Citrus Sinensis ID: 027067

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS
Secondary Structure (PSIPRED)
cccccccccEEEEccEEEEEccEEEEEcccEEEEcccEEEEEccccccHHHHHHHHHccccccccEEEEccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEccccccccccEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEccEccccccEEEcccEEEEccccEEEEEccccccHHHHHHHHHHHccccccEEEEcccEcccHHHHHHHHHHHcHHEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHcccHHHccccHHHccHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHHHHHcEEEEEcccEEEEccccccccccc
Coil and Loop (DISEMBL)
mtlrkpplprlllknVSCMRNAQQILRHVNisihdggalvltgtngsgkSTFLRMLagfskpsageilwnghditqsgiFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEvlegkqgnslpalelmgLGRLAKEKARMLSMGQRKRLQLARLLAIDrpiwlldepsvaldydgVRLLEYIIAEHRKKGGIVIVATHLpiqiedamnlrlpprfprrmTLVDMLDRADIS
Flexible Loop (DISEMBL)
mtlrkpplprlLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEvlegkqgnslpalELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDrpiwlldepsvalDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQiedamnlrlpprfprrmtlvdmldradis
Low Complexity Region (SEG)
MTlrkpplprlllkNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGqrkrlqlarllaIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS
Disordered region (IsUnstruct)
**********LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTL**********
Disordered Region (DISOPRED)
**********LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDM*******
Disordered Region (DISEMBL)
MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS
Disordered Region (DISPRO)
*******LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDML******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q9C8T1	229	ABC transporter I family	yes	no	1.0	1.0	0.886	1e-117
Q2VZJ1	217	Cytochrome c biogenesis A	yes	no	0.847	0.894	0.412	3e-36
Q6NDA6	200	Cytochrome c biogenesis A	yes	no	0.816	0.935	0.373	2e-30
Q13DS7	200	Cytochrome c biogenesis A	yes	no	0.799	0.915	0.370	6e-30
Q2J3F7	200	Cytochrome c biogenesis A	yes	no	0.816	0.935	0.352	1e-29
Q2Y9Q1	206	Cytochrome c biogenesis A	yes	no	0.873	0.970	0.360	2e-29
Q5FQN4	211	Cytochrome c biogenesis A	yes	no	0.825	0.895	0.373	6e-29
Q32I01	207	Cytochrome c biogenesis A	yes	no	0.834	0.922	0.335	1e-28
Q1MAL7	215	Cytochrome c biogenesis A	yes	no	0.777	0.827	0.382	2e-28
Q92L55	207	Cytochrome c biogenesis A	yes	no	0.851	0.942	0.373	1e-27

>sp|Q9C8T1|AB1I_ARATH ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1

 Score =  422 bits (1085), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/229 (88%), Positives = 219/229 (95%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M++R+P +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAGEILWNGHDITQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G + 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PALELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIVIVATHLPI IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 4EC: 1

>sp|Q2VZJ1|CCMA_MAGSA Cytochrome c biogenesis ATP-binding export protein CcmA OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=ccmA PE=3 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 123/201 (61%), Gaps = 7/201 (3%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
           KN++C+R  + +   +  S+  GGALVL G NGSGKS+ LR+LAG  KP+ G + WNG  
Sbjct: 9   KNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEA 68

Query: 74  ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSL-PALELMGL 128
           + +    H  +   ++L   DAVK   +V +N++++  L      + G ++  AL   GL
Sbjct: 69  LAEDPEAHAART--HYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGL 126

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
            RLA    +MLS GQ++R  LARLLA   P+WLLDEP+ ALD   +++LE ++AEHR  G
Sbjct: 127 ARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLAEHRAAG 186

Query: 189 GIVIVATHLPIQIEDAMNLRL 209
           G+V+++TH  I +  A  L L
Sbjct: 187 GMVVLSTHADINMPGAQELHL 207

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q6NDA6|CCMA_RHOPA Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=ccmA PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 72/193 (37%), Positives = 112/193 (58%), Gaps = 6/193 (3%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           RL  +++ C+R  +++   +      G AL L G NG+GK++ LR++AG   P AG I  
Sbjct: 2   RLSGRDLRCVRGGREVFAGLAFEASGGEALALVGHNGAGKTSLLRLIAGLLTPEAGTITL 61

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGL 128
           +G +            Q ++L  +DA+K   +V +N+  W + L G++ +    ++ +GL
Sbjct: 62  DGGEPDTP-----VAEQAHYLGHRDALKPSLSVGENLGFWRDFLGGERTDLSAGIKAVGL 116

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
           G  A+  A  LS GQR+RL +ARLL + RPIWLLDEP+ ALD  G  L   ++ EH  +G
Sbjct: 117 GHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVKGQELFVGLMQEHLARG 176

Query: 189 GIVIVATHLPIQI 201
           GI++ ATH P+ I
Sbjct: 177 GIIVAATHTPLGI 189

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) (taxid: 258594)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q13DS7|CCMA_RHOPS Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhodopseudomonas palustris (strain BisB5) GN=ccmA PE=3 SV=1

 Score =  130 bits (328), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 6/189 (3%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
           + + C+R  +++   +      G AL L G NG+GK++ LR++AG   P+AG I ++G +
Sbjct: 6   RGLRCVRGGREVFDGLGFEAAGGEALALVGHNGAGKTSLLRLIAGLLAPAAGTITFDGGE 65

Query: 74  ITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLGRLA 132
                       Q ++L  +DA+K   +V +N+  W E L G+  +   A+E +GL   A
Sbjct: 66  PDTP-----VAEQAHYLGHRDALKPSLSVTENLAFWREFLGGEPTDLPAAIEAVGLAHAA 120

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
           +  A  LS GQR+RL +ARLL + RPIWLLDEP+ ALD  G      ++++H   GG++I
Sbjct: 121 ELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQEAFGRLMSDHLAGGGLII 180

Query: 193 VATHLPIQI 201
            ATH P+ I
Sbjct: 181 AATHSPLGI 189

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Rhodopseudomonas palustris (strain BisB5) (taxid: 316057)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q2J3F7|CCMA_RHOP2 Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhodopseudomonas palustris (strain HaA2) GN=ccmA PE=3 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 113/193 (58%), Gaps = 6/193 (3%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           RL  + + C+R  +++   ++     G AL L G NG+GK++ LR++AG   P+AG I +
Sbjct: 2   RLSGRGLRCVRGGREVFDGLDFEAAGGEALALIGRNGAGKTSLLRLIAGLLMPAAGSIDF 61

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGL 128
           +G +            Q ++L  +DA+K   +V++N+  W + L G+  + +  +  +GL
Sbjct: 62  DGSEPDT-----PVAEQAHYLGHRDALKPSLSVVENLAFWRDFLGGEPTDLMAGITAVGL 116

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
              A+  A  LS GQR+RL +ARLL + RPIWLLDEP+ ALD  G  +   ++++H   G
Sbjct: 117 SHAAELPAAYLSAGQRRRLSIARLLVVRRPIWLLDEPTSALDVRGQAMFARLMSDHLASG 176

Query: 189 GIVIVATHLPIQI 201
           G+++ ATH P+ I
Sbjct: 177 GLIVAATHSPLGI 189

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Rhodopseudomonas palustris (strain HaA2) (taxid: 316058)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q2Y9Q1|CCMA_NITMU Cytochrome c biogenesis ATP-binding export protein CcmA OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=ccmA PE=3 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 5/205 (2%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           +P L   +++C+R  +++   VN  +  GG + + G NGSGK++ LRML G + P+ GEI
Sbjct: 1   MPTLEGIDLTCIRGDRKLFSGVNFLLESGGLMQVQGPNGSGKTSLLRMLCGLASPAEGEI 60

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALE 124
            W+G  I   G    Y   + +L     VK+  T ++N++    L G    +  +  AL+
Sbjct: 61  RWDGTQIRSLG--GDYFGAMTYLGHLGGVKDDLTAIENLRISSALGGVDLDERKAHDALQ 118

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
            MGLG      A++LS GQR+R+ LARLL     +W+LDEP  ALD   V+L++ +I  H
Sbjct: 119 HMGLGGRELLPAKVLSQGQRRRVTLARLLVCGTVLWILDEPLTALDTSAVKLVQGLIERH 178

Query: 185 RKKGGIVIVATHLPIQIEDAMNLRL 209
            + GG++++ TH  I+I  A   RL
Sbjct: 179 LEHGGMIVMTTHQEIEIAGAAIQRL 203

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q5FQN4|CCMA_GLUOX Cytochrome c biogenesis ATP-binding export protein CcmA OS=Gluconobacter oxydans (strain 621H) GN=ccmA PE=3 SV=1

 Score =  127 bits (319), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 120/209 (57%), Gaps = 20/209 (9%)

Query: 5   KPPLP-RLL-LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62
            PP+P RLL +++V+  R  + +L  V++++  G A++LTG NG+GKST LR ++G  +P
Sbjct: 9   TPPVPGRLLDVEDVTVFRGDRLVLDGVSLTLDAGDAMILTGPNGAGKSTLLRTISGLRRP 68

Query: 63  SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP- 121
            +GE++  G               L WL  +DA+K   T+  N+   E L     NSL  
Sbjct: 69  DSGEVIRYG--------------DLAWLGHQDALKPGLTLAQNLALAEKL---GTNSLSD 111

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           ALE + L  L    AR+LS GQ++R   AR++     +WLLDEP+V LD   +  L  ++
Sbjct: 112 ALEALDLTHLTDLPARLLSSGQKRRAAFARVMLSGALLWLLDEPTVGLDVASIERLGAVM 171

Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNLRLP 210
           A HR KGG +IV TH+P+ +++  +  LP
Sbjct: 172 AAHRAKGGAMIVTTHVPLPLDNTRSHELP 200

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q32I01|CCMA_SHIDS Cytochrome c biogenesis ATP-binding export protein CcmA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ccmA PE=3 SV=2

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 111/194 (57%), Gaps = 3/194 (1%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L ++ + C R+ + +   ++ +++ G  + +TG+NG+GK+  LR+L G S+P AGE+LW 
Sbjct: 4   LEVRELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTMLLRLLTGLSRPDAGEVLWQ 63

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
           G  + Q  +   Y   L W+  +  +K + T L+N+ ++   +G     L AL   GL  
Sbjct: 64  GQPLHQ--VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAG 120

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
                   LS GQ++R+ LARL      +W+LDEP  A+D +GV  L   +A+H ++GGI
Sbjct: 121 FEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGI 180

Query: 191 VIVATHLPIQIEDA 204
           VI+ TH P+ + ++
Sbjct: 181 VILTTHQPLNVAES 194

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Shigella dysenteriae serotype 1 (strain Sd197) (taxid: 300267)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q1MAL7|CCMA_RHIL3 Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ccmA PE=3 SV=1

 Score =  125 bits (314), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/188 (38%), Positives = 111/188 (59%), Gaps = 10/188 (5%)

Query: 29  VNISIH--DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86
           VNIS H   G ALVLTG NGSGKST LR++AG  +P  G +++  HD    G  H  ++ 
Sbjct: 19  VNISFHLAAGEALVLTGKNGSGKSTLLRVVAGLLRPEKGTVIF--HDEESPGGRHAGEVS 76

Query: 87  LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEKARMLSM 141
            ++L  ++A+K + TV +N+ ++    G  G++       A + +GL  +       LS 
Sbjct: 77  -HYLGHRNAMKNELTVAENLDFWRAFLGNTGSAAALSVEDATDAVGLSGITHLPFGYLSA 135

Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201
           GQ++R+  A+LL   RP+W+LDEP+ ALD    RL   +I  H +KGGIV+ ATH P+ +
Sbjct: 136 GQQRRIAFAKLLVAHRPVWILDEPTAALDASADRLFADLIEAHLEKGGIVLAATHQPLGL 195

Query: 202 EDAMNLRL 209
            ++  L++
Sbjct: 196 RNSQELKM 203

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Rhizobium leguminosarum bv. viciae (strain 3841) (taxid: 216596)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

>sp|Q92L55|CCMA_RHIME Cytochrome c biogenesis ATP-binding export protein CcmA OS=Rhizobium meliloti (strain 1021) GN=ccmA PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 116/206 (56%), Gaps = 11/206 (5%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-L 68
           RL+ + +S  R    I   ++ ++  G ALV+TG NG+GKST LR+LAG  +P  G + L
Sbjct: 2   RLMAEGLSARRGEDLIFNDISFALAAGEALVVTGPNGAGKSTLLRVLAGLLEPEGGRVRL 61

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNS----LPAL 123
            +G     SG  H  +L  ++L  ++A+K + TV +N+  W   L    G S    + A 
Sbjct: 62  EDG----PSGFEHPRELS-HYLGHRNAMKRELTVEENLTFWQRFLGDSPGGSGIGLVEAA 116

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
           E +GL  +       LS GQ++R+ +A+L+   RPIWLLDEP+ ALD    RL   ++A 
Sbjct: 117 EAVGLADIIHLPFGYLSAGQQRRMAMAKLIVAFRPIWLLDEPTAALDLSADRLFAGLVAA 176

Query: 184 HRKKGGIVIVATHLPIQIEDAMNLRL 209
           H  +GGIV+ ATH P+    A +L +
Sbjct: 177 HLDRGGIVVAATHQPLGFAGAKSLEM 202

Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 4

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
188509941	251	putative ABC transporter [Gossypium raim	1.0	0.912	0.921	1e-121
255565015	229	abc transporter, putative [Ricinus commu	1.0	1.0	0.908	1e-119
224142413	229	ABC transporter family protein [Populus	1.0	1.0	0.908	1e-119
188509956	229	putative ABC transporter [Gossypioides k	1.0	1.0	0.890	1e-116
297837067	229	ATNAP10 [Arabidopsis lyrata subsp. lyrat	1.0	1.0	0.886	1e-116
15221728	229	ABC transporter I family member 1 [Arabi	1.0	1.0	0.886	1e-116
297837047	229	ATNAP10 [Arabidopsis lyrata subsp. lyrat	1.0	1.0	0.882	1e-116
449463240	229	PREDICTED: ABC transporter I family memb	1.0	1.0	0.855	1e-113
75214616	231	ABC transporter family protein [Olimarab	1.0	0.991	0.865	1e-113
357480159	229	ABC transporter family protein [Medicago	1.0	1.0	0.812	1e-105

>gi|188509941|gb|ACD56627.1| putative ABC transporter [Gossypium raimondii]

 Score =  438 bits (1126), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/229 (92%), Positives = 224/229 (97%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M +RKPPLPR+LL +VSCMRNAQQILRHVN+S+HDGGALVLTG+NGSGK+TFLRMLAGFS
Sbjct: 23  MPVRKPPLPRILLNDVSCMRNAQQILRHVNVSVHDGGALVLTGSNGSGKTTFLRMLAGFS 82

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           +PSAG+ILWNGHDI+QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK G SL
Sbjct: 83  RPSAGQILWNGHDISQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKHGKSL 142

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PALELMGLGRLAK+KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 143 PALELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDNEGVRLLEYI 202

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADI+
Sbjct: 203 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIA 251

Source: Gossypium raimondii

Species: Gossypium raimondii

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565015|ref|XP_002523500.1| abc transporter, putative [Ricinus communis] gi|223537207|gb|EEF38839.1| abc transporter, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/229 (90%), Positives = 223/229 (97%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M+LRKPPLP +LL NVSCMRNAQQILRHVN+SIHDGGALVLTG+NGSGK+TFLRMLAGFS
Sbjct: 1   MSLRKPPLPCMLLDNVSCMRNAQQILRHVNVSIHDGGALVLTGSNGSGKTTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAG+ILWNGHD+T+SG+FHQYKLQLNWLSLKDA+KEKFTVLDNVQWFE+LEGKQGNS+
Sbjct: 61  KPSAGQILWNGHDVTESGVFHQYKLQLNWLSLKDAIKEKFTVLDNVQWFEILEGKQGNSM 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
            ALELMGLGRLAK+KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 RALELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIV VATHLPI+IEDAM LRLPPRFPRRMTLVDMLDRADIS
Sbjct: 181 IAEHRKKGGIVFVATHLPIEIEDAMYLRLPPRFPRRMTLVDMLDRADIS 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142413|ref|XP_002324552.1| ABC transporter family protein [Populus trichocarpa] gi|222865986|gb|EEF03117.1| ABC transporter family protein [Populus trichocarpa]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/229 (90%), Positives = 222/229 (96%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M LRK PLPR+LL NVSCMRNAQQILRHVN+S+HDGGALVLTG+NGSGKSTFLRMLAGFS
Sbjct: 1   MLLRKAPLPRILLDNVSCMRNAQQILRHVNVSVHDGGALVLTGSNGSGKSTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAG+ILWNGHD+T+SG+FHQYKLQLNWLSLKDA+KEKFTVLDNVQWFE+LEGKQGNSL
Sbjct: 61  KPSAGQILWNGHDVTESGVFHQYKLQLNWLSLKDAIKEKFTVLDNVQWFELLEGKQGNSL 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PA+ELMGLGRLAK+KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD DGVRLLEYI
Sbjct: 121 PAIELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IA+HRKKGGIV VATHLPI IEDAM LRLPPRFPRRMTLVDMLDRA+IS
Sbjct: 181 IAKHRKKGGIVFVATHLPINIEDAMYLRLPPRFPRRMTLVDMLDRAEIS 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188509956|gb|ACD56640.1| putative ABC transporter [Gossypioides kirkii]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/229 (89%), Positives = 221/229 (96%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M +RKPPLPR+LL +VSCMRNAQQILRHVN+S+HDGGALVLTG+N SGK+TFLRMLAGFS
Sbjct: 1   MPVRKPPLPRILLNDVSCMRNAQQILRHVNVSVHDGGALVLTGSNVSGKTTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           +PS+G+ILW+GHDI+QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK G SL
Sbjct: 61  RPSSGQILWSGHDISQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKHGKSL 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PALELMGLGRLAK+KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLL+YI
Sbjct: 121 PALELMGLGRLAKDKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDNEGVRLLKYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAE+RKK GIVIVATHLPIQIEDAMNL LPPRFPRRMTLVDMLDRADI+
Sbjct: 181 IAEYRKKSGIVIVATHLPIQIEDAMNLSLPPRFPRRMTLVDMLDRADIA 229

Source: Gossypioides kirkii

Species: Gossypioides kirkii

Genus: Gossypioides

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837067|ref|XP_002886415.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata] gi|297332256|gb|EFH62674.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/229 (88%), Positives = 220/229 (96%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M++R+P +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAGEILWNGHDITQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G + 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PALELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIVIVATHLPI+IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIEIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221728|ref|NP_176516.1| ABC transporter I family member 1 [Arabidopsis thaliana] gi|47605542|sp|Q9C8T1.1|AB1I_ARATH RecName: Full=ABC transporter I family member 1; Short=ABC transporter ABCI.1; Short=AtABCI1; AltName: Full=Cytochrome c biogenesis ATP-binding export protein ccmA-like; AltName: Full=MRP-related protein 3; AltName: Full=Putative non-intrinsic ABC protein 10 gi|12324363|gb|AAG52155.1|AC022355_16 hypothetical protein; 38474-39163 [Arabidopsis thaliana] gi|332195959|gb|AEE34080.1| ABC transporter I family member 1 [Arabidopsis thaliana]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/229 (88%), Positives = 219/229 (95%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M++R+P +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAGEILWNGHDITQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G + 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PALELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 PALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIVIVATHLPI IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297837047|ref|XP_002886405.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata] gi|297837061|ref|XP_002886412.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata] gi|297332246|gb|EFH62664.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata] gi|297332253|gb|EFH62671.1| ATNAP10 [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1083), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 202/229 (88%), Positives = 219/229 (95%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M++R+P +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFS
Sbjct: 1   MSIRRPQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           KPSAGEILWNGHDITQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G + 
Sbjct: 61  KPSAGEILWNGHDITQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQ 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           P LELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLEYI
Sbjct: 121 PTLELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRKKGGIVIVATHLPI+IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 IAEHRKKGGIVIVATHLPIEIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463240|ref|XP_004149342.1| PREDICTED: ABC transporter I family member 1-like [Cucumis sativus] gi|449503199|ref|XP_004161883.1| PREDICTED: ABC transporter I family member 1-like [Cucumis sativus]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/229 (85%), Positives = 217/229 (94%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M+LRKPP PRLLL  VSCMRNAQQILR+VN+SIHDG ALVL+G+NGSGK+TFLRMLAGFS
Sbjct: 1   MSLRKPPPPRLLLDQVSCMRNAQQILRNVNVSIHDGSALVLSGSNGSGKTTFLRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           +PSAG ILWNGHDIT+SG+FHQYKLQLNWLSLKDA+KE FT++DNVQWFE+LEGK G S+
Sbjct: 61  RPSAGRILWNGHDITESGVFHQYKLQLNWLSLKDAIKENFTIIDNVQWFELLEGKHGKSM 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           PA+ELMGLGRLAKEKA+MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD DGV+LLEYI
Sbjct: 121 PAIELMGLGRLAKEKAKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDDGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHR+KGGIVIVATH+PI IED+M LRLPPRFPRR+TLVDMLDR DIS
Sbjct: 181 IAEHRRKGGIVIVATHIPIDIEDSMILRLPPRFPRRITLVDMLDRCDIS 229

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75214616|gb|ABA18088.1| ABC transporter family protein [Olimarabidopsis pumila]

 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 200/231 (86%), Positives = 218/231 (94%), Gaps = 2/231 (0%)

Query: 1   MTLRK--PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG 58
           M++R+    +PRLLL+NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAG
Sbjct: 1   MSIRRLQTQIPRLLLQNVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAG 60

Query: 59  FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN 118
           FSKPSAGEILWNGHDIT+SGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G 
Sbjct: 61  FSKPSAGEILWNGHDITKSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGK 120

Query: 119 SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
           + PALELMGLGRL KEK+RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GVRLLE
Sbjct: 121 AQPALELMGLGRLVKEKSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLE 180

Query: 179 YIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           +IIAEHRKKGGIVIVATHLPI IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct: 181 FIIAEHRKKGGIVIVATHLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 231

Source: Olimarabidopsis pumila

Species: Olimarabidopsis pumila

Genus: Olimarabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480159|ref|XP_003610365.1| ABC transporter family protein [Medicago truncatula] gi|355511420|gb|AES92562.1| ABC transporter family protein [Medicago truncatula]

 Score =  385 bits (988), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/229 (81%), Positives = 209/229 (91%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           M++RKPP PRLLL NVSCMRNA Q+L +VN+S+HDGGALVLTG NGSGKSTF+RMLAGFS
Sbjct: 1   MSIRKPPPPRLLLNNVSCMRNASQVLSNVNVSLHDGGALVLTGANGSGKSTFMRMLAGFS 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           +PSAGEILWNGHDI +S IFHQYKLQLNW+ LK  + EK TVLDNV+ FE+L+ K+G + 
Sbjct: 61  RPSAGEILWNGHDIQKSTIFHQYKLQLNWVCLKHGINEKSTVLDNVELFELLDYKRGKAK 120

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
            AL+LMGLGRLAKEK +MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD +GV+LLEYI
Sbjct: 121 LALQLMGLGRLAKEKPKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYI 180

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
           IAEHRK+GGIVIVATHLPI+IEDAM LRLPPRFPRRMTL+DMLDRADIS
Sbjct: 181 IAEHRKQGGIVIVATHLPIEIEDAMLLRLPPRFPRRMTLIDMLDRADIS 229

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2038478	229	ABCI1 "ATP-binding cassette I1	0.938	0.938	0.851	2e-95
UNIPROTKB|P33931	207	ccmA "protoheme IX ABC transpo	0.825	0.913	0.312	1.8e-25
UNIPROTKB|Q9KQE3	207	ccmA "Cytochrome c biogenesis	0.786	0.869	0.308	1.3e-20
TIGR_CMR|VC_2057	207	VC_2057 "heme exporter protein	0.786	0.869	0.308	1.3e-20
TIGR_CMR|CPS_1034	219	CPS_1034 "heme exporter protei	0.882	0.922	0.317	3.5e-20
TIGR_CMR|SPO_2317	204	SPO_2317 "heme exporter protei	0.834	0.936	0.331	1.2e-19
UNIPROTKB|Q0BWF7	193	ccmA "Cytochrome c biogenesis	0.729	0.865	0.309	3.1e-19
TIGR_CMR|SO_0263	216	SO_0263 "heme exporter protein	0.921	0.976	0.290	1.7e-18
TIGR_CMR|APH_0125	206	APH_0125 "heme exporter protei	0.781	0.868	0.291	7.5e-18
TIGR_CMR|ECH_0295	217	ECH_0295 "putative heme export	0.799	0.843	0.278	7.7e-16

TAIR|locus:2038478 ABCI1 "ATP-binding cassette I1" [Arabidopsis thaliana (taxid:3702)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 183/215 (85%), Positives = 194/215 (90%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             NVSCMRNAQQILRHVN+S+HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI
Sbjct:    15 NVSCMRNAQQILRHVNVSLHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE 134
             TQSGIF QYKLQLNW+SLKDA+KE+FTVLDNVQWFE+LE K G + PALELMGLGRL KE
Sbjct:    75 TQSGIFQQYKLQLNWISLKDAIKERFTVLDNVQWFELLENKIGKAQPALELMGLGRLVKE 134

Query:   135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
             K+RMLSMG            IDRPIWLLDEPSVALD +GVRLLEYIIAEHRKKGGIVIVA
Sbjct:   135 KSRMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVRLLEYIIAEHRKKGGIVIVA 194

Query:   195 THLPIQIEDAMNLRLPPRFPRRMTLVDMLDRADIS 229
             THLPI IEDAM LRLPPRFPR+MTL+DMLDRADIS
Sbjct:   195 THLPIDIEDAMILRLPPRFPRKMTLIDMLDRADIS 229

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006810 "transport" evidence=ISS

UNIPROTKB|P33931 ccmA "protoheme IX ABC transporter - ATP binding subunit" [Escherichia coli K-12 (taxid:83333)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/192 (31%), Positives = 101/192 (52%)

Query:    18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
             C R+ + +   ++ +++ G  + +TG+NG+GK+T LR+L G S+P AGE+LW G  + Q 
Sbjct:    11 CERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLLRLLTGLSRPDAGEVLWQGQPLHQ- 69

Query:    78 GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
              +   Y   L W+  +  +K + T L+N+ ++   +G     L AL   GL         
Sbjct:    70 -VRDSYHQNLLWIGHQPGIKTRLTALENLHFYH-RDGDTAQCLEALAQAGLAGFEDIPVN 127

Query:   138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
              LS G                +W+LDEP  A+D +GV  L   +A+H ++GGIVI+ TH 
Sbjct:   128 QLSAGQQRRVALARLWLTRATLWILDEPFTAIDVNGVDRLTQRMAQHTEQGGIVILTTHQ 187

Query:   198 PIQIEDAMNLRL 209
             P+ + ++   R+
Sbjct:   188 PLNVAESKIRRI 199

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=IMP

GO:0015886 "heme transport" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0015439 "heme-transporting ATPase activity" evidence=IEA

GO:0017004 "cytochrome complex assembly" evidence=IEA

UNIPROTKB|Q9KQE3 ccmA "Cytochrome c biogenesis ATP-binding export protein CcmA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 57/185 (30%), Positives = 94/185 (50%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             N++ +R+ + +   ++  IH G  + + G NG+GK+T LR++AG  +   GEILW    I
Sbjct:     6 NLTAIRDERILFESLSFEIHAGELVQIEGRNGTGKTTLLRIIAGLGECECGEILWQRSKI 65

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---LPALELMGLGRL 131
              QS     Y   L +L  +  +K + T L+N++++  +  +  +      AL  +GL   
Sbjct:    66 -QSDR-ESYHQDLLFLGHQTGIKRELTALENLRFYLAVHQQTVDDPAIFEALAKVGLAGR 123

Query:   132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
                    LS G              +P+W+LDEP  A+D  GV +LE +   H ++GGIV
Sbjct:   124 EDVPVAQLSAGQQRRVALARLWLSKKPLWILDEPLTAIDKQGVSVLEALFLSHAQQGGIV 183

Query:   192 IVATH 196
             I+ TH
Sbjct:   184 ILTTH 188

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

TIGR_CMR|VC_2057 VC_2057 "heme exporter protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 57/185 (30%), Positives = 94/185 (50%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             N++ +R+ + +   ++  IH G  + + G NG+GK+T LR++AG  +   GEILW    I
Sbjct:     6 NLTAIRDERILFESLSFEIHAGELVQIEGRNGTGKTTLLRIIAGLGECECGEILWQRSKI 65

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---LPALELMGLGRL 131
              QS     Y   L +L  +  +K + T L+N++++  +  +  +      AL  +GL   
Sbjct:    66 -QSDR-ESYHQDLLFLGHQTGIKRELTALENLRFYLAVHQQTVDDPAIFEALAKVGLAGR 123

Query:   132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
                    LS G              +P+W+LDEP  A+D  GV +LE +   H ++GGIV
Sbjct:   124 EDVPVAQLSAGQQRRVALARLWLSKKPLWILDEPLTAIDKQGVSVLEALFLSHAQQGGIV 183

Query:   192 IVATH 196
             I+ TH
Sbjct:   184 ILTTH 188

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

TIGR_CMR|CPS_1034 CPS_1034 "heme exporter protein CcmA" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 68/214 (31%), Positives = 109/214 (50%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             N++C+R  + +   +++ I+ G  + + G NGSGK++ LR+L+G S+P  G+IL+    I
Sbjct:    14 NLTCIREERLLFDELSLQINAGDIVQVEGPNGSGKTSLLRILSGLSQPYDGQILYREQLI 73

Query:    75 TQSGI-FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLA 132
             +     FHQ  L    LS    VK + T  +N+ +   L G K   SL  L  + L    
Sbjct:    74 SHCREEFHQNLLYFGHLS---GVKGEMTAEENLDFNLALHGNKTQESLSYLAKVNLSGFE 130

Query:   133 KEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
             +  A  LS G             + PIW+LDEP  A+D  GV  LE + + H ++GG VI
Sbjct:   131 ECLASHLSAGQHRRIALARLYQSNVPIWILDEPFTAIDKQGVASLERLFSLHAERGGCVI 190

Query:   193 VATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDRA 226
             + TH     +D ++++  P   +++TL    D A
Sbjct:   191 LTTH-----QDLISIK--PEQIKKITLDYSYDSA 217

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

TIGR_CMR|SPO_2317 SPO_2317 "heme exporter protein CcmA" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 69/208 (33%), Positives = 99/208 (47%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             +++  R    +L  ++ ++  G AL+L G NG+GK+T LR LAG   P AG I      I
Sbjct:     7 DLAIARGGIPVLEGLSFTLTPGRALILRGPNGAGKTTLLRTLAGLQPPLAGRIEGAEDKI 66

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLGRLAK 133
               +G  H            D +K   +V +N+  W  V  G+  +  PALE   LG LA 
Sbjct:    67 AYAG--HS-----------DGLKPTLSVTENLLFWAAVFGGR--DITPALEGFALGDLAD 111

Query:   134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193
               A  LS G              RPIW+LDEP+V+LD D V +    +  H  +GG  ++
Sbjct:   112 RHAGNLSAGQKRRLGLARLLVTGRPIWMLDEPTVSLDRDAVAMFADTVRAHLGQGGSALI 171

Query:   194 ATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
             ATH+ + + DA  L + P   R   L D
Sbjct:   172 ATHIDLGL-DAEVLDVGPYRARPAPLDD 198

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

UNIPROTKB|Q0BWF7 ccmA "Cytochrome c biogenesis ATP-binding export protein CcmA" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 56/181 (30%), Positives = 89/181 (49%)

Query:    16 VSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75
             ++ +R  + + R + +++  G A+VL G NG+GK+T LRMLAG ++P AGEI        
Sbjct:    14 LAILRGERVLFRGIGLTLQPGEAIVLRGANGAGKTTLLRMLAGLTRPEAGEI-------A 66

Query:    76 QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK 135
             +    H       W+  K+ +K + T   ++  +    G   +    L+ + L R A   
Sbjct:    67 RPAAHH-------WIGHKEGIKPQETPRIHLALWAKAWGSSASIADILDQLALTRAADVP 119

Query:   136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVAT 195
              R LS G              RP+WLLDEP  ALD  G  +L+ +I+ H + GG +I + 
Sbjct:   120 GRYLSAGQRRRTAFARLLLEARPLWLLDEPYTALDAAGKTMLDQVISGHLRTGGAIIASM 179

Query:   196 H 196
             H
Sbjct:   180 H 180

GO:0015439 "heme-transporting ATPase activity" evidence=ISS

TIGR_CMR|SO_0263 SO_0263 "heme exporter protein CcmA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 63/217 (29%), Positives = 99/217 (45%)

Query:     1 MTXXXXXXXXXXXXNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
             MT             ++C+R  + +   ++  I+ G  + + G NG+GK++ LR+LAG S
Sbjct:     1 MTNIISVDTLLSASKLTCIREERILFDELSFEINAGDIVQIEGPNGAGKTSLLRILAGLS 60

Query:    61 KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
             +P AG+  +   DI +     +Y   L +L     VK + T  +N+ +   + G      
Sbjct:    61 RPYAGQTFYVNEDINRCR--DEYNEDLLYLGHLAGVKSELTAEENLNFNLRISGYDDFDT 118

Query:   121 PA-LELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEY 179
              A L  + L    +  A  LS G             D  IW+LDEP  A+D  GV  LE 
Sbjct:   119 SAILAKVNLSGFEEALAGHLSAGQHRRTALARLWHNDCKIWILDEPFTAIDKRGVEELEQ 178

Query:   180 IIAEHRKKGGIVIVATHLPIQI--EDAMN-LRLPPRF 213
             +  +H   GG VI+ TH  + I  +D +  +RL  RF
Sbjct:   179 LFIKHADNGGCVILTTHQDMGIIKDDRLRKIRLDYRF 215

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

TIGR_CMR|APH_0125 APH_0125 "heme exporter protein CcmA" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 53/182 (29%), Positives = 87/182 (47%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             NV+C+R  + + R+++   + G   V+ G NGSGK++ LR + G      G+I  NG  I
Sbjct:     6 NVTCVRGERVLFRNLSFIANQGSITVIAGKNGSGKTSLLRSMVGLVPVRFGKITLNGEAI 65

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE 134
             T S         + ++  K+A  E   V+D ++++    G     L A+    L R+   
Sbjct:    66 TISSTCIS---DITYIGHKNACHEHLMVVDILEFWANTRGNDNLILAAVNFFELHRVLHT 122

Query:   135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
             K R LS G             +  +W+LDEP   LD   V +L+ +I    ++GG +I+A
Sbjct:   123 KFRHLSSGWKRKVALSRLLIFNTHVWMLDEPFANLDSASVAMLKELILTRAERGGTIILA 182

Query:   195 TH 196
              H
Sbjct:   183 DH 184

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

TIGR_CMR|ECH_0295 ECH_0295 "putative heme exporter protein CcmA" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 52/187 (27%), Positives = 89/187 (47%)

Query:    15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
             +++C+RN + +   +N S       ++ G NGSGK++ LR+ AG    + G I +NG +I
Sbjct:     6 DLACIRNNRYLFSQLNFSTQQNLLTLVIGNNGSGKTSLLRLFAGLVPITHGNIKYNGKNI 65

Query:    75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE 134
               S   + Y   L ++  K+   + FTVL+N+Q +  L+         +    L  +   
Sbjct:    66 HDS---NTYFTSLTYIGHKNFCNDNFTVLENIQLWANLKNTHELIAATICFFKLQPILDI 122

Query:   135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKKGGIVIV 193
             K + LS G             +  IW++DEP   LD +   L LE I    ++K  IVI+
Sbjct:   123 KYKDLSSGWKRRVALSRLLIYNTNIWIIDEPFAHLDINTKELILELIFTRLKQKDSIVII 182

