||+|+++|+.|++||++||||||||+|||+++.+ |+|+..++ ++.+|
T Consensus         1 rr~HrERsQP~~R~~lGlLEKkKDY~lRA~dy~~K~~~Lk~Lr~KA~~RNpDEFyf~M~~sk~~~~G~h~~~~~~~~~~~   80 (243)
T PF03998_consen    1 RRNHRERSQPASRKKLGLLEKKKDYKLRAKDYHKKEAKLKRLREKAANRNPDEFYFGMINSKTDDDGVHVEKREENEELS   80 (243)
T ss_pred             CCcccccCChHHhhhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHhcccCCCCeeccCccccccCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999 99999887 78999


Q ss_pred             HHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CCeEEEecChHHHHH-------------hhhhcCCCC
Q 027033           88 QEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPS--SRHVYFAEDREEAKE-------------IKSQSGRKD  152 (229)
Q Consensus        88 ~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~~~~~--nkH~vFvD~~~e~~~-------------~~~~~nr~~  152 (229)
                      +++++||+|||++||+++++++.++|++|+++||++++..+  |+|||||||++|+++             +++.+|+|+
T Consensus        81 ~e~~~llkTQD~~Yv~~~~~~e~kKIekL~~~l~~~~~~~~~~~kh~vFvD~~~e~~~f~~~~~~~t~~e~~~~~~nr~~  160 (243)
T PF03998_consen   81 KEQVKLLKTQDLNYVRTKRQIERKKIEKLQSELHLLDGKSSGKNKHIVFVDSEEEAKEFDPAEYFDTDPELLDRRENRPK  160 (243)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCCceEEecCchHHHhccHHHhhccchhhhcccccccc
Confidence            99999999999999999999999999999999999986554  599999999999886             457788888


Q ss_pred             CCCCCC-CC-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCcceecccccCCCCCceee
Q 027033          153 ALPDFD-DI-------PDHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKG--RKRKLREEEIVCPTSKAVYK  222 (229)
Q Consensus       153 ~~~l~~-~~-------~~~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg--~kkKv~~~~~g~~~~~~vyk  222 (229)
                      .++|.. .+       ...+...+...|++|.+|++|+++|..|+++|+++++||++|  ++++++++.+    ++|||+
T Consensus       161 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~eL~~r~~R~k~L~~~~~~lelqr~lm~kg~~~k~k~~~~~~----~~~vyk  236 (243)
T PF03998_consen  161 KDQLEEESLPEEEREAKKKLEKKREKLYKELEARLEREKELKKAEQELELQRALMKKGKKKKKKIKGGKN----GAPVYK  236 (243)
T ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeccCCCC----CCceEE
Confidence            888722 22       225677889999999999999999999999999999999999  5555655433    499999


Q ss_pred             ecccccC
Q 027033          223 WRSERKR  229 (229)
Q Consensus       223 wk~eRKr  229 (229)
                      |++||||
T Consensus       237 wk~eRKr  243 (243)
T PF03998_consen  237 WKRERKR  243 (243)
T ss_pred             eecccCC
Confidence            9999997

This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp11, a large ribonuclear protein that associates with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome

>KOG3237 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.9e-74  Score=502.21  Aligned_cols=225  Identities=48%  Similarity=0.738  Sum_probs=208.8

Q ss_pred             Ccccccccc--cccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccCCccc
Q 027033            1 MSSLRNALP--RRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHR   78 (229)
Q Consensus         1 MSSlrnavk--rr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~   78 (229)
                      ||||+||++  |++|||||||.+|++||+|||||||++||.|||+|+++|+.|+++|+++|||||||+|+|+++.||+|+
T Consensus         1 mss~~~a~ks~rk~HRERsQP~~Rrk~G~LEKkKDY~~RA~dy~kKq~tLK~LrekA~eKNpDEfyh~M~~~K~~dG~hi   80 (250)
T KOG3237|consen    1 MSSFVNASKSRRKVHRERSQPEARRKYGFLEKKKDYKKRAQDYHKKQDTLKKLREKALEKNPDEFYHKMHNSKTKDGRHI   80 (250)
T ss_pred             CcchhhcchhhhhHHHhhcChhHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhhccccCCccc
Confidence            999999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccC--CCCCCCeEEEecChHHHHH-------------
Q 027033           79 LEGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLD--NNPSSRHVYFAEDREEAKE-------------  143 (229)
Q Consensus        79 ~~~~~~~lt~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~--~~~~nkH~vFvD~~~e~~~-------------  143 (229)
                      +..+.+++|+|||+||+||||+||.+++++|.+|||+|.++||+++  .+.+|+||+||||.+|+++             
T Consensus        81 ~k~e~~e~t~eqlklmktQDi~YV~~kr~~ErkKIerlka~L~~~~~~~~~s~kH~~F~d~~~ea~~Fdp~~~f~tt~el  160 (250)
T KOG3237|consen   81 EKDEVDEPTMEQLKLMKTQDIGYVRMKRQRERKKIERLKAQLHCVDRNKGESNKHTKFVDDREEAKSFDPAKFFQTTLEL  160 (250)
T ss_pred             cccccccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccccccccccccCceeEEeccHHHHhccChHHHhcccHHH
Confidence            9987789999999999999999999999999999999999999998  6778999999999999976             