Query:   194 ATHLPIQ 200
             + H  ++
Sbjct:   183 SDHSEVK 189

GO:0015232 "heme transporter activity" evidence=ISS

GO:0015886 "heme transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0BV49	CCMA_GRABC	3, ., 6, ., 3, ., 4, 1	0.3333	0.9082	0.8062	yes	no
P52218	CCMA_PARDP	3, ., 6, ., 3, ., 4, 1	0.3613	0.8122	0.8857	yes	no
Q1LFZ8	CCMA2_RALME	3, ., 6, ., 3, ., 4, 1	0.3282	0.8296	0.9004	yes	no
Q2YNU0	CCMA_BRUA2	3, ., 6, ., 3, ., 4, 1	0.3233	0.8253	0.8790	yes	no
Q6NDA6	CCMA_RHOPA	3, ., 6, ., 3, ., 4, 1	0.3730	0.8165	0.935	yes	no
Q2VZJ1	CCMA_MAGSA	3, ., 6, ., 3, ., 4, 1	0.4129	0.8471	0.8940	yes	no
Q48GL0	CCMA_PSE14	3, ., 6, ., 3, ., 4, 1	0.3471	0.8253	0.8873	yes	no
Q8G358	CCMA_BRUSU	3, ., 6, ., 3, ., 4, 1	0.3233	0.8253	0.8790	yes	no
Q0BWF7	CCMA_HYPNA	3, ., 6, ., 3, ., 4, 1	0.3398	0.8122	0.9637	yes	no
Q4QLJ9	CCMA_HAEI8	3, ., 6, ., 3, ., 4, 1	0.3367	0.8209	0.8867	yes	no
Q3Z006	CCMA_SHISS	3, ., 6, ., 3, ., 4, 1	0.3475	0.8034	0.8888	yes	no
Q6D606	CCMA_ERWCT	3, ., 6, ., 3, ., 4, 1	0.3368	0.8034	0.8932	yes	no
Q32I01	CCMA_SHIDS	3, ., 6, ., 3, ., 4, 1	0.3350	0.8340	0.9227	yes	no
Q5LR15	CCMA_RUEPO	3, ., 6, ., 3, ., 4, 1	0.3537	0.8515	0.9558	yes	no
Q92L55	CCMA_RHIME	3, ., 6, ., 3, ., 4, 1	0.3737	0.8515	0.9420	yes	no
Q0TFP1	CCMA_ECOL5	3, ., 6, ., 3, ., 4, 1	0.3475	0.8034	0.8888	yes	no
Q31Z24	CCMA_SHIBS	3, ., 6, ., 3, ., 4, 1	0.3475	0.8034	0.8888	yes	no
Q21QL9	CCMA_RHOFD	3, ., 6, ., 3, ., 4, 1	0.3197	0.8384	0.9142	yes	no
Q28NZ8	CCMA_JANSC	3, ., 6, ., 3, ., 4, 1	0.3364	0.8602	0.9336	yes	no
Q11CZ6	CCMA_MESSB	3, ., 6, ., 3, ., 4, 1	0.3383	0.8558	0.9702	yes	no
Q57FS7	CCMA_BRUAB	3, ., 6, ., 3, ., 4, 1	0.3233	0.8253	0.8790	yes	no
Q2J3F7	CCMA_RHOP2	3, ., 6, ., 3, ., 4, 1	0.3523	0.8165	0.935	yes	no
Q166I9	CCMA_ROSDO	3, ., 6, ., 3, ., 4, 1	0.3517	0.8078	0.8980	yes	no
P45032	CCMA_HAEIN	3, ., 6, ., 3, ., 4, 1	0.3505	0.8165	0.8820	yes	no
Q0A808	CCMA_ALHEH	3, ., 6, ., 3, ., 4, 1	0.3604	0.8340	0.8093	yes	no
Q52733	CCMA_RHIET	3, ., 6, ., 3, ., 4, 1	0.3446	0.8558	0.9116	yes	no
Q2K396	CCMA_RHIEC	3, ., 6, ., 3, ., 4, 1	0.3446	0.8558	0.9116	yes	no
Q1R9L8	CCMA_ECOUT	3, ., 6, ., 3, ., 4, 1	0.3475	0.8034	0.8888	yes	no
Q98EA4	CCMA_RHILO	3, ., 6, ., 3, ., 4, 1	0.3553	0.8296	0.9452	yes	no
Q82WC8	CCMA_NITEU	3, ., 6, ., 3, ., 4, 1	0.3618	0.8471	0.9107	yes	no
O33570	CCMA_RHOS4	3, ., 6, ., 3, ., 4, 1	0.3482	0.8165	0.8904	yes	no
Q5E3S7	CCMA_VIBF1	3, ., 6, ., 3, ., 4, 1	0.3298	0.8296	0.9313	yes	no
Q2NSG3	CCMA_SODGM	3, ., 6, ., 3, ., 4, 1	0.3246	0.8165	0.8862	yes	no
Q3SVV2	CCMA_NITWN	3, ., 6, ., 3, ., 4, 1	0.3731	0.8471	0.97	yes	no
Q5FQN4	CCMA_GLUOX	3, ., 6, ., 3, ., 4, 1	0.3732	0.8253	0.8957	yes	no
Q83KD5	CCMA_SHIFL	3, ., 6, ., 3, ., 4, 1	0.3475	0.8034	0.8888	yes	no
Q2Y9Q1	CCMA_NITMU	3, ., 6, ., 3, ., 4, 1	0.3609	0.8733	0.9708	yes	no
Q8YEM5	CCMA_BRUME	3, ., 6, ., 3, ., 4, 1	0.3233	0.8253	0.8790	yes	no
Q8UC12	CCMA_AGRT5	3, ., 6, ., 3, ., 4, 1	0.3509	0.8384	0.9014	yes	no
Q5NQX0	CCMA_ZYMMO	3, ., 6, ., 3, ., 4, 1	0.3422	0.8995	0.9321	yes	no
Q478L3	CCMA_DECAR	3, ., 6, ., 3, ., 4, 1	0.3684	0.8078	0.9068	yes	no
Q4ZQZ7	CCMA_PSEU2	3, ., 6, ., 3, ., 4, 1	0.3333	0.8253	0.8790	yes	no
Q9C8T1	AB1I_ARATH	3, ., 6, ., 3, ., 4, 1	0.8864	1.0	1.0	yes	no
Q487I2	CCMA_COLP3	3, ., 6, ., 3, ., 4, 1	0.3377	0.9301	0.9726	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3.41	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	6e-64
COG4133	209	COG4133, CcmA, ABC-type transport system involved	3e-56
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-54
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	9e-46
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	2e-44
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	9e-37
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	2e-35
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	9e-34
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-32
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-32
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-30
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	2e-30
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	3e-30
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	1e-29
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	2e-29
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	4e-29
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	1e-28
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	2e-28
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-28
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	3e-28
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	6e-27
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	7e-27
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	9e-27
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	1e-26
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	3e-26
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-26
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	5e-26
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	1e-25
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-24
COG4988	559	COG4988, CydD, ABC-type transport system involved	1e-24
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	1e-24
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	2e-24
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	3e-24
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	5e-24
PRK13541	195	PRK13541, PRK13541, cytochrome c biogenesis protei	8e-24
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	1e-23
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-23
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	2e-23
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	2e-23
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	2e-23
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	4e-23
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	4e-23
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	5e-23
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	9e-23
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	9e-23
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	1e-22
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-22
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-22
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	4e-22
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	4e-22
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	2e-21
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-21
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	2e-21
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	3e-21
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	4e-21
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	4e-21
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	6e-21
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	1e-20
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	1e-20
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	2e-20
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-20
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	2e-20
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-20
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	4e-20
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	4e-20
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	5e-20
pfam00005	119	pfam00005, ABC_tran, ABC transporter	5e-20
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	7e-20
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	9e-20
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	1e-19
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	1e-19
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	1e-19
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-19
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	2e-19
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-19
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	3e-19
COG4615	546	COG4615, PvdE, ABC-type siderophore export system,	3e-19
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	7e-19
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	7e-19
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	9e-19
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-18
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	2e-18
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-18
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	2e-18
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-18
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	3e-18
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	3e-18
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	4e-18
COG4987	573	COG4987, CydC, ABC-type transport system involved	4e-18
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	6e-18
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	7e-18
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	7e-18
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	7e-18
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	7e-18
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	9e-18
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	1e-17
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-17
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-17
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	4e-17
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	4e-17
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	4e-17
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	7e-17
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	1e-16
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	1e-16
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-16
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	2e-16
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	3e-16
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	3e-16
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-16
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	4e-16
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	4e-16
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	7e-16
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	1e-15
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	1e-15
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	1e-15
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	1e-15
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-15
PRK10522	547	PRK10522, PRK10522, multidrug transporter membrane	3e-15
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	3e-15
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	3e-15
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	3e-15
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	5e-15
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	5e-15
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-15
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	6e-15
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	6e-15
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	1e-14
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	1e-14
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	1e-14
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	2e-14
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-14
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	2e-14
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	2e-14
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	2e-14
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	2e-14
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	3e-14
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	3e-14
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	4e-14
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-14
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	4e-14
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	5e-14
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	5e-14
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	8e-14
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	9e-14
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	1e-13
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-13
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	1e-13
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	1e-13
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-13
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	2e-13
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	2e-13
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	2e-13
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-13
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	3e-13
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	4e-13
COG4598	256	COG4598, HisP, ABC-type histidine transport system	4e-13
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	4e-13
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	4e-13
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	5e-13
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	5e-13
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	5e-13
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	5e-13
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	5e-13
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	5e-13
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	7e-13
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	7e-13
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	7e-13
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	8e-13
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	8e-13
COG1123	539	COG1123, COG1123, ATPase components of various ABC	9e-13
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	9e-13
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	9e-13
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	1e-12
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-12
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	1e-12
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	1e-12
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	2e-12
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	2e-12
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	2e-12
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	2e-12
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	2e-12
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	3e-12
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	3e-12
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	3e-12
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	3e-12
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	4e-12
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	4e-12
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	5e-12
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	5e-12
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	7e-12
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	8e-12
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	9e-12
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	9e-12
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	1e-11
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	1e-11
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	2e-11
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	2e-11
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-11
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	2e-11
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	2e-11
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-11
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	2e-11
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	3e-11
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	4e-11
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	4e-11
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	4e-11
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	4e-11
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	4e-11
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	5e-11
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	5e-11
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	5e-11
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	5e-11
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	7e-11
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	7e-11
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	7e-11
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	7e-11
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	8e-11
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	8e-11
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	8e-11
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	8e-11
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-10
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	1e-10
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	1e-10
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-10
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	2e-10
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	2e-10
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	2e-10
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	2e-10
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	3e-10
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	3e-10
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	3e-10
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	3e-10
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	3e-10
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	4e-10
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	4e-10
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	4e-10
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	7e-10
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	8e-10
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	9e-10
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	9e-10
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	1e-09
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-09
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	1e-09
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	1e-09
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	1e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	1e-09
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	2e-09
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-09
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	2e-09
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	2e-09
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	2e-09
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-09
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	2e-09
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	3e-09
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	3e-09
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	3e-09
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	4e-09
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	4e-09
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	4e-09
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	4e-09
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	5e-09
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	1e-08
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-08
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-08
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	2e-08
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	2e-08
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-08
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	2e-08
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	3e-08
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	3e-08
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-08
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	4e-08
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	4e-08
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	4e-08
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	5e-08
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	6e-08
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	6e-08
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-08
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	8e-08
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	8e-08
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	9e-08
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-07
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	2e-07
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-07
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-07
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	3e-07
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	3e-07
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	3e-07
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	3e-07
COG5265	497	COG5265, ATM1, ABC-type transport system involved	4e-07
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	4e-07
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	5e-07
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	6e-07
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	7e-07
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	2e-06
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	3e-06
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	3e-06
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	3e-06
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	3e-06
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	3e-06
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	3e-06
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	4e-06
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	4e-06
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	4e-06
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	4e-06
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	5e-06
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	6e-06
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	7e-06
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	8e-06
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	1e-05
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-05
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	1e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	2e-05
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	2e-05
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-05
smart00382	148	smart00382, AAA, ATPases associated with a variety	4e-05
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	4e-05
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	5e-05
cd03239	178	cd03239, ABC_SMC_head, The SMC head domain belongs	6e-05
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	6e-05
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	9e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	1e-04
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	1e-04
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	1e-04
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	1e-04
cd03283	199	cd03283, ABC_MutS-like, ATP-binding cassette domai	2e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	2e-04
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	2e-04
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-04
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-04
TIGR00630	925	TIGR00630, uvra, excinuclease ABC, A subunit	2e-04
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	3e-04
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	3e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	4e-04
cd03243	202	cd03243, ABC_MutS_homologs, ATP-binding cassette d	4e-04
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	4e-04
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	5e-04
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	5e-04
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	5e-04
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	6e-04
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	9e-04
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	0.001
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	0.001
PRK13545	549	PRK13545, tagH, teichoic acids export protein ATP-	0.001
pfam13304	256	pfam13304, AAA_21, AAA domain	0.001
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	0.002
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	0.002
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	0.003
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	0.004

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score =  197 bits (502), Expect = 6e-64
 Identities = 81/208 (38%), Positives = 120/208 (57%), Gaps = 5/208 (2%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L  ++++C+R  + +   ++ ++  G ALVLTG NGSGK+T LR++AG   P+AG I 
Sbjct: 1   MMLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIK 60

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMG 127
            +G DI             ++L  ++A+K   TV +N++ W   L G++ +   ALE +G
Sbjct: 61  LDGGDIDDP----DVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVG 116

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           L  LA      LS GQ++R+ LARLL  +RPIW+LDEP+ ALD   V L   +I  H  +
Sbjct: 117 LAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQ 176

Query: 188 GGIVIVATHLPIQIEDAMNLRLPPRFPR 215
           GGIVI ATH+P+ +  A  L L P    
Sbjct: 177 GGIVIAATHIPLGLPGARELDLGPFAAE 204

Length = 207

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score =  177 bits (452), Expect = 3e-56
 Identities = 76/204 (37%), Positives = 115/204 (56%), Gaps = 6/204 (2%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L  +N+SC R  + +   ++ +++ G AL +TG NG+GK+T LR+LAG  +P AGE+ 
Sbjct: 1   MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60

Query: 69  WNGHDI-TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP--ALEL 125
           W G  I      +HQ    L +L  +  +K + T L+N+ +++   G    +    AL  
Sbjct: 61  WQGEPIQNVRESYHQA---LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQ 117

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +GL  L       LS GQ++R+ LARL     P+W+LDEP  ALD +GV LL  ++A H 
Sbjct: 118 VGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHA 177

Query: 186 KKGGIVIVATHLPIQIEDAMNLRL 209
            +GGIV++ TH P+ I  A   RL
Sbjct: 178 AQGGIVLLTTHQPLPIASAQIRRL 201

Length = 209

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score =  172 bits (438), Expect = 3e-54
 Identities = 72/201 (35%), Positives = 114/201 (56%), Gaps = 5/201 (2%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L  +N++C R  + +   ++ +++ G AL +TG NG GK+T LR+LAG  +P +GE+ WN
Sbjct: 1   LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60

Query: 71  GHDI-TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF-EVLEGKQGNSLPALELMGL 128
           G  +  Q    H+    + +L     +K + + L+N+ ++  +  G Q     AL  +GL
Sbjct: 61  GTALAEQRDEPHR---NILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGL 117

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
                  A  LS GQ++RL LARL     P+W+LDEP+ ALD  GV LL  ++  H  +G
Sbjct: 118 TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARG 177

Query: 189 GIVIVATHLPIQIEDAMNLRL 209
           GIV++ TH  + + +A  LRL
Sbjct: 178 GIVLLTTHQDLGLVEARELRL 198

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score =  150 bits (382), Expect = 9e-46
 Identities = 67/201 (33%), Positives = 117/201 (58%), Gaps = 4/201 (1%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L  +N++C R+ + +   ++ +++ G  + + G NG+GK++ LR+LAG ++P AGE+LW 
Sbjct: 2   LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN--SLPALELMGL 128
           G  I +     +Y   L +L  +  +K + T L+N+++++ L G   +     AL  +GL
Sbjct: 62  GEPIRRQR--DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGL 119

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
                   R LS GQ++R+ LARL     P+W+LDEP  A+D  GV  LE ++A+H ++G
Sbjct: 120 AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQG 179

Query: 189 GIVIVATHLPIQIEDAMNLRL 209
           G+VI+ TH  + +      +L
Sbjct: 180 GMVILTTHQDLPVASDKVRKL 200

Length = 204

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score =  147 bits (372), Expect = 2e-44
 Identities = 68/200 (34%), Positives = 106/200 (53%), Gaps = 5/200 (2%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L    ++C R+ + +   ++ ++  G AL +TG NGSGK+T LR+LAG S P AG +L N
Sbjct: 1   LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLN 60

Query: 71  GH-DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG 129
           G     Q     +    L +L     +K   +VL+N++++      +     AL  +GL 
Sbjct: 61  GGPLDFQRDSIAR---GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQ-VEEALARVGLN 116

Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
                    LS GQ++R+ LARLL   RP+W+LDEP+ ALD  GV      +A H  +GG
Sbjct: 117 GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGG 176

Query: 190 IVIVATHLPIQIEDAMNLRL 209
           +V++ TH  + + +A    L
Sbjct: 177 MVVLTTHQDLGLSEAGAREL 196

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  130 bits (328), Expect = 9e-37
 Identities = 57/200 (28%), Positives = 107/200 (53%), Gaps = 9/200 (4%)

Query: 11  LLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           + ++N++      +  L  V+  +  G    L G NG+GK+T L++LAG  KP++GEIL 
Sbjct: 5   IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LE 124
            G+D+ +     + + ++ ++  + ++  + TV +N+++F  L G             LE
Sbjct: 65  LGYDVVKE--PAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLE 122

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAE 183
           L GL   A +K R LS G ++RL +A  L  D  + +LDEP+  LD +  R + E +   
Sbjct: 123 LFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLREL 182

Query: 184 HRKKGGIVIVATHLPIQIED 203
            ++ G  ++++TH+  + E+
Sbjct: 183 AKEGGVTILLSTHILEEAEE 202

Length = 293

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  124 bits (313), Expect = 2e-35
 Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 36/215 (16%)

Query: 13  LKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           LKN+S      A+  L  ++++I  G  +++ G NGSGKST LR+L G   P++GE+L +
Sbjct: 2   LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN--VQWF------EVLEGKQGNSLP- 121
           G D+T+             LSLK+  ++   V  N   Q+F      EV  G +   LP 
Sbjct: 62  GKDLTK-------------LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPE 108

Query: 122 ---------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
                    ALEL+GL  L       LS GQ++R+ +A +LA+D  I LLDEP+  LD  
Sbjct: 109 EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168

Query: 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
           G R L  ++ + + +G  +I+ TH    ++  + L
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTH---DLDLLLEL 200

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  118 bits (298), Expect = 9e-34
 Identities = 55/192 (28%), Positives = 85/192 (44%), Gaps = 47/192 (24%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++N+S     +  L +V++++  G  + L G NGSGKST LR +AG  KP++GEIL +G 
Sbjct: 2   IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK 61

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
           DI +                         +   + +           +P L         
Sbjct: 62  DIAK--------------------LPLEELRRRIGY-----------VPQL--------- 81

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
                  S GQR+R+ LAR L ++  + LLDEP+  LD      L  ++ E  ++G  VI
Sbjct: 82  -------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134

Query: 193 VATHLPIQIEDA 204
           + TH P   E A
Sbjct: 135 IVTHDPELAELA 146

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score =  116 bits (291), Expect = 3e-32
 Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 8/193 (4%)

Query: 6   PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
           PPL  L    ++  RN + +   ++  +  G AL++ G NG+GK+T LR+LAG     +G
Sbjct: 9   PPL--LAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG 66

Query: 66  EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP--AL 123
           +I  +G   T+          + +L     +K   + L+N+ +   L G++   +P  AL
Sbjct: 67  QIQIDGKTATRG----DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSAL 122

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
            ++GL        R LS GQ+KRL LARL     P+WLLDEP   LD +G+ L+  +I+ 
Sbjct: 123 AIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182

Query: 184 HRKKGGIVIVATH 196
           H + GG  +V TH
Sbjct: 183 HLRGGGAALVTTH 195

Length = 214

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  114 bits (288), Expect = 5e-32
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 33/191 (17%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++N+S     +  L  +++++  G    L G NG+GK+T ++++ G  KP +GEI   G 
Sbjct: 3   VRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
           DI +     + K ++ +L  + ++ E  TV +N++                         
Sbjct: 63  DIKKEP--EEVKRRIGYLPEEPSLYENLTVRENLK------------------------- 95

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
                 LS G ++RL LA+ L  D  + +LDEP+  LD +  R    ++ E +K+G  ++
Sbjct: 96  ------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149

Query: 193 VATHLPIQIED 203
           +++H+  + E 
Sbjct: 150 LSSHILEEAER 160

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  111 bits (280), Expect = 2e-30
 Identities = 69/211 (32%), Positives = 100/211 (47%), Gaps = 28/211 (13%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L LK +S    + + L  +++++  G  L L G +G GK+T LR++AG  +P +GEIL +
Sbjct: 1   LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60

Query: 71  GHDIT-----QSGI---FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QG 117
           G D+T     +  I   F  Y L    L          TV +N+ +   L G      + 
Sbjct: 61  GRDVTGVPPERRNIGMVFQDYAL-FPHL----------TVAENIAFGLKLRGVPKAEIRA 109

Query: 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRL 176
                LEL+GL  L       LS GQ++R+ LAR LA +  + LLDEP  ALD      L
Sbjct: 110 RVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169

Query: 177 LEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
            E +    R+ G   I  TH     E+A+ L
Sbjct: 170 REELKELQRELGITTIYVTH---DQEEALAL 197

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  111 bits (280), Expect = 2e-30
 Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 44/235 (18%)

Query: 11  LLLKNVS----CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
           + LKN+S          Q L+ V++SI  G  + + G +GSGKST L +L G  +P++GE
Sbjct: 1   IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60

Query: 67  ILWNGHDITQSG--------------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL 112
           +  +G DI++                +F  + L      L D      T L+NV+   +L
Sbjct: 61  VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL------LPD-----LTALENVELPLLL 109

Query: 113 EGKQGNSLP-----ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
            G             LE +GLG         LS GQ++R+ +AR LA D  I L DEP+ 
Sbjct: 110 AGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTG 169

Query: 168 ALDYD-GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
            LD + G  ++E +   +++ G  ++V TH         +  L     R + L D
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTH---------DPELAEYADRIIELRD 215

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  109 bits (276), Expect = 3e-30
 Identities = 65/185 (35%), Positives = 95/185 (51%), Gaps = 31/185 (16%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++N+S     + +L  +++SI  G  + + G NG+GKST L+ LAG  KPS+GEIL +G 
Sbjct: 2   VENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
           D+               LS K+  ++   V             Q     ALEL+GL  LA
Sbjct: 62  DLAS-------------LSPKELARKIAYVP------------Q-----ALELLGLAHLA 91

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKKGGIV 191
                 LS G+R+R+ LAR LA + PI LLDEP+  LD    + LLE +    R++G  V
Sbjct: 92  DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151

Query: 192 IVATH 196
           ++  H
Sbjct: 152 VMVLH 156

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  110 bits (276), Expect = 1e-29
 Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 35/220 (15%)

Query: 8   LPRLLLKNVSC-MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
           L  +  +N+S      +  L+ V++ I  G  ++L G NGSGKST L++L G  KP++GE
Sbjct: 1   LRMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN--VQWFE--VLE----GKQGN 118
           +L +G D +               SL +  ++   V  N   Q F   V +    G +  
Sbjct: 61  VLVDGLDTSSE------------KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL 108

Query: 119 SLP----------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
            LP          ALEL+GL  L       LS GQ++R+ +A +LA+   I LLDEP+  
Sbjct: 109 GLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAG 168

Query: 169 LDYDGVRLLEYIIAEHRKKGGI-VIVATHLPIQIEDAMNL 207
           LD  G R L  ++ + +++GG  +I+ TH    +E  +  
Sbjct: 169 LDPKGRRELLELLKKLKEEGGKTIIIVTH---DLELVLEY 205

Length = 235

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  109 bits (275), Expect = 2e-29
 Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 23/203 (11%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P + ++N++     + +L  +++S+  G    L G NG+GKST L+ + G  KPS+GEI 
Sbjct: 3   PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62

Query: 69  WNGHDITQSGIFHQ--Y---KLQLNW---LSLKDAV-------KEKFTVLDNVQWFEVLE 113
             G  + +     +  Y   K  ++    +++KD V       K  F  L+     +V E
Sbjct: 63  IFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDE 122

Query: 114 GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
                   ALE +G+  L   +   LS GQ++R+ LAR LA +  + LLDEP   +D  G
Sbjct: 123 --------ALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174

Query: 174 VRLLEYIIAEHRKKGGIVIVATH 196
            + +  ++ E R++G  V++ TH
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVTH 197

Length = 254

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  109 bits (274), Expect = 4e-29
 Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 37/216 (17%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L ++ VS      ++L  +N+S+  G  + + G +G GKST LR++AG  KP++GE+L
Sbjct: 2   ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61

Query: 69  WNGHDITQSG-----IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGN 118
            +G  +T  G     +F +  L L WL          TVLDNV     L GK     +  
Sbjct: 62  LDGRPVTGPGPDIGYVFQEDAL-LPWL----------TVLDNVALGLELRGKSKAEARER 110

Query: 119 SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-------Y 171
           +   LEL+GL     +    LS G R+R+ +AR LA    + LLDEP  ALD        
Sbjct: 111 AKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170

Query: 172 DGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
           D    L  +  E RK   +++V TH    +++A+ L
Sbjct: 171 D---ELLRLWEETRK--TVLLV-TH---DVDEAVYL 197

Length = 248

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  108 bits (271), Expect = 1e-28
 Identities = 69/205 (33%), Positives = 98/205 (47%), Gaps = 25/205 (12%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L ++N+S     + IL  ++ SI  G    + G NGSGKST L+ LAG  KP +GE+L
Sbjct: 1   MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAV-------KEKFTVLDNV--------QWFEVLE 113
            +G DI          L    L+ K A            TV + V          F    
Sbjct: 61  LDGKDI--------ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPS 112

Query: 114 GK-QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
            + +     ALEL+GL  LA      LS G+R+R+ +AR LA + PI LLDEP+  LD  
Sbjct: 113 KEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIA 172

Query: 173 G-VRLLEYIIAEHRKKGGIVIVATH 196
             + +LE +   +R+KG  V++  H
Sbjct: 173 HQIEVLELLRDLNREKGLTVVMVLH 197

Length = 258

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  106 bits (267), Expect = 2e-28
 Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           +++++       +L  V+  +  G  L + G NG+GKST L+ + G  KP++G I   G 
Sbjct: 2   VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61

Query: 73  DITQSGIFHQY---KLQLNW---LSLKDAV-------KEKFTVLDNVQWFEVLEGKQGNS 119
            + +      Y   +  ++    +S++D V       K  F  L      +V E      
Sbjct: 62  PLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDE------ 115

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
             ALE +GL  LA  +   LS GQ++R+ LAR L  D  + LLDEP   +D      +  
Sbjct: 116 --ALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173

Query: 180 IIAEHRKKGGIVIVATH 196
           ++ E R++G  ++V TH
Sbjct: 174 LLRELRREGMTILVVTH 190

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  106 bits (267), Expect = 3e-28
 Identities = 55/178 (30%), Positives = 100/178 (56%), Gaps = 6/178 (3%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
             ++++  V++S+  G  + L G NG+GK+T   M+ G  KP +G+IL +G DIT+  + 
Sbjct: 11  GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH 70

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNV----QWFEVLEGKQGNSLPA-LELMGLGRLAKEK 135
            + +L + +L  + ++  K TV +N+    +   + + ++   L   LE   +  L K K
Sbjct: 71  KRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK 130

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG-GIVI 192
           A  LS G+R+R+++AR LA +    LLDEP   +D   V+ ++ II   + +G G++I
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLI 188

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 41/219 (18%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           + L+ VN+ I  G  + + G +GSGKST L +L G  KP++GE+L NG D+T+       
Sbjct: 19  EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELA 78

Query: 79  ---------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALE 124
                    +F  + L      L D      TVL+NV+   ++ GK            LE
Sbjct: 79  KLRRKKIGFVFQNFNL------LPD-----LTVLENVELPLLIAGKSAGRRKRAAEELLE 127

Query: 125 LMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIA 182
           ++GL  RL K+K   LS GQ++R+ +AR L  +  I L DEP+  LD      +LE +  
Sbjct: 128 VLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRE 187

Query: 183 EHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
            ++++G  +I+ TH         +  L     R + L D
Sbjct: 188 LNKERGKTIIMVTH---------DPELAKYADRVIELKD 217

Length = 226

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  102 bits (256), Expect = 6e-27
 Identities = 55/178 (30%), Positives = 93/178 (52%), Gaps = 7/178 (3%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           Q +  V+ ++  G    L G NG+GK+T LRMLAG  +P AG    +G D+ +     + 
Sbjct: 19  QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA--EA 76

Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMGLGRLAKEKARM 138
           + +L ++S    + ++ T  +N+++F  L G +G+ L A      + +G+  L   +   
Sbjct: 77  RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGG 136

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            S G R+++ +AR L  D P+ LLDEP+  LD    R L   I + R  G  ++ +TH
Sbjct: 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTH 194

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  105 bits (264), Expect = 7e-27
 Identities = 69/207 (33%), Positives = 97/207 (46%), Gaps = 42/207 (20%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++NVS        +  +++ I  G  + L G +G GK+T LRM+AGF +PS+GEIL +G 
Sbjct: 8   IRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGE 67

Query: 73  DIT-----QSGI---FHQYKLQLNWLSLKDAVKEKF---TVLDNVQWFEVLEGKQGNSLP 121
           DIT     +  I   F  Y L              F   TV +NV  F +   K    L 
Sbjct: 68  DITDVPPEKRPIGMVFQSYAL--------------FPHMTVEENVA-FGL---KVRKKLK 109

Query: 122 ----------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
                     ALEL+GL   A  K   LS GQ++R+ LAR L  +  + LLDEP  ALD 
Sbjct: 110 KAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169

Query: 172 DGVR--LLEYIIAEHRKKGGIVIVATH 196
             +R  + + +    R+ G   +  TH
Sbjct: 170 K-LREQMRKELKELQRELGITFVYVTH 195

Length = 352

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  102 bits (256), Expect = 9e-27
 Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 23/163 (14%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG- 78
             A   L  +++S+ +G  + L G +G GKST LR++AG  +P++GE+L +G  +T  G 
Sbjct: 14  GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGP 73

Query: 79  ----IFHQYKLQLNWLSLKDAVKEKFTVLDNV------QWFEVLEGKQGNSLPALELMGL 128
               +F Q  L L WL          TVLDNV      Q     E  +  +   LEL+GL
Sbjct: 74  DRGYVFQQDAL-LPWL----------TVLDNVALGLELQGVPKAE-ARERAEELLELVGL 121

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
                     LS G R+R+ LAR LA+D  + LLDEP  ALD 
Sbjct: 122 SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  101 bits (253), Expect = 1e-26
 Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 30/186 (16%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL  +++ ++ G  + LTG NG+GK+T  ++LAG  K S+G IL NG             
Sbjct: 15  ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG------------- 61

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQ--------WFEVLEGKQGNSLPA------LELMGLGR 130
                +  K+  K    V+ +V           E+L G +            L+ + L  
Sbjct: 62  ---KPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
           L +     LS GQ++RL +A  L   + + + DEP+  LDY  +  +  +I E   +G  
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178

Query: 191 VIVATH 196
           VIV TH
Sbjct: 179 VIVITH 184

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =   99 bits (250), Expect = 3e-26
 Identities = 65/210 (30%), Positives = 97/210 (46%), Gaps = 56/210 (26%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L LKNVS     + +L  V+++I  G  + L G +GSGKST LR +AG  +P +G IL +
Sbjct: 1   LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60

Query: 71  GHDITQSG------------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN 118
           G D+T               +F  + L    L          TVL+N+            
Sbjct: 61  GEDLTDLEDELPPLRRRIGMVFQDFAL-FPHL----------TVLENI------------ 97

Query: 119 SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
                    LG         LS GQ++R+ LAR LA+D  + LLDEP+ ALD    R + 
Sbjct: 98  --------ALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140

Query: 179 YIIAEHRKKGGI-VIVATHLPIQIEDAMNL 207
            ++   + + GI V++ TH    +++A  L
Sbjct: 141 ALLKSLQAQLGITVVLVTH---DLDEAARL 167

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  101 bits (254), Expect = 5e-26
 Identities = 68/202 (33%), Positives = 102/202 (50%), Gaps = 12/202 (5%)

Query: 6   PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
            P P + ++ V+     + IL  V++ +  G  L + G +GSGKST LR++ G  +P  G
Sbjct: 4   SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG 63

Query: 66  EILWNGHDITQSGIFHQYKLQLNW--LSLKDAVKEKFTVLDNVQWFEVLEGK-------Q 116
           EIL +G DI Q      Y+++     L  + A+    TV +NV  F + E         +
Sbjct: 64  EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVA-FPLREHTKLPESLIR 122

Query: 117 GNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR 175
              L  LEL+GL G  A      LS G RKR+ LAR +A+D  +  LDEP+  LD     
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182

Query: 176 LLEYIIAEHRKKGGI-VIVATH 196
           +++ +I E     G+ VI+ TH
Sbjct: 183 VIDELIRELNDALGLTVIMVTH 204

Length = 263

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  102 bits (257), Expect = 5e-26
 Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 47/212 (22%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            L LKNV     + ++L+ VN+ I DG  +VL G +G GKST LRM+AG  +P++GEIL 
Sbjct: 3   ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62

Query: 70  NGHDITQS-----GI---FHQYKL--------------QLNWLSLKDAVKEKFTVLDNVQ 107
           +G D+T       GI   F  Y L              +L  +  K  + ++        
Sbjct: 63  DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGVP-KAEIDKRV------- 114

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
                           +L+GL  L   K   LS GQR+R+ LAR L     ++LLDEP  
Sbjct: 115 ------------KEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162

Query: 168 ALDY---DGVRLLEYIIAEHRKKGGIVIVATH 196
            LD      +R    I   H + G   I  TH
Sbjct: 163 NLDAKLRVLMR--SEIKKLHERLGTTTIYVTH 192

Length = 338

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score = 97.8 bits (245), Expect = 1e-25
 Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 35/184 (19%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
             + +L+ V+++I  G  + + G +GSGKST L++L     P++GEIL +G D+    + 
Sbjct: 13  RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL- 71

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLS 140
              +  + ++  +D      T+ +N+                                LS
Sbjct: 72  ESLRKNIAYVP-QDPFLFSGTIRENI--------------------------------LS 98

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200
            GQR+R+ +AR L  D PI +LDE + ALD +   L+   +     KG  VIV  H    
Sbjct: 99  GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-KGKTVIVIAHRLST 157

Query: 201 IEDA 204
           I DA
Sbjct: 158 IRDA 161

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 96.9 bits (242), Expect = 1e-24
 Identities = 62/193 (32%), Positives = 96/193 (49%), Gaps = 15/193 (7%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+NVS        L  V++ I +G    L G +G GK+T LR++AGF  P++GEIL +G 
Sbjct: 3   LENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGK 62

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMG 127
           DIT       +K  +N +    A+    TV +N+ +   L+      +      AL+L+ 
Sbjct: 63  DITNLPP---HKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQ 119

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE---- 183
           L   A  K   LS GQ++R+ +AR L  +  + LLDEP  ALD    +L + +  E    
Sbjct: 120 LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL---KLRKDMQLELKRL 176

Query: 184 HRKKGGIVIVATH 196
            ++ G   +  TH
Sbjct: 177 QKELGITFVFVTH 189

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (253), Expect = 1e-24
 Identities = 55/189 (29%), Positives = 82/189 (43%), Gaps = 18/189 (9%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
            + +  L  +N++I  G    L G +G+GKST L +L GF  P+ GEI  NG D+     
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP 390

Query: 80  FHQYKLQLNWLS-----LKDAVKEKFTVLDNV----QWFEVLEGKQGNSLPALELMGLGR 130
              ++ Q++W+S         ++E   +        +    L+             GL  
Sbjct: 391 -EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPD-GLDT 448

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE---HRKK 187
           +  E    LS GQ +RL LAR L     + LLDEP+  LD +     E II +      K
Sbjct: 449 VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET----EQIILQALQELAK 504

Query: 188 GGIVIVATH 196
              V+V TH
Sbjct: 505 QKTVLVITH 513

Length = 559

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 96.9 bits (242), Expect = 1e-24
 Identities = 64/199 (32%), Positives = 96/199 (48%), Gaps = 15/199 (7%)

Query: 10  RLLLKNVSCMRNAQQI--LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           R+  +NVS     Q+I  L +V+++I  G  + + G  GSGKST L++LAG  KP++G +
Sbjct: 2   RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61

Query: 68  LWNGHDITQ---SGIFHQ--YKLQLNWL---SLKDAVKEKFTVLDNVQWFEVLEGKQGNS 119
           L +G DI Q   + +     Y  Q   L   +L+D +     + D+ +     E      
Sbjct: 62  LLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTD 121

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
                  GL     E+ R LS GQR+ + LAR L  D PI LLDEP+ A+D       E 
Sbjct: 122 FVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDM---NSEER 178

Query: 180 IIAEHRK--KGGIVIVATH 196
           +    R+      +I+ TH
Sbjct: 179 LKERLRQLLGDKTLIIITH 197

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 96.0 bits (240), Expect = 2e-24
 Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 24/185 (12%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS------- 77
            +  ++++++ G    L G NG+GK+T L+ML G  +P++G    NG+ I          
Sbjct: 17  AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQS 76

Query: 78  -GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMGLGRL 131
            G   Q           DA+ ++ TV ++++++  L+G   + +       L ++GL   
Sbjct: 77  LGYCPQ----------FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
           A ++AR LS G +++L LA  L     + LLDEP+  LD    R +  +I E RK   I+
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSII 186

Query: 192 IVATH 196
           +  TH
Sbjct: 187 L-TTH 190

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 95.7 bits (239), Expect = 3e-24
 Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 30/210 (14%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEI 67
           L++++     +  L+ +++ I  G    L G +G GKST LR+L   +      P  GE+
Sbjct: 3   LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNS 119
           L +G DI        Y L ++ L L+  V   F        ++ DNV +   L G +   
Sbjct: 63  LLDGKDI--------YDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKE 114

Query: 120 LP------ALELMGLGRLAKEK--ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
                   AL    L    K++  A  LS GQ++RL LAR LA +  + LLDEP+ ALD 
Sbjct: 115 ELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174

Query: 172 DGVRLLEYIIAEHRKKGGIVIVATHLPIQI 201
                +E +IAE +K+  IVIV TH   Q 
Sbjct: 175 ISTAKIEELIAELKKEYTIVIV-THNMQQA 203

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 95.8 bits (239), Expect = 5e-24
 Identities = 61/203 (30%), Positives = 103/203 (50%), Gaps = 21/203 (10%)

Query: 13  LKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
           +KN+S       Q L+ VN+ I+ G  + + G +G+GKST LR L G   P++GEIL+NG
Sbjct: 6   VKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNG 65

Query: 72  HDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV---------------QWFEVLEG 114
             IT  +     + +  +  +  +  +  + +VL+NV                 F   + 
Sbjct: 66  VQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK 125

Query: 115 KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV 174
            Q  +L ALE +G+   A ++A  LS GQ++R+ +AR L     I L DEP  +LD +  
Sbjct: 126 AQ--ALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183

Query: 175 R-LLEYIIAEHRKKGGIVIVATH 196
           + +++ +   +++ G  VIV  H
Sbjct: 184 KKVMDILKDINQEDGITVIVNLH 206

Length = 258

>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional

 Score = 93.8 bits (233), Expect = 8e-24
 Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 9/189 (4%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           Q+ L  ++I+        + G NG GKS+ LRM+AG  +PS+G I +   +I        
Sbjct: 13  QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA---- 68

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPA-LELMGLGRLAKEKARMLS 140
            K    ++     +K + TV +N++ W E+    +  +L A +    L  L  EK   LS
Sbjct: 69  -KPYCTYIGHNLGLKLEMTVFENLKFWSEIYNSAE--TLYAAIHYFKLHDLLDEKCYSLS 125

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200
            G +K + +ARL+A    +WLLDE    L  +   LL  +I      GGIV++++HL   
Sbjct: 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS 185

Query: 201 IEDAMNLRL 209
           I+ A  L+L
Sbjct: 186 IKSAQILQL 194

Length = 195

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 94.4 bits (236), Expect = 1e-23
 Identities = 52/166 (31%), Positives = 78/166 (46%), Gaps = 37/166 (22%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--------QS 77
           L  V+ S+  G    L G NG+GK+T   +++GF +P++G +L++G DIT        + 
Sbjct: 16  LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75

Query: 78  GI---FHQYKLQLNWLSLKDAVKEKFTVLDNVQ---------------WFEVLEGKQGNS 119
           GI   F     Q+        +  + TVL+NV                        +  +
Sbjct: 76  GIGRTF-----QIP------RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERA 124

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
              LE +GL  LA   A  LS GQ++RL++AR LA D  + LLDEP
Sbjct: 125 EELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 16/211 (7%)

Query: 6   PPLPRLLLKNVSCM-RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA 64
            P P L    VS      +  LR V+ ++  G  + L G +G+GKST L +L GF  P+ 
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376

Query: 65  GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE 124
           G I  NG  +  +        Q+ W+     +    T+ +N++     +        ALE
Sbjct: 377 GSIAVNGVPLADADADSWRD-QIAWVPQHPFLFAG-TIAENIR-LARPDASDAEIREALE 433

Query: 125 LMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
             GL                E    LS GQ +RL LAR    D P+ LLDEP+  LD + 
Sbjct: 434 RAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAET 493

Query: 174 VRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204
              +   +     +G  V++ TH       A
Sbjct: 494 EAEVLEALRALA-QGRTVLLVTHRLALAALA 523

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 93.1 bits (231), Expect = 2e-23
 Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 6/184 (3%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           Q +L+ ++  +  GG L L G+NG+GK+T L+++AG   P  GEIL+    I +      
Sbjct: 14  QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCT 71

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL-ELMGLGRLAKEKARMLSM 141
           Y+ QL ++  +  +    T+ +N   +++        +  L  L  L  L      +LS 
Sbjct: 72  YQKQLCFVGHRSGINPYLTLRENC-LYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSS 130

Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH--LPI 199
           GQ++++ L RL      +WLLDEP VALD   +  +   I EHR KGG V++ +H  LP+
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPL 190

Query: 200 QIED 203
              D
Sbjct: 191 NKAD 194

Length = 200

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 94.6 bits (236), Expect = 2e-23
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 18/158 (11%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           +  V++ + +G   V+ G +GSGKST LR +    +P++G++L +G DI         + 
Sbjct: 40  VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS-----RK 94

Query: 86  QLNWLSLKDA--VKEKF------TVLDNVQW-FEV----LEGKQGNSLPALELMGLGRLA 132
           +L  L  K    V + F      TVL+NV +  EV       ++  +  ALEL+GL    
Sbjct: 95  ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWE 154

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            +    LS G ++R+ LAR LA+D  I L+DE   ALD
Sbjct: 155 HKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 95.9 bits (239), Expect = 2e-23
 Identities = 61/203 (30%), Positives = 93/203 (45%), Gaps = 11/203 (5%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           + NV     A   L  +++ I  G  + L G +G+GKST LR++AG   P AG I  NG 
Sbjct: 5   INNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV------QWFEVLEGKQGNSLPA-LEL 125
            +           ++ ++    A+    TV DN+      +     E +    +   L L
Sbjct: 65  VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRL 124

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE-H 184
           + L  LA      LS GQR+R+ LAR LA++  + LLDEP  ALD    + L   + + H
Sbjct: 125 VQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLH 184

Query: 185 RKKGGIVIVATHLPIQIEDAMNL 207
            + G   +  TH     E+A+ L
Sbjct: 185 DRLGVTTVFVTHDQ---EEALEL 204

Length = 345

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score = 93.0 bits (232), Expect = 4e-23
 Identities = 59/194 (30%), Positives = 98/194 (50%), Gaps = 11/194 (5%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+ ++     + +L+ V++ +  G  L + G +GSGKST LR++ G  +P +GE+L +G 
Sbjct: 3   LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62

Query: 73  DITQSGIFHQYKLQLNW--LSLKDAVKEKFTVLDNVQWFEVLEGKQGNS-------LPAL 123
           DI+       Y+L+     L    A+ +  TV +NV  F + E  + +        L  L
Sbjct: 63  DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVA-FPLREHTRLSEEEIREIVLEKL 121

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
           E +GL          LS G +KR+ LAR LA+D  + L DEP+  LD     +++ +I  
Sbjct: 122 EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181

Query: 184 -HRKKGGIVIVATH 196
             ++ G   I+ TH
Sbjct: 182 LKKELGLTSIMVTH 195

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 92.3 bits (230), Expect = 4e-23
 Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 18/201 (8%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L L+N++     ++ L  V++++   G   L G NG+GK+T +R+LA  + PS+G I  +
Sbjct: 1   LQLENLTKRYGKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LEL 125
           G D+ +     + +  + +L  +  V   FTV + + +   L+G     + A     LEL
Sbjct: 60  GQDVLKQPQKLRRR--IGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYI--IA 182
           + LG  AK+K   LS G R+R+ +A+ L  D  I ++DEP+  LD  + +R    +  + 
Sbjct: 118 VNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG 177

Query: 183 EHRKKGGIVIVATHLPIQIED 203
           E R    IVI++TH+   +ED
Sbjct: 178 EDR----IVILSTHI---VED 191

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score = 92.9 bits (231), Expect = 5e-23
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
            Q +R V+    +G    L G NG+GK+T LRM+A    P +G++  +G D  +   F  
Sbjct: 15  VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSF-- 72

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMGLGRLAKEKAR 137
            + ++  L  +  +  + T  +N+++F  L G     + A      + + L      +  
Sbjct: 73  VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG 132

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
             S G ++++ +AR L  D  I +LDEP+  LD    R     I + + +G  VI ++H
Sbjct: 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191

Length = 245

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score = 92.2 bits (229), Expect = 9e-23
 Identities = 57/165 (34%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           + + N+S    + Q L  VN+ +  G  + L G +GSGKST LR++AG  +P +G I  N
Sbjct: 1   IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW-FEVL----EGKQGNSLPALEL 125
           G D T+    H    ++ ++    A+ +  TV DN+ +  E+        +      LEL
Sbjct: 61  GQDATR---VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLEL 117

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           + L  L       LS GQR+R+ LAR LA++  + LLDEP  ALD
Sbjct: 118 VQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score = 95.8 bits (239), Expect = 9e-23
 Identities = 57/204 (27%), Positives = 87/204 (42%), Gaps = 31/204 (15%)

Query: 13  LKNVS-CMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            +NVS         +L  +++ I  G  + + G +GSGKST L++L G  KP  G IL +
Sbjct: 474 FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL----- 125
           G D+    +    + Q+ ++ L+D      ++ +N     +  G    +   +       
Sbjct: 534 GVDLNDIDL-ASLRRQVGYV-LQDPFLFSGSIREN-----IALGNPEATDEEIIEAAQLA 586

Query: 126 ----------MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR 175
                     MG      E    LS GQR+RL LAR L     I LLDE + ALD +   
Sbjct: 587 GAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE--- 643

Query: 176 LLEYIIAE--HRKKGGI-VIVATH 196
             E II +   +   G  VI+  H
Sbjct: 644 -TEAIILQNLLQILQGRTVIIIAH 666

Length = 709

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 91.9 bits (229), Expect = 1e-22
 Identities = 69/223 (30%), Positives = 111/223 (49%), Gaps = 46/223 (20%)

Query: 13  LKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
           ++N+S    N ++ L+ V++SI+ G  + L G +G+GKST LR L G  +P++G +L +G
Sbjct: 3   VENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDG 62

Query: 72  HDITQSG-------------IFHQYKLQLNWLSLKDAVKEKFTVLDNV------------ 106
            DI +               IF Q+ L            E+ +VL+NV            
Sbjct: 63  TDINKLKGKALRQLRRQIGMIFQQFNL-----------IERLSVLENVLSGRLGRRSTWR 111

Query: 107 ---QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
                F   E KQ  +L ALE +GL   A ++A  LS GQ++R+ +AR L     + L D
Sbjct: 112 SLFGLFPKEE-KQ-RALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169

Query: 164 EPSVALDYDGVR-LLEYIIAEHRKKGGIVIVATHLPIQIEDAM 205
           EP  +LD    R +++ +   +R++G  VIV+ H   Q++ A 
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGITVIVSLH---QVDLAR 209

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score = 91.5 bits (228), Expect = 1e-22
 Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 49/231 (21%)

Query: 11  LLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           +  +NVS      ++ LR V+  I  G  + LTG +G+GKST L+++ G  +P+ G+IL 
Sbjct: 2   IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61

Query: 70  NGHDIT------------QSGIFHQ-YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116
           NGHD++            Q G+  Q ++L      L D      TV +NV     + GK 
Sbjct: 62  NGHDLSRLKGREIPFLRRQIGVVFQDFRL------LPD-----RTVYENVALPLRVIGKP 110

Query: 117 GNS-----LPALELMGLGRLAKEKARM----LSMGQRKRLQLARLLAIDRPIWLL-DEPS 166
                      L+L+GL    K KAR     LS G+++R+ +AR + +++P  LL DEP+
Sbjct: 111 PREIRRRVSEVLDLVGL----KHKARALPSQLSGGEQQRVAIARAI-VNQPAVLLADEPT 165

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRM 217
             LD D    +  +  E  + G  V++ATH         +L L  R   R+
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATH---------DLELVNRMRHRV 207

Length = 223

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 92.2 bits (230), Expect = 1e-22
 Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 33/221 (14%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P L ++ +S        +  V++ +  G  + L G NG+GK+T   ++ GF KPS+G ++
Sbjct: 3   PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62

Query: 69  WNGHDITQSGIFHQYKLQL-----NWLSLKDAVKEKFTVLDNV----------------- 106
           + G DIT        +L +                  TVL+NV                 
Sbjct: 63  FRGRDITGLPPHRIARLGIARTFQITRLFPG-----LTVLENVAVGAHARLGLSGLLGRP 117

Query: 107 QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
           +  +     +  +   LE +GLG LA   A  LS GQ++RL++AR LA    + LLDEP+
Sbjct: 118 RARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
             L+ +    L  +I E R +GG+ I+       IE  M L
Sbjct: 178 AGLNPEETEELAELIRELRDRGGVTILL------IEHDMKL 212

Length = 250

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 90.7 bits (226), Expect = 4e-22
 Identities = 57/196 (29%), Positives = 105/196 (53%), Gaps = 12/196 (6%)

Query: 7   PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
            +  L+ +N++     ++++  V++ ++ G  + L G NG+GK+T   M+ G  +P +G+
Sbjct: 1   DMSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA---- 122
           IL +  DIT+  +  + +L + +L  + ++  K TV DN+    VLE ++ +   A    
Sbjct: 61  ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKE 118

Query: 123 -----LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177
                LE   +  L   KA  LS G+R+R+++AR LA +    LLDEP   +D   V  +
Sbjct: 119 ELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178

Query: 178 EYIIAEHRKKG-GIVI 192
           + II   + +G G++I
Sbjct: 179 QRIIKHLKDRGIGVLI 194

Length = 243

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 90.2 bits (224), Expect = 4e-22
 Identities = 54/194 (27%), Positives = 104/194 (53%), Gaps = 8/194 (4%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L  KN+S     Q  + ++++++       L G NG+GKST L+M+ G  +P++GEI+++
Sbjct: 1   LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFD 60

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLG 129
           GH  T+  +      ++  L     + E  T  +N++    L G         L ++ L 
Sbjct: 61  GHPWTRKDL-----HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT 115

Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
              K+KA+  S+G ++RL +A  L ++ P + +LDEP+  LD  G++ L  +I    ++G
Sbjct: 116 NTGKKKAKQFSLGMKQRLGIAIAL-LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQG 174

Query: 189 GIVIVATHLPIQIE 202
             VI+++H+  +++
Sbjct: 175 ITVILSSHILSEVQ 188

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 69/210 (32%), Positives = 106/210 (50%), Gaps = 26/210 (12%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
            +NVS     ++ +  VN++I +G  LVL G +GSGK+T L+M+    +P++GEIL +G 
Sbjct: 4   FENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGE 63

Query: 73  DI-TQSGIFHQ----YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-------KQGNSL 120
           DI     +  +    Y +Q   L          TV +N+     L G       K+ + L
Sbjct: 64  DISDLDPVELRRKIGYVIQQIGLF------PHLTVAENIATVPKLLGWDKERIKKRADEL 117

Query: 121 PALELMGL--GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLL 177
             L+L+GL     A      LS GQ++R+ +AR LA D PI L+DEP  ALD     +L 
Sbjct: 118 --LDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175

Query: 178 EYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
           E I    ++ G  ++  TH    I++A+ L
Sbjct: 176 EEIKELQKELGKTIVFVTH---DIDEALKL 202

Length = 309

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 53/198 (26%), Positives = 95/198 (47%), Gaps = 10/198 (5%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L ++NV+        L  ++ S+  G    L G NG+GK+T +RM+ G   P +GE+L++
Sbjct: 1   LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALEL 125
           G  +  +         + +L  +  +  K  V+D + +   L+G      +      LE 
Sbjct: 61  GKPLDIAARNR-----IGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           + L   A ++   LS G ++++Q    +  D  + +LDEP   LD   V LL+ +I E  
Sbjct: 116 LELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA 175

Query: 186 KKGGIVIVATHLPIQIED 203
           + G  VI++TH    +E+
Sbjct: 176 RAGKTVILSTHQMELVEE 193

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 88.5 bits (220), Expect = 2e-21
 Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 24/231 (10%)

Query: 6   PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
              P + LKNVS  RN ++IL  ++  ++ G    + G NG+GK+T L +L G   PS+G
Sbjct: 27  INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86

Query: 66  EILWNGHDITQSGIFHQYKLQLNWLS--LKDAVKEKFTVLDNV--QWFEVLEGKQGNSLP 121
           ++   G    +     + + ++  +S  L +  + + TV D V   +F  + G     L 
Sbjct: 87  DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASI-GIYQEDLT 145

Query: 122 A---------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
           A         LEL+G   LA      LS G+++R+ +AR L  D  + +LDEP+  LD  
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205

Query: 173 GV-RLLEYIIAEHRKKGGI-VIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
              +LL  +       G   ++  TH     E+      PP F  R+ L +
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTH---HAEEI-----PPCFTHRLLLKE 248

Length = 257

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 55/164 (33%), Positives = 81/164 (49%), Gaps = 30/164 (18%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------- 76
           +   ++ + +G   V+ G +GSGKST +R+L    +P+ GEIL +G DI +         
Sbjct: 44  VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103

Query: 77  -----SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW-FEV----LEGKQGNSLPALELM 126
                S +F  + L L             TVL+NV +  EV       ++  +L ALEL+
Sbjct: 104 RRKKISMVFQSFAL-LPHR----------TVLENVAFGLEVQGVPKAEREERALEALELV 152

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           GL   A +    LS G ++R+ LAR LA D  I L+DE   ALD
Sbjct: 153 GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score = 87.8 bits (218), Expect = 4e-21
 Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 32/164 (19%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI------ 79
           L  V++ I  G  + L G +GSGK+T LR++AG  +P +G IL+ G D T   +      
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVG 77

Query: 80  --FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----------LELM 126
             F  Y           A+    TV DNV +   L  K  +  P            L+L+
Sbjct: 78  FVFQHY-----------ALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLV 124

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            L  LA      LS GQR+R+ LAR LA++  + LLDEP  ALD
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 89.9 bits (223), Expect = 4e-21
 Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 18/177 (10%)

Query: 4   RKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
           RK   P L ++N++   + Q  +  V+++I+ G    L G +G GKST LRMLAGF +P+
Sbjct: 13  RKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT 72

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA- 122
           AG+I+ +G D++       Y+  +N +    A+    TV  N+ +     G + + LP  
Sbjct: 73  AGQIMLDGVDLSH---VPPYQRPINMMFQSYALFPHMTVEQNIAF-----GLKQDKLPKA 124

Query: 123 ---------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                    L L+ +   AK K   LS GQR+R+ LAR LA    + LLDEP  ALD
Sbjct: 125 EIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181

Length = 377

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 87.2 bits (217), Expect = 6e-21
 Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 34/204 (16%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           +KN+S     +++L+ +++S+  G  +V+ G +GSGKST LR L G  +P +G I  +G 
Sbjct: 5   IKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64

Query: 73  DITQSGIFHQYKLQLNWLSLKDA-VKEKF------TVLDNVQWFEVLEG----------- 114
           D+         K  +  L  K   V ++F      TVL+N     V              
Sbjct: 65  DVG-------DKKDILKLRRKVGMVFQQFNLFPHLTVLEN-----VTLAPVKVKKLSKAE 112

Query: 115 --KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
             ++   L  LE +GL   A      LS GQ++R+ +AR LA+D  + L DEP+ ALD +
Sbjct: 113 AREKALEL--LEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE 170

Query: 173 GVRLLEYIIAEHRKKGGIVIVATH 196
            V  +  ++ +  ++G  +I+ TH
Sbjct: 171 LVGEVLDVMKDLAEEGMTMIIVTH 194

Length = 240

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 85.0 bits (211), Expect = 1e-20
 Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 36/196 (18%)

Query: 11  LLLKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           L ++NVS         +LR+V+ SI  G +L + G +GSGKST  R++ G  +P++G + 
Sbjct: 1   LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL 128
            +G DI+Q           +   L D V     +  + + F                   
Sbjct: 61  LDGADISQ----------WDPNELGDHVG---YLPQDDELFS------------------ 89

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
           G +A+    +LS GQR+RL LAR L  +  I +LDEP+  LD +G R L   IA  +  G
Sbjct: 90  GSIAEN---ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146

Query: 189 GIVIVATHLPIQIEDA 204
              IV  H P  +  A
Sbjct: 147 ATRIVIAHRPETLASA 162

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 85.7 bits (213), Expect = 1e-20
 Identities = 48/178 (26%), Positives = 93/178 (52%), Gaps = 8/178 (4%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           +++L  +++ +  G      G NG+GK+T ++++ G  KP +GEI ++G           
Sbjct: 13  KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG-----KSYQKN 67

Query: 83  YKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEGKQGNSL-PALELMGLGRLAKEKARML 139
            +      +L +A       T  +N++    L G +   +   L+++GL   AK+K +  
Sbjct: 68  IEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGF 127

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
           S+G ++RL +A  L  +  + +LDEP+  LD DG++ L  +I   R +G  V++++HL
Sbjct: 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHL 185

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score = 85.4 bits (212), Expect = 2e-20
 Identities = 59/211 (27%), Positives = 92/211 (43%), Gaps = 38/211 (18%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ------- 76
             L  V++ I  G  L LTG +G+GK+T L++L G   PS G++   G D+ +       
Sbjct: 16  AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLP 75

Query: 77  ------SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALEL 125
                   +F  ++L  +            TV +NV     + GK+   +      AL  
Sbjct: 76  LLRRRIGVVFQDFRLLPD-----------RTVYENVALPLEVRGKKEREIQRRVGAALRQ 124

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +GL   A      LS G+++R+ +AR +    P+ L DEP+  LD D    +  ++    
Sbjct: 125 VGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN 184

Query: 186 KKGGIVIVATHLPIQIEDAMNLRLPPRFPRR 216
           K+G  VIVATH         +L L  R   R
Sbjct: 185 KRGTTVIVATH---------DLSLVDRVAHR 206

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 86.4 bits (215), Expect = 2e-20
 Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 30/177 (16%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD 73
           +N+S     + +L  V++++  G  + + G NG+GKST LR L+G   P +GE+  NG  
Sbjct: 6   RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65

Query: 74  ITQSGIFHQYKLQLNWLSLKDAVKEK-------FTVLDNVQ-----WFEVLEGKQGNSLP 121
           +        +      L+ + AV  +       FTV + V          L   + ++L 
Sbjct: 66  L------ADWSPAE--LARRRAVLPQHSSLSFPFTVEEVVAMGRAPH--GLSRAEDDALV 115

Query: 122 --ALELMGLGRLAKEKARMLSMGQRKRLQLARLLA------IDRPIWLLDEPSVALD 170
             AL  + L  LA      LS G+++R+QLAR+LA            LLDEP+ ALD
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD 172

Length = 258

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 31/209 (14%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+N+S     + +L +V+++++ G  + L G NG+GKST L++LAG  +P +GE+     
Sbjct: 6   LENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG 65

Query: 73  -------------------DITQSGIFHQYKL--QLNWLSLK--DAVKEKFTVLDNVQWF 109
                              D    G     +L  +L        D   E    L+ +   
Sbjct: 66  LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEAL--L 123

Query: 110 EVLEGKQGNSLPALELMGLGRLAKEKARM--LSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
           E L+G    +     L+GLG    E   +  LS G R+R+ LAR L  +  + LLDEP+ 
Sbjct: 124 EELDGWTLEARAEEALLGLG-FPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTN 182

Query: 168 ALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            LD + +  LE  +  +    G VIV +H
Sbjct: 183 HLDLESIEWLEDYLKRYP---GTVIVVSH 208

Length = 530

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 84.4 bits (209), Expect = 3e-20
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 29/191 (15%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           ++L+ +N +   G  L L G NG+GKST L  L G  +P +G +L +G  +  S      
Sbjct: 6   EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR----- 60

Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQ--------WFEVLEGKQGNSLP----------ALEL 125
                   L +  +    V  +            +V  G     L           AL  
Sbjct: 61  ------KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTA 114

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +G   L +     LS G++KR+ +A  +A+   + LLDEP+  LD  G   +  I+   R
Sbjct: 115 VGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174

Query: 186 KKGGIVIVATH 196
            +G  V+++TH
Sbjct: 175 AEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 85.4 bits (212), Expect = 4e-20
 Identities = 66/216 (30%), Positives = 107/216 (49%), Gaps = 43/216 (19%)

Query: 11  LLLKNVSCM-RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           L ++N+S +  N +Q L+++N++I+ G  + + G +G+GKST LR +    +PS+G IL 
Sbjct: 2   LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61

Query: 70  NGHDITQSG-------------IFHQYKLQLNWLSLKDAVKEKFTVLDNV---------- 106
            G DIT+               IF  Y L            E+ TVL+NV          
Sbjct: 62  EGTDITKLRGKKLRKLRRRIGMIFQHYNL-----------IERLTVLENVLHGRLGYKPT 110

Query: 107 -----QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161
                  F   E  +  +L ALE +GL   A ++A  LS GQ++R+ +AR LA    + L
Sbjct: 111 WRSLLGRFS--EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLIL 168

Query: 162 LDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATH 196
            DEP  +LD     ++++Y+   +++ G  VI+  H
Sbjct: 169 ADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLH 204

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score = 84.2 bits (209), Expect = 4e-20
 Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 8/194 (4%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           LKN+S     + IL  +N++I  G    + G +GSGKST L ++    K  +G++  NG 
Sbjct: 1   LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60

Query: 73  DITQSGIFHQYKLQLNWLS--LKD-AVKEKFTVLDNVQW---FEVLEGKQGNSL--PALE 124
           +          K +   L    ++ A+ E  TV +N+     ++ L  K+       ALE
Sbjct: 61  ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
            +GL    K+K   LS G+++R+ LAR +    P+ L DEP+ +LD      +  ++ E 
Sbjct: 121 KVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLEL 180

Query: 185 RKKGGIVIVATHLP 198
             +G  +I+ TH P
Sbjct: 181 NDEGKTIIIVTHDP 194

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 86.9 bits (216), Expect = 5e-20
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 34/181 (18%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P + L+ +S   + ++++ +++++I++G  L L G +G GK+T LR++AGF  P +G I+
Sbjct: 13  PLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72

Query: 69  WNGHDITQ--------SGIFHQYKLQLNWLSLKDAVKEKF---TVLDNVQWFEVLEGKQG 117
            +G DIT         + +F  Y L              F   TV +NV  F +   K  
Sbjct: 73  LDGQDITHVPAENRHVNTVFQSYAL--------------FPHMTVFENVA-FGLRMQKTP 117

Query: 118 NS------LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALD 170
            +      + AL ++ L   A+ K   LS GQ++R+ +AR + +++P + LLDE   ALD
Sbjct: 118 AAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV-VNKPKVLLLDESLSALD 176

Query: 171 Y 171
           Y
Sbjct: 177 Y 177

Length = 375

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 81.6 bits (202), Expect = 5e-20
 Identities = 37/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 50  STFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF 109
           ST L+++ G  +P++G IL +G D T        + ++  +     +  + TV +N+  F
Sbjct: 1   STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL--F 58

Query: 110 EVLEGKQGNS--LPALELMGL-GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
             L  K+ ++    ALE +GL   L +E    LS GQ++R+ +AR L     + LLDEP
Sbjct: 59  FGLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEP 117

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 85.9 bits (213), Expect = 7e-20
 Identities = 53/178 (29%), Positives = 85/178 (47%), Gaps = 15/178 (8%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD--------ITQSGIF 80
           ++  I  G  +   G NG+GKST L+ML G   P++G++  NG D        +   G+ 
Sbjct: 43  ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLV 102

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL-ELMGLGRLAKEKARML 139
              KLQL W        +   VL  +  +E+ + +    L  L E++ L    K   R L
Sbjct: 103 MGQKLQLWW---DLPALDSLEVLKLI--YEIPDDEFAERLDFLTEILDLEGFLKWPVRKL 157

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKKGGIVIVATH 196
           S+GQR R +LA  L     +  LDEP+V LD +    + E++   + ++   V++ TH
Sbjct: 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215

Length = 325

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score = 85.9 bits (213), Expect = 9e-20
 Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 29/206 (14%)

Query: 7   PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
             P L + N+     A   L+ +++S+  G  + L G +G GK+T LR++AG  + +AG 
Sbjct: 1   SSPYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60

Query: 67  ILWNGHDITQS-------GI-FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN 118
           I   G DIT+        GI F  Y L  N            TV DN+ +   L+ +   
Sbjct: 61  IYQGGRDITRLPPQKRDYGIVFQSYALFPN-----------LTVADNIAYG--LKNRGMG 107

Query: 119 S-------LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
                      L+L+GL    ++    LS GQ++R+ LAR LA    + LLDEP  ALD 
Sbjct: 108 RAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDA 167

Query: 172 D-GVRLLEYIIAEHRKKGGIVIVATH 196
                L   I    R+ G   I+ TH
Sbjct: 168 RVREHLRTEIRQLQRRLGVTTIMVTH 193

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 83.3 bits (206), Expect = 1e-19
 Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 20/190 (10%)

Query: 28  HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGI 79
           H +++   G    + G +GSGKST L ++AGF  P +G +L NG D+T         S +
Sbjct: 16  HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARML 139
           F +  L    L+++  V      L      ++    +     AL  +GL  L K     L
Sbjct: 76  FQENNL-FAHLTVEQNVG-----LGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL 129

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR--LLEYIIAEHRKKGGIVIVATHL 197
           S G+R+R+ LAR+L  D+P+ LLDEP  ALD   +R  +L+ ++  H +    V++ TH 
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALD-PALRAEMLDLVLDLHAETKMTVLMVTH- 187

Query: 198 PIQIEDAMNL 207
             Q EDA  L
Sbjct: 188 --QPEDAKRL 195

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 83.0 bits (206), Expect = 1e-19
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 29/202 (14%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           +KN+        +L+ +++++  G  +V+ G +GSGKST LR +    +P +G I+ +G 
Sbjct: 3   IKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGL 62

Query: 73  DITQSG------------IFHQYKLQLNWLSLKDAVKEKFTVLDNV----QWFEVLEGKQ 116
            +T               +F Q+ L  +            TVL+N+       + +   +
Sbjct: 63  KLTDDKKNINELRQKVGMVFQQFNLFPH-----------LTVLENITLAPIKVKGMSKAE 111

Query: 117 G--NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV 174
               +L  LE +GL   A      LS GQ++R+ +AR LA++  + L DEP+ ALD + V
Sbjct: 112 AEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171

Query: 175 RLLEYIIAEHRKKGGIVIVATH 196
             +  ++ +  ++G  ++V TH
Sbjct: 172 GEVLDVMKDLAEEGMTMVVVTH 193

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score = 86.3 bits (214), Expect = 1e-19
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 25/211 (11%)

Query: 4   RKPPLPRLLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62
            K  +  +  +NVS      + +L+ ++ SI  G  + + G +GSGKST +++L     P
Sbjct: 322 LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381

Query: 63  SAGEILWNGHDITQSGIFHQYKLQLNWL------SLKDAVKEKFTVLDNVQWF------- 109
           ++GEIL +G DI          + L+ L        +D +    T+ +N+          
Sbjct: 382 TSGEILIDGIDIRD--------ISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDE 433

Query: 110 EVLE-GKQGNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
           E+ E  K  N+   +  +  G   +  E+   LS GQR+RL +AR L  + PI +LDE +
Sbjct: 434 EIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEAT 493

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
            ALD +   L++  + +  K    +I+A  L
Sbjct: 494 SALDTETEALIQDALKKLLKGRTTLIIAHRL 524

Length = 567

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 83.1 bits (206), Expect = 1e-19
 Identities = 62/216 (28%), Positives = 97/216 (44%), Gaps = 38/216 (17%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           + L+NV+        L  +N+ I DG  +VL G +G GK+T LRM+AG  +P++G I   
Sbjct: 1   VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60

Query: 71  GHDITQ--------SGIFHQYKLQLNW-------LSLKDAVKEKFTVLDNVQWFEVLEGK 115
           G D+T         + +F  Y L  +          LK     K  + + V+        
Sbjct: 61  GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVRE------- 113

Query: 116 QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR 175
                   EL+ +  L   K + LS GQR+R+ L R +  +  ++L+DEP   LD    +
Sbjct: 114 ------VAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD---AK 164

Query: 176 LLEYIIAE----HRKKGGIVIVATHLPIQIEDAMNL 207
           L   + AE     ++ G   I  TH   Q+E AM +
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTH--DQVE-AMTM 197

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 83.2 bits (206), Expect = 2e-19
 Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 34/194 (17%)

Query: 28  HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGI 79
             ++++  G  + + G +G+GKST L ++AGF  P++GEIL NG D T         S +
Sbjct: 17  RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76

Query: 80  FHQYKL-------QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
           F +  L       Q   L L   +K     L+  Q  E +E        A   +GL    
Sbjct: 77  FQENNLFAHLTVAQNIGLGLSPGLK-----LNAEQR-EKVEA-------AAAQVGLAGFL 123

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR--LLEYIIAEHRKKGGI 190
           K     LS GQR+R+ LAR L  ++PI LLDEP  ALD   +R  +L  +     ++   
Sbjct: 124 KRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLALVSQLCDERKMT 182

Query: 191 VIVATHLPIQIEDA 204
           +++ TH     EDA
Sbjct: 183 LLMVTH---HPEDA 193

Length = 231

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 62/210 (29%), Positives = 99/210 (47%), Gaps = 28/210 (13%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L +  +S    A++ L  V+ ++  G  + L G NG+GKST   +L        G+I   
Sbjct: 2   LEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61

Query: 71  GHDITQS--------GI-FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQ 116
           GHD+ ++        G+ F Q  L L+            +V  N+++   L G      +
Sbjct: 62  GHDLRRAPRAALARLGVVFQQPTLDLD-----------LSVRQNLRYHAALHGLSRAEAR 110

Query: 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVR 175
                 L  +GL   A +K R L+ G R+R+++AR L + RP + LLDEP+V LD     
Sbjct: 111 ARIAELLARLGLAERADDKVRELNGGHRRRVEIARAL-LHRPALLLLDEPTVGLDPASRA 169

Query: 176 -LLEYIIAEHRKKGGIVIVATHLPIQIEDA 204
            +  ++ A  R +G  V+ ATHL  +IE  
Sbjct: 170 AITAHVRALARDQGLSVLWATHLVDEIEAD 199

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 83.3 bits (206), Expect = 3e-19
 Identities = 69/220 (31%), Positives = 102/220 (46%), Gaps = 41/220 (18%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-----I 79
            L  V+++I  G  +V+ G +G GK+T L ++AGF  PS G I  NG  I   G     +
Sbjct: 20  ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVV 79

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKE 134
           F    L L WL           V+DNV +   L G     ++  +   L L+GL     +
Sbjct: 80  FQNEAL-LPWL----------NVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHK 128

Query: 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIV 193
               LS G R+R+ +AR LA++  + LLDEP  ALD     ++ E ++   ++ G  V++
Sbjct: 129 YIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188

Query: 194 ATHLPIQIEDAMNL----------------RLPPRFPRRM 217
            TH    IE+A+ L                RLP  F RR 
Sbjct: 189 ITH---DIEEALFLATRLVVLSPGPGRVVERLPLDFARRY 225

Length = 259

>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

 Score = 85.2 bits (211), Expect = 3e-19
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 25/147 (17%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ----------SG 78
           +N++I  G  + L G NGSGKST   +L G  +P +GEIL +G  ++           S 
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401

Query: 79  IFHQYKLQLNWLSLKDAVKEKFTVLDNV-QWFEVLEGKQGNSLPALELMGLGRLAKEKAR 137
           +F  Y      L  +    E       + +W + LE           L   GR +  K  
Sbjct: 402 VFSDY-----HLFDQLLGPEGKASPQLIEKWLQRLELAH-----KTSLND-GRFSNLK-- 448

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDE 164
            LS GQ+KRL L   L  +R I +LDE
Sbjct: 449 -LSTGQKKRLALLLALLEERDILVLDE 474

Length = 546

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 84.2 bits (209), Expect = 7e-19
 Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 19/189 (10%)

Query: 11  LLLKNVSC-MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           L  +NVS      + +L+ ++  I  G  + + G NG+GKST L++LAG   P +G +  
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL- 128
                 + G F Q+  +      K       TVL+ +      +G +      L   G  
Sbjct: 382 GET--VKIGYFDQH--RDELDPDK-------TVLEEL-SEGFPDGDEQEVRAYLGRFGFT 429

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           G   ++   +LS G++ RL LA+LL    P + LLDEP+  LD + +  LE  + +    
Sbjct: 430 GEDQEKPVGVLSGGEKARLLLAKLLL-QPPNLLLLDEPTNHLDIESLEALEEALLDFE-- 486

Query: 188 GGIVIVATH 196
            G V++ +H
Sbjct: 487 -GTVLLVSH 494

Length = 530

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 81.4 bits (201), Expect = 7e-19
 Identities = 57/218 (26%), Positives = 108/218 (49%), Gaps = 15/218 (6%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L LK V  +    +IL ++++S+  G  + +TG +G GKST L+++A    P++G +L
Sbjct: 2   MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-- 126
           + G D++       Y+ Q+++ +   A+    TV DN+ +   +  ++ +   AL+L+  
Sbjct: 62  FEGEDVSTLKP-EAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLAR 119

Query: 127 -GLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
             L   +  +    LS G+++R+ L R L     I LLDE + ALD    R +E +I  +
Sbjct: 120 FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRY 179

Query: 185 RKKGGIVIV-ATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
            ++  + ++  TH   Q   A+         + +TL  
Sbjct: 180 VREQNVAVLWITHDKDQ---AIRH-----ADKVITLQP 209

Length = 223

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 81.4 bits (201), Expect = 9e-19
 Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 17/154 (11%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-----IF 80
           L+ VN++I  G  + L G +G GKST L +++G ++P++G ++  G  IT+ G     +F
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60

Query: 81  HQYKLQLNWLSLKD----AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKA 136
             Y L L WL++++    AV      L   +   ++E         + L+GL   A ++ 
Sbjct: 61  QNYSL-LPWLTVRENIALAVDRVLPDLSKSERRAIVEEH-------IALVGLTEAADKRP 112

Query: 137 RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
             LS G ++R+ +AR L+I   + LLDEP  ALD
Sbjct: 113 GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 81.0 bits (201), Expect = 1e-18
 Identities = 54/188 (28%), Positives = 92/188 (48%), Gaps = 5/188 (2%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L ++N+S      Q LR V++ +  G  + L G NG+GK+T L+ + G  +P +G I+++
Sbjct: 4   LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM---- 126
           G DIT      + +L + ++     +  + TV +N+         +      LE +    
Sbjct: 64  GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELF 123

Query: 127 -GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
             L     ++A  LS G+++ L +AR L     + LLDEPS  L    V  +   I E R
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183

Query: 186 KKGGIVIV 193
           K+GG+ I+
Sbjct: 184 KEGGMTIL 191

Length = 237

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 32/177 (18%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
             QQ+L+++++ +  G  + L G +GSGKST L++L G  KP  GEI  +G  +      
Sbjct: 13  QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV------ 66

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLS 140
                      L+ A+    +VL+  Q   + +    N+L                R  S
Sbjct: 67  ---------SDLEKALSSLISVLN--QRPYLFDTTLRNNL---------------GRRFS 100

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
            G+R+RL LAR+L  D PI LLDEP+V LD    R L  +I E  K   ++ +  HL
Sbjct: 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHL 157

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 79.9 bits (198), Expect = 2e-18
 Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 48/198 (24%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEIL 68
           L +K++      ++IL+ VN++I  G    L G NGSGKST  + + G    + + GEIL
Sbjct: 1   LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEIL 60

Query: 69  WNGHDITQ--------SGIF--HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN 118
           + G DIT          GIF   QY  ++  +   D ++             V EG    
Sbjct: 61  FKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR------------YVNEG---- 104

Query: 119 SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
                                S G++KR ++ +LL ++  + +LDEP   LD D +RL+ 
Sbjct: 105 --------------------FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVA 144

Query: 179 YIIAEHRKKGGIVIVATH 196
            +I + R++G  V++ TH
Sbjct: 145 EVINKLREEGKSVLIITH 162

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score = 80.1 bits (198), Expect = 2e-18
 Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 13/181 (7%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  +NISI  G  + L G +G+GKST L+++     P++G I  NG D++         +
Sbjct: 17  LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSD---LRGRAI 73

Query: 86  QLNWLSLKDAVKE-----KFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEK 135
                 +    ++        V +NV +   + G     +      ALEL+GL    +  
Sbjct: 74  PYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL 133

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVAT 195
              LS G+++R+ +AR +     I + DEP+  LD D    +  ++ +  K G  V+VAT
Sbjct: 134 PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVAT 193

Query: 196 H 196
           H
Sbjct: 194 H 194

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 29/163 (17%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------- 78
           L  V++ I  G    + G +G+GKST LR++    +P++G +  +G D+T          
Sbjct: 22  LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81