Q ss_pred             hhhhcCCCCCCCCCCC-------Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecccccCC
Q 027033          144 IKSQSGRKDALPDFDD-------IP-DHIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCP  215 (229)
Q Consensus       144 ~~~~~nr~~~~~l~~~-------~~-~~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg~kkKv~~~~~g~~  215 (229)
                      +++.+|++..+++..+       .| ..+.+.+...|.+|..|++|+++|.+|++.|++++.|+++ +++++++   +++
T Consensus       161 v~R~~nr~~keei~~~~~~~~~~~~~k~~~k~~~k~~~eL~kR~eR~k~L~~v~qkv~l~k~L~~k-~~~k~Kk---~~v  236 (250)
T KOG3237|consen  161 VGRSENRLKKEEIQKEISKATSPMPKKSLDKKKQKRYNELKKRREREKKLNVVEQKVELQKELQKK-KKRKVKK---KTV  236 (250)
T ss_pred             hhhhhhhhhHHHHHHHHHhccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccch---hhc
Confidence            5788999998887111       12 2567888999999999999999999999999999999988 5667776   578


Q ss_pred             CCCceeeecccccC
Q 027033          216 TSKAVYKWRSERKR  229 (229)
Q Consensus       216 ~~~~vykwk~eRKr  229 (229)
                      +|+|||+|.++|||
T Consensus       237 ~~~~vyk~~~erkr  250 (250)
T KOG3237|consen  237 DSPAVYKWRYERKR  250 (250)
T ss_pred             cchhhhcchhhccC
Confidence            88999999999986

>COG5223 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=6.9e-55  Score=373.56  Aligned_cols=219  Identities=35%  Similarity=0.442  Sum_probs=197.5

Q ss_pred             Cccccccc-ccccccccCCcchhhcccccccchhHHHHHHHHhHHHHHHHHHHHHHHhhCCCcchhhhhhccccCCcccc
Q 027033            1 MSSLRNAL-PRRAHKERAQPQSRKKFGLLEKHKDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKTKTVDGVHRL   79 (229)
Q Consensus         1 MSSlrnav-krr~HrERsQp~~R~~lGlLEKkKDY~~RA~dy~~K~~~lk~L~~KA~~rNpDEFyf~M~~~k~~~G~h~~   79 (229)
                      ||+.-+.| +|++|+||+||-+|++||+|||||||+.||.|||.|++.|+.||++|+.||||||||+|++.+|.+|+.++
T Consensus         1 Ms~~f~~v~qrK~hrERtQp~~RrkyG~LEK~KDyvkRaqd~~~kq~~lk~lrEka~ernpdEyyh~mhs~Ktd~gv~~~   80 (240)
T COG5223           1 MSLGFTKVPQRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARERNPDEYYHGMHSVKTDGGVSSI   80 (240)
T ss_pred             CCcccccchHhhhHHHhcCcchhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChHHHHHHhhhhcccCCccce
Confidence            78644445 79999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCCCHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEecChHHHHH-------------hhh
Q 027033           80 EGEANKYTQEELMLMKTQDIGYVLQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKE-------------IKS  146 (229)
Q Consensus        80 ~~~~~~lt~e~~kLlKTQDl~Yv~~~r~~e~kKIekL~~~L~~~~~~~~nkH~vFvD~~~e~~~-------------~~~  146 (229)
                      .+++++++.|++++++|||++|+++.++.|..+++.+..+++|.   .++.||||||+..++++             +.+
T Consensus        81 ~ReDe~~~md~~KmlktqD~~~~R~~r~lEr~k~~~~~~qi~f~---es~~htifvD~r~~~kef~peeFf~tt~elV~r  157 (240)
T COG5223          81 YREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCGTQIKFE---ESSLHTIFVDMRFGQKEFIPEEFFRTTEELVVR  157 (240)
T ss_pred             eccccchHHHHHHHHHhhhhHHHHHHHHHHHhCCcchhceeeee---ccccchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999994   56799999999988765             467


Q ss_pred             hcCCCCCCCCCC-----C-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcceecccccCCCCCc
Q 027033          147 QSGRKDALPDFD-----D-IPD-HIKRKTAASYRELEGRKKRVQELEKLYMDMSLHKELQKKGRKRKLREEEIVCPTSKA  219 (229)
Q Consensus       147 ~~nr~~~~~l~~-----~-~~~-~~~~~~~~~y~eL~~r~~R~k~L~~~~~~Lelqk~lm~Kg~kkKv~~~~~g~~~~~~  219 (229)
                      ..||...++.+.     . ++. ...+.+.++..+|..|..|.++|..|++.+++++.|.+||.++||+.   |    .|
T Consensus       158 ~enrl~kdqi~nNel~~sv~~~~~~~k~k~k~~~el~~~~krd~kl~~~eer~e~~r~l~~kg~kkkvv~---~----k~  230 (240)
T COG5223         158 RENRLEKDQIENNELEDSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGKKKVVN---G----KP  230 (240)
T ss_pred             HHHHHHHhhhcccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccC---C----cc
Confidence            778877766522     1 233 34667888999999999999999999999999999999999999986   5    99


Q ss_pred             eeeecccccC
Q 027033          220 VYKWRSERKR  229 (229)
Q Consensus       220 vykwk~eRKr  229 (229)
                      ||+|+.+|+|
T Consensus       231 ~~~~rn~~~r  240 (240)
T COG5223         231 VYKWRNERKR  240 (240)
T ss_pred             cccccccccC
Confidence            9999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 25/146 (17%)

Query: 32  KDYVIRAKAYHKKEESIRRLKEKAAFRNPDEFYFKMIKT-KTVDGVHRLEGEA-NKYTQE 89
           K  V R + Y K  +++  L+        +     ++ + KT      +  +    Y  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTW-----VALDVCLSYKVQ 177

Query: 90  ELMLMKTQDIGYV-LQKLQSERNKIEKLTTMLHSLDNNPSSRHVYFAEDREEAKEIKSQS 148
             M  K   I ++ L+   S    +E L  +L+ +D N +SR  + +  +     I+++ 
Sbjct: 178 CKMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 149 GR-------KDALPDFDDI--PDHIK 165
            R       ++ L    ++       
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWN 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00