Query: 79  ------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMG 127
                 IF  + L    LS +       TV +NV +   L G      +      LEL+G
Sbjct: 82  RQKIGMIFQHFNL----LSSR-------TVFENVAFPLELAGVPKAEIKQRVAELLELVG 130

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L   A      LS GQ++R+ +AR LA +  I L DE + ALD
Sbjct: 131 LSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173

Length = 339

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score = 79.7 bits (197), Expect = 3e-18
 Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 32/214 (14%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSG 78
           ++L+ V++SI  G  + + G++GSGKST L +L G   P++GE+L+NG  +      +  
Sbjct: 19  RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78

Query: 79  IFHQYKL----QLNWLSLKDAVKEKFTVLDNVQW------FEVLEGKQGNSLPALELMGL 128
                KL    Q + L L D     FT L+NV          V E K+  +   LE +GL
Sbjct: 79  KLRNKKLGFIYQFHHL-LPD-----FTALENVAMPLLIGKKSVKEAKE-RAYEMLEKVGL 131

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHRKK 187
                 +   LS G+R+R+ +AR L     + L DEP+  LD +  + + + ++  +R+ 
Sbjct: 132 EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191

Query: 188 GGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
               +V TH         +L L  +  R + + D
Sbjct: 192 NTSFLVVTH---------DLELAKKLDRVLEMKD 216

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 79.9 bits (197), Expect = 3e-18
 Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 21/195 (10%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
            K VS     ++IL+ +++    G    + G +G+GKST ++++     P+ G IL +G 
Sbjct: 6   FKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGV 65

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQG-NSLPAL 123
           DI    +          + L+  +   F        TV DN+++  +L+G++  +    L
Sbjct: 66  DIKTIDV----------IDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYL 115

Query: 124 ELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
            ++GL +  A    + LS G+ +R+ +AR LA +  + LLDEP+ ALD     ++E +I 
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175

Query: 183 EHRKKGGI-VIVATH 196
           + + K  + VI  TH
Sbjct: 176 KLKNKMNLTVIWITH 190

Length = 241

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 80.9 bits (200), Expect = 4e-18
 Identities = 53/199 (26%), Positives = 101/199 (50%), Gaps = 10/199 (5%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L ++ V+     ++ + +++  +  G    L G NG+GK+T  RM+ G  +P+ GEI 
Sbjct: 1   MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPA-L 123
           WNG  ++Q     + K ++ +L  +  +  K TV D +++   L+G    +    L A L
Sbjct: 61  WNGGPLSQ-----EIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWL 115

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
           E + +     +K + LS G ++++Q    +  +  + +LDEP   LD   V LL+  I E
Sbjct: 116 ERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175

Query: 184 HRKKGGIVIVATHLPIQIE 202
            +++G  +I ++H    +E
Sbjct: 176 LKEEGATIIFSSHRMEHVE 194

Length = 300

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score = 82.0 bits (203), Expect = 4e-18
 Identities = 64/208 (30%), Positives = 102/208 (49%), Gaps = 35/208 (16%)

Query: 11  LLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           L L+NVS        + L++ N+++  G  + + G +GSGKST L++LAG   P  G I 
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396

Query: 69  WNGHDI---TQSGIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNS---- 119
            NG +I    +  +       ++ L+ +  +   F  T+ DN++           S    
Sbjct: 397 LNGVEIASLDEQALRET----ISVLTQRVHL---FSGTLRDNLRL-----ANPDASDEEL 444

Query: 120 LPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
             AL+ +GL +L +           E  R LS G+R+RL LAR L  D P+WLLDEP+  
Sbjct: 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504

Query: 169 LDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           LD    R +  ++ EH  +G  +++ TH
Sbjct: 505 LDPITERQVLALLFEH-AEGKTLLMVTH 531

Length = 573

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 80.6 bits (199), Expect = 6e-18
 Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 41  LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF 100
           L G +G GK+T LR+LAGF +P +G I+ +G D+T       +   +N +    A+    
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP---PHLRHINMVFQSYALFPHM 57

Query: 101 TVLDNVQWFEVLEGKQGNS------LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA 154
           TV +NV  F +   K   +      L AL L+ L   A  K   LS GQ++R+ LAR L 
Sbjct: 58  TVEENVA-FGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALV 116

Query: 155 IDRPIWLLDEPSVALDYDGVRLLEY-IIAEHRKKGGIVIVATH 196
               I LLDEP  ALD      ++  +     + G   +  TH
Sbjct: 117 FKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 80.5 bits (199), Expect = 7e-18
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 12/156 (7%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           Q+L  +++ I  G  + L G +GSGK+T LR++AG    ++G I ++G D+++    H  
Sbjct: 16  QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR---LHAR 72

Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQW-FEVLEGKQGNSLPA--------LELMGLGRLAKE 134
             ++ ++    A+    TV DN+ +   VL  ++  +  A        LE++ L  LA  
Sbjct: 73  DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR 132

Query: 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
               LS GQ++R+ LAR LA++  I LLDEP  ALD
Sbjct: 133 YPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168

Length = 353

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 79.3 bits (196), Expect = 7e-18
 Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 30/179 (16%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
            +N+S     +++L  V++ +  G  L + G NG+GKST L+ L+G   P +GE+  NG 
Sbjct: 4   AENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGV 63

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEK-------FTVLDNVQWFEVLEGKQGNSLP---- 121
            +               L+   AV  +       FTV + VQ    +  + G        
Sbjct: 64  PLNS--------WPPEELARHRAVLPQNSSLAFPFTVQEVVQ-MGRIPHRSGREPEEDER 114

Query: 122 ----ALELMGLGRLAKEKARMLSMGQRKRLQLARLLA------IDRPIWLLDEPSVALD 170
               AL    L  LA    R LS G+++R+QLAR+LA             LDEP+ ALD
Sbjct: 115 IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173

Length = 259

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 79.9 bits (197), Expect = 7e-18
 Identities = 61/190 (32%), Positives = 98/190 (51%), Gaps = 30/190 (15%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH--DITQSGIFHQY 83
           L+ +NI+I  G    + G NG+GKST  + L G  KPS+G IL++G   D ++ G+    
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGL---- 77

Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWF------EVLEGKQGNSLP----------ALELMG 127
                 + L+++V   F   DN Q F      +V  G     LP          AL+  G
Sbjct: 78  ------MKLRESVGMVFQDPDN-QLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG 130

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           +  L  +    LS GQ+KR+ +A +L ++  + +LDEP+  LD  GV  +  ++ E +K+
Sbjct: 131 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE 190

Query: 188 GGI-VIVATH 196
            G+ +I+ATH
Sbjct: 191 LGLTIIIATH 200

Length = 283

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score = 78.9 bits (195), Expect = 7e-18
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L++V++ +  G   V+ G  GSGKS  L  +AGF KP +G+IL NG DIT        K 
Sbjct: 15  LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN---LPPEKR 71

Query: 86  QLNWLSLKDAVKEKFTVLDNVQW-----FEVLEGKQGNSLPALELMGLGRLAKEKARMLS 140
            ++++    A+    TV  N+ +         +  +   L   E++G+  L   K   LS
Sbjct: 72  DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLS 131

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE----HRKKGGIVIVATH 196
            G+++R+ +AR L ++  I LLDEP  ALD   VR  E +  E     ++ G  V+  TH
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALD---VRTKEKLREELKKIRKEFGVTVLHVTH 188

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 79.7 bits (197), Expect = 9e-18
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 23/184 (12%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--------QS 77
           +  VN  + +G      G NG+GK+T +RML    +P++G     G+D+           
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSI 68

Query: 78  GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLA 132
           GI  QY           +V E  T  +N++    L G      +  +   LEL  LG  A
Sbjct: 69  GIVPQYA----------SVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA 118

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
                  S G R+RL +A  L     +  LDEP+  LD    R +   I   +++G  ++
Sbjct: 119 DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178

Query: 193 VATH 196
           + TH
Sbjct: 179 LTTH 182

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 78.5 bits (194), Expect = 1e-17
 Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 20/164 (12%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG- 78
           + A   L +V++ I  G  L + G +GSGKST  R+LAG  KPS+G IL +G  +     
Sbjct: 17  KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR 76

Query: 79  ----------IFHQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG 127
                     +F      LN   ++   + E             L   Q      L+ +G
Sbjct: 77  AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG-------LSKSQQRIAELLDQVG 129

Query: 128 LG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L       +   LS GQR+R+ +AR L  +  + +LDEP+ ALD
Sbjct: 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALD 173

Length = 252

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 77.8 bits (192), Expect = 2e-17
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           +R V+  +  G    L G NG+GK+T ++ML    KP++G     GHD+ +     + + 
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR--EVRR 73

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEKARMLS 140
           ++  +    +V ++ T  +N+     L G  G          L+ +GL   A    +  S
Sbjct: 74  RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYS 133

Query: 141 MGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVR--LLEYIIAEHRKKGGIVIVATH 196
            G R+RL++AR L + RP +  LDEP++ LD    R  + EYI     + G  +++ TH
Sbjct: 134 GGMRRRLEIARSL-VHRPEVLFLDEPTIGLD-PQTRAHVWEYIEKLKEEFGMTILLTTH 190

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 77.7 bits (192), Expect = 2e-17
 Identities = 59/209 (28%), Positives = 100/209 (47%), Gaps = 23/209 (11%)

Query: 13  LKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
            +NV+      +  + ++N+ I  G  LVL G +GSGK+T ++M+    +P++GEI  +G
Sbjct: 3   FENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDG 62

Query: 72  HDITQSGIFHQYKLQLNWLSLKDAVKE-----KFTVLDNVQWFEVLEG-----KQGNSLP 121
            DI +     Q  ++L    +   +++       TV +N+     L        +  +  
Sbjct: 63  EDIRE-----QDPVELR-RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116

Query: 122 ALELMGL--GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLE 178
            L L+GL     A      LS GQ++R+ +AR LA D P+ L+DEP  ALD     +L E
Sbjct: 117 LLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQE 176

Query: 179 YIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
                 ++ G  ++  TH    I++A  L
Sbjct: 177 EFKRLQQELGKTIVFVTH---DIDEAFRL 202

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 77.1 bits (190), Expect = 4e-17
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 21/167 (12%)

Query: 32  SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
           SI +   + + G NG GK+TF++MLAG  KP  G+I      ++       YK Q     
Sbjct: 21  SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-------YKPQ----- 68

Query: 92  LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM---GLGRLAKEKARMLSMGQRKRLQ 148
               +K  +          + +    +     E+     + ++   +   LS G+ +R+ 
Sbjct: 69  ---YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVA 125

Query: 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYII---AEHRKKGGIVI 192
           +A  L+ D  I+LLDEPS  LD +   +   +I   AE+ +K   V+
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVV 172

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 77.2 bits (191), Expect = 4e-17
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 42/200 (21%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDIT------ 75
           +IL+ VN+++ +G    + G NGSGKST    + G    + + GEIL++G DI       
Sbjct: 18  EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77

Query: 76  --QSGIF--HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
             ++GIF   QY +++  ++  D ++                      LP        + 
Sbjct: 78  RARAGIFLAFQYPVEIPGVTNSDFLRAAMNA----------RRGARGILPEFI-----KE 122

Query: 132 AKEKARMLSM---------------GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
            KEKA +L +               G++KR ++ +LL ++  + +LDEP   LD D +++
Sbjct: 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182

Query: 177 LEYIIAEHRKKGGIVIVATH 196
           +   I   R++G  V++ TH
Sbjct: 183 VAEGINALREEGRGVLIITH 202

Length = 251

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 76.4 bits (188), Expect = 4e-17
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 16/150 (10%)

Query: 30  NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW 89
           ++++ DG  + + G +G+GKST L ++AGF +P++G I  N    T       Y+  ++ 
Sbjct: 18  DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---PYQRPVSM 74

Query: 90  LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---------MGLGRLAKEKARMLS 140
           L  ++ +    TV  N+     L    G  L A +          +G+          LS
Sbjct: 75  LFQENNLFAHLTVRQNIG----LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLS 130

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            GQR+R+ LAR L    PI LLDEP  ALD
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALD 160

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score = 78.8 bits (195), Expect = 7e-17
 Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 32/224 (14%)

Query: 13  LKNVSCMRNAQQI--LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            +NVS     Q+   L +V+++I  G  + + G  GSGKST L++L G  +P+ G +L +
Sbjct: 466 FRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525

Query: 71  GHDITQ---SGIFHQ--YKLQLNWL---SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA 122
           G DI Q   + +     Y  Q   L   +L+D +       D+ +     E         
Sbjct: 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVR 585

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYII 181
               GL     E+ R LS GQR+ + LAR L  D PI LLDEP+ A+D     R  + + 
Sbjct: 586 RHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645

Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLDR 225
                K   +++ TH                   R +L+D++DR
Sbjct: 646 RWLAGK--TLVLVTH-------------------RTSLLDLVDR 668

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 77.6 bits (191), Expect = 1e-16
 Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 18/155 (11%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
            +++I  G   V+ G +GSGKST +RML    +P+AG+I  +G +I +     Q  ++L 
Sbjct: 12  ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMK-----QSPVELR 66

Query: 89  WLSLKD--AVKEKF------TVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEK 135
            +  K    V ++F      T+L N      L G     ++  +L  L+L+GL       
Sbjct: 67  EVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY 126

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
              LS G ++R+ LAR LA +  I L+DE   ALD
Sbjct: 127 PDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 75.7 bits (187), Expect = 1e-16
 Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 34/207 (16%)

Query: 13  LKNVSCM----RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           LKNVS +          L+ V++S+  G    + G +G+GKST +R + G  +P++G +L
Sbjct: 4   LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVL 63

Query: 69  WNGHDITQSG-------------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK 115
            +G D+T                IF  +    N LS +       TV +NV     + G 
Sbjct: 64  VDGTDLTLLSGKELRKARRRIGMIFQHF----NLLSSR-------TVFENVALPLEIAGV 112

Query: 116 QGNSLPA-----LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
               +       LEL+GL   A      LS GQ++R+ +AR LA +  + L DE + ALD
Sbjct: 113 PKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD 172

Query: 171 YDGVR-LLEYIIAEHRKKGGIVIVATH 196
            +  + +L  +   +R+ G  +++ TH
Sbjct: 173 PETTQSILALLRDINRELGLTIVLITH 199

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 75.5 bits (186), Expect = 2e-16
 Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 9/186 (4%)

Query: 18  CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS 77
             ++  + L+ +++SI +G    L G NG+GKST L  L G   P  G +   G ++   
Sbjct: 13  RYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE 72

Query: 78  GIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSL-----PALELMGLGR 130
               ++      L  +D   + F  TV D+V +  V  G   + +      AL+ + +  
Sbjct: 73  NE--KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWD 130

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
              +    LS GQ+KR+ +A +LA+D  + +LDEP   LD  G   L  I+     +G  
Sbjct: 131 FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT 190

Query: 191 VIVATH 196
           VIVATH
Sbjct: 191 VIVATH 196

Length = 274

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 63/232 (27%), Positives = 104/232 (44%), Gaps = 39/232 (16%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L + ++      +  L  +N+++  G  LV+ G +G GK+T L ++AGF     G I  +
Sbjct: 2   LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61

Query: 71  GHDIT----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLP 121
           G  +     + G+  Q +  L W +          V DNV +   L G     +   +  
Sbjct: 62  GKPVEGPGAERGVVFQNEGLLPWRN----------VQDNVAFGLQLAGVEKMQRLEIAHQ 111

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYI 180
            L+ +GL    K     LS GQR+R+ +AR LA +  + LLDEP  ALD +   ++   +
Sbjct: 112 MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLL 171

Query: 181 IAEHRKKGGIVIVATHLPIQIEDAMNL----------------RLPPRFPRR 216
           +   ++ G  V++ TH    IE+A+ +                RLP  F RR
Sbjct: 172 LKLWQETGKQVLLITH---DIEEAVFMATELVLLSPGPGRVVERLPLNFARR 220

Length = 255

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 74.5 bits (184), Expect = 3e-16
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 18/166 (10%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG- 78
             + + L  V+ SI  G  L L G +GSGKST  R + G  KP++G I+++G D+ +   
Sbjct: 15  GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSR 74

Query: 79  ------------IFHQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL 125
                       +F      LN  +++ + + E   +   +      E ++   L  L  
Sbjct: 75  RLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL---SKKEARKEAVLLLLVG 131

Query: 126 MGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +GL   +       LS GQR+R+ +AR LA++  + + DEP+ ALD
Sbjct: 132 VGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 76.4 bits (189), Expect = 3e-16
 Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           + L  V++++  G    L G NG+GKST +++L+G   P +GEIL +G  +  S      
Sbjct: 22  KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDAL 81

Query: 79  -----IFHQYKLQLNWLS------LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG 127
                  HQ    +  LS      L      +F ++D              +   L  +G
Sbjct: 82  AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR-------ARELLARLG 134

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           L          LS+ QR+ +++AR L+ D  + +LDEP+ AL       L  +I   + +
Sbjct: 135 LDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194

Query: 188 G-GIVIVATH 196
           G  I+ + +H
Sbjct: 195 GVAIIYI-SH 203

Length = 500

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 61/196 (31%), Positives = 93/196 (47%), Gaps = 14/196 (7%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEIL 68
           + + ++     A  +L  +++ I  G  L L G +G GK+T LR +AGF K +   G I 
Sbjct: 6   IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIA 65

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL------PA 122
               D+T +     +K  L  L    A+     V DNV  F +   K   +        A
Sbjct: 66  IADRDLTHAP---PHKRGLALLFQNYALFPHLKVEDNVA-FGLRAQKMPKADIAERVADA 121

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYII 181
           L+L+GLG  A      LS G ++R+ +AR +AI+  + LLDEP  ALD +    + E I 
Sbjct: 122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181

Query: 182 AEHRKKGGIVIV-ATH 196
           A H +   + I+  TH
Sbjct: 182 ALHEELPELTILCVTH 197

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 31/214 (14%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA-- 64
           P + +++++     +  L+ +N+ I       L G +G GKST LR L   +   P A  
Sbjct: 6   PAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65

Query: 65  -GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGK 115
            GE+L +G +I        Y  +++ + L+  V   F        ++ DNV +   L G 
Sbjct: 66  EGEVLLDGKNI--------YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117

Query: 116 QGNSLP-----ALELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
           +   L      +L+   L    K++    A  LS GQ++RL +AR LA+   + L+DEP+
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPT 177

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ 200
            ALD      +E +I E +KK  IVIV TH   Q
Sbjct: 178 SALDPISTLKIEELITELKKKYTIVIV-THNMQQ 210

Length = 253

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 74.3 bits (183), Expect = 4e-16
 Identities = 55/195 (28%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L  +N++     ++IL  +++S+  G    L G NG GKST L+  A    P +G +   
Sbjct: 3   LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ---------WFEVLEGKQGNSLP 121
              I+      Q   +L  L       E  TV + V          W  +          
Sbjct: 63  DKPISMLSS-RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ 121

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           A+E   +  LA  +   LS GQR+R  LA +LA D P+ LLDEP+  LD +    L  ++
Sbjct: 122 AMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLM 181

Query: 182 AEHRKKGGIVIVATH 196
            E   +G  V+   H
Sbjct: 182 RELNTQGKTVVTVLH 196

Length = 255

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 73.7 bits (182), Expect = 7e-16
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 29/161 (18%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--------QS 77
           L  +++ +  G   V+ G NG+GK+T + ++ G ++P  G +L+ G D+T        ++
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77

Query: 78  GIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------QWFEVLEGKQGNSLPA-----LE 124
           GI    K Q      K  V E  TV +N+          F  L  +            LE
Sbjct: 78  GIGR--KFQ------KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
            +GL   A   A +LS GQ++ L++  LL  D  + LLDEP
Sbjct: 130 TIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEP 170

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 41/193 (21%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
           QIL  V++++ +G  + L G NG+GK+T L+ + G   P +G I ++G DIT        
Sbjct: 14  QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERA 73

Query: 76  QSGI---------FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM 126
           ++GI         F +                  TV +N+        +       LE +
Sbjct: 74  RAGIGYVPEGRRIFPE-----------------LTVEENLLLGAYARRRAKRK-ARLERV 115

Query: 127 -----GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
                 L    K+ A  LS G+++ L +AR L     + LLDEPS  L    V  +   I
Sbjct: 116 YELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAI 175

Query: 182 AEHRKKG-GIVIV 193
            E R +G  I++V
Sbjct: 176 RELRDEGVTILLV 188

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 16/203 (7%)

Query: 6   PPLPRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA 64
              P L L+++S     A  +L  V++ +  G  + + G +GSGKST L  LAG   P  
Sbjct: 330 LGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQ 389

Query: 65  GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV----------QWFEVLEG 114
           GE+  +G  ++        +     +  +DA     TV +N+          + +  LE 
Sbjct: 390 GEVTLDGVPVSSLDQDEVRRRVS--VCAQDAHLFDTTVRENLRLARPDATDEELWAALER 447

Query: 115 KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-G 173
                       GL  +  E    LS G+R+RL LAR L  D PI LLDEP+  LD +  
Sbjct: 448 VGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETA 507

Query: 174 VRLLEYIIAEHRKKGGIVIVATH 196
             LLE ++A    +   V++ TH
Sbjct: 508 DELLEDLLAALSGRT--VVLITH 528

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 75.2 bits (185), Expect = 1e-15
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 21/161 (13%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL  ++++I       + G +GSGKST  ++L GF +  +GEIL NG  +      H  +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR-HTLR 547

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS----LPALEL-----------MGLG 129
             +N+L  ++      ++L+N+    +L  K+  S      A E+           +G  
Sbjct: 548 QFINYLP-QEPYIFSGSILENL----LLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQ 602

Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
               E+   +S GQ++R+ LAR L  D  + +LDE +  LD
Sbjct: 603 TELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 50/211 (23%), Positives = 100/211 (47%), Gaps = 34/211 (16%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEIL 68
           L +K++      ++IL+ VN+++  G    + G NGSGKST  + +AG    + ++G IL
Sbjct: 1   LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTIL 60

Query: 69  WNGHDITQ--------SGIF--HQYKLQLNWLSLKD-------AVKEKF--TVLDNVQWF 109
           + G D+ +        +G+F   QY  ++  +S  +       A +       LD + + 
Sbjct: 61  FKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL 120

Query: 110 EVLEGKQGNSLPALELMGLGRLAKEKARML----SMGQRKRLQLARLLAIDRPIWLLDEP 165
           ++L+ K       L L+G+        R +    S G++KR ++ ++  ++  + +LDE 
Sbjct: 121 KLLKAK-------LALLGMDEEFLN--RSVNEGFSGGEKKRNEILQMALLEPKLAILDEI 171

Query: 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
              LD D ++++   I   R+     ++ TH
Sbjct: 172 DSGLDIDALKIVAEGINRLREPDRSFLIITH 202

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 43/200 (21%), Positives = 80/200 (40%), Gaps = 50/200 (25%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
              V++S+  G    L G NG+GKST +++L G  +P +GEI  +G            ++
Sbjct: 20  NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG-----------KEV 68

Query: 86  QLNWLSLKDAVK-------------EKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
           ++   S +DA++                TV +N+    +L    G       L+   +  
Sbjct: 69  RIK--SPRDAIRLGIGMVHQHFMLVPTLTVAENI----IL----GLEPSKGGLIDRRQAR 118

Query: 133 KEKARM----------------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
                +                LS+G+++R+++ + L     + +LDEP+  L       
Sbjct: 119 ARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADE 178

Query: 177 LEYIIAEHRKKGGIVIVATH 196
           L  I+     +G  +I  TH
Sbjct: 179 LFEILRRLAAEGKTIIFITH 198

Length = 501

>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 54/147 (36%), Positives = 70/147 (47%), Gaps = 24/147 (16%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
           +N++I  G  L L G NGSGKST   +L G  +P +GEIL +G  +T             
Sbjct: 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPED------- 394

Query: 89  WLSLKDAVKEKFTVLDNVQWFEVLEGKQG-NSLPALELMGLGRLA-KEKARM-------- 138
           +  L  AV   FT   +   F+ L G +G  + PAL    L RL    K  +        
Sbjct: 395 YRKLFSAV---FT---DFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNL 448

Query: 139 -LSMGQRKRLQLARLLAIDRPIWLLDE 164
            LS GQ+KRL L   LA +R I LLDE
Sbjct: 449 KLSKGQKKRLALLLALAEERDILLLDE 475

Length = 547

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 51/182 (28%), Positives = 91/182 (50%), Gaps = 17/182 (9%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD--------ITQS 77
           L+ ++ +I  G  +   G NG+GK+T L++L+G  +P++GE+   G          + + 
Sbjct: 37  LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRI 96

Query: 78  GIFHQYKLQLNW-LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL-ELMGLGRLAKEK 135
           G+    K QL W L     V + F +L  +  +++   +    L  L EL+ L  L    
Sbjct: 97  GVVFGQKTQLWWDLP----VIDSFYLLAAI--YDLPPARFKKRLDELSELLDLEELLDTP 150

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVA 194
            R LS+GQR R ++A  L  +  I  LDEP++ LD      +  ++   +R++G  V++ 
Sbjct: 151 VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT 210

Query: 195 TH 196
           +H
Sbjct: 211 SH 212

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 71.4 bits (175), Expect = 3e-15
 Identities = 63/196 (32%), Positives = 96/196 (48%), Gaps = 37/196 (18%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------- 75
           +Q L+ V   +  G    LTG +G+GKST L+++ G  +PSAG+I ++GHDIT       
Sbjct: 15  RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV 74

Query: 76  -----QSG-IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALE 124
                Q G IF  + L ++            TV DNV    ++ G  G+ +      AL+
Sbjct: 75  PFLRRQIGMIFQDHHLLMDR-----------TVYDNVAIPLIIAGASGDDIRRRVSAALD 123

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD----YDGVRLLEYI 180
            +GL   AK     LS G+++R+ +AR +     + L DEP+  LD       +RL E  
Sbjct: 124 KVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE-- 181

Query: 181 IAEHRKKGGIVIVATH 196
             E  + G  V++ATH
Sbjct: 182 --EFNRVGVTVLMATH 195

Length = 222

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 21/167 (12%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           LLL  VS     + +L  +++ I  G  + + G +G GKST LR+LAG   PSAGE+L  
Sbjct: 13  LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72

Query: 71  GHDITQSG-----IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-QGNSLPALE 124
              + ++      +F   +L L W            V+DNV     L+G+ +  +L AL 
Sbjct: 73  TAPLAEAREDTRLMFQDARL-LPWKK----------VIDNVGLG--LKGQWRDAALQALA 119

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALD 170
            +GL   A E    LS GQ++R+ LAR L I RP + LLDEP  ALD
Sbjct: 120 AVGLADRANEWPAALSGGQKQRVALARAL-IHRPGLLLLDEPLGALD 165

Length = 257

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 39/200 (19%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R    IL+ ++++I  G  + L G++G GKST + +L  F  P++GEIL +G DI     
Sbjct: 13  RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRD--- 69

Query: 80  FHQYKLQLNWLSLKDAVKEK----F--TVLDNVQW-------FEVLEG-KQGN------S 119
                L L WL  +  +  +    F  T+ +N+++        EV E  K+ N      S
Sbjct: 70  -----LNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMS 124

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
           LP     G   L  E+   LS GQ++R+ +AR L  +  I LLDE + ALD +     E 
Sbjct: 125 LPD----GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES----EK 176

Query: 180 IIAE---HRKKGGIVIVATH 196
           ++ E      KG   IV  H
Sbjct: 177 LVQEALDRAMKGRTTIVIAH 196

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 71.5 bits (176), Expect = 5e-15
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 34/147 (23%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            +  V+ SI +G  L L G +G GKST  R++ G  +P++GEIL+ G DIT        K
Sbjct: 28  AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT--------K 79

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK-ARMLSMGQ 143
           L       K+  +E+           VLE         LE +GL      +    LS GQ
Sbjct: 80  L------SKEERRER-----------VLE--------LLEKVGLPEEFLYRYPHELSGGQ 114

Query: 144 RKRLQLARLLAIDRPIWLLDEPSVALD 170
           R+R+ +AR LA++  + + DEP  ALD
Sbjct: 115 RQRIGIARALALNPKLIVADEPVSALD 141

Length = 268

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 32/192 (16%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L +VNI I DG  + L G  GSGKST ++ L G  KP++G+I+ +G DIT   +      
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV------ 76

Query: 86  QLNWLSLKDAVKEKFTVLD--NVQWFE------VLEGKQGNSLP----------ALELMG 127
                 L D  K+   V      Q FE      +  G     L           A+ ++G
Sbjct: 77  -----KLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVG 131

Query: 128 LGR-LAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV-RLLEYIIAEH 184
           L     K+K+   LS GQ++R+ +A ++A++  I +LDEP+  LD  G   +L  I   H
Sbjct: 132 LDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELH 191

Query: 185 RKKGGIVIVATH 196
           ++    +I+ +H
Sbjct: 192 KEYNMTIILVSH 203

Length = 287

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 70.6 bits (174), Expect = 6e-15
 Identities = 51/193 (26%), Positives = 88/193 (45%), Gaps = 17/193 (8%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L + N++       ILR V++ +  G    + G NG GK+T L+ L G     +G I  +
Sbjct: 1   LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLD 60

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS----------L 120
           G DIT+     + +  + ++     +  + TV +N+     L      S           
Sbjct: 61  GEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLL--TGLAALPRRSRKIPDEIYELF 118

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
           P L+ M LGR    +   LS GQ+++L +AR L     + LLDEP+  +    ++ +  +
Sbjct: 119 PVLKEM-LGR----RGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRV 173

Query: 181 IAEHRKKGGIVIV 193
           I   R +GG+ I+
Sbjct: 174 IRRLRAEGGMAIL 186

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 34/197 (17%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEILWNGHDITQSG 78
           Q L+ +N+ I +     L G +G GKSTFLR L   +   PS    GE+L +G DI    
Sbjct: 17  QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI---- 72

Query: 79  IFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG----KQGNSLPALELM 126
               YK  ++   L+  V   F        ++ DNV +     G    K+ + +    L 
Sbjct: 73  ----YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLK 128

Query: 127 GLG-------RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
           G         RL K+ A  LS GQ++RL +AR LA++  + L+DEP+ ALD      +E 
Sbjct: 129 GAALWDEVKDRL-KKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEE 187

Query: 180 IIAEHRKKGGIVIVATH 196
           +I E +K   IVIV TH
Sbjct: 188 LIQELKKDYTIVIV-TH 203

Length = 250

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 36/210 (17%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P + + ++S       +L  V++S+ +G  + L G NG+GK+T LR + G   P+AG +L
Sbjct: 2   PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV-LDNVQWFE-----VLE-------GK 115
             G D+               LS + A +   +V  D    FE     V+E        +
Sbjct: 62  VAGDDVEA-------------LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSR 108

Query: 116 QGNSLPA--------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
                          +E  G+ + A      LS G+R+R+ LAR LA   P+ LLDEP+ 
Sbjct: 109 FDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168

Query: 168 ALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
           +LD +  VR LE ++      G   + A H
Sbjct: 169 SLDINHQVRTLE-LVRRLVDDGKTAVAAIH 197

Length = 402

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 68/222 (30%), Positives = 104/222 (46%), Gaps = 52/222 (23%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----A 64
           P L +KN+    N  +IL+ +N+SI+ G    + G NGSGKST  +++AG   P+     
Sbjct: 6   PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILE 63

Query: 65  GEILWNGHDIT--------QSGIF--HQYKLQLNWLSLKDAV------KEKF---TVLDN 105
           G+IL+ G  I           GIF   QY +++  +S  D +      K KF     LD 
Sbjct: 64  GDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP 123

Query: 106 VQWFEVLEGKQGNSLPALELMG-----LGRLAKEKARMLSMGQRKR---LQLARL---LA 154
           +++ E++  K       L+L+G     L R   E     S G++KR   LQ+A L   LA
Sbjct: 124 LEFLEIINEK-------LKLVGMDPSFLSRNVNEG---FSGGEKKRNEILQMALLDSELA 173

Query: 155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           I      LDE    LD D ++++   I +       +I+ TH
Sbjct: 174 I------LDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209

Length = 252

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 50/162 (30%), Positives = 78/162 (48%), Gaps = 30/162 (18%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---------HDITQ 76
           L  ++ S+  G   VL G NG+GK+T + ++ G ++P  GE+L++G         H I +
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80

Query: 77  SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ--------WFEVLEGK----QGNSLP-AL 123
           +GI    K Q      K  V E  TV +N++         F  L  +    +   +   L
Sbjct: 81  AGIGR--KFQ------KPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELL 132

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
             +GLG      A +LS GQ++ L++  LLA D  + LLDEP
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEP 174

Length = 249

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 70.4 bits (172), Expect = 2e-14
 Identities = 61/195 (31%), Positives = 104/195 (53%), Gaps = 23/195 (11%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------- 75
            ++L+ V++  + G  + + G++GSGKSTFLR +    KPS G I+ NG  I        
Sbjct: 18  HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDG 77

Query: 76  QSGIFHQYKLQLNWLSLKDAVKEKF------TVLDNVQW--FEVL-----EGKQGNSLPA 122
           Q  +  + +L+L    L   V + F      TVL+NV     +VL     E ++  ++  
Sbjct: 78  QLKVADKNQLRLLRTRLT-MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-RAVKY 135

Query: 123 LELMGLGRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           L  +G+   A+ K  + LS GQ++R+ +AR LA++  + L DEP+ ALD + V  +  I+
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195

Query: 182 AEHRKKGGIVIVATH 196
            +  ++G  ++V TH
Sbjct: 196 QQLAEEGKTMVVVTH 210

Length = 257

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 26/163 (15%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------- 78
           +  V+  + +G  L L G +GSGKST  R+LAG   PS+G I+++G D+  +G       
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366

Query: 79  -----IF-HQYKLQLN-WLSLKDAVKE---KFTVLDNVQWFEVLEGKQGNSLPALELMGL 128
                +F   Y   LN  +++ D + E           +    +          LEL+GL
Sbjct: 367 RRIQMVFQDPYS-SLNPRMTVGDILAEPLRIHGGGSGAERRARVAE-------LLELVGL 418

Query: 129 GR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                      LS GQR+R+ +AR LA++  + +LDEP  ALD
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461

Length = 539

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 71.7 bits (176), Expect = 2e-14
 Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 22/194 (11%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  +++ I  G  + L G +GSGKST + ++  F +P +G+IL +GHD+        Y L
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL------ADYTL 401

Query: 86  Q--LNWLSL--KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL-----------MGLGR 130
                 ++L  +D V    T+ +N+ +    +  +     AL             +GL  
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDT 461

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
              E   +LS GQR+RL +AR L  D PI +LDE + ALD +  RL++  + E   +G  
Sbjct: 462 PIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAAL-ERLMQGRT 520

Query: 191 VIVATHLPIQIEDA 204
            +V  H    IE A
Sbjct: 521 TLVIAHRLSTIEKA 534

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 71.5 bits (176), Expect = 2e-14
 Identities = 60/193 (31%), Positives = 88/193 (45%), Gaps = 30/193 (15%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGI 79
           IL+ ++ ++  G AL + G +GSGKST  R+L G   P++G +  +G D+      Q G 
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE-------VLEGKQGN-------SLPALEL 125
              Y  Q   + L D      T+ +N+  F        V+E  +          LP    
Sbjct: 411 HIGYLPQD--VELFDG-----TIAENIARFGEEADPEKVIEAARLAGVHELILRLP---- 459

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
            G      E    LS GQR+R+ LAR L  D  + +LDEP+  LD +G   L   I   +
Sbjct: 460 QGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519

Query: 186 KKGGIVIVATHLP 198
            +GG V+V  H P
Sbjct: 520 ARGGTVVVIAHRP 532

Length = 580

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 69.4 bits (170), Expect = 2e-14
 Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 40/217 (18%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------ 78
           IL+ V + +  G  + + G +GSGKST L +LAG   PS+GE+   G  + +        
Sbjct: 25  ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84

Query: 79  --------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALEL 125
                   +F  + L  N            T L+NV     L G+     +  +   LE 
Sbjct: 85  LRARHVGFVFQSFHLIPN-----------LTALENVALPLELRGESSADSRAGAKALLEA 133

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEH 184
           +GLG+        LS G+++R+ LAR  A    +   DEP+  LD   G ++ + + A +
Sbjct: 134 VGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN 193

Query: 185 RKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
           R++G  +++ TH P         +L  R  R++ L  
Sbjct: 194 RERGTTLVLVTHDP---------QLAARCDRQLRLRS 221

Length = 228

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 56/206 (27%), Positives = 105/206 (50%), Gaps = 18/206 (8%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +L +V+ SI +G  + + G++GSGKST L +L G   P++G++++NG  +++     + +
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83

Query: 85  L---QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKA 136
           L   +L ++     +   FT L+NV    ++  K        +L  L  +GL   A  + 
Sbjct: 84  LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP 143

Query: 137 RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVAT 195
             LS G+R+R+ +AR L  +  + L DEP+  LD  +   + + +   +R +G   +V T
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203

Query: 196 HLPIQIEDAMNLRLPPRFPRRMTLVD 221
           H         +L+L  R  R++ + D
Sbjct: 204 H---------DLQLAKRMSRQLEMRD 220

Length = 233

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 60/198 (30%), Positives = 95/198 (47%), Gaps = 29/198 (14%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +LR +++ I  G  + L G +GSGKST + ++  F    +G IL +GHD+        Y 
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVR------DYT 70

Query: 85  LQLNWLSLKDAV----KEKF----TVLDNVQW-------FEVLEG-KQGNSLPALELM-- 126
           L     SL+  +    ++ F    TV +N+ +        EV E  +  N+   +  +  
Sbjct: 71  LA----SLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPE 126

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
           G   +  E+   LS GQR+R+ +AR L  D PI +LDE + ALD +  RL++  + E   
Sbjct: 127 GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLM 185

Query: 187 KGGIVIVATHLPIQIEDA 204
           K     V  H    IE+A
Sbjct: 186 KNRTTFVIAHRLSTIENA 203

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score = 68.8 bits (169), Expect = 3e-14
 Identities = 49/202 (24%), Positives = 95/202 (47%), Gaps = 14/202 (6%)

Query: 14  KNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           +NV+      + +L+ +N SI  G  + + G  G+GK+T + +L  F  P  G+IL +G 
Sbjct: 6   ENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGI 65

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF--------EVLEGKQGNSLPALE 124
           DI    I  +    +  + L+D      T+++N++           +   K+  +   + 
Sbjct: 66  DI--RDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIM 123

Query: 125 LM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
            +  G   +  E    LS G+R+ L +AR +  D  I +LDE +  +D +  +L++  + 
Sbjct: 124 KLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183

Query: 183 EHRKKGGIVIVATHLPIQIEDA 204
           +  K    +I+A  L   I++A
Sbjct: 184 KLMKGRTSIIIAHRLST-IKNA 204

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 18/157 (11%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL---WNGH-DITQSGIFHQYK 84
            ++ I +G   VL G +GSGKST LR + G +  S G +L    +G  D+         +
Sbjct: 43  ASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRR 102

Query: 85  LQLNWLSLKDAVKEKF------TVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAK 133
           L+ + +S+   V ++F      TV +NV +   ++G     ++      LEL+GL + A 
Sbjct: 103 LRTHRVSM---VFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWAD 159

Query: 134 EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            K   LS G ++R+ LAR  A + PI L+DEP  ALD
Sbjct: 160 RKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 63/208 (30%), Positives = 98/208 (47%), Gaps = 36/208 (17%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRML-------AGFSKPSAGE 66
           +N++     ++ L+++N+ I       L G +G GKST LR L        G      G+
Sbjct: 5   ENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR--IEGK 62

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG-KQG 117
           +L++G DI    I        + + L+  V   F        ++ DN+ +   L G K  
Sbjct: 63  VLFDGQDIYDKKI--------DVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDK 114

Query: 118 NSL-----PALELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
             L      +L+   L    K++    A  LS GQ++RL +AR LA++  + LLDEP+ A
Sbjct: 115 KELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSA 174

Query: 169 LDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           LD      +E +I E +KK  IVIV TH
Sbjct: 175 LDPIATGKIEELIQELKKKYTIVIV-TH 201

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 69.4 bits (170), Expect = 4e-14
 Identities = 52/184 (28%), Positives = 88/184 (47%), Gaps = 6/184 (3%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           Q  L  V+     G  +   G NG+GKST ++++ G+  P +G +   G D+ Q+    Q
Sbjct: 15  QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQ 74

Query: 83  ----YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM 138
               Y  + N L L   V+E    +  +   +    KQ      +EL+GL     +K   
Sbjct: 75  RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-RVEEMIELVGLRPEQHKKIGQ 133

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198
           LS G R+R+ LA+ L  D  + +LDEP+  LD + +  +  +I     K   +I++TH+ 
Sbjct: 134 LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN-IGKDKTIILSTHIM 192

Query: 199 IQIE 202
            ++E
Sbjct: 193 QEVE 196

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 68.9 bits (168), Expect = 5e-14
 Identities = 57/208 (27%), Positives = 91/208 (43%), Gaps = 46/208 (22%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF---SKPSAGEILWNGHDITQS 77
           N  Q L  V+++IH G  + L G +GSGKST LR L+G     K +   I   G  + + 
Sbjct: 15  NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE 74

Query: 78  G---------------IFHQYKLQLNWLSLKDAVKEKFTVLDNV---------------Q 107
           G               IF Q+ L             + +VL+NV                
Sbjct: 75  GRLARDIRKSRANTGYIFQQFNLV-----------NRLSVLENVLIGALGSTPFWRTCFS 123

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
           WF   + ++  +L AL  +G+   A ++   LS GQ++R+ +AR L     + L DEP  
Sbjct: 124 WFTREQKQR--ALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIA 181

Query: 168 ALDYDGVRLLEYIIAEHRKKGGIVIVAT 195
           +LD +  R++   + +  +  GI +V T
Sbjct: 182 SLDPESARIVMDTLRDINQNDGITVVVT 209

Length = 262

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 50/189 (26%), Positives = 92/189 (48%), Gaps = 14/189 (7%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R    +L+ V+ ++H G    L G +GSGKST + +L  F +P  G++L +G  I+Q   
Sbjct: 24  RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYE- 82

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQW-------FEVLEGKQG----NSLPALELMGL 128
            H+Y      L  ++ V    ++ DN+ +         V E  Q     + +  L   G 
Sbjct: 83  -HKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-GY 140

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
                EK   LS GQ++R+ +AR L  +  + +LDE + ALD +  + ++  + +  ++ 
Sbjct: 141 DTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERR 200

Query: 189 GIVIVATHL 197
            ++++A  L
Sbjct: 201 TVLVIAHRL 209

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.0 bits (166), Expect = 8e-14
 Identities = 63/202 (31%), Positives = 95/202 (47%), Gaps = 36/202 (17%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG----FSKPS-AGEILWNGHDITQSG 78
           ++L  VN+ I D     L G +GSGKST LR+       + +   +GE+  +G DI    
Sbjct: 17  EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDI---- 72

Query: 79  IFHQYKLQLNWLSLKDAVKEKFTV---LDNVQWFE-VLEGKQGNSL--PALELMGLGRLA 132
                  +++ + L+  V+  F +   + N+  FE V  G + N L     EL    R A
Sbjct: 73  ------FKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWA 126

Query: 133 KEKARM--------------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
            EKA++              LS GQ++RL +AR LA    + L DEP+  LD +    +E
Sbjct: 127 LEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186

Query: 179 YIIAEHRKKGGIVIVATHLPIQ 200
            +  E +K   IV+V TH P Q
Sbjct: 187 SLFLELKKDMTIVLV-THFPQQ 207

Length = 250

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 62/214 (28%), Positives = 106/214 (49%), Gaps = 16/214 (7%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P L L+NV  +    +IL +++ S+  G   ++TG +G GKST L+++A    P++G +L
Sbjct: 6   PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSLPALELM 126
           + G DI+       Y+ Q+++ +    +   F  TV DN+ +   +  +Q +  PA+ L 
Sbjct: 66  FEGEDISTLKP-EIYRQQVSYCAQTPTL---FGDTVYDNLIFPWQIRNQQPD--PAIFLD 119

Query: 127 GLGRLA------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
            L R A       +    LS G+++R+ L R L     + LLDE + ALD      +  I
Sbjct: 120 DLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEI 179

Query: 181 IAEHRKKGGI-VIVATHLPIQIEDAMN-LRLPPR 212
           I  + ++  I V+  TH   +I  A   + L P 
Sbjct: 180 IHRYVREQNIAVLWVTHDKDEINHADKVITLQPH 213

Length = 225

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 49/169 (28%), Positives = 75/169 (44%), Gaps = 7/169 (4%)

Query: 7   PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
            +  +  +NV      + ++  ++  +  G    L G NG+GK+T LRML G + P AG 
Sbjct: 4   SVAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----P 121
           I   G  +         + ++  +   D +   FTV +N+  F    G    +      P
Sbjct: 64  ISLCGEPVPSRA--RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPP 121

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            LE   L   A  K   LS G ++RL LAR L  D  + +LDEP+  LD
Sbjct: 122 LLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170

Length = 306

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 63/201 (31%), Positives = 92/201 (45%), Gaps = 36/201 (17%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           LR++N  I  G  + L G +GSGKST   +L  F     GEIL +GHD+        Y L
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL------RDYTL 412

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWF------------------EVLE--GKQGNSLPALEL 125
                SL++ V     V  NV  F                  E +E   +   ++  +  
Sbjct: 413 A----SLRNQVA---LVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINK 465

Query: 126 M--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
           M  GL  +  E   +LS GQR+R+ +AR L  D PI +LDE + ALD +  R ++  + E
Sbjct: 466 MDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525

Query: 184 HRKKGGIVIVATHLPIQIEDA 204
            +K    +++A  L   IE A
Sbjct: 526 LQKNRTSLVIAHRLS-TIEKA 545

Length = 582

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 20/209 (9%)

Query: 7   PLPR----LLLKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           PLP     L ++NV+ +     +  LR ++ S+  G AL + G +GSGKST  R++ G  
Sbjct: 309 PLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368

Query: 61  KPSAGEILWNGHDITQ-----SGIFHQYKLQLNWLSLKDAVKE---KFTVLDNVQWFEVL 112
            P++G +  +G D+ Q      G    Y  Q   L     V E   +F   +N    +++
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL-FPGTVAENIARFG--ENADPEKII 425

Query: 113 EGKQGNSLPALEL---MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169
           E  +   +  L L    G   +       LS GQR+R+ LAR L  D  + +LDEP+  L
Sbjct: 426 EAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNL 485

Query: 170 DYDGVRLLEYIIAEHRKKGGIVIVATHLP 198
           D +G + L   I   + +G  V+V TH P
Sbjct: 486 DEEGEQALANAIKALKARGITVVVITHRP 514

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 67/212 (31%), Positives = 95/212 (44%), Gaps = 32/212 (15%)

Query: 5   KPPLPRLLLKNVSC--MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62
                 L L NVS       Q +L+ +++ I  G  + L G  G GKST L++L     P
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392

Query: 63  SAGEILWNGHDITQSG----------------IFHQYKLQLNW-LSLKDAVKEKF-TVLD 104
             GEIL NG  I                    +F    L+ N  L+  +A  E    VL 
Sbjct: 393 QQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAPNASDEALIEVLQ 451

Query: 105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164
            V   ++LE  +G     L    LG    E  R LS G+++RL +AR L  D P+ LLDE
Sbjct: 452 QVGLEKLLEDDKG-----LNAW-LG----EGGRQLSGGEQRRLGIARALLHDAPLLLLDE 501

Query: 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           P+  LD +  R +  ++AEH  +   V++ TH
Sbjct: 502 PTEGLDAETERQILELLAEH-AQNKTVLMITH 532

Length = 574

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 18/194 (9%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++NVS     + +L  V++ I  GG   + G NG+GKST L M++   K  +GEI  +G 
Sbjct: 4   IENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63

Query: 73  DITQ--SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW--FEVLEGK-----QGNSLPAL 123
           ++T   S    +   +L+ L  ++ +  + TV D V +  F   +G+     +     A+
Sbjct: 64  ELTSTPSKELAK---KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAI 120

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGV---RLLEY 179
           E + L  L+      LS GQR+R  +A +LA D    LLDEP   LD    V   ++L  
Sbjct: 121 EYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180

Query: 180 IIAEHRKKGGIVIV 193
           +  E  K   IV+V
Sbjct: 181 LADELGKT--IVVV 192

Length = 252

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 15/195 (7%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           ++LKN++    +  ++ ++N++I  G  + L G +G GK+T LR++AG  KP+ G+I  +
Sbjct: 7   VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66

Query: 71  GHDITQSGI--------FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA 122
           G D+T   I        F  Y L    +SL + V     +L  V   E  +  +     A
Sbjct: 67  GEDVTHRSIQQRDICMVFQSYAL-FPHMSLGENVGYGLKML-GVPKEERKQRVK----EA 120

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
           LEL+ L          +S GQ++R+ LAR L +   + L DEP   LD +  R +   I 
Sbjct: 121 LELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180

Query: 183 EHRKKGGIV-IVATH 196
           E +++  I  +  TH
Sbjct: 181 ELQQQFNITSLYVTH 195

Length = 351

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 49/204 (24%), Positives = 95/204 (46%), Gaps = 20/204 (9%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P + +  +         L+ VN++++ G    L G NG+GKST +++L+G  +P+ G I 
Sbjct: 4   PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT 63

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN----------------VQWFEVL 112
            N  +  +       +L +  +  + +V ++ TVL+N                + W E+ 
Sbjct: 64  INNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR 123

Query: 113 EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
                     L  +GL     EK   LS+  ++ L++A+ L +D  + ++DEP+ +L   
Sbjct: 124 VRAA----MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNK 179

Query: 173 GVRLLEYIIAEHRKKGGIVIVATH 196
            V  L  I+ + RK+G  ++  +H
Sbjct: 180 EVDYLFLIMNQLRKEGTAIVYISH 203

Length = 510

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           ++  +++I +G   V+ G +GSGKST +R+L    +P+ G++L +G DI +       ++
Sbjct: 44  VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103

Query: 86  QLNWLSL---KDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKAR 137
           +   +++     A+    TVLDN  +   L G     ++  +L AL  +GL   A     
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD 163

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            LS G R+R+ LAR LAI+  I L+DE   ALD
Sbjct: 164 ELSGGMRQRVGLARALAINPDILLMDEAFSALD 196

Length = 400

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            L+ +N+ +  G  + + G  GSGKS+ L  L G  +  +G +   G  I        Y 
Sbjct: 20  TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS-IA-------YV 71

Query: 85  LQLNWLSLKDAVKEKFTVLDNV--------QWFE-VLEG----KQGNSLPALELMGLGRL 131
            Q  W+       +  T+ +N+        + +E V++          LP  +L  +G  
Sbjct: 72  SQEPWI-------QNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIG-- 122

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
             EK   LS GQ++R+ LAR +  D  I+LLD+P  A+D   G  + E  I         
Sbjct: 123 --EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKT 180

Query: 191 VIVATH 196
            I+ TH
Sbjct: 181 RILVTH 186

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-13
 Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 43/202 (21%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           RN    LR  + ++  G    L G NGSGKST  + L GF + ++G+I   G    Q+  
Sbjct: 17  RNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA-- 74

Query: 80  FHQYKLQLN---WLSLKDAVKEKFTVL-DNVQWFEVLEGKQGNSLPALELMGLGRLAKEK 135
                LQ N   ++   + V   F VL ++V    V+ G+ G+       MG  R AK++
Sbjct: 75  -----LQKNLVAYVPQSEEVDWSFPVLVEDV----VMMGRYGH-------MGWLRRAKKR 118

Query: 136 ARM---------------------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV 174
            R                      LS GQ+KR+ LAR +A    + LLDEP   +D    
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178

Query: 175 RLLEYIIAEHRKKGGIVIVATH 196
             +  ++ E R +G  ++V+TH
Sbjct: 179 ARIISLLRELRDEGKTMLVSTH 200

Length = 272

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 35/221 (15%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT---- 75
              Q +L +V++S+  G  + L G +G GKST  R+L G   PS G + W G  +     
Sbjct: 22  HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81

Query: 76  -QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELM 126
            Q   F +  +Q+ +     AV  + TV + ++  E L          +   +   L  +
Sbjct: 82  AQRKAF-RRDIQMVFQDSISAVNPRKTVREIIR--EPLRHLLSLDKAERLARASEMLRAV 138

Query: 127 GLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY----DGVRLLEYII 181
            L   +  ++   LS GQ +R+ LAR LA++  + +LDE    LD       +RLL+   
Sbjct: 139 DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLK--- 195

Query: 182 AEHRKKGGIVIV-ATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
            + +++ G   +  TH         +LRL  RF +R+ ++D
Sbjct: 196 -KLQQQFGTACLFITH---------DLRLVERFCQRVMVMD 226

Length = 268

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 66.3 bits (162), Expect = 4e-13
 Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 26/195 (13%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSG 78
           ++L+ V++  + G  + + G++GSGKSTFLR +    KPSAG I  NG +I         
Sbjct: 20  EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79

Query: 79  IFHQYKLQLNWLSLKDA-VKEKF------TVLDNVQW--FEVLEGKQGNSLPALELMGLG 129
           +    K QL  L  +   V + F      TVL+NV      VL   +  ++   E     
Sbjct: 80  LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY--- 136

Query: 130 RLAK----EKARM----LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
            LAK    EKA      LS GQ++R+ +AR LA++  + L DEP+ ALD + V  +  ++
Sbjct: 137 -LAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVM 195

Query: 182 AEHRKKGGIVIVATH 196
            +  ++G  ++V TH
Sbjct: 196 QDLAEEGRTMVVVTH 210

Length = 256

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 60/212 (28%), Positives = 99/212 (46%), Gaps = 36/212 (16%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLR-------MLAGFSKP 62
           R+ ++N++   +   IL++VN+ I       L G +G GKSTF+R       ++ GF   
Sbjct: 3   RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH- 61

Query: 63  SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG 114
             G I  +G DI        Y   ++ + L+  V   F        ++ DNV +   + G
Sbjct: 62  -EGHIYLDGVDI--------YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHG 112

Query: 115 KQG---------NSLPALELMGLGRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDE 164
           +            SL A  L    +   +K+ + LS GQ++RL +AR +A+   + L+DE
Sbjct: 113 EDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172

Query: 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           P  ALD      +E +I + ++   IVIV TH
Sbjct: 173 PCSALDPISTTKIEDLIHKLKEDYTIVIV-TH 203

Length = 250

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 28/209 (13%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG- 71
           L+NV+       I + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++     
Sbjct: 6   LRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEK 65

Query: 72  --HDITQSG-----IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP--- 121
             +D+  +      +F  Y           A+    +V +N+ +   L G +   +    
Sbjct: 66  RMNDVPPAERGVGMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEEINQRV 114

Query: 122 --ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLE 178
               E++ L  L   K + LS GQR+R+ + R L  +  ++LLDEP   LD    V++  
Sbjct: 115 NQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRI 174

Query: 179 YIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
            I   H++ G  +I  TH   Q+E AM L
Sbjct: 175 EISRLHKRLGRTMIYVTH--DQVE-AMTL 200

Length = 369

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 24/164 (14%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           + +L+ V+ +I  G  + + G +GSGKST LR+L  F   S+G IL +G DI +      
Sbjct: 14  RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIRE------ 67

Query: 83  YKLQLNWLSLKDAVKEKFTVL------DNVQW-------FEVLEG-KQGNSLPALELMGL 128
             + L+ L     V  + TVL       N+++        EV+E  K       +     
Sbjct: 68  --VTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD 125

Query: 129 GRLAK--EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           G      E+   LS G+++R+ +AR +  + PI LLDE + ALD
Sbjct: 126 GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 66.3 bits (162), Expect = 5e-13
 Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 47/216 (21%)

Query: 13  LKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           L+NVS    A      + L  VN++I DG      G  GSGKST +++L G   P+ G +
Sbjct: 5   LQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV 64

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF----------TVLDNVQWFEVLEGKQ- 116
             +   IT +      K       ++  V   F          TVL +V +     G Q 
Sbjct: 65  RVDDTLITSTSKNKDIK------QIRKKVGLVFQFPESQLFEETVLKDVAF-----GPQN 113

Query: 117 -GNSLPALELMGLGRLAKEKARM--------------LSMGQRKRLQLARLLAIDRPIWL 161
            G S    E      LA+EK  +              LS GQ +R+ +A +LA++  I +
Sbjct: 114 FGVSQEEAE-----ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILV 168

Query: 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
           LDEP+  LD  G + L  +  +  + G  +++ THL
Sbjct: 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL 204

Length = 280

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 27/203 (13%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE--ILWN 70
           L  ++C   A Q L  + +   +G  LVL G +G+GKS+ LR+L     P +G   I  N
Sbjct: 5   LNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64

Query: 71  GHDITQSG--------------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116
             D +++               +F QY L  +    ++ ++    VL        L   Q
Sbjct: 65  HFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLG-------LSKDQ 117

Query: 117 GNSLPALELMGLGRLAKEKARM---LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
             +  A +L+   RL     R    LS GQ++R+ +AR L ++  + L DEP+ ALD + 
Sbjct: 118 ALA-RAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176

Query: 174 VRLLEYIIAEHRKKGGIVIVATH 196
              +  II E  + G   ++ TH
Sbjct: 177 TAQIVSIIKELAETGITQVIVTH 199

Length = 242

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 67.3 bits (165), Expect = 5e-13
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 35/171 (20%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           +   IL  V++ I  G  + + G +GSGKST LR+L GF  P +G + ++G D+      
Sbjct: 464 DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA----- 518

Query: 81  HQYKLQLNWLSLKDAVKEKF-TVLDNVQWF--EVLEGKQGNSLPALEL------------ 125
                 L+      AV+ +   VL N +     + E   G +   L+             
Sbjct: 519 -----GLD----VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAE 569

Query: 126 ------MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                 MG+  +  E    LS GQR+RL +AR L     I L DE + ALD
Sbjct: 570 DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 31/216 (14%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ----SG 78
             +L +V++SI +G  + L G +G GKST  R+L G  KP+ G + + G D+ Q      
Sbjct: 24  APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQR 83

Query: 79  IFHQYKLQLNWLSLKDAVKEKFTV-------LDNVQWFEVLEGKQGNSLPALELMGL-GR 130
              +  +QL +     AV  + TV       L ++   +  E ++      L+++GL   
Sbjct: 84  RAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-QKARIAELLDMVGLRSE 142

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH----RK 186
            A +  R LS GQ +R+ +AR LA+   + +LDE    LD     +L+ +I E     ++
Sbjct: 143 DADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD----MVLQAVILELLRKLQQ 198

Query: 187 KGGIVIV-ATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
             G   +  TH         +LRL   F +R+ ++D
Sbjct: 199 AFGTAYLFITH---------DLRLVQSFCQRVAVMD 225

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 61/208 (29%), Positives = 90/208 (43%), Gaps = 37/208 (17%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE--ILWN 70
           L  ++C   A Q L  + +    G  LVL G +G+GKS+ LR+L     P +G   I  N
Sbjct: 5   LNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN 64

Query: 71  GHDITQSG--------------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE----VL 112
             D +++               +F QY L   W  L        TV  N+   E    VL
Sbjct: 65  HFDFSKTPSDKAIRELRRNVGMVFQQYNL---WPHL--------TVQQNL--IEAPCRVL 111

Query: 113 E-GKQGNSLPALELMGLGRLAKEKARM---LSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
              K      A +L+   RL     R    LS GQ++R+ +AR L ++  + L DEP+ A
Sbjct: 112 GLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171

Query: 169 LDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           LD +    +  II E  + G   ++ TH
Sbjct: 172 LDPEITAQIVSIIRELAETGITQVIVTH 199

Length = 242

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.7 bits (160), Expect = 7e-13
 Identities = 61/206 (29%), Positives = 97/206 (47%), Gaps = 32/206 (15%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEIL 68
           KN++     +Q L  +N+ I++     L G +G GKSTFLR L   +         GE+L
Sbjct: 8   KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL 67

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG-KQGNS 119
            +G +I        Y   ++ + L+  V   F        ++ DNV +   + G K    
Sbjct: 68  LDGKNI--------YDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKE 119

Query: 120 LPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L  +    L + A         K+ A  LS GQ++RL +AR +A+   + L+DEP+ ALD
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
                 +E ++ E +K+  IVIV TH
Sbjct: 180 PISTLKIEDLMVELKKEYTIVIV-TH 204

Length = 251

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 60/222 (27%), Positives = 98/222 (44%), Gaps = 41/222 (18%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           ++L+ +++ I+ G  + + G +GSGKST + +L    KP++G     G D+         
Sbjct: 22  EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81

Query: 79  ---------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LE 124
                    IF +Y L    LS         T   NV+   V  G +           L+
Sbjct: 82  QLRREHFGFIFQRYHL----LS-------HLTAAQNVEVPAVYAGLERKQRLLRAQELLQ 130

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAE 183
            +GL    + +   LS GQ++R+ +AR L     + L DEP+ ALD + G  ++  I+ +
Sbjct: 131 RLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMA-ILHQ 189

Query: 184 HRKKGGIVIVATHLP---------IQIEDAMNLRLPPRFPRR 216
            R +G  VI+ TH P         I+I D   +R PP   + 
Sbjct: 190 LRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231

Length = 648

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 59/199 (29%), Positives = 82/199 (41%), Gaps = 21/199 (10%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEI 67
           L LKNVS       +L +VN +I  G  + L G +G GKST L  + G         GE+
Sbjct: 3   LCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGEL 62

Query: 68  LWNGHDIT-------QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
             N   +        Q GI  Q  L    LS+   +   F +   ++       ++  + 
Sbjct: 63  WLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNL--LFALPATLKG----NARRNAAN 116

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY---DGVRLL 177
            ALE  GL     +    LS GQR R+ L R L       LLDEP   LD    D  R  
Sbjct: 117 AALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR-- 174

Query: 178 EYIIAEHRKKGGIVIVATH 196
           +++ +E R  G   +  TH
Sbjct: 175 QWVFSEVRAAGIPTVQVTH 193

Length = 213

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 66.5 bits (162), Expect = 8e-13
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 21/179 (11%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ----------SG 78
           +++ I  G  + + G NG GKST  ++  G   P  GEIL +G  ++           S 
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSA 420

Query: 79  IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM 138
           IF  + L  + L   D   E  ++ +  Q+ + LE         +++   G         
Sbjct: 421 IFADFHL-FDDLIGPDE-GEHASLDNAQQYLQRLEIAD-----KVKIEDGGF---STTTA 470

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVATH 196
           LS GQ+KRL L      DRPI L DE +   D    R   E ++ + +++G  +I+ +H
Sbjct: 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISH 529

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 65.1 bits (159), Expect = 8e-13
 Identities = 53/178 (29%), Positives = 84/178 (47%), Gaps = 33/178 (18%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG- 71
            KNVS      Q+L +++++I  G  +V+ G +GSGKST LR +    + ++G+++ +G 
Sbjct: 4   FKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGL 63

Query: 72  ---------HDITQSG--IFHQYKL--QLNWLSLKDAVKEKFTVLDNVQWFEVL---EGK 115
                      I Q    +F Q+ L   L             T L+NV +  +      K
Sbjct: 64  KVNDPKVDERLIRQEAGMVFQQFYLFPHL-------------TALENVMFGPLRVRGASK 110

Query: 116 QGNSLPALELM---GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +     A EL+   GL   A      LS GQ++R+ +AR LA+   + L DEP+ ALD
Sbjct: 111 EEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168

Length = 240

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 66.4 bits (163), Expect = 9e-13
 Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 36/204 (17%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF----SKPSAGEILWNGHDI--- 74
               +R V+  +  G  L + G +GSGKST    L G      + ++GE++ +G D+   
Sbjct: 21  RVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80

Query: 75  TQSGIFHQ------YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----AL 123
           ++  +            Q    SL        T+ D  Q  E L      S       A+
Sbjct: 81  SEREMRKLRGKRIAMIFQDPMTSLNPV----MTIGD--QIREALRLHGKGSRAEARKRAV 134

Query: 124 ELMGLGRLA-KEKARM----LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR--- 175
           EL+    L   E+       LS G R+R+ +A  LA+   + + DEP+ ALD   V    
Sbjct: 135 ELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALD---VTTQA 191

Query: 176 -LLEYIIAEHRKKGGIVIVATHLP 198
            +L+ +    R+ G  V+  TH  
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDL 215

Length = 539

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 65.2 bits (159), Expect = 9e-13
 Identities = 49/188 (26%), Positives = 85/188 (45%), Gaps = 17/188 (9%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT----- 75
           +   IL ++++ I  G  + + G +GSGKST  +++  F  P  G +L +GHD+      
Sbjct: 13  DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72

Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
               Q G+  Q  +  N  S++D +      +   +  E  +    +   +    G   +
Sbjct: 73  WLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTI 131

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK---G 188
             E+   LS GQR+R+ +AR L  +  I + DE + ALDY+     E+ I  +      G
Sbjct: 132 VGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES----EHAIMRNMHDICAG 187

Query: 189 GIVIVATH 196
             VI+  H
Sbjct: 188 RTVIIIAH 195

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 62.9 bits (154), Expect = 9e-13
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 61/184 (33%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+N+S     + +L+ ++++I+ G  + L G NG+GKST L+++AG  +P  G + W   
Sbjct: 3   LENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW--G 60

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
              + G F Q       LS                                   G     
Sbjct: 61  STVKIGYFEQ-------LS----------------------------------GG----- 74

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
            EK R         L LA+LL  +  + LLDEP+  LD + +  LE  + E+    G VI
Sbjct: 75  -EKMR---------LALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVI 121

Query: 193 VATH 196
           + +H
Sbjct: 122 LVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.6 bits (160), Expect = 1e-12
 Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 28/190 (14%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L +++  + +G  + L G  GSGKST ++      KPS+G I   G+ IT          
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHIT---------P 73

Query: 86  QLNWLSLKDAVKE-----KF--------TVLDNVQW----FEVLEGKQGN-SLPALELMG 127
           +    +LK   K+     +F        TVL +V++    F   E +    +L  L+ +G
Sbjct: 74  ETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVG 133

Query: 128 LGRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
           L      K+   LS GQ +R+ +A ++A +  I  LDEP+  LD +G + +  +  +++K
Sbjct: 134 LSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK 193

Query: 187 KGGIVIVATH 196
            G  VI+ TH
Sbjct: 194 AGHTVILVTH 203

Length = 287

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.7 bits (157), Expect = 1e-12
 Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 50/215 (23%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEIL 68
           ++V+        L+ +++ I +   +   G +G GKSTFLR+    +   P+    GEI 
Sbjct: 7   RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66

Query: 69  WNGHDITQSG------------IFHQ-------------YKLQLNWLSLKDAVKEKF--T 101
            +G +I   G            +F +             Y L++N +     ++++   T
Sbjct: 67  IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEET 126

Query: 102 VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161
           +     W EV      + L            KE A  LS GQ++RL +AR +A+   + L
Sbjct: 127 LKGAALWDEV-----KDKL------------KESAFALSGGQQQRLCIARAMAVSPSVLL 169

Query: 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           +DEP+ ALD      +E +I E +K   IVIV TH
Sbjct: 170 MDEPASALDPISTAKVEELIHELKKDYTIVIV-TH 203

Length = 250

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 32/195 (16%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++NV+   + +Q+++  +  +  G  + L G NG GK+T L+++ G  +  +G I    H
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI----H 377

Query: 73  DITQSGI--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
             T+  +  F Q++ +L+         EK TV+DN+      EGKQ   +       LG 
Sbjct: 378 CGTKLEVAYFDQHRAELD--------PEK-TVMDNLA-----EGKQEVMVNGRPRHVLGY 423

Query: 131 L---------AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           L         A    + LS G+R RL LARL      + +LDEP+  LD + + LLE ++
Sbjct: 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELL 483

Query: 182 AEHRKKGGIVIVATH 196
             ++   G V++ +H
Sbjct: 484 DSYQ---GTVLLVSH 495

Length = 635

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 47/203 (23%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           ++ ++L ++N+ I  G  + + G +GSGKST  ++L     P  G++L +G D+      
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAI---- 523

Query: 81  HQYKLQLNWLS------LKDAVKEKFTVLDNVQWFEVLEGKQGN-SLPALELMGLGRLA- 132
                   WL       L++ V    ++ DN+           N   P   ++   +LA 
Sbjct: 524 ----ADPAWLRRQMGVVLQENVLFSRSIRDNI--------ALCNPGAPFEHVIHAAKLAG 571

Query: 133 ----------------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
                            EK   LS GQR+R+ +AR L  +  I + DE + ALDY+    
Sbjct: 572 AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES--- 628

Query: 177 LEYIIAEHRK---KGGIVIVATH 196
            E +I  + +   +G  VI+  H
Sbjct: 629 -EALIMRNMREICRGRTVIIIAH 650

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 64.1 bits (157), Expect = 2e-12
 Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 20/179 (11%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
             L+ V+  +  G  + L G NG+GKST LR+LAG   P +G +   G            
Sbjct: 36  WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------------ 83

Query: 84  KLQLNW-LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMGLGRLAKEKAR 137
             +++  L L      + T  +N+     L G     +       +E   LG       +
Sbjct: 84  --RVSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVK 141

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
             S G + RL  A   A++  I L+DE     D       +  + E  K+G  VI+ +H
Sbjct: 142 TYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH 200

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 56/198 (28%), Positives = 98/198 (49%), Gaps = 19/198 (9%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++ VS  R  + I  ++++++  G    + G +G GK+T LR++ G   P  GEIL++G 
Sbjct: 10  MRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69

Query: 73  DI---TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA------- 122
           +I   ++S ++   K +++ L    A+     V DNV +      ++   LPA       
Sbjct: 70  NIPAMSRSRLYTVRK-RMSMLFQSGALFTDMNVFDNVAY----PLREHTQLPAPLLHSTV 124

Query: 123 ---LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
              LE +GL   AK     LS G  +R  LAR +A++  + + DEP V  D   + +L  
Sbjct: 125 MMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK 184

Query: 180 IIAEHRKKGGIV-IVATH 196
           +I+E     G+  +V +H
Sbjct: 185 LISELNSALGVTCVVVSH 202

Length = 269

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.7 bits (158), Expect = 2e-12
 Identities = 57/198 (28%), Positives = 91/198 (45%), Gaps = 26/198 (13%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  VN+SI  G  + + G  GSGKST L+ L G  +P++G +      IT        K 
Sbjct: 23  LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAG------KK 76

Query: 86  QLNWLSLKDAVKEKF----------TVLDNV----QWFEVLEGK-QGNSLPALELMGLGR 130
                 L+  V   F          TV  ++      F V E   +  +   +EL+GL  
Sbjct: 77  NKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE 136

Query: 131 LAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHRKKG 188
               ++   LS GQ +R+ +A +LA++  + +LDEP+  LD  G + ++E     H++KG
Sbjct: 137 ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKG 196

Query: 189 GIVIVATHLPIQIEDAMN 206
              ++ TH    +EDA  
Sbjct: 197 LTTVLVTH---SMEDAAR 211

Length = 290

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 24/222 (10%)

Query: 12  LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
           L K+V    +   IL  V + +  G  + L G +GSGKST L +LAG    S+GE+   G
Sbjct: 12  LKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71

Query: 72  HDITQSGIFHQYKLQLNWLSLKDAVKEKF------TVLDNVQWFEVLEGK-----QGNSL 120
             + Q     + KL+   +     V + F        L+NV+   +L G+     +  + 
Sbjct: 72  QPLHQMDEEARAKLRAKHVGF---VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK 128

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEY 179
             LE +GLG+        LS G+++R+ LAR       +   DEP+  LD   G ++ + 
Sbjct: 129 ALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188

Query: 180 IIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVD 221
           + + +R+ G  +I+ TH         +L+L  R  RR+ LV+
Sbjct: 189 LFSLNREHGTTLILVTH---------DLQLAARCDRRLRLVN 221

Length = 228

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 51/185 (27%), Positives = 91/185 (49%), Gaps = 10/185 (5%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
             +++ L ++N        + + G NG+GKST  R   G  KP++G +L  G  IT+  I
Sbjct: 14  SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI 73

Query: 80  FHQYKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLA 132
               K     L  ++   + F  TV  ++ +  +  G    ++      AL ++GL  L 
Sbjct: 74  REVRKFV--GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELR 131

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHRKKGGIV 191
                 LS G++KR+ +A ++A++  + +LDEP+  LD  GV+ L++++       G  V
Sbjct: 132 DRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTV 191

Query: 192 IVATH 196
           I +TH
Sbjct: 192 IFSTH 196

Length = 277

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 64.0 bits (156), Expect = 3e-12
 Identities = 64/197 (32%), Positives = 94/197 (47%), Gaps = 17/197 (8%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+NVS     + +L  ++++   G    L G NGSGKST L+ML     PS GEIL +  
Sbjct: 14  LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73

Query: 73  DITQ--SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ-----WFEVLEGKQGNS-----L 120
            +    S  F +   ++ +L  +    E  TV + V      W   L G+ G +      
Sbjct: 74  PLESWSSKAFAR---KVAYLPQQLPAAEGMTVRELVAIGRYPWHGAL-GRFGAADREKVE 129

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY-DGVRLLEY 179
            A+ L+GL  LA      LS G+R+R  +A L+A D    LLDEP+ ALD    V +L  
Sbjct: 130 EAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189

Query: 180 IIAEHRKKGGIVIVATH 196
           +    +++G  VI   H
Sbjct: 190 VHRLSQERGLTVIAVLH 206

Length = 265

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 54/189 (28%), Positives = 78/189 (41%), Gaps = 35/189 (18%)

Query: 35  DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG--------------HDITQSGIF 80
           +     + G +G+GKST LR +AG  KP  G I+ NG                     +F
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEK 135
            QY L  +             V +N+ +   L+ K+           L+L+GL  L    
Sbjct: 82  QQYALFPH-----------LNVRENLAF--GLKRKRNREDRISVDELLDLLGLDHLLNRY 128

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR--LLEYIIAEHRKKGGIVIV 193
              LS G+++R+ LAR LA    + LLDEP  ALD   +R  LL  +    +     VI 
Sbjct: 129 PAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLLPELKQIKKNLNIPVIF 187

Query: 194 ATHLPIQIE 202
            TH   + E
Sbjct: 188 VTHDLSEAE 196

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.9 bits (156), Expect = 3e-12
 Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 29/191 (15%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           + L+ +N     G  + L G NG+GKST      G  KP++GE+L  G  I       +Y
Sbjct: 16  EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPI-------KY 68

Query: 84  KLQLNWLSLKDAVKEKFTVLDNV--QWF------EVLEGKQGNSLP----------ALEL 125
             +    SL +  K    V  N   Q F      +V  G     L           AL+ 
Sbjct: 69  DKK----SLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +G+     +    LS GQ+KR+ +A +LA+   I +LDEP+  LD  G   +  ++ +  
Sbjct: 125 VGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184

Query: 186 KKGGIVIVATH 196
           K+G  +I++TH
Sbjct: 185 KEGITIIISTH 195

Length = 275

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 63.4 bits (155), Expect = 3e-12
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 20/178 (11%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            L+ ++  I+ G  + + G NG+GKST L+++AG  KP++G++   G             
Sbjct: 42  ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG------------- 88

Query: 85  LQLNWL-SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMGLGRLAKEKARM 138
            ++  L  L      + T  +N+    ++ G     +       +E   LG    +  + 
Sbjct: 89  -KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKT 147

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            S G   RL  +    ++  I LLDE     D          + E  +K   +++ +H
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSH 205

Length = 249

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 53/201 (26%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +LR+V++S++ G  +VL G +GSGKST LR L     P  G+IL          + H+  
Sbjct: 26  VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQIL----------VRHEG- 74

Query: 85  LQLNWLSLKDA---------------VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG 129
               W+ L  A               V +   V+  V   +V+      + P L      
Sbjct: 75  ---EWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVV------AEPLLARGVPR 125

Query: 130 RLAKEKARML------------------SMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
            +A+ KA  L                  S G+++R+ +AR   +D PI LLDEP+ +LD 
Sbjct: 126 EVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185

Query: 172 DGVRLLEYIIAEHRKKGGIVI 192
               ++  +I E + +G  ++
Sbjct: 186 TNRAVVVELIREAKARGAALV 206

Length = 235

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 63.5 bits (155), Expect = 4e-12
 Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 30/192 (15%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
              L++V+  I++G  + + G NGSGKST  ++L G  KP +GEI  +G  I++  +   
Sbjct: 22  NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKE- 80

Query: 83  YKLQLNWLSLKDAVKEKF----------TVLDNVQWFEVLEGKQGNS-------LPALEL 125
                    ++  +   F          TV D++ +   LE K+              + 
Sbjct: 81  ---------IRKKIGIIFQNPDNQFIGATVEDDIAF--GLENKKVPPKKMKDIIDDLAKK 129

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +G+     ++ + LS GQ++R+ +A +LA++  I + DE +  LD  G R ++ I+ + R
Sbjct: 130 VGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLR 189

Query: 186 KKGG-IVIVATH 196
           K     +I  TH
Sbjct: 190 KTRKKTLISITH 201

Length = 271

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 47/167 (28%), Positives = 78/167 (46%), Gaps = 23/167 (13%)

Query: 32  SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
            I+DG  + + G NG GK+TF+++LAG  KP  G       D+  S     YK Q     
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE----DLKVS-----YKPQ----- 408

Query: 92  LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---MGLGRLAKEKARMLSMGQRKRLQ 148
              +     TV D +     +    G+S    E+   + L  L +     LS G+ +R+ 
Sbjct: 409 -YISPDYDGTVEDLL--RSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVA 465

Query: 149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYII---AEHRKKGGIVI 192
           +A  L+ +  ++LLDEPS  LD +   ++  +I    E+ +K  +V+
Sbjct: 466 IAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVV 512

Length = 591

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 64.4 bits (157), Expect = 5e-12
 Identities = 60/203 (29%), Positives = 97/203 (47%), Gaps = 12/203 (5%)

Query: 10  RLLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           R+ + NVS   R+   +L+++N+S+   G + L G  GSGKST   +L G+   + GEI 
Sbjct: 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV---------QWFEVLEGKQGNS 119
            +G  +  S + H    Q   +  +D V    T L NV         Q ++ LE  Q   
Sbjct: 400 LDGRPL--SSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAE 457

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
           L      GL     E+   LS+GQ++ L LAR+L     I +LDE +  +D    + ++ 
Sbjct: 458 LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517

Query: 180 IIAEHRKKGGIVIVATHLPIQIE 202
            +A  R+   +V++A  L   +E
Sbjct: 518 ALAAVREHTTLVVIAHRLSTIVE 540

Length = 592

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.5 bits (152), Expect = 7e-12
 Identities = 62/208 (29%), Positives = 96/208 (46%), Gaps = 35/208 (16%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEIL 68
           KN++    ++QIL  +N+ I+        G +G GKSTFLR     +         GE+ 
Sbjct: 9   KNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNSL 120
            +G D+        Y +  N + L+  V   F        ++ DNV +   L G   N  
Sbjct: 69  IDGIDV--------YSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKK 120

Query: 121 P-------ALELMGL-----GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
                   +L  +GL      RL K+ A  LS GQ++RL +AR +A+   + L+DEP  A
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSA 179

Query: 169 LDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           LD     ++E +I E +K   I++V TH
Sbjct: 180 LDPVATNVIENLIQELKKNFTIIVV-TH 206

Length = 251

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 62.6 bits (152), Expect = 8e-12
 Identities = 50/197 (25%), Positives = 97/197 (49%), Gaps = 10/197 (5%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           +  L  KN++     ++++  V+++++ G  + L G NG+GK+T   M+ G     AG I
Sbjct: 1   MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNS 119
           + +  DI+   +  + +  + +L  + ++  + +V DN+    VL        E ++  +
Sbjct: 61  IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRA 118

Query: 120 LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
              +E   +  L     + LS G+R+R+++AR LA +    LLDEP   +D   V  ++ 
Sbjct: 119 NELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKR 178

Query: 180 IIAEHRKKGGIVIVATH 196
           II   R  G  V++  H
Sbjct: 179 IIEHLRDSGLGVLITDH 195

Length = 241

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.6 bits (152), Expect = 9e-12
 Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 32/198 (16%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQ 76
               L+++N+SI +     + G +G GKSTF++ L    +        GE+ +NG +I +
Sbjct: 24  QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83

Query: 77  SGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG----KQGNSLPALE 124
                    +++ + L+  +   F        ++ DNV +   + G    K+   +    
Sbjct: 84  G--------KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKS 135

Query: 125 LMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
           L  +    + K R+      LS GQ++RL +AR LA +  + L+DEP+ ALD    R +E
Sbjct: 136 LKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195

Query: 179 YIIAEHRKKGGIVIVATH 196
            +I + ++K  IVIV TH
Sbjct: 196 ELILKLKEKYTIVIV-TH 212

Length = 259

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.7 bits (152), Expect = 9e-12
 Identities = 63/220 (28%), Positives = 94/220 (42%), Gaps = 54/220 (24%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---G 65
           L +K++S     ++ +  +++ I       L G +G GKSTFLR +   +   PSA   G
Sbjct: 22  LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81

Query: 66  EILWNGHDITQSGI------------FHQ-----------------YKLQLNWLSLKDAV 96
           EIL+ G +I  S I            F +                 Y  +     L + V
Sbjct: 82  EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141

Query: 97  KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID 156
           +E  T      W EV +                RL    A  LS GQ++RL +AR LA+ 
Sbjct: 142 EESLT--KAALWDEVKD----------------RL-HSSALSLSGGQQQRLCIARTLAMK 182

Query: 157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
             + LLDEP+ ALD      +E +I E +++  I+IV TH
Sbjct: 183 PAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV-TH 221

Length = 268

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 30/203 (14%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH--DITQSGIF 80
           + +L+ +N+         L G NG GKST    L+G  +P  G +LW G   D ++ G+ 
Sbjct: 14  EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL- 72

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL---------------PALEL 125
                    L+L+  V   F   +   ++  ++     SL                AL L
Sbjct: 73  ---------LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +       +  + LS GQ+KR+ +A  L +     LLDEP+  LD  G   +  II    
Sbjct: 124 VDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183

Query: 186 KKGGIVIVATH---LPIQIEDAM 205
            +G  VI+++H   L  +I DA+
Sbjct: 184 AQGNHVIISSHDIDLIYEISDAV 206

Length = 271

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 15/198 (7%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           +KN+    + Q +L  +++ +  G  + + G +GSGK+T LR +    +P AG I     
Sbjct: 6   VKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDI 65

Query: 73  DITQSGIFHQYKLQLNWLSLKDA-VKEKF------TVLDNVQWFEVL---EGKQGNSLPA 122
            I  +    Q K  +  L      V + F      TVL+N+    V+   E K+  +  A
Sbjct: 66  TIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARA 125

Query: 123 LELMG-LGRLAKEKA--RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV-RLLE 178
            EL+  +G   KE +  R LS GQ++R+ +AR LA+   + L DEP+ ALD + V  +L 
Sbjct: 126 RELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLN 185

Query: 179 YIIAEHRKKGGIVIVATH 196
            I    ++K  +VIV TH
Sbjct: 186 TIRQLAQEKRTMVIV-TH 202

Length = 250

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 25/190 (13%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           Q+L  +N+ I+ G  ++LTG +GSGK+T L ++ G      G +   G ++  +      
Sbjct: 19  QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78

Query: 79  --------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR 130
                   IF  + L L +L+ +  V+    +  N+ + E  E     +   LE +GLG 
Sbjct: 79  QLRRNIGYIFQAHNL-LGFLTARQNVQMALELQPNLSYQEARE----RARAMLEAVGLGD 133

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD----YDGVRLLEYIIAEHRK 186
                   LS GQ++R+ +AR L     + L DEP+ ALD     D V L++ +  E   
Sbjct: 134 HLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ-- 191

Query: 187 KGGIVIVATH 196
            G  +++ TH
Sbjct: 192 -GCTILIVTH 200

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 49/199 (24%), Positives = 87/199 (43%), Gaps = 32/199 (16%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R    +L+ +  ++H G  + L G +GSGKST   +L    +P+ G++L +G  + Q   
Sbjct: 491 RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ--Y 548

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA------- 132
            H Y  +   L  ++ V    +V +N+ +            P  E+M   + A       
Sbjct: 549 DHHYLHRQVALVGQEPVLFSGSVRENIAY-------GLTDTPDEEIMAAAKAANAHDFIM 601

Query: 133 ----------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
                      EK   LS GQ++R+ +AR L     + +LDE + ALD +     E ++ 
Sbjct: 602 EFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLLQ 657

Query: 183 EHRKKGG--IVIVATHLPI 199
           E R +    ++++A  L  
Sbjct: 658 ESRSRASRTVLLIAHRLST 676

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 36/206 (17%)

Query: 13  LKNVSCMRNAQQ--ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            KNVS    +     L+ V+ +I  G    + G NGSGKST  +++ G  K  +GEI +N
Sbjct: 10  FKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYN 69

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN---------VQWFEVLEGKQGNSLP 121
              IT               + +   K    V  N         V+ ++V  G + +++P
Sbjct: 70  NQAITDD-------------NFEKLRKHIGIVFQNPDNQFVGSIVK-YDVAFGLENHAVP 115

Query: 122 ----------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
                     AL+ + +   A  +   LS GQ++R+ +A +LA++  + +LDE +  LD 
Sbjct: 116 YDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175

Query: 172 DGVRLLEYIIAEHRKKGGIVIVA-TH 196
           D  + L  ++ + + +  I I++ TH
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITH 201

Length = 269

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 55/180 (30%), Positives = 85/180 (47%), Gaps = 15/180 (8%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +LR++N+ I  G  + + G +G+GK+T LRM+ G  K               SG     +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK-----GRGEEKYRPDSGKV---E 449

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM---GLGR--LAKEKARML 139
           +  N +S     + +      V   E L  K G+   A+E++   GL    L + K   L
Sbjct: 450 VPKNTVSALIPGEYEPE-FGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSEL 508

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLP 198
           S GQ++R +LA+LLA    + L+DE +  LD    VR+   I    R+ G  +IV TH P
Sbjct: 509 STGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP 568

Length = 593

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 51/218 (23%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRML--AGFSKPS--- 63
           P L + ++S   N ++ L  V++  +      L G +GSGKST LR +       P    
Sbjct: 4   PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI 63

Query: 64  AGEILWNGHDITQSG------------IFHQ-------------YKLQLNWLSLK---DA 95
            G I++NGH+I                +F Q             Y L+L  +  K   D 
Sbjct: 64  TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDE 123

Query: 96  VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155
             EK     ++ W EV +                RL  + A  LS GQ++R+ +AR+LA 
Sbjct: 124 AVEKSLKGASI-WDEVKD----------------RL-HDSALGLSGGQQQRVCIARVLAT 165

Query: 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193
              I LLDEP+ ALD      +E  +   +    +++V
Sbjct: 166 SPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLV 203

Length = 252

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 20/195 (10%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R   + ++ V+ ++ +G  L + G NGSGKST  +MLAG  +P++GEIL N H +     
Sbjct: 23  RQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD- 81

Query: 80  FHQYKLQLNWLSLKDAVKEKF-------TVLD-----NVQWFEVLEGKQGNSLPALELMG 127
            + ++ +   +  +D              +LD     N       E ++      L ++G
Sbjct: 82  -YSFRSKRIRMIFQDP-NTSLNPRLRIGQILDFPLRLNTDLEP--EQRRKQIFETLRMVG 137

Query: 128 L-GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
           L    A     ML+ GQ++R+ LAR L +   I + DE   +LD      L  ++ E ++
Sbjct: 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQE 197

Query: 187 KGGI--VIVATHLPI 199
           K GI  + V  H+ +
Sbjct: 198 KQGISYIYVTQHIGM 212

Length = 267

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 60/215 (27%), Positives = 98/215 (45%), Gaps = 56/215 (26%)

Query: 28  HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG--------HDITQSGI 79
           +VN+ + +   + L G NG+GK+T    L GF KP+ G IL  G        H I + G+
Sbjct: 23  NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82

Query: 80  ---FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS--------LPA------ 122
              F   +L           +E  TV++N+    V + +Q  +         PA      
Sbjct: 83  VRTFQHVRL----------FRE-MTVIENLL---VAQHQQLKTGLFSGLLKTPAFRRAES 128

Query: 123 ---------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYD 172
                    LE +GL   A  +A  L+ GQ++RL++AR + + +P I +LDEP+  L+  
Sbjct: 129 EALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCM-VTQPEILMLDEPAAGLNPK 187

Query: 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
             + L+ +IAE R +  + +      + IE  M L
Sbjct: 188 ETKELDELIAELRNEHNVTV------LLIEHDMKL 216

Length = 255

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 50/171 (29%), Positives = 73/171 (42%), Gaps = 5/171 (2%)

Query: 31  ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL 90
           +S   G  L L G NG+GK+T LR + G   P+ G +   G    +      Y  Q +  
Sbjct: 1   LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60

Query: 91  SLKDAVKEKFTVLDN----VQWFEVLEGKQGNSL-PALELMGLGRLAKEKARMLSMGQRK 145
           +    +    TV+      + W          ++  AL  +GL  LA      LS GQR+
Sbjct: 61  AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQ 120

Query: 146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           R+ +AR LA    + LLDEP   LD     LL  +  E    G  +++ TH
Sbjct: 121 RVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.2 bits (148), Expect = 3e-11
 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 31/210 (14%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PS 63
           P++ ++N++     +Q L++V++ I       L G +G GKSTF+R L   +        
Sbjct: 11  PQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRI 70

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGK 115
            G++   G DI +  +        + + L+  V   F        ++ DNV +   + G 
Sbjct: 71  EGKVSIEGEDIYEPDV--------DVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGA 122

Query: 116 QGNSLPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
               L  +    L   A         K  A  LS GQ++RL +AR LA+   I L DEP+
Sbjct: 123 NKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPT 182

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            ALD      +E +I   +K   IVIV TH
Sbjct: 183 SALDPISTARIEDLIMNLKKDYTIVIV-TH 211

Length = 258

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 61/213 (28%), Positives = 94/213 (44%), Gaps = 35/213 (16%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA-- 64
            ++  ++VS     +Q L  V++ I +       G +G GKSTFLR L   +        
Sbjct: 18  IKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRV 77

Query: 65  -GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGK 115
            G+I  +G DI        Y  +L+ + L+  V   F        ++ +NV +   + G 
Sbjct: 78  TGKITLDGEDI--------YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGL 129

Query: 116 QGNSL-------PALELMGL-----GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
             +          +L   GL      RL  E    LS GQ++RL +AR +A+   + L+D
Sbjct: 130 ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGTGLSGGQQQRLCIARAIAVSPEVILMD 188

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           EP  ALD      +E +I E R+   IVIV TH
Sbjct: 189 EPCSALDPIATAKVEELIDELRQNYTIVIV-TH 220

Length = 267

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 61.3 bits (149), Expect = 4e-11
 Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 44/210 (20%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIF 80
           + L +V++ I+ G  + + G  GSGK+TF+  L     P  G I W   +  +  ++   
Sbjct: 21  KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEK 80

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNV----------------QWFEVL------------ 112
            +   +L    ++   K +F  +  +                Q FE              
Sbjct: 81  EKVLEKLV---IQ---KTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM 134

Query: 113 -----EGKQGNSLPALELMGLGRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPS 166
                E K+  +   +EL+GL     +++   LS GQ++R+ LA +LA++    + DEP+
Sbjct: 135 GVSKEEAKK-RAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
             LD  GV+ +  I     K+G  +I+ TH
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTH 223

Length = 305

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 29/163 (17%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------- 78
           L +V++ I  G    + G +G+GKST +R +    +P++G +L +G D+T          
Sbjct: 21  LNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80

Query: 79  ------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS-----LPALELMG 127
                 IF  +    N LS +       TV DNV     L G             LEL+G
Sbjct: 81  RRQIGMIFQHF----NLLSSR-------TVFDNVALPLELAGTPKAEIKARVTELLELVG 129

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L   A      LS GQ++R+ +AR LA +  + L DE + ALD
Sbjct: 130 LSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172

Length = 343

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 28/168 (16%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           N++Q +  V+     G  + + G  G+GKST + +L     P +G IL +G DI      
Sbjct: 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT---- 401

Query: 81  HQYKLQLNWLSLKDAVKEKF--------TVLDNVQ----------WFEVLEGKQGNSLPA 122
                 +   SL+  +   F        ++ DN++               E  Q +    
Sbjct: 402 ------VTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIE 455

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            +  G   +  E+ R LS G+R+RL +AR L  D PI +LDE + ALD
Sbjct: 456 RKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALD 503

Length = 588

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 30/190 (15%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH--------DITQS 77
           L  ++     G    L G NG+GKST L++L+G  +P AG IL +G             +
Sbjct: 20  LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79

Query: 78  G--IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG---------NSLPALELM 126
           G  I +Q +L L        V E  TV +N+ +   L  K G          +   LE +
Sbjct: 80  GVAIIYQ-ELHL--------VPE-MTVAENL-YLGQLPHKGGIVNRRLLNYEAREQLEHL 128

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
           G+        + LS+GQR+ +++A+ LA +  +   DEP+ +L    +  L  +I E R 
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188

Query: 187 KGGIVIVATH 196
           +G +++  +H
Sbjct: 189 EGRVILYVSH 198

Length = 501

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 35/217 (16%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           +P + + N+S   + Q+IL  V++ I+      + G +G GKSTFL+ L   ++    E+
Sbjct: 5   IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63

Query: 68  LWNGHDITQSGIFHQ--YKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQG 117
              G    +   F+Q  Y+ ++N   L+  V            +V DNV +   + G + 
Sbjct: 64  RVEG----RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWR- 118

Query: 118 NSLPALELMGLGRLAKEKARM--------------LSMGQRKRLQLARLLAIDRPIWLLD 163
              P LE+  +   A + A +              LS GQ++RL +AR LA+   + L+D
Sbjct: 119 ---PKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKG--GIVIVATHLP 198
           EP   LD      +E +I   R +    +VIV+ +L 
Sbjct: 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH 212

Length = 261

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 58/199 (29%), Positives = 85/199 (42%), Gaps = 18/199 (9%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L L  VS     + I+  V+++   G    L G NGSGKST LR+LAG  +P AG +   
Sbjct: 2   LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61

Query: 71  GHDIT---------QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
           G D+          +  +  Q       L+++D V      L  +    +  G   +   
Sbjct: 62  GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV-----ALGRIPHRSLWAGDSPHDAA 116

Query: 122 ----ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177
               AL    L  LA      LS G+R+R+ +AR LA +  + LLDEP+  LD       
Sbjct: 117 VVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLET 176

Query: 178 EYIIAEHRKKGGIVIVATH 196
             ++ E    G  V+ A H
Sbjct: 177 LALVRELAATGVTVVAALH 195

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 13/152 (8%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
           +N ++  G  + L G +G+GK++ L  L GF  P  G +  NG ++ +      ++  L+
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELD-PESWRKHLS 426

Query: 89  WL---------SLKDAVKEKFTVLDNVQWFEVLEGKQGNS-LPALELMGLGRLAKEKARM 138
           W+         +L+D V        + Q  + LE    +  LP L   GL     ++A  
Sbjct: 427 WVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ-GLDTPIGDQAAG 485

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           LS+GQ +RL LAR L     + LLDEP+ +LD
Sbjct: 486 LSVGQAQRLALARALLQPCQLLLLDEPTASLD 517

Length = 588

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 34/215 (15%)

Query: 6   PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS----- 60
              P++  + +S      Q L  +++         L G +G GKSTFLR L   +     
Sbjct: 2   ASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPG 61

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVL 112
               GEIL +G +I        Y   ++ + L+  V   F        ++ +NV +   +
Sbjct: 62  ARVEGEILLDGENI--------YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRV 113

Query: 113 EGKQGNSLPA------LELMGL-----GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL 161
            G +  +  A      L    L      RL  E A  LS GQ++RL +AR LA++  + L
Sbjct: 114 NGVKDKAYLAERVERSLRHAALWDEVKDRLH-ESALGLSGGQQQRLCIARALAVEPEVLL 172

Query: 162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           +DEP+ ALD    + +E +I E + +  I+IV TH
Sbjct: 173 MDEPASALDPIATQKIEELIHELKARYTIIIV-TH 206

Length = 253

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 23/190 (12%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+NVS     +++L  V++ +  G  L L G NG+GKST +R++ G   P  G I     
Sbjct: 7   LENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK---- 62

Query: 73  DITQSGIFHQYKLQLNWLSLK---DAVKEKFTVLDNVQWFEVLEG--KQGNSLPALELMG 127
                      KL++ ++  K   D      T+   V  F  L    K+ + LPAL+ + 
Sbjct: 63  --------RNGKLRIGYVPQKLYLDT-----TLPLTVNRFLRLRPGTKKEDILPALKRVQ 109

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRK 186
            G L     + LS G+ +R+ LAR L     + +LDEP+  +D +G V L + I    R+
Sbjct: 110 AGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRE 169

Query: 187 KGGIVIVATH 196
               V++ +H
Sbjct: 170 LDCAVLMVSH 179

Length = 251

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 61.0 bits (148), Expect = 7e-11
 Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 45/234 (19%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWN 70
           +KN++   + +++L++++ +I +G  L + G +G+GKS  + +L G    +P++G I+++
Sbjct: 3   VKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYH 62

Query: 71  -------GHDITQSGIFHQ--------YKLQLNWLSLKDAVKEKF--------------- 100
                  G+    S +              ++++ +L D ++ +                
Sbjct: 63  VALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALY 122

Query: 101 ---TVLDNVQWFEVLE-----GKQ--GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA 150
              TVLDNV   E LE     GK+  G ++  +E++ L       AR LS G+++R+ LA
Sbjct: 123 GDDTVLDNV--LEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180

Query: 151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVAT-HLPIQIED 203
           R LA +  ++L DEP+  LD    +L+   + E  K  GI +V T H P  IED
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 41/174 (23%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH-----DITQSG 78
            +L++V+++++ G  + L+G +G+GKST L+ L     P +G IL   H     D+ Q+ 
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVR-HEGAWVDLAQAS 80

Query: 79  ---IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKE 134
              +    +  + ++S      +   V+  V   EV+        P LE  G+ R  A+ 
Sbjct: 81  PREVLEVRRKTIGYVS------QFLRVIPRVSALEVVAE------PLLE-RGVPREAARA 127

Query: 135 KARML------------------SMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +AR L                  S G+++R+ +AR    D PI LLDEP+ +LD
Sbjct: 128 RARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 61.2 bits (148), Expect = 7e-11
 Identities = 49/192 (25%), Positives = 91/192 (47%), Gaps = 16/192 (8%)

Query: 18   CMRNAQQILR--------HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            C++N  +I           +NI+ ++       G NG+GK+T L +L G   P++G +L 
Sbjct: 930  CVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLV 989

Query: 70   NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALE 124
             G DI  +      +  L      + +    TV +++ ++  L+G+     Q      LE
Sbjct: 990  GGKDIETN--LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLE 1047

Query: 125  LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
              GL     E+A+ LS G +++L +A     D  + +LDEP+  +D    R +  ++ ++
Sbjct: 1048 DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107

Query: 185  RKKGGIVIVATH 196
            R  G  +I++TH
Sbjct: 1108 R-SGRTIIMSTH 1118

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 28/217 (12%)

Query: 1   MTLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLR----ML 56
           M++      ++ ++N++        L+++N+ I         G +G GKST LR    M 
Sbjct: 4   MSMVATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63

Query: 57  AGFSKPSA-GEILWNGHDITQSGIFHQYKLQLNWLSLK-DAVKEK-----FTVLDN---- 105
             + +  A GEIL +G +I         K  +  L  K   V +K      ++ DN    
Sbjct: 64  ELYPEQRAEGEILLDGENILTP------KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117

Query: 106 VQWFEVLEGKQGNSLP--ALELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPI 159
           V+ FE L   + +     AL    L    K+K       LS GQ++RL +AR +AI   +
Sbjct: 118 VRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEV 177

Query: 160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            LLDEP  ALD      +E +I E ++   +VIV TH
Sbjct: 178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIV-TH 213

Length = 260

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 59.6 bits (144), Expect = 8e-11
 Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 17/204 (8%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSA-- 64
             L  ++V+     +Q +++VN+ +  G    L G +G GK+TFLR +       P A  
Sbjct: 3   LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARV 62

Query: 65  -GEILWNGHDITQSGIFH-QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGN 118
            G IL +G DI    +     + ++  +  K       +V DNV     L G        
Sbjct: 63  TGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM 122

Query: 119 SLPALELMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
            +    L G     + K R+      LS GQ++RL +AR LA++  I L+DEP+ ALD  
Sbjct: 123 EVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPA 182

Query: 173 GVRLLEYIIAEHRKKGGIVIVATH 196
               +E ++ + +K   I+IV TH
Sbjct: 183 STARIEDLMTDLKKVTTIIIV-TH 205

Length = 252

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 60.6 bits (148), Expect = 8e-11
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 43/176 (24%)

Query: 33  IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL----- 87
           I++G  + + G NG GK+TF ++LAG  KP  GE+     ++  S     YK Q      
Sbjct: 362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP---ELKIS-----YKPQYIKPDY 413

Query: 88  -----NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG 142
                + L    ++ +      +    E+++            + L RL  +  + LS G
Sbjct: 414 DGTVEDLLR---SITDDLG--SSYYKSEIIKP-----------LQLERLLDKNVKDLSGG 457

Query: 143 QRKRLQLARLLAIDRPIWLLDEPSVALDYDGV--RLL--EYI--IAEHRKKGGIVI 192
           + +R+ +A  L+ D  ++LLDEPS  LD   V  RL   + I  IAE R+   +V+
Sbjct: 458 ELQRVAIAACLSRDADLYLLDEPSAHLD---VEQRLAVAKAIRRIAEEREATALVV 510

Length = 590

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 58.2 bits (142), Expect = 8e-11
 Identities = 51/185 (27%), Positives = 75/185 (40%), Gaps = 66/185 (35%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------ 75
             + L  V++S+  G    L G NG+GKST +++L+G  KP +GEIL +G +++      
Sbjct: 12  GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRD 71

Query: 76  --QSGI--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
             ++GI   +Q       LS    V E+  V                             
Sbjct: 72  ARRAGIAMVYQ-------LS----VGERQMV----------------------------- 91

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
             E AR L+         ARLL       +LDEP+ AL    V  L  +I   R +G  V
Sbjct: 92  --EIARALARN-------ARLL-------ILDEPTAALTPAEVERLFKVIRRLRAQGVAV 135

Query: 192 IVATH 196
           I  +H
Sbjct: 136 IFISH 140

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 53/191 (27%), Positives = 91/191 (47%), Gaps = 28/191 (14%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
           Q L +V++ +  G    + G +G+GKST +R +    +P++G ++ +G D+T        
Sbjct: 19  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELT 78

Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
               Q G+  Q+    N LS +       TV  NV     L+    + +       L L+
Sbjct: 79  KARRQIGMIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEIKRKVTELLALV 128

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
           GLG         LS GQ++R+ +AR LA +  + L DE + ALD    + +LE +   +R
Sbjct: 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188

Query: 186 KKGGIVIVATH 196
           + G  +++ TH
Sbjct: 189 RLGLTILLITH 199

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 7/190 (3%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L  VS     + ++  ++ +I  G    L G NG+GKST  RML G   P  G+I   G 
Sbjct: 7   LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMG 127
            +       +  + +  +   D +  +FTV +N+  F    G     +       LE   
Sbjct: 67  PVPSRARLARVAIGV--VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 124

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           L   A  +  +LS G ++RL LAR L  D  + +LDEP+  LD     L+   +     +
Sbjct: 125 LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184

Query: 188 GGIVIVATHL 197
           G  +++ TH 
Sbjct: 185 GKTILLTTHF 194

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 43/177 (24%), Positives = 74/177 (41%), Gaps = 30/177 (16%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEILWNGHDITQSGIFH 81
           Q+L++V+     G    + G +G+GKST L  LAG        GE+L NG  + +     
Sbjct: 23  QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK----R 78

Query: 82  QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSM 141
            ++  + ++   D +    TV + + +             A +L G           LS 
Sbjct: 79  SFRKIIGYVPQDDILHPTLTVRETLMF-------------AAKLRG-----------LSG 114

Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198
           G+RKR+ +A  L  +  +  LDEP+  LD      +  ++      G  +I + H P
Sbjct: 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQP 171

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 46/208 (22%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEILWNGHDI---- 74
            +++ V++ I   G   L G +G GKST LR      +    A   GE+   G +I    
Sbjct: 18  HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77

Query: 75  -------TQSGIFHQYKLQLNWLSLKDAV----------KEKFTVLDNVQWFEVLEGKQG 117
                   + G+  QY      L++ D V          K K  + + V+W         
Sbjct: 78  VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW--------- 128

Query: 118 NSLPALELMGL-----GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
               AL+   L      RL  +    LS GQR+RL +AR LA+   I L+DEP+  +D  
Sbjct: 129 ----ALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPV 183

Query: 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQ 200
           G   +E ++ E +K+  IV+V TH P Q
Sbjct: 184 GTAKIEELLFELKKEYTIVLV-THSPAQ 210

Length = 253

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 17/185 (9%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +  ++ + I DG    + G NG GKST LR L+    P+ G +  +G  I       +  
Sbjct: 22  VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS-KEVA 80

Query: 85  LQLNWLSLKDAVKEKFTVLDNV------------QWFEVLEGKQGNSLPALELMGLGRLA 132
            ++  L+         TV + V            +W +  E     ++ A    G+  LA
Sbjct: 81  RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQA---TGITHLA 137

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIV 191
            +    LS GQR+R  +A +LA +  I LLDEP+  LD    + LLE +   +R+KG  +
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTL 197

Query: 192 IVATH 196
               H
Sbjct: 198 AAVLH 202

Length = 265

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 14/162 (8%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R  Q  L  +N+++  G  + L G +G+GKST  ++L  F  P +G IL +G D+ Q   
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----------GL 128
             + + ++  L  +D V    +V++N++ +   +        A               G 
Sbjct: 410 -AELRARMA-LVPQDPVLFAASVMENIR-YGRPDATDEEVEAAARAAHAHEFISALPEGY 466

Query: 129 GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                E+   LS GQR+R+ +AR +  D PI LLDE + ALD
Sbjct: 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALD 508

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 52/193 (26%), Positives = 91/193 (47%), Gaps = 42/193 (21%)

Query: 6   PPLPRLL----LKNVSC--MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF 59
            P PRL     L+N++         ++ + ++++  G  + L G +GSGKST  +++AG 
Sbjct: 469 EPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL 528

Query: 60  SKPSAGEILWNGH---DITQSGIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEG 114
            +P +GEIL++G    +I +  +        N +++ D     F  TV DN+  ++    
Sbjct: 529 YQPWSGEILFDGIPREEIPREVLA-------NSVAMVDQDIFLFEGTVRDNLTLWD---- 577

Query: 115 KQGNSLPALELMGLGRLA-----------------KEKARMLSMGQRKRLQLARLLAIDR 157
               ++P  +L+   + A                  E    LS GQR+RL++AR L  + 
Sbjct: 578 ---PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634

Query: 158 PIWLLDEPSVALD 170
            I +LDE + ALD
Sbjct: 635 SILILDEATSALD 647

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 139 LSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
           LS G+++   LA +LA+     RP+++LDE    LD    + L   I EH  KG  VIV 
Sbjct: 78  LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVI 137

Query: 195 THLPIQIEDA 204
           THLP   E A
Sbjct: 138 THLPELAELA 147

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 57/203 (28%), Positives = 97/203 (47%), Gaps = 30/203 (14%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-----SKPSA-GEILWNGHDI 74
           N + IL+ + I I +     + G +GSGKST L++L        SK    G++L+ G DI
Sbjct: 21  NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDI 80

Query: 75  TQ---------SGIFHQYKLQLNWLSLKDAVK---EKFTVLDNVQWFEVLEGKQGNSLPA 122
            Q          G+  Q       LS+ D +    +   + +  +  +++E         
Sbjct: 81  FQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVE-------EC 133

Query: 123 LELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
           L  +GL +   ++    A  LS GQ++RL +AR LA+   + L+DEP+  +D    + +E
Sbjct: 134 LRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193

Query: 179 YIIAEHRKKGGIVIVATHLPIQI 201
            +I E + +  IVIV +H P Q+
Sbjct: 194 KLITELKNEIAIVIV-SHNPQQV 215

Length = 257

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 37/214 (17%)

Query: 13  LKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
           L+NVS    +    L ++N+ I  G  + + G NGSGKST    L G  +P  G++L +G
Sbjct: 4   LENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSG 63

Query: 72  HDITQSGIFHQYKLQLNWLSLKDAVKEKF----------TVLDNVQWFEVLEGKQGNSLP 121
            D   +G F   KLQ     ++  V   F          TV +++ +     G +   LP
Sbjct: 64  ID---TGDFS--KLQ----GIRKLVGIVFQNPETQFVGRTVEEDLAF-----GPENLCLP 109

Query: 122 ALEL----------MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
            +E+          +GL +      + LS GQ + + LA +L ++    + DE +  LD 
Sbjct: 110 PIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDP 169

Query: 172 D-GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204
           D G+ +LE I   H  KG  ++  TH   ++ DA
Sbjct: 170 DSGIAVLERIKKLHE-KGKTIVYITHNLEELHDA 202

Length = 274

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 57.5 bits (140), Expect = 3e-10
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 15/196 (7%)

Query: 14  KNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           KNVS +R   N   +L++++ SI  G  + + G  GSGKS+ L  L    + S+G IL +
Sbjct: 6   KNVS-LRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILID 64

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF---------EVLEGKQGNSLP 121
           G DI++ G+ H  + +++ +  +D V    T+  N+  F         + LE        
Sbjct: 65  GVDISKIGL-HDLRSRISIIP-QDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFV 122

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
                GL  + +E    LS+GQR+ L LAR L     I +LDE + ++D +   L++  I
Sbjct: 123 ESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTI 182

Query: 182 AEHRKKGGIVIVATHL 197
            E  K   ++ +A  L
Sbjct: 183 REAFKDCTVLTIAHRL 198

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 56/206 (27%), Positives = 96/206 (46%), Gaps = 32/206 (15%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-----SKPSAGEIL 68
           +N++        L+++N+ IH+     + G +G GKST+++ L        S  + G+IL
Sbjct: 28  QNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKIL 87

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG----KQ 116
           +   +I        Y ++     L+  V   F        ++ DNV +   + G    K 
Sbjct: 88  YRDQNIFDK----SYSVE----ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKT 139

Query: 117 GNSLPALELMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            + +    L G     + K R+      LS GQ++RL +AR LAI+  + L+DEP+ ALD
Sbjct: 140 LDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
                 +E ++ E +K   I+IV TH
Sbjct: 200 PISTLKVEELVQELKKDYSIIIV-TH 224

Length = 271

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 27/213 (12%)

Query: 11  LLLKNVSCMRNAQQ-----ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG 65
           L +KN+ C+ + +Q      L +++ +        + G +GSGKST +    G  K   G
Sbjct: 22  LRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG 81

Query: 66  EI----LWNGHDI--TQSGIFHQYKLQLNWLSLKDAVKEKF----------TVLDNVQWF 109
            I    ++ G      +       K   N+  L+  V   F          T+  ++ + 
Sbjct: 82  TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG 141

Query: 110 EVLEGKQGNSLPA-----LELMGLGRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLD 163
            V  G + +         L  MGL     E++   LS GQ++R+ +A +LAI   I + D
Sbjct: 142 PVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           EP+  LD  G   +  +I + +     V V TH
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITH 234

Length = 320

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 18/194 (9%)

Query: 19  MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-----KPSAGEILWNGHD 73
           M   + +L  +N+ I         G +G GKSTFLR L   +         GEI + G +
Sbjct: 91  MNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTN 150

Query: 74  ITQSGIFHQYKLQLN-WLSLKDAVKEKFTVLDNVQW---------FEVLEGKQGNSLPAL 123
            T+S      +L+    +  +     + ++ DNV +          ++LE     SL + 
Sbjct: 151 -TRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSA 209

Query: 124 ELMGLGRLAKEKA-RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
            L    +   +KA   LS GQ++RL +AR +A++  + L+DEP+ ALD      +E +I 
Sbjct: 210 ALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269

Query: 183 EHRKKGGIVIVATH 196
           E +KK  I+IV TH
Sbjct: 270 ELKKKYSIIIV-TH 282

Length = 329

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 30/159 (18%)

Query: 28  HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGI 79
             ++++  G  + + G +G+GKST L ++AGF  P++G +  NG D T         S +
Sbjct: 17  RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76

Query: 80  FHQYKL-------QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL-ELMGLGRL 131
           F +  L       Q   L L   +K              L   Q   L A+   MG+  L
Sbjct: 77  FQENNLFSHLTVAQNIGLGLNPGLK--------------LNAAQREKLHAIARQMGIEDL 122

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                  LS GQR+R+ LAR L  ++PI LLDEP  ALD
Sbjct: 123 LARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD 161

Length = 232

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 52/190 (27%), Positives = 86/190 (45%), Gaps = 7/190 (3%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L  VS     + ++  ++ ++  G    L G NG+GKST  RM+ G + P AG+I   G 
Sbjct: 44  LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMG 127
            +       + ++ +  +   D +  +FTV +N+  F    G     + A     LE   
Sbjct: 104 PVPARARLARARIGV--VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR 161

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           L   A  +   LS G ++RL LAR L  D  + +LDEP+  LD     L+   +     +
Sbjct: 162 LESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 221

Query: 188 GGIVIVATHL 197
           G  +++ TH 
Sbjct: 222 GKTILLTTHF 231

Length = 340

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 28/213 (13%)

Query: 6   PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-----S 60
           P   +  +  ++      Q L+++N+ +H+     L G +G GKSTFLR           
Sbjct: 12  PTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPG 71

Query: 61  KPSAGEILW---NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW--------- 108
               GEI+    N + ++      + +++++ +  K     K ++ +NV +         
Sbjct: 72  NHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKR 130

Query: 109 FEVLEGKQGNSLPALELMG-----LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
             +LE +  N+L    L       LG LA      LS GQ++RL +AR LA D  I L D
Sbjct: 131 RSILEERVENALRNAALWDEVKDRLGDLAFN----LSGGQQQRLCIARALATDPEILLFD 186

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           EP+ ALD      +E +I++ + K  I+IV TH
Sbjct: 187 EPTSALDPIATASIEELISDLKNKVTILIV-TH 218

Length = 265

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.0 bits (137), Expect = 8e-10
 Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 19/197 (9%)

Query: 15  NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNG 71
           N++     +Q L  +N+ I       L G +G GKSTFLR     +   A   G +   G
Sbjct: 7   NLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG 66

Query: 72  HDI-TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS-------LPAL 123
            D+  Q  +  +  + + +      VK   ++ +N+ +   L G   N        +  L
Sbjct: 67  KDVKNQDVVALRKNVGMVFQQPNVFVK---SIYENISYAPKLHGMIKNKDEEEALVVDCL 123

Query: 124 ELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY 179
           + +GL    K+K    A  LS GQ++RL +AR LAI   + LLDEP+ ALD     ++E 
Sbjct: 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183

Query: 180 IIAEHRKKGGIVIVATH 196
           ++ E      +++V TH
Sbjct: 184 LLKELSHNLSMIMV-TH 199

Length = 246

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 41/209 (19%)

Query: 13  LKNVSCMRNAQQ---ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           +KN++      Q    L  V+  +  G  L + G NGSGKST +R++ G  +  +G+I+ 
Sbjct: 7   VKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIII 66

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKF----------TVLDNVQWFEVLEGKQGNS 119
           +G  +T+  +         W  ++  +   F          TV D+V +     G +   
Sbjct: 67  DGDLLTEENV---------W-DIRHKIGMVFQNPDNQFVGATVEDDVAF-----GLENKG 111

Query: 120 LP----------ALELMGLGRLA-KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
           +P          ALEL+G+     +E AR LS GQ++R+ +A  +A+   I +LDE +  
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKEREPAR-LSGGQKQRVAIAGAVAMRPKIIILDEATSM 170

Query: 169 LDYDGVRLLEYIIAEHRKKGGI-VIVATH 196
           LD +G   L   I   R    + VI  TH
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITH 199

Length = 279

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 39/205 (19%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           +IL+ +++S   G  + + G NG+GKST LR++AG  K   GE       I   G   Q 
Sbjct: 19  EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA-RPAPGIK-VGYLPQ- 75

Query: 84  KLQLN-----WLSLKDAVKEKFTVLD-----NVQW------FEVLEGKQG---NSLPALE 124
           + QL+       ++++ V E    LD     + ++       + L  +Q      + A +
Sbjct: 76  EPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAAD 135

Query: 125 LMGLGR---LAKEKARM---------LSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDY 171
              L R   +A +  R          LS G+R+R+ L RLL + +P + LLDEP+  LD 
Sbjct: 136 AWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL-LSKPDMLLLDEPTNHLDA 194

Query: 172 DGVRLLEYIIAEHRKKGGIVIVATH 196
           + V  LE  + E+    G V+  TH
Sbjct: 195 ESVAWLEQHLQEYP---GTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 56/213 (26%), Positives = 91/213 (42%), Gaps = 49/213 (23%)

Query: 6   PPLPRL-----LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS 60
           PP PRL       +N+S     + ++  ++  +  GG + + G NG+GKST  RM+ G  
Sbjct: 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE 372

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
           +P +G I     +  +     Q          +DA+    TV     W E+  G      
Sbjct: 373 QPDSGTIKIG--ETVKLAYVDQS---------RDALDPNKTV-----WEEISGG------ 410

Query: 121 PALELMGLGRLA-----------------KEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
             L+++ LG+                   ++K   LS G+R R+ LA+ L     + LLD
Sbjct: 411 --LDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD 468

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           EP+  LD + +R LE  + E     G  +V +H
Sbjct: 469 EPTNDLDVETLRALEEALLEF---AGCAVVISH 498

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 32/206 (15%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEIL 68
            +V       + L+ +++  +      L G +G GKST+LR L   +   P     G + 
Sbjct: 9   SDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVS 68

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKE--------KFTVLDNVQWFEVLEGKQGNSL 120
             G +I        Y    + + L+  V           F++ +NV +   L G +  ++
Sbjct: 69  LRGQNI--------YAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAV 120

Query: 121 ------PALELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                  +L+   +    K+     A  LS GQ++R+ +AR+LA+   + LLDEP+ ALD
Sbjct: 121 LDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
                 +E ++ E R +  I++V TH
Sbjct: 181 PISSTQIENMLLELRDQYTIILV-TH 205

Length = 252

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 51/189 (26%), Positives = 92/189 (48%), Gaps = 31/189 (16%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--------QS 77
           L +VN+ +       L G NG+GKST L+ L G  +  +G IL+ G +I         ++
Sbjct: 14  LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73

Query: 78  GI--FHQYKLQLNWLSLKDAVKEKFTVLDNVQW--------FEVLEGKQGNSLPAL-ELM 126
           GI   HQ   +LN       V ++ +V+DN+ W          V + K      A+ + +
Sbjct: 74  GISMVHQ---ELN------LVLQR-SVMDNM-WLGRYPTKGMFVDQDKMYRDTKAIFDEL 122

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
            +    + K   LS+ Q + +++A+  + +  I ++DEP+ +L    V  L  II + ++
Sbjct: 123 DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182

Query: 187 KG-GIVIVA 194
           +G GIV ++
Sbjct: 183 RGCGIVYIS 191

Length = 491

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 61/211 (28%), Positives = 94/211 (44%), Gaps = 32/211 (15%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PS--- 63
           P ++ KN S      + ++ VN  I       + G +G GKSTFLR +   +   PS   
Sbjct: 38  PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT 97

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG- 114
            G ++++G DI        Y    + + L+  +   F        ++ DN+ +   L G 
Sbjct: 98  TGALMFDGEDI--------YGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGI 149

Query: 115 KQGNSLPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
                L  +    L + A          + A  LS GQ++RL +AR LA++  I LLDEP
Sbjct: 150 NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEP 209

Query: 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           + ALD      +E +I E R    I+IV TH
Sbjct: 210 TSALDPKATAKIEDLIQELRGSYTIMIV-TH 239

Length = 286

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 37/223 (16%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRM-------LAGFS 60
            P + ++N S     ++ +++V + I       + G +G GK+T LR        + GF 
Sbjct: 1   EPIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60

Query: 61  KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVL 112
               G+I + G DI        Y  QL+    +  V   F        ++ DNV +   +
Sbjct: 61  --VEGKIYFKGQDI--------YDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRI 110

Query: 113 EG-KQGNSLPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLL 162
            G K  + L  +    L + A          +    LS GQ++RL +AR LA++  + LL
Sbjct: 111 HGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170

Query: 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL--PIQIED 203
           DEP+ ALD    + +E ++ E  +   IVIV  ++   I+I D
Sbjct: 171 DEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIAD 213

Length = 250

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 26/200 (13%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH 81
           A + L  +++ +  G    L G  GSGKST L+ L G  +P+ G++     DI  S    
Sbjct: 18  ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG--DIVVSSTSK 75

Query: 82  QYKLQLNWLSLKDAVKEKF--------TVLDNV----QWFEVL-EGKQGNSLPALELMGL 128
           Q +++   +  K  V  +F        TVL +V    Q F +  E  +  +   LE++GL
Sbjct: 76  QKEIKP--VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGL 133

Query: 129 GRLAKEKARM-LSMGQRKRLQLARLLAIDRPIWLLDEPSVALD----YDGVRLLEYIIAE 183
                EK+   LS GQ +R+ +A +LA++  + +LDEP+  LD     + ++L E I   
Sbjct: 134 ADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI--- 190

Query: 184 HRKKGGIVIVATHLPIQIED 203
             + G  V++ THL   + D
Sbjct: 191 -HQSGQTVVLVTHLMDDVAD 209

Length = 288

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 57/194 (29%), Positives = 88/194 (45%), Gaps = 32/194 (16%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGIF 80
           L ++NI I       L G +G GKSTFLR L   +         G +++ G +I      
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNI------ 76

Query: 81  HQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG-KQGNSLPALELMGLGRL 131
             Y    + L L+  +   F        ++ DN+ +   + G K    L  +    L + 
Sbjct: 77  --YSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKS 134

Query: 132 A-----KEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
           A     K+K    A  LS GQ++RL +AR LAI+  + L+DEP+ ALD      +E +I 
Sbjct: 135 ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194

Query: 183 EHRKKGGIVIVATH 196
             ++   I+IV TH
Sbjct: 195 NLKESYTIIIV-TH 207

Length = 254

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 20/153 (13%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +L+++N+ I  G  L +TG+ GSGK++ L ++ G  +PS G+I  +G           + 
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRI--------SFS 103

Query: 85  LQLNWLSLKDAVKEK--FTV-LDNVQWFEVLEGKQGN----SLPALELMGLGRLAKEKAR 137
            Q +W+ +   +KE   F V  D  ++  V++  Q        P  +   LG    E   
Sbjct: 104 SQFSWI-MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLG----EGGI 158

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            LS GQR R+ LAR +  D  ++LLD P   LD
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 39/181 (21%)

Query: 11  LLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           L L+ V        Q+++ +++ + DG  +VL G +G GKST LRM+AG  + ++GEI  
Sbjct: 4   LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63

Query: 70  NGHDITQ-----SGI---FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
            G  + +       I   F  Y           A+    +V +N+ +     G +   +P
Sbjct: 64  GGRVVNELEPADRDIAMVFQNY-----------ALYPHMSVRENMAY-----GLKIRGMP 107

Query: 122 ----------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR-P-IWLLDEPSVAL 169
                     A  ++ L  L   K R LS GQR+R+ + R  AI R P ++L DEP   L
Sbjct: 108 KAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGR--AIVREPAVFLFDEPLSNL 165

Query: 170 D 170
           D
Sbjct: 166 D 166

Length = 356

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 52/201 (25%), Positives = 89/201 (44%), Gaps = 44/201 (21%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
            A   L+ V+ S+++G  + + G NGSGKST  ++L G   P AG I   G  +++  + 
Sbjct: 18  AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV- 76

Query: 81  HQYKLQLNWLSLKDAVKEKF--------------TVLDNVQWFEVLEGKQGNSLP----- 121
                   W      V+ +               TV D+V +     G +   +P     
Sbjct: 77  --------W-----DVRRQVGMVFQNPDNQFVGATVQDDVAF-----GLENIGVPREEMV 118

Query: 122 -----ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
                AL  +G+      +   LS GQ++R+ +A +LA+   I +LDE +  LD  G R 
Sbjct: 119 ERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178

Query: 177 LEYIIAEHRKKGGI-VIVATH 196
           +   + + +++ GI V+  TH
Sbjct: 179 VLETVRQLKEQKGITVLSITH 199

Length = 279

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 46/195 (23%), Positives = 91/195 (46%), Gaps = 24/195 (12%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG---FSKPSAGEILWNGHDITQ 76
               +IL  V++ +  G  + + G++GSGK+T L  ++G       ++G+IL+NG     
Sbjct: 17  NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76

Query: 77  SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQGNSLP-------ALELMG 127
                Q++  + ++   D +    TV + + +  +L    K  +++         L  + 
Sbjct: 77  ----DQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLA 132

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD----YDGVRLLEYIIAE 183
           L R+     + +S G+R+R+ +A  L  D  + +LDEP+  LD     + V  L    ++
Sbjct: 133 LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL----SQ 188

Query: 184 HRKKGGIVIVATHLP 198
             ++  IVI+  H P
Sbjct: 189 LARRNRIVILTIHQP 203

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 35/209 (16%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEI 67
           L+ ++        ++ V++   +     + G +G GKST LR +       PSA   G+I
Sbjct: 7   LEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF---------TVLDNVQWFEVLEGKQGN 118
           L +  DI   G+        + +S++  V   F         ++ DNV     L G+   
Sbjct: 67  LLDDTDIYDRGV--------DPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR 118

Query: 119 SLPALELM--GLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
           S  A E++   L R+A         K  A  LS GQ++RL +AR +A+   + L+DEP+ 
Sbjct: 119 S-EADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPAS 177

Query: 168 ALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           ALD      +E +I E ++K  I+IV TH
Sbjct: 178 ALDPISTLKIEELIEELKEKYTIIIV-TH 205

Length = 252

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 26/182 (14%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +LR V++S+  G   V+ G  GSGKST L+ L    + S G + W    I        Y 
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA-------YV 726

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWF---------EVLEGKQGNSLPALELMGLGRLAKEK 135
            Q  W+          TV  N+ +F         + +   Q  +  A    GL     EK
Sbjct: 727 PQQAWIM-------NATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEK 779

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVA 194
              LS GQ+ R+ LAR +  +R ++LLD+P  ALD + G R++E         G   ++A
Sbjct: 780 GVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLA 838

Query: 195 TH 196
           TH
Sbjct: 839 TH 840

Length = 1560

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 61/238 (25%)

Query: 10  RLLLKNVSCMRNAQQIL-RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
            + L+N+S      Q L   +N  +  G  L++TG +G+GK++ LR LAG         L
Sbjct: 392 GITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAG---------L 442

Query: 69  W----------NGHDITQSGIFHQYKLQLNWLSLKDAV-----KEKFTVLDNVQWFEVLE 113
           W              +    +F   +  L   +L++A+        F+  + V       
Sbjct: 443 WPWGSGRISMPADSAL----LFLPQRPYLPQGTLREALCYPNAAPDFSDAELVA------ 492

Query: 114 GKQGNSLPALELMGLGRLA---KEKAR---MLSMGQRKRLQLARLLAIDRPIWL-LDEPS 166
                    L  +GLG LA    E+ R   +LS G+++RL  ARLL + +P W+ LDE +
Sbjct: 493 --------VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLL-LHKPKWVFLDEAT 543

Query: 167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLVDMLD 224
            ALD +    L Y + +       VI   H P          L     R++ L+D   
Sbjct: 544 SALDEETEDRL-YQLLKEELPDATVISVGHRP---------TLWNFHSRQLELLDDAG 591

Length = 604

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 38/202 (18%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRML--AGF-SKPSAGE 66
           +L ++N+       +I              ++ G NG+GK+T +  L  A     P   +
Sbjct: 3   KLSIRNIRSFHERSEIE-------FFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNSK 55

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPA 122
              +   + + G   + + Q+  L+ ++A  +K+T+    +   +LE      QG S   
Sbjct: 56  GGAHDPKLIREG---EVRAQVK-LAFENANGKKYTI---TRSLAILENVIFCHQGESNWP 108

Query: 123 LELMGLGRLAKEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
           L  M  GR         S G++       RL LA     +  I  LDEP+  LD + +  
Sbjct: 109 LLDM-RGR--------CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEE 159

Query: 177 -LEYIIAEHRKKGGI-VIVATH 196
            L  II E + +    +IV TH
Sbjct: 160 SLAEIIEERKSQKNFQLIVITH 181

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.4 bits (133), Expect = 3e-09
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--- 64
           +P + +K++S   N  + +  +++ I+      + G +G GKSTF++ L   S+      
Sbjct: 5   IPAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64

Query: 65  --GEILWNGHDITQSGI-FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
             G + + G +I    I  ++ + Q+  +  +       ++ +NV +   +  K    LP
Sbjct: 65  VEGVVDFFGQNIYDPRININRLRRQIG-MVFQRPNPFPMSIYENVAYGVRISAK----LP 119

Query: 122 ALEL----------MGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
             +L            L +  K+K    A  LS GQ++RL +AR LAI   + L+DEP  
Sbjct: 120 QADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179

Query: 168 ALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           ALD      +E +I   R +  I IV TH
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIV-TH 207

Length = 259

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 32/211 (15%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--- 65
           P++ ++ V+   +  Q+L+++N+   +     + G +G GKST LR L   +   +G   
Sbjct: 3   PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62

Query: 66  --EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGK 115
              +L +  +I        Y   L+ ++L+  V   F        ++ DNV +   + G 
Sbjct: 63  EGAVLLDNENI--------YSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGT 114

Query: 116 QGNSL------PALELMGLGRLAKE---KARM-LSMGQRKRLQLARLLAIDRPIWLLDEP 165
              S        +L    L    K+   K+ + LS GQ++RL +AR+LAI+  + L+DEP
Sbjct: 115 TAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEP 174

Query: 166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
             ALD      +E ++ E ++   I IV TH
Sbjct: 175 CSALDPVSTMRIEELMQELKQNYTIAIV-TH 204

Length = 251

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 54.9 bits (132), Expect = 4e-09
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L    VS      Q L  V++ I+ G  + L G NG+GK+T L  L G  + ++G I+
Sbjct: 4   VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL 128
           ++G DIT        +  +  +     V  + TV +N+        +         +  L
Sbjct: 64  FDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL 123

Query: 129 -GRLAK---EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169
             RL +   ++A  +S G+++ L + R L     + LLDEPS+ L
Sbjct: 124 FPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168

Length = 237

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 55.0 bits (133), Expect = 4e-09
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 26/170 (15%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
             ++ L  +++ I +G  + + G+NG+GKST L  +AG  KP++G+IL +G D+T+  + 
Sbjct: 17  LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA 76

Query: 81  HQYKLQLNWLS-----LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----------LE 124
            +  L    L+            + T+ +N+   E    K+G S              L 
Sbjct: 77  KRANL----LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132

Query: 125 LMGLGRLAKEKARM--LSMGQRKRLQLARLLAIDRP--IWLLDEPSVALD 170
            +GLG   +   R+  LS GQR+ L L  L+A   P  I LLDE + ALD
Sbjct: 133 RLGLGLENRLSDRIGLLSGGQRQALSL--LMATLHPPKILLLDEHTAALD 180

Length = 263

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +L  +N S+  G  + L G +GSGKST LR+L        G+I   G  +      +   
Sbjct: 15  VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74

Query: 85  LQLNWLSLKDAVKEKF-------------TVLDNVQWFEVL------EGKQGNSLPALEL 125
           +  +   L+  ++ K              TVLDNV    VL         +  ++  L++
Sbjct: 75  VPADEKHLR-QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDM 133

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +GL   A      LS GQ++R+ +AR LA+   + L DE + ALD
Sbjct: 134 VGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALD 178

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 32/193 (16%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEILWNGHDITQSGIF 80
           L  V++ I     +   G +G GKST LR     +   P A   G +L+   +I      
Sbjct: 36  LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI------ 89

Query: 81  HQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
             Y  Q+N + L+  V   F        ++ +N+ +     G +GN L  L    L R A
Sbjct: 90  --YDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGN-LDELVEDSLRRAA 146

Query: 133 ---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
                    KEK   LS GQ++RL +AR +A+   + L+DEP  ALD    R +E +  E
Sbjct: 147 IWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206

Query: 184 HRKKGGIVIVATH 196
            +++  I++V TH
Sbjct: 207 LKEQYTIIMV-TH 218

Length = 274

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 54.3 bits (131), Expect = 1e-08
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 10/148 (6%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI--TQSGIF---HQY 83
            N ++   G   L G +GSGK++ + M+AG ++P  G I  NG  +   + GIF    + 
Sbjct: 17  ANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKR 76

Query: 84  KLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG 142
           ++       +DA +   +TV  N++ + + +  +      + L+G+  L       LS G
Sbjct: 77  RIG---YVFQDARLFPHYTVRGNLR-YGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGG 132

Query: 143 QRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +++R+ + R L     + L+DEP  +LD
Sbjct: 133 EKQRVAIGRALLTAPELLLMDEPLASLD 160

Length = 352

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 44/195 (22%), Positives = 82/195 (42%), Gaps = 37/195 (18%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P L ++ +S     +  +R V+  +  G  + + G  G+G++     L G   P++GEI 
Sbjct: 3   PVLEVRGLSV----KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN----SLPALE 124
            +G  +T               S +DA++             V E ++       L   E
Sbjct: 59  LDGKPVT-------------RRSPRDAIRAGI--------AYVPEDRKREGLVLDLSVAE 97

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
            + L  L       LS G ++++ LAR LA D  + +LDEP+  +D      +  +I E 
Sbjct: 98  NIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150

Query: 185 RKKG-GIVIVATHLP 198
              G  ++++++ L 
Sbjct: 151 ADAGKAVLLISSELD 165

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 54/214 (25%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-----SKPSAGEILWNGHDITQS 77
              L+ V++ I +     L G +G GKSTFLR L        +    G +  +G DI Q 
Sbjct: 58  DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD 117

Query: 78  GIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG--KQGNSLPALELMG 127
           G+        N + L+  V   F        ++ +N+ +     G  K G+    L    
Sbjct: 118 GV--------NLVELRKRVGMVFQSPNPFPKSIRENISY-----GPRKHGDINTGLLARL 164

Query: 128 LGRLAKEK-------------------------ARMLSMGQRKRLQLARLLAIDRPIWLL 162
           LGR  K+                          A  LS GQ++RL +AR LA+D  + L+
Sbjct: 165 LGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILM 224

Query: 163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           DEP+ ALD      +E +I E  ++  +V+V TH
Sbjct: 225 DEPASALDPIATSKIEDLIEELAEEYTVVVV-TH 257

Length = 305

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 44/185 (23%)

Query: 41  LTGTNGSGKSTFLRMLAGFSKPSA-----GEILWNGHDITQSGIFHQYKLQLN------- 88
           L G +GSGKST+LR L   +         G+IL+ G DI +  I + Y+++ +       
Sbjct: 51  LIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI-NVYEMRKHIGMVFQR 109

Query: 89  ------------WLSLK-DAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK 135
                         +L+   VK+K  VLD     E++E        +L+   L    K+ 
Sbjct: 110 PNPFAKSIYENITFALERAGVKDK-KVLD-----EIVE-------TSLKQAALWDQVKDD 156

Query: 136 ----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
               A  LS GQ++RL +AR +A+   I L+DEP+ ALD      LE  + E +K   I+
Sbjct: 157 LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTII 216

Query: 192 IVATH 196
           IV TH
Sbjct: 217 IV-TH 220

Length = 267

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 11/177 (6%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           +   +L++V+  +  G  + + G  G+GKST +  L  F +   G+I  +G DI+   + 
Sbjct: 19  DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL- 77

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLS 140
              +  L  +  +D      T+  N+  F        +     E+ G  R+  E    LS
Sbjct: 78  EDLRSSLTIIP-QDPTLFSGTIRSNLDPF--------DEYSDEEIYGALRV-SEGGLNLS 127

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
            GQR+ L LAR L     + +LDE + ++DY    L++  I E      I+ +A  L
Sbjct: 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRL 184

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 61/212 (28%), Positives = 93/212 (43%), Gaps = 34/212 (16%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PS 63
             L ++N++     +Q L  +++ I         G +G GKST LR     +        
Sbjct: 24  TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG- 114
            GEI  +G +I        Y  +++   L+  V   F        ++ +NV +   L+G 
Sbjct: 84  EGEIRLDGQNI--------YDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGI 135

Query: 115 KQGNSLP-----ALELMGL-----GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164
                L      +L    L      RL  E A  LS GQ++RL +AR +AI+  + LLDE
Sbjct: 136 NNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194

Query: 165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           P+ ALD      +E +I E + K  IVIV TH
Sbjct: 195 PTSALDPISTLKIEELITELKSKYTIVIV-TH 225

Length = 272

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 38/173 (21%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           N+ Q +  V+     G  + + G  G+GK+T + +L     P+ G+IL +G DI      
Sbjct: 346 NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT---- 401

Query: 81  HQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNSLPAL--------- 123
                 +   SL+ ++   F        ++ +N++      G++G +   +         
Sbjct: 402 ------VTRESLRKSIATVFQDAGLFNRSIRENIRL-----GREGATDEEVYEAAKAAAA 450

Query: 124 ------ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                    G   L  E+   LS G+R+RL +AR +  + PI +LDE + ALD
Sbjct: 451 HDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALD 503

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 9/172 (5%)

Query: 31   ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFHQYKLQLNW 89
            + +  G    L G NG+GK+T  +ML G +  ++G+    G  I T     HQ    + +
Sbjct: 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQ---NMGY 2016

Query: 90   LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEKARMLSMGQR 144
                DA+ +  T  +++  +  L G     +      +++ +GL   A   A   S G +
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNK 2076

Query: 145  KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            ++L  A  L    P+ LLDEP+  +D    R+L   I    ++G  V++ +H
Sbjct: 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 52.8 bits (127), Expect = 3e-08
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 25/187 (13%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  VN+ +  G  LV+ G NGSGKST  + +     PS G++  +G D +          
Sbjct: 26  LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEE------- 78

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLE-----GKQGNSLP----------ALELMGLGR 130
             N   +++     F   DN     ++E     G +   +P          +L+ +G+  
Sbjct: 79  --NLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYE 136

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
             +    +LS GQ++R+ +A +LA+     + DEP+  LD  G R +   I E  KK GI
Sbjct: 137 YRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGI 196

Query: 191 -VIVATH 196
            +I+ TH
Sbjct: 197 TIILITH 203

Length = 280

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 55/203 (27%), Positives = 93/203 (45%), Gaps = 19/203 (9%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG---- 65
           +  ++N+       Q L+ +N+ I       L G +G GKST LR L   +    G    
Sbjct: 3   KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT 62

Query: 66  -EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW---------FEVLEGK 115
            ++  +G DI  +      ++++  +  +       ++ +NV +          +VL+  
Sbjct: 63  GKLTMDGEDIYGNIDVADLRIKVG-MVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV 121

Query: 116 QGNSLPALELMG--LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
              SL    L      RL K  A  LS GQ++RL +AR +A++  + L+DEP+ ALD   
Sbjct: 122 VERSLRGAALWDEVKDRL-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180

Query: 174 VRLLEYIIAEHRKKGGIVIVATH 196
              +E ++ E +K   IVIV TH
Sbjct: 181 THKIEELMEELKKNYTIVIV-TH 202

Length = 249

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 58/206 (28%), Positives = 94/206 (45%), Gaps = 32/206 (15%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEIL 68
           KN++     +  L  + ISI       L G +G GKST LR     +   P     G+IL
Sbjct: 10  KNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDIL 69

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEG-KQGNS 119
           +NG +I  SG         + ++L+  +   F        ++ +NV +   + G K   +
Sbjct: 70  YNGENIMDSG--------ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT 121

Query: 120 LPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L  +    L   A          + A  LS GQ++RL +AR LA++  + L+DEP  ALD
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
                 +E +I + +K+  ++IV TH
Sbjct: 182 PIATAKIEDLIEDLKKEYTVIIV-TH 206

Length = 253

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 52.1 bits (125), Expect = 4e-08
 Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 32/206 (15%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEI 67
           L+NV+      + +++V   I  G    L G +G GKST LR L   +         G +
Sbjct: 16  LQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV 75

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNS 119
           L++G D+        Y  +++ + ++  +   F        ++ +N+ +   + G  G+ 
Sbjct: 76  LFDGTDL--------YDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGD- 126

Query: 120 LPALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +  L    L + A          E    LS GQ++RL +AR +AI+  + L+DEP  ALD
Sbjct: 127 MDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
                 +E  + E +K   IVIV TH
Sbjct: 187 PISTLKIEETMHELKKNFTIVIV-TH 211

Length = 269

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 56/192 (29%), Positives = 87/192 (45%), Gaps = 33/192 (17%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--PSA---GEILWNGHDITQSGIFHQY 83
           VN++I         G +G GKST LR L    +  P A   GE+L +G D+   G+    
Sbjct: 23  VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV---- 78

Query: 84  KLQLNWLSLKDAVKEKF---------TVLDNVQWFEVLEGKQGNS----LPALELMGLGR 130
               + ++++  +   F         ++ DNV     L G +       L    L G   
Sbjct: 79  ----DPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANL 134

Query: 131 LAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
             + K R+      LS GQ++RL +AR +A++  + L+DEP  ALD      +E +I E 
Sbjct: 135 WNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194

Query: 185 RKKGGIVIVATH 196
           ++   IVIV TH
Sbjct: 195 KQDYTIVIV-TH 205

Length = 258

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 22/185 (11%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
           ++ ++ +G  L + G NGSGKST  +MLAG  +P++GE+L + H +      + Y+ Q  
Sbjct: 32  LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD--YSYRSQRI 89

Query: 89  WLSLKDAVKEKFTVLDNVQWFEVL-------------EGKQGNSLPALELMGLGR-LAKE 134
            +  +D      T L+  Q    +             E ++   +  L  +GL    A  
Sbjct: 90  RMIFQDPS----TSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY 145

Query: 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI--VI 192
              ML+ GQ++RL LAR L +   + + DE   +LD      L  ++ E ++K GI  + 
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205

Query: 193 VATHL 197
           V  HL
Sbjct: 206 VTQHL 210

Length = 267

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 53/205 (25%), Positives = 94/205 (45%), Gaps = 32/205 (15%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-----SKPSAGEIL 68
           ++++     +Q L  V++ I +     + G +G GKSTFLR +        +    GE+ 
Sbjct: 43  RDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELT 102

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNVQWFEVLEGKQGNSL 120
           + G ++        Y   ++ ++L+  +   F        ++ DNV +   ++G  G+  
Sbjct: 103 FRGKNV--------YDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154

Query: 121 PALELMGLGRLA---------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
             +E   L R A               LS GQ++RL +AR +A D  + L+DEP+ ALD 
Sbjct: 155 ERVE-ESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDP 213

Query: 172 DGVRLLEYIIAEHRKKGGIVIVATH 196
                +E +I E  ++  +VIV TH
Sbjct: 214 VATSKIEDLIEELAEEYTVVIV-TH 237

Length = 285

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 51.7 bits (124), Expect = 6e-08
 Identities = 52/219 (23%), Positives = 100/219 (45%), Gaps = 51/219 (23%)

Query: 17  SCMRNAQQILRHVNISIHDGGALVLT---------------GTNGSGKSTFLR------- 54
           S +   + +LR  N++++ G  L +                G +G GKST LR       
Sbjct: 2   STLNGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61

Query: 55  MLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF--------TVLDNV 106
           ++ GF     G++ ++G ++        Y   ++ + ++  +   F        ++ DN+
Sbjct: 62  LIPGFR--VEGKVTFHGKNL--------YAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNI 111

Query: 107 QWFEVLEGKQGNSLPALELMGLGRLA-----KEKARM----LSMGQRKRLQLARLLAIDR 157
            +   + G +G+ +  L    L + A     K+K +     LS GQ++RL +AR +A+  
Sbjct: 112 AYGARINGYKGD-MDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQP 170

Query: 158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            + L+DEP  ALD      +E ++ E +++  I+IV TH
Sbjct: 171 EVILMDEPCSALDPISTLRIEELMHELKEQYTIIIV-TH 208

Length = 264

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 31/174 (17%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTF----LRMLA--GFSKPSAGEILWNGHDIT 75
             + ++ ++  I  G  L L G +GSGKS      L +L     + PS G IL++G D+ 
Sbjct: 22  TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS-GSILFDGEDL- 79

Query: 76  QSGIFHQYKLQLNWLSLKD---AVKEKFTVLDNV-----QWFEVLEGKQGNSLPA----- 122
                   + QL  +         +E  T L+ +     Q  EVL   +G S  A     
Sbjct: 80  ----LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARA 135

Query: 123 LELMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           LEL+ L  + + + R+      LS GQR+R+ +A  LA +  + + DEP+ ALD
Sbjct: 136 LELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189

Length = 534

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 52.2 bits (125), Expect = 8e-08
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 20/153 (13%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +L++++  +  G  L + G+ GSGKS+ L M+ G  +PS G+I  +G           + 
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRI--------SFS 492

Query: 85  LQLNWL---SLKDAVKEKFTVLDNVQWFEVLEGKQGNS----LPALELMGLGRLAKEKAR 137
            Q +W+   ++KD +    +  D  ++  V++  Q        P  +   LG    E   
Sbjct: 493 PQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLG----EGGI 547

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            LS GQR R+ LAR +  D  ++LLD P   LD
Sbjct: 548 TLSGGQRARISLARAVYKDADLYLLDSPFTHLD 580

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 51.2 bits (122), Expect = 8e-08
 Identities = 51/186 (27%), Positives = 85/186 (45%), Gaps = 18/186 (9%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLR-------MLAGFSKPSAGEILWNGHDITQSG 78
           +R  ++ I         G +G GKST LR       ++ GF     G + + G D+   G
Sbjct: 24  VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFR--FEGHVHFLGQDVYGKG 81

Query: 79  IFHQYKLQLNWLSLKDAVKEKFTVLDNVQW---FEVLEGKQGNSLP-ALELMGLGRLAKE 134
           +      +   +  +       ++ DNV +       +G  G+ +  AL+   L    K+
Sbjct: 82  VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD 141

Query: 135 KARM----LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
           K ++    LS GQ++RL +AR +A +  + LLDEP  ALD    R +E ++ E +K   I
Sbjct: 142 KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTI 201

Query: 191 VIVATH 196
            +V TH
Sbjct: 202 ALV-TH 206

Length = 261

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 51.5 bits (124), Expect = 9e-08
 Identities = 47/183 (25%), Positives = 92/183 (50%), Gaps = 24/183 (13%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------- 78
           L    ++++ G  + L G NG+GKST +++L G     AG IL+ G ++T +G       
Sbjct: 20  LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79

Query: 79  ---IFHQYKLQLNW---LSLKDAV---KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG 129
              I HQ   +LN    L++ + +   +E       + W ++    + + L  L  + L 
Sbjct: 80  GIGIIHQ---ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA--EADKL--LARLNLR 132

Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG- 188
             + +    LS+G+++ +++A++L+ +  + ++DEP+ AL       L  +I E + +G 
Sbjct: 133 FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGR 192

Query: 189 GIV 191
           GIV
Sbjct: 193 GIV 195

Length = 501

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 53/190 (27%), Positives = 92/190 (48%), Gaps = 19/190 (10%)

Query: 6    PPLPRLLLKNVSCMRNAQQ---ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP 62
            PP  R+  +N  C+R  +    +LRH+N++IH G  + + G  G+GKS+    L   ++ 
Sbjct: 1280 PPRGRVEFRNY-CLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338

Query: 63   SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA 122
            + GEI+ +G +I + G+ H  + ++  +  +D V    ++  N+  F     ++     A
Sbjct: 1339 AEGEIIIDGLNIAKIGL-HDLRFKITIIP-QDPVLFSGSLRMNLDPFSQYSDEE--VWWA 1394

Query: 123  LELM-----------GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
            LEL             L     E    LS+GQR+ + LAR L     I +LDE + A+D 
Sbjct: 1395 LELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDL 1454

Query: 172  DGVRLLEYII 181
            +   L++  I
Sbjct: 1455 ETDNLIQSTI 1464

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 41/197 (20%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            L  ++ SI  G    L G NGSGKST  +++ G   P           IT  GI     
Sbjct: 22  ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN----PNSKITVDGI----- 72

Query: 85  LQLNWLSLKDAVKEKF--------------TVLDNVQWFEVLEGKQGNSLP--------- 121
             L   ++ D ++EK               TV D+V +     G +  ++P         
Sbjct: 73  -TLTAKTVWD-IREKVGIVFQNPDNQFVGATVGDDVAF-----GLENRAVPRPEMIKIVR 125

Query: 122 -ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEY 179
             L  +G+      +   LS GQ++R+ +A +LA++  I +LDE +  LD  G  ++L+ 
Sbjct: 126 DVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKL 185

Query: 180 IIAEHRKKGGIVIVATH 196
           I    +K    VI  TH
Sbjct: 186 IRKLKKKNNLTVISITH 202

Length = 282

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 49.6 bits (118), Expect = 2e-07
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 31/180 (17%)

Query: 14  KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEIL 68
           K+V       + L  +++   +     L G +G GKSTFLR L   +         GEI 
Sbjct: 8   KDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK 67

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKE--------KFTVLDNVQWFEVLEGKQGNSL 120
           + G +I        Y  +++ + L+  V           F+V DNV +   + G +   L
Sbjct: 68  FEGQNI--------YGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKEL 119

Query: 121 ------PALELMGLGRLAKEK----ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                  +L+   + +  K+     A+  S GQ++R+ +AR LA+   + LLDEP+ ALD
Sbjct: 120 IDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179

Length = 251

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 46/212 (21%), Positives = 88/212 (41%), Gaps = 38/212 (17%)

Query: 7   PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
             P L  +++S   +  ++L+ ++ ++H G    L G NG+GKST ++++AG   P +G 
Sbjct: 8   APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGT 67

Query: 67  ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM 126
           +   G+   +      ++L +  +  +  +    +V +N+                  L 
Sbjct: 68  LEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENI------------------LF 109

Query: 127 GLGRLAKEKARM-------------------LSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
           GL +      +M                   L +  R+ +++ R L  D  I +LDEP+ 
Sbjct: 110 GLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA 169

Query: 168 ALDYDGVRLLEYIIAEHRKKG-GIVIVATHLP 198
           +L       L   I E   +G GIV ++  LP
Sbjct: 170 SLTPAETERLFSRIRELLAQGVGIVFISHKLP 201

Length = 510

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 54/162 (33%), Positives = 79/162 (48%), Gaps = 24/162 (14%)

Query: 25   ILRHVNISIHDGGALVLTGTNGSGKS----TFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
            +LR V+  I     + + G  GSGKS    TF+RM+    +   GEI  NG +I   G+ 
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVNGREIGAYGL- 1379

Query: 81   HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-GRLAKEK---- 135
             + + Q + +  +D V    TV  NV  F  LE        ALEL+GL  R+A E     
Sbjct: 1380 RELRRQFSMIP-QDPVLFDGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGID 1436

Query: 136  ARML------SMGQRKRLQLAR-LLAIDRPIWLLDEPSVALD 170
            +R+L      S+GQR+ + +AR LL       L+DE +  +D
Sbjct: 1437 SRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANID 1478

Length = 1560

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS--GIF---HQ- 82
            + ++   G   + G +GSGK+T +R++AG ++P  GEI+ NG  +  S  GIF    + 
Sbjct: 16  ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKR 75

Query: 83  ---YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARML 139
              Y  Q   L    +V+     L           ++ +    +EL+G+G L       L
Sbjct: 76  RIGYVFQEARLFPHLSVRGN---LRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRL 132

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           S G+++R+ + R L     + L+DEP  ALD
Sbjct: 133 SGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--AGEILWNGHDITQSGIFHQ 82
           IL  V      G  L + G +GSGKST L  LAG  + +   G IL N    T+     Q
Sbjct: 83  ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-----Q 137

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-----GKQGNSLPA---LELMGLGR---- 130
              +  +++  D +    TV + + +  +L       KQ   L A   +  +GL +    
Sbjct: 138 ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENT 197

Query: 131 -LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
            +     R +S G+RKR+ +A  + I+  + +LDEP+  LD      L   +    +KG 
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGK 257

Query: 190 IVIVATHLP 198
            ++ + H P
Sbjct: 258 TIVTSMHQP 266

Length = 659

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 17/176 (9%)

Query: 2   TLRKP---PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG 58
           + R P   P P L ++ VS     + IL  + +++  G  + L G NG+GKST +++LAG
Sbjct: 301 SFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAG 360

Query: 59  FSKPSAGEI-LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG 117
              P +GEI L  G    + G F Q+  QL +L   ++  +    L      + LE K  
Sbjct: 361 ELAPVSGEIGLAKG---IKLGYFAQH--QLEFLRADESPLQHLARLAP----QELEQKLR 411

Query: 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYD 172
           + L      G  ++ +E  R  S G++ RL LA L+   RP + LLDEP+  LD D
Sbjct: 412 DYLGGFGFQG-DKVTEETRR-FSGGEKARLVLA-LIVWQRPNLLLLDEPTNHLDLD 464

Length = 638

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 51/191 (26%), Positives = 85/191 (44%), Gaps = 26/191 (13%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---TQS--- 77
            IL  ++ +I  G  + + G +G+GKST LR+L  F   ++G I  +G DI   TQ    
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLR 336

Query: 78  ---GI-------FHQYKLQLNWLSLKDAVK-EKFTVLDNVQWFEVLEGKQGNSLPALELM 126
              GI       F+            DA   E     +  Q  + ++     SLP     
Sbjct: 337 RAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ-----SLPEGYDT 391

Query: 127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
           G+G    E+   LS G+++R+ +AR +  + PI +LDE + ALD    + ++  + E   
Sbjct: 392 GVG----ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA 447

Query: 187 KGGIVIVATHL 197
               +++A  L
Sbjct: 448 GRTTLVIAHRL 458

Length = 497

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 36/211 (17%)

Query: 13  LKNVSCMRNAQQILRHVNIS--IHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEI 67
           L+   C    ++ L   N+S     G  L + G++G+GK+T +  LA  S      +G +
Sbjct: 27  LRGCFCRERPRKHLLK-NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV 85

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA----- 122
           L NG  I       + +    ++   D      TV +++ +   L  +    +       
Sbjct: 86  LLNGMPIDAK----EMRAISAYVQQDDLFIPTLTVREHLMFQAHL--RMPRRVTKKEKRE 139

Query: 123 -----LELMGLGRLAKEK------ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD- 170
                L+ +GL + A  +       + LS G+RKRL  A  L  D P+   DEP+  LD 
Sbjct: 140 RVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDS 199

Query: 171 ---YDGVRLLEYIIAEHRKKGGIVIVATHLP 198
              Y  V++L+ +     +KG  +I   H P
Sbjct: 200 FMAYSVVQVLKGLA----QKGKTIICTIHQP 226

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 16/204 (7%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--- 65
           P +   N++     + +L  V++         L G  GSGK+TFLR L   +   +G   
Sbjct: 20  PAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79

Query: 66  --EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV----QWFEVLEGKQGNS 119
             ++L  G  I       +++ ++  L  +       +++DNV    +  +++  K+   
Sbjct: 80  SGDVLLGGRSIFNYRDVLEFRRRVGML-FQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRG 138

Query: 120 LPALELMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
           +    L  +G     K R+      LS GQ++ L LAR LA++  + LLDEP+ ALD   
Sbjct: 139 VAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTT 198

Query: 174 VRLLEYIIAEHRKKGGIVIVATHL 197
              +E  I     +  ++IV  +L
Sbjct: 199 TEKIEEFIRSLADRLTVIIVTHNL 222

Length = 276

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 51/187 (27%), Positives = 74/187 (39%), Gaps = 47/187 (25%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG-FSKPSA-------GEILWNG 71
           R  + ILR +++ I  G    L G NG+GKST L+ LAG  +   A       G++  NG
Sbjct: 11  RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70

Query: 72  HDITQSGIFHQYKLQLNWLSLKDAVKEK-------FTVLDNVQWFEVLEGKQGNSLP--- 121
             +          +    L+   AV  +       F+  + V        ++  +L    
Sbjct: 71  EPLAA--------IDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRD 122

Query: 122 ------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW------------LLD 163
                 AL L G   L       LS G+  R+Q AR+LA    +W            LLD
Sbjct: 123 GEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLA---QLWPPHDAAQPPRYLLLD 179

Query: 164 EPSVALD 170
           EP+ ALD
Sbjct: 180 EPTAALD 186

Length = 272

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 44/216 (20%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEIL 68
           L +K++      + ILR +N+ +  G    + G NGSGKST    LAG    + + G + 
Sbjct: 2   LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVE 61

Query: 69  WNGHDITQ--------SGIF--HQYKLQLNWLSLKDAVKEKF---TVLDNVQWFEVLEGK 115
           + G D+ +         GIF   QY +++        V  +F   T L+ V+ +      
Sbjct: 62  FKGKDLLELSPEDRAGEGIFMAFQYPVEI------PGVSNQFFLQTALNAVRSYR----- 110

Query: 116 QGNSLPALELMGLGRLAKEKARMLSM---------------GQRKRLQLARLLAIDRPIW 160
                  L+      L +EK  +L M               G++KR  + ++  ++  + 
Sbjct: 111 ---GQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELC 167

Query: 161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           +LDE    LD D ++++   +   R      I+ TH
Sbjct: 168 ILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203

Length = 248

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 46.8 bits (111), Expect = 2e-06
 Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 30/184 (16%)

Query: 18  CMR---NAQQILRHVNISIHDGGALVLTGTNGSGKST----FLRMLAGFSKPSAGEILWN 70
           C+R   N + +L+HV   I  G  + + G  GSGKS+    F RM+  F     G+I+ +
Sbjct: 26  CVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFD----GKIVID 81

Query: 71  GHDITQSGIFHQYKLQLNWL---------SLKDAVKEKFTVLDNVQWFEVLEGKQ----G 117
           G DI++  + H  + +L+ +         S++  +  +    D+  W E LE  Q     
Sbjct: 82  GIDISKLPL-HTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLW-EALEIAQLKNMV 139

Query: 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177
            SLP     GL  +  E     S+GQR+   LAR       I ++DE + ++D     +L
Sbjct: 140 KSLPG----GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENIL 195

Query: 178 EYII 181
           + ++
Sbjct: 196 QKVV 199

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 29/182 (15%)

Query: 35  DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-----GIFHQYKLQLNW 89
            G  + + G NG GKST L++LAG  KP+ G      ++   S       F   +LQ N+
Sbjct: 99  PGKVVGILGPNGIGKSTALKILAGELKPNLGR-----YEDPPSWDEVIKRFRGTELQ-NY 152

Query: 90  LSLKDAVKEKFTVLDNVQWFE----VLEGKQGNSLPAL----------ELMGLGRLAKEK 135
              K   + +   +   Q+ +    V++GK G  L  +          E +GL  +    
Sbjct: 153 --FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRD 210

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKKGGIVIVA 194
              LS G+ +R+ +A  L  D  ++  DEPS  LD    RL    +I E  + G  VIV 
Sbjct: 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI-RQRLNAARVIRELAEDGKYVIVV 269

Query: 195 TH 196
            H
Sbjct: 270 EH 271

Length = 591

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 51/186 (27%), Positives = 87/186 (46%), Gaps = 36/186 (19%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQSG---- 78
           L +V++ +  G  + L G NG+GKST +++L+G   P     GEI++ G ++  S     
Sbjct: 21  LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79

Query: 79  ------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF---EVLEGKQGN----SLPALEL 125
                 I HQ +L L        VKE  +VL+N+  F   E+  G   +     L A +L
Sbjct: 80  ERAGIAIIHQ-ELAL--------VKE-LSVLENI--FLGNEITPGGIMDYDAMYLRAQKL 127

Query: 126 M---GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
           +    L          L +GQ++ +++A+ L     + +LDEP+ +L      +L  II 
Sbjct: 128 LAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIR 187

Query: 183 EHRKKG 188
           + +  G
Sbjct: 188 DLKAHG 193

Length = 506

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 39/155 (25%), Positives = 63/155 (40%), Gaps = 25/155 (16%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG----FSKPSAGEILWNGHDIT 75
           R+   IL+  +  +  G  +++ G  GSG ST L+ LA           G+I +NG    
Sbjct: 17  RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHYNGIPYK 75

Query: 76  QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK 135
           +     +Y  ++ ++S +D      TV       E L+        AL   G      E 
Sbjct: 76  E--FAEKYPGEIIYVSEEDVHFPTLTV------RETLDF-------ALRCKG-----NEF 115

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            R +S G+RKR+ +A  L     +   D  +  LD
Sbjct: 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 17/159 (10%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ--- 82
           L ++NI I  G   ++ G  G GKS+ L  + G  +   G++ W+  + ++         
Sbjct: 17  LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR 76

Query: 83  ------YKLQLNWLSLKDAVKEKFTVLD--NVQWFEVLEGKQGNSL-PALELMGLGRLAK 133
                 Y  Q  WL L   V+E  T     N Q ++ +      SL P ++L+  G   +
Sbjct: 77  NRYSVAYAAQKPWL-LNATVEENITFGSPFNKQRYKAV--TDACSLQPDIDLLPFGDQTE 133

Query: 134 --EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
             E+   LS GQR+R+ +AR L  +  I  LD+P  ALD
Sbjct: 134 IGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 30/144 (20%), Positives = 67/144 (46%), Gaps = 19/144 (13%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  +++  ++G  + L G NGSGKST   ++ G   P+ G++  NG              
Sbjct: 40  LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG-------------- 85

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL-----ELMGLGRLAKEKARMLS 140
           +++ +++   +  + T ++N+++  +  G +   + A+     E   LG    +  +  S
Sbjct: 86  EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYS 145

Query: 141 MGQRKRLQLARLLAIDRPIWLLDE 164
            G R +L  +  + ++  I ++DE
Sbjct: 146 SGMRAKLGFSINITVNPDILVIDE 169

Length = 264

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 51/181 (28%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L ++N++   +   + +++N+ +  G  L + G NG GK+T LR L G  +P +G + W+
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWS 379

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG--- 127
             +    G + Q                     D+   FE       N L   + M    
Sbjct: 380 --ENANIGYYAQ---------------------DHAYDFE-------NDLTLFDWMSQWR 409

Query: 128 ------------LGRL------AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169
                       LGRL       K+  ++LS G++ R+   +L+     + ++DEP+  +
Sbjct: 410 QEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469

Query: 170 D 170
           D
Sbjct: 470 D 470

Length = 530

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 26/210 (12%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P L +  +S      +  R V+  ++ G  L + G +GSGKST L  LAG   P  G   
Sbjct: 2   PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT 61

Query: 69  WNGHDI------------------TQSGIFHQYK---LQLNWLSLKDAVKEKFTVLDNVQ 107
           +                       T+ G  HQ     L++  +S    + E+   +   +
Sbjct: 62  YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMR-VSAGANIGERLMAI-GAR 119

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV 167
            +  +     + L  +E+    R+  +  R  S G ++RLQ+AR L     +  +DEP+ 
Sbjct: 120 HYGNIRATAQDWLEEVEI-DPTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTG 177

Query: 168 ALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
            LD     RLL+ +    R  G  VI+ TH
Sbjct: 178 GLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 46.8 bits (111), Expect = 4e-06
 Identities = 45/154 (29%), Positives = 74/154 (48%), Gaps = 12/154 (7%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           + +++N  I     + + G NG GKST L++++G  +PS+G +  +     +  +F Q+ 
Sbjct: 524 LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--VRMAVFSQH- 580

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFE-VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQ 143
             ++ L L         +L  ++ F  V E K    L +  + G   LA +    LS GQ
Sbjct: 581 -HVDGLDLSSN-----PLLYMMRCFPGVPEQKLRAHLGSFGVTG--NLALQPMYTLSGGQ 632

Query: 144 RKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL 177
           + R+  A++      I LLDEPS  LD D V  L
Sbjct: 633 KSRVAFAKITFKKPHILLLDEPSNHLDLDAVEAL 666

Length = 718

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 46.4 bits (111), Expect = 4e-06
 Identities = 55/212 (25%), Positives = 89/212 (41%), Gaps = 57/212 (26%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG 78
           + +  V+  +  G  L + G +GSGKS   + + G           GEIL++G D+    
Sbjct: 19  KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDL---- 74

Query: 79  IFHQYKLQLNWLSLKDAVKEKF-------------TVLDNV-----QWFEVLE------G 114
                      LSL +    K              T L+ V     Q  EVL        
Sbjct: 75  -----------LSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLS 123

Query: 115 KQGNSLPALELMGLGRLAKEKARM------LSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
           K+     A+EL+ L  +   + R+      LS G R+R+ +A  LA++  + + DEP+ A
Sbjct: 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183

Query: 169 LDYDGV----RLLEYIIAEHRKKGGIVIVATH 196
           LD   V    ++L+ +    R+KG  +I+ TH
Sbjct: 184 LD---VTVQAQILDLLKELQREKGTALILITH 212

Length = 316

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 41/175 (23%), Positives = 60/175 (34%), Gaps = 36/175 (20%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA----GFSKPSAGEILWNGHDITQSGI 79
            IL+ ++  I  G   V+ G  GSG ST L+ +A    GF     G I ++G   T   I
Sbjct: 75  DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI--TPEEI 132

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK---- 135
              Y+  + + +  D      TV       E L+       P     G+ R    K    
Sbjct: 133 KKHYRGDVVYNAETDVHFPHLTV------GETLDFAARCKTPQNRPDGVSREEYAKHIAD 186

Query: 136 --------------------ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                                R +S G+RKR+ +A        I   D  +  LD
Sbjct: 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLD 241

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.9 bits (108), Expect = 5e-06
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 18/183 (9%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  V+ SI  G  + + G NGSGKST  R++ G  +   G++  +G  +T   +++  + 
Sbjct: 23  LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKE 134
                   D      TV D+V +     G +   +P  E++            L    +E
Sbjct: 83  IGMVFQNPDNQFVGATVEDDVAF-----GMENQGIPREEMIKRVDEALLAVNMLDFKTRE 137

Query: 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
            AR LS GQ++R+ +A ++A+   I +LDE +  LD  G + +  +I E ++K  + +++
Sbjct: 138 PAR-LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLS 196

Query: 195 -TH 196
            TH
Sbjct: 197 ITH 199

Length = 277

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 44.5 bits (106), Expect = 6e-06
 Identities = 46/197 (23%), Positives = 80/197 (40%), Gaps = 62/197 (31%)

Query: 11  LLLKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           + L+N+S    + + +L+ ++  I  G  L++TG +G+GKS+  R LAG         LW
Sbjct: 1   IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG---------LW 51

Query: 70  ---NGHDI--TQSGIF----HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
              +G         +       Y   L   +L++ +           W +VL        
Sbjct: 52  PWGSGRIGMPEGEDLLFLPQRPY---LPLGTLREQL--------IYPWDDVL-------- 92

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL-LDEPSVALDYDGVRLLEY 179
                              S G+++RL  ARLL + +P ++ LDE + ALD +    L  
Sbjct: 93  -------------------SGGEQQRLAFARLL-LHKPKFVFLDEATSALDEESEDRLYQ 132

Query: 180 IIAEHRKKGGIVIVATH 196
           ++   ++ G  VI   H
Sbjct: 133 LL---KELGITVISVGH 146

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 44/199 (22%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--IFHQY 83
           L + +++        + GT GSGKST ++             L NG  I+++G  I   Y
Sbjct: 27  LNNTSLTFKKNKVTCVIGTTGSGKSTMIQ-------------LTNGLIISETGQTIVGDY 73

Query: 84  KLQLNWLSLKDAVKEKFTV-----LDNVQWFE-------------VLEGKQGNSLPALEL 125
            +  N   +K+  + +  +         Q F+             + E KQ       EL
Sbjct: 74  AIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPEL 133

Query: 126 MGLGRLAKEKARM----LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG----VRLL 177
           + L +L ++  +     LS GQ++R+ LA ++A+D    +LDEP+  LD  G    + L 
Sbjct: 134 LKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLF 193

Query: 178 EYIIAEHRKKGGIVIVATH 196
           E +  E++K+   +I+ TH
Sbjct: 194 ERLNKEYKKR---IIMVTH 209

Length = 289

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
           V + +++G  L + G +G GKSTF R + G  K + GE+ W G D+  
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87

Length = 331

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 50/182 (27%), Positives = 79/182 (43%), Gaps = 26/182 (14%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L  +  SI +G  + + G  G GKS+ L  L        G +   G           Y  
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS--------VAYVP 705

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS-------LPALELMGLGRLAK--EKA 136
           Q  W+   D+++E      N+ + + L  K           LP LE++  G   +  EK 
Sbjct: 706 QQAWIQ-NDSLRE------NILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKG 758

Query: 137 RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIA-EHRKKGGIVIVA 194
             LS GQ++R+ LAR +  +  I+L D+P  A+D + G  + E++I  E   K    I+ 
Sbjct: 759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILV 818

Query: 195 TH 196
           TH
Sbjct: 819 TH 820

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 30/167 (17%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
           Q +  VN     G    + G  GSGKST ++ +    KP+ G +  +  DIT   I H+ 
Sbjct: 21  QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD--DIT---ITHKT 75

Query: 84  KLQLNWLSLKDAVKEKFTVL---------DNVQWFEVLEGKQGNSLPALE--------LM 126
           K +     ++   K    V          D V+  E++ G +   +   E        LM
Sbjct: 76  KDKY----IRPVRKRIGMVFQFPESQLFEDTVER-EIIFGPKNFKMNLDEVKNYAHRLLM 130

Query: 127 GLG---RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            LG    +  +    +S GQ +++ +  +LA++  I +LDEP+  LD
Sbjct: 131 DLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177

Length = 286

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
          + +G  + + G NG+GK+T +++LAG   P+     W+G
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG 60

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 49/193 (25%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG-----FS--- 60
           PR++L N     N + IL +++  ++ G    + G NG+GKST L ++ G     +S   
Sbjct: 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL 318

Query: 61  -----KPSAGEILWNGHDITQ-----SGIFHQ-YKLQLNWLS-----------LKDAVKE 98
                +  +GE +W   DI +     S   H  Y++  +  +           +  AV +
Sbjct: 319 TLFGRRRGSGETIW---DIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSD 375

Query: 99  KFTVLDNVQWFEVLEGKQGNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLARLLAIDR 157
           +   L   QW              L+++G+  R A      LS GQ++   + R L    
Sbjct: 376 RQQKLAQ-QW--------------LDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHP 420

Query: 158 PIWLLDEPSVALD 170
            + +LDEP   LD
Sbjct: 421 TLLILDEPLQGLD 433

Length = 490

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 30/169 (17%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
                L +VN ++  G  L + G  GSGKST L ++      S G+I ++   +T+    
Sbjct: 326 TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK---- 381

Query: 81  HQYKLQLNWLSLKDAV--KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK----- 133
               LQL+    + AV  +  F   D V     L G+   +    E+  + RLA      
Sbjct: 382 ----LQLDSWRSRLAVVSQTPFLFSDTVANNIAL-GRPDAT--QQEIEHVARLASVHDDI 434

Query: 134 ------------EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                       E+  MLS GQ++R+ +AR L ++  I +LD+   A+D
Sbjct: 435 LRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483

Length = 569

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 39/180 (21%)

Query: 41  LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN--WLSLKDAVKE 98
           L G NG+GKST L  +AG   P +G I + G  +     +   +L  +  +LS +     
Sbjct: 27  LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEA---WSAAELARHRAYLSQQQ---- 78

Query: 99  KFTVLDNVQWFEVLEGKQGNSLPAL-----------ELMGLGRLAKEKARM---LSMG-- 142
             T    +  F+ L        P             E+     L  +  R    LS G  
Sbjct: 79  --TPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEW 132

Query: 143 QRKRLQLARLLAIDRPI------WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           QR RL  A +L +   I       LLDEP  +LD      L+ +++E  ++G  V++++H
Sbjct: 133 QRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSH 191

Length = 248

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 51/193 (26%)

Query: 36  GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA 95
           G  +++ G  GSGK+T  R LA    P  G ++                           
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVI--------------------------- 34

Query: 96  VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155
                           ++G+        +L+ +    K+ +    +  R  L LAR L  
Sbjct: 35  ---------------YIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKP 79

Query: 156 DRPIWLLDEPSVALDYDGVRLL-----EYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLP 210
           D  + +LDE +  LD +   LL       ++   + +  + ++ T    +      LR  
Sbjct: 80  D--VLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLR-- 135

Query: 211 PRFPRRMTLVDML 223
            RF RR+ L+ +L
Sbjct: 136 RRFDRRIVLLLIL 148

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 12/183 (6%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEILWNGHDITQSGIFHQY 83
           L  +++ +  G  + L G NG+GKST +++L+G        GEI W+G  +  S I    
Sbjct: 17  LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76

Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS------LPALELMGLGRL-AKEKA 136
           +  +  +  +  +  + +V +N+     +    G        L A  L+   +L A    
Sbjct: 77  RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136

Query: 137 RM---LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193
           R       GQ++ +++A+ L     + +LDEPS +L      +L  II + +  G   + 
Sbjct: 137 RPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVY 196

Query: 194 ATH 196
            +H
Sbjct: 197 ISH 199

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 40/174 (22%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L+++++SI     +V+TG +GSGKST +                        G++   K 
Sbjct: 11  LQNLDVSIPLNVLVVVTGVSGSGKSTLV----------------------NEGLYASGKA 48

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-KARMLSMGQR 144
           +L    L    + K   +D               L  L  +GLG L    K   LS G+ 
Sbjct: 49  RLI-SFLPKFSRNKLIFID--------------QLQFLIDVGLGYLTLGQKLSTLSGGEL 93

Query: 145 KRLQLARLLA--IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           +R++LA  L       +++LDEPS  L    +  L  +I      G  VI+  H
Sbjct: 94  QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the ATP-binding cassette superfamily

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 137 RMLSMGQRKRLQLARLLAIDR----PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
           ++LS G++    LA + A+      P ++LDE   ALD    R +  +I E  K     I
Sbjct: 93  QILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFI 152

Query: 193 VATHLPIQIEDA 204
           V T      E+A
Sbjct: 153 VITLKKEMFENA 164

The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. Length = 178

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 29/182 (15%)

Query: 35  DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS--GIFHQYK---LQLNW 89
           +G  L L G NG GKST L++LAG  KP+ G+      D       I  +++   LQ  +
Sbjct: 25  EGQVLGLVGPNGIGKSTALKILAGKLKPNLGK-----FDDPPDWDEILDEFRGSELQNYF 79

Query: 90  LSLKDAVKEKFTVLDNVQWFEVL----EGKQGNSLPA----------LELMGLGRLAKEK 135
             L +       V+   Q+ +++    +GK G  L            ++ + L  +    
Sbjct: 80  TKLLE---GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRN 136

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKKGGIVIVA 194
              LS G+ +R+ +A  LA D   +  DEPS  LD    RL    +I E  +    V+V 
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI-KQRLNAARLIRELAEDDNYVLVV 195

Query: 195 TH 196
            H
Sbjct: 196 EH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 36  GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--------QYKLQL 87
           G  L L G +GSGKST  R L    +   GEI++NG  I               Q+  Q 
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409

Query: 88  NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM---LSMGQR 144
            + SL        ++++ ++   +L GK   +  A  L  +G L +   R     S GQR
Sbjct: 410 PYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQR 469

Query: 145 KRLQLARLLAIDRPIWLLDEPSVALD 170
           +R+ +AR LA++  + + DE   ALD
Sbjct: 470 QRICIARALALNPKVIIADEAVSALD 495

Length = 623

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 83/242 (34%)

Query: 4   RKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
                P L ++N+S        +R V+ ++  G  L + G  G+G++   R L G    S
Sbjct: 257 EGIGEPVLEVRNLS----GGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF----------------TVLDNVQ 107
           +GEIL +G  +                S +DA+K                   ++ +N+ 
Sbjct: 313 SGEILLDGKPVRIR-------------SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENI- 358

Query: 108 WFEVLEGKQGNSLPAL-ELMGLGRLAKEKARMLSMGQRKRLQ------------------ 148
                      +L +L      G + + K R L+    +RL+                  
Sbjct: 359 -----------TLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQ 407

Query: 149 ----LARLLAIDRPIWLLDEPSVALD-------YDGVRLLEYIIAEHRKKG-GIVIVATH 196
               LAR LA D  + +LDEP+  +D       Y        +I E   +G  I+++++ 
Sbjct: 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYR-------LIRELAAEGKAILMISSE 460

Query: 197 LP 198
           LP
Sbjct: 461 LP 462

Length = 500

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 31/165 (18%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL------WNGHDITQSGIFHQ 82
           V++ + +G    + GT+G+GK+T  +++AG  +P++GE+       W   D+T+ G   +
Sbjct: 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWV--DMTKPGPDGR 360

Query: 83  --YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-------ALELMGLGRLAK 133
              K  +  L  +  +    TVLDN      L    G  LP       A+  + +    +
Sbjct: 361 GRAKRYIGILHQEYDLYPHRTVLDN------LTEAIGLELPDELARMKAVITLKMVGFDE 414

Query: 134 EKAR--------MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           EKA          LS G+R R+ LA++L  +  I +LDEP+  +D
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 14/182 (7%)

Query: 28  HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIFHQY 83
            +N+S+  G  L L G +GSGKS     + G   P    ++GEIL +G  +    I    
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSI-RGR 62

Query: 84  KLQLNWLSLKDAVKEKFTV----LDNVQWFEVLEGK-QGNSLPALELMGL---GRLAKEK 135
            +     + + A    FT+    ++ ++    L  + +   L ALE +GL     + K+ 
Sbjct: 63  HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKY 122

Query: 136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVA 194
              LS G  +R+ +A  L ++ P  + DEP+  LD  +  R+L+ +    +  G  +++ 
Sbjct: 123 PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLI 182

Query: 195 TH 196
           TH
Sbjct: 183 TH 184

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 52/212 (24%), Positives = 93/212 (43%), Gaps = 26/212 (12%)

Query: 7   PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
             P L +  +S +    +  R V+  ++ G  L + G +GSGK+T L+ ++G   P AG 
Sbjct: 3   DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62

Query: 67  ILWNGHDI------------------TQSGIFHQYK---LQLNWLSLKDAVKEKFTVLDN 105
           + +   D                   T+ G  HQ     L++  +S    + E+   +  
Sbjct: 63  VTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQ-VSAGGNIGERLMAIGA 121

Query: 106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
             +   +  +  + L  +E+  L R+  +  R  S G ++RLQ+AR L     +  +DEP
Sbjct: 122 RHYGN-IRAEAQDWLEEVEI-DLDRI-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEP 178

Query: 166 SVALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
           +  LD     RLL+ +    R+ G  V++ TH
Sbjct: 179 TGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210

Length = 258

>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 12/28 (42%), Positives = 19/28 (67%)

Query: 30 NISIHDGGALVLTGTNGSGKSTFLRMLA 57
          +I +     +++TG+N SGKSTFLR + 
Sbjct: 19 DIDMEKKNGILITGSNMSGKSTFLRTIG 46

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE 66
          QIL+ +++S   G  + + G NG+GKST LR++AG  K   GE
Sbjct: 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGE 63

Length = 556

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 15/168 (8%)

Query: 41   LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL--KDAVKE 98
            + G  G+GKS+ L  L    +   G I+ +  D+ + G+    ++    LS+  +  V  
Sbjct: 1267 VVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV----LSIIPQSPVLF 1322

Query: 99   KFTVLDNVQWF---------EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL 149
              TV  N+  F         E LE      +      GL     E     S+GQR+ L L
Sbjct: 1323 SGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382

Query: 150  ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL 197
            AR L     I +LDE + ++D     L++  I E  K   ++++A  L
Sbjct: 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRL 1430

Length = 1495

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 16/48 (33%), Positives = 27/48 (56%)

Query: 29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
          V+ ++  G  L + G +G GKST  R+L     P+ GE+ + G D+ +
Sbjct: 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLK 81

Length = 327

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 52/223 (23%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           P L ++ ++ +   ++  R V+  ++ G  L + G +GSGK+T L  L+    P AGE+ 
Sbjct: 5   PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64

Query: 69  WNG-----HDI-------------TQSGIFHQYKLQLNWLSLKDAVK------EKFTVLD 104
           +        D+             T+ G  HQ+        L+  V       E+   + 
Sbjct: 65  YRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRD----GLRMQVSAGGNIGERLMAVG 120

Query: 105 N----------VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA 154
                        W E +E            +   R+  +     S G ++RLQ+AR L 
Sbjct: 121 ARHYGDIRATAGDWLERVE------------IDAARI-DDLPTTFSGGMQQRLQIARNLV 167

Query: 155 IDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
               +  +DEP+  LD     RLL+ +    R+ G  V++ TH
Sbjct: 168 THPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210

Length = 258

>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLL---AIDRPIWLLDEPSVALDYDGVRLLEY 179
           L  + LG+     A  LS G+ +R++LA+ L   +  R +++LDEP+  L +D ++ L  
Sbjct: 818 LGYIRLGQ----PATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLE 873

Query: 180 IIAEHRKKGGIVIVATH 196
           ++     KG  V+V  H
Sbjct: 874 VLQRLVDKGNTVVVIEH 890

This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 49/205 (23%), Positives = 77/205 (37%), Gaps = 57/205 (27%)

Query: 25   ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI----- 79
            +L  ++  I     + + G  G+GKS+ L  L    +   G IL +G DI++ G+     
Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313

Query: 80   ----------------------FHQYKLQLNWLS-----LKDAVKEKFTVLDNVQWFEVL 112
                                  F+++     W S     LKD ++     LD     EV 
Sbjct: 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDA----EVS 1369

Query: 113  EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
            E  +                       S+GQR+ L LAR L     I +LDE + A+D  
Sbjct: 1370 EAGEN---------------------FSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408

Query: 173  GVRLLEYIIAEHRKKGGIVIVATHL 197
               L++  I E  K   ++I+A  L
Sbjct: 1409 TDALIQKTIREEFKSCTMLIIAHRL 1433

Length = 1622

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 47/197 (23%)

Query: 9   PRLLLKNVS-CMRNAQQILRHVN---ISIHDGGALVLTGTNGSGKS-TFLRMLAGFSKPS 63
           P L ++N+S   R  Q +   VN   + I  G  L L G +GSGKS T L +L     P 
Sbjct: 4   PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP 63

Query: 64  A----GEILWNGHDITQSG--------------IFHQYKLQLNWLSLKDAVKEKFTVLDN 105
                G+I ++G  +  +               IF +  + LN L       EK      
Sbjct: 64  VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLH----TLEK------ 113

Query: 106 VQWFEVL--------EGKQGNSLPALELMGLGRLAKEKA---RMLSMGQRKRLQLARLLA 154
            Q +EVL        E  +G  L  L+ +G+ + AK        LS G+R+R+ +A  L 
Sbjct: 114 -QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMAL- 171

Query: 155 IDRPIWLL-DEPSVALD 170
           + RP  L+ DEP+ ALD
Sbjct: 172 LTRPELLIADEPTTALD 188

Length = 529

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 53/225 (23%), Positives = 86/225 (38%), Gaps = 46/225 (20%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS---KPSAGEILW 69
           ++N S     + ++   ++++  G    L G NG+GK+TFLR +A  +    P   +IL 
Sbjct: 180 MENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILH 239

Query: 70  N-----GHDIT------------------------------QSGIFHQYKLQLNWLSLKD 94
                 G D T                                    + K        KD
Sbjct: 240 VEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKD 299

Query: 95  AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG---RLAKEKARMLSMGQRKRLQLAR 151
           AV ++   +   +  E+++     +  A  L GL     +  +  +  S G R R+ LAR
Sbjct: 300 AVSQRLEEI--YKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALAR 357

Query: 152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            L I+  + LLDEP+  LD   V  LE  + +  K     IV +H
Sbjct: 358 ALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKT---FIVVSH 399

Length = 718

>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 28 HVNISIHDGGALVLTGTNGSGKSTFLRMLA 57
            +I++  G  L++TG N  GKST+LR + 
Sbjct: 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIG 50

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 13/131 (9%)

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL 128
           W+G    +   F Q  LQ         +  K   ++     EVL+G + + L  L  +GL
Sbjct: 416 WHGKTFAE---FQQMSLQ-ELFIFLSQLPSKSLSIE-----EVLQGLK-SRLSILIDLGL 465

Query: 129 GRLAKEKA-RMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHR 185
             L  E+A   LS G+++R  LA+ L  +     ++LDEPS+ L       L  +I + R
Sbjct: 466 PYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLR 525

Query: 186 KKGGIVIVATH 196
            +G  V++  H
Sbjct: 526 DQGNTVLLVEH 536

Length = 1809

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 40/190 (21%), Positives = 82/190 (43%), Gaps = 18/190 (9%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-GIFHQYK 84
           ++ V+  +  G  + + G  G+G+S  +  ++G  KP++G IL NG D+        + +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333

Query: 85  LQLNWLS---LKDAVKEKFTVLDNV--QWFEVLEGKQGNSLPALELMGL-GRLAKE---- 134
           L L ++        +    ++ +N+     +     +G  L    +      L +E    
Sbjct: 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR 393

Query: 135 ------KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
                  AR LS G +++L LAR LA    + +  +P+  LD   +  +   + E R  G
Sbjct: 394 APSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAG 453

Query: 189 -GIVIVATHL 197
             +++++  L
Sbjct: 454 KAVLLISEDL 463

Length = 501

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score = 39.5 bits (93), Expect = 5e-04
 Identities = 44/151 (29%), Positives = 62/151 (41%), Gaps = 35/151 (23%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQS-GI 79
           Q+L +++  +  G    L G +G+GK+T L +LAG  K +    GEIL NG  + ++   
Sbjct: 21  QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAGVITGEILINGRPLDKNFQR 79

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARML 139
              Y  Q +  S    V+E                       AL             R L
Sbjct: 80  STGYVEQQDVHSPNLTVRE-----------------------ALRF-------SALLRGL 109

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           S+ QRKRL +   LA    I  LDEP+  LD
Sbjct: 110 SVEQRKRLTIGVELAAKPSILFLDEPTSGLD 140

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 15/171 (8%)

Query: 36  GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA 95
           G  L L G NG+GKST L  +AG +   +G I + G  +       +      +LS +  
Sbjct: 25  GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSA-TELARHRAYLSQQQT 82

Query: 96  VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI 155
                 V     +  + +  +  +    ++ G   L  +  R  +       Q  RL A+
Sbjct: 83  PPFAMPVW---HYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAV 139

Query: 156 DRPIW----------LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
              I           LLDEP  +LD      L+ +++   ++G  +++++H
Sbjct: 140 VLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190

Length = 248

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 30 NISIH--DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
          NIS+    G    L G NG GKSTF+++L G  +PSAG +
Sbjct: 19 NISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV 58

Length = 530

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 39.7 bits (94), Expect = 9e-04
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
           K  +LS G+R RL LA+ L     + LLDEP+  LD + +R LE
Sbjct: 442 KVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE 485

Length = 556

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 16/158 (10%)

Query: 27  RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ 86
           R++++ +  G  L L G  G+G++     L G      G I+ NG +I       +    
Sbjct: 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339

Query: 87  LNWLSLKDAVKEKFTVLDN-VQW--FEVLEGKQGNSL-PALELMGLGRL----------A 132
           L +L         +  LD  + W    +   ++G  + PA E   L R           A
Sbjct: 340 LVYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHA 397

Query: 133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           ++ AR LS G ++++ +A+ L     + ++DEP+  +D
Sbjct: 398 EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435

Length = 510

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 32/185 (17%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG--------FSKPSAGEILWNG 71
           R  + +L +   +I+ G  + L G NG GKST L +L          ++ P   ++ W  
Sbjct: 11  RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVN 70

Query: 72  HD---ITQSGI---------FHQYKLQLNWLSLKD---AVKEKFTVLDNVQWFEVLEGKQ 116
            +   + Q  +         + Q + QL+  + ++   A+      LD +  + +     
Sbjct: 71  QETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTI----- 125

Query: 117 GNSLPALELMGLG---RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG 173
             S  A  L GLG      +      S G R RL LA+ L     + LLDEP+  LD D 
Sbjct: 126 -RSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA 184

Query: 174 VRLLE 178
           V  LE
Sbjct: 185 VIWLE 189

Length = 638

>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 31/144 (21%), Positives = 65/144 (45%), Gaps = 19/144 (13%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L +++  + +G  + + G NGSGKST   ++AG + P+ G +     DI  S        
Sbjct: 40  LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV-----DIKGSAAL----- 89

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEKARMLS 140
               +++   +  + T ++N++   ++ G     +       +E   +G+   +  +  S
Sbjct: 90  ----IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYS 145

Query: 141 MGQRKRLQLARLLAIDRPIWLLDE 164
            G + RL  A  + I+  I ++DE
Sbjct: 146 SGMKSRLGFAISVHINPDILVIDE 169

Length = 549

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 29/118 (24%), Positives = 45/118 (38%), Gaps = 4/118 (3%)

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNSLPALELMGLGRLAKEKARMLSMGQ 143
           L  +   L   +     +L N++    +E               L RL K   + +S G 
Sbjct: 135 LLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESDLLRLLKLLIKGISDGT 194

Query: 144 RKRLQLARLLAIDRPIW---LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP 198
           ++ L L   L    P     L+DEP   L    +R L  ++ E  +KG  +I  TH P
Sbjct: 195 KRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSP 252

Length = 256

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 43  GTNGSGKSTFLRMLAGFSKPSAGEI 67
           G NG+GKST  +M+ G  +P +G I
Sbjct: 357 GPNGAGKSTLFKMITGQEQPDSGTI 381

Length = 556

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 137  RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV 193
            + LS GQ++R+ +AR L  +  I LLDE + +LD +  +L+E  I + + K    I+
Sbjct: 1357 KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413

Length = 1466

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
           +++++  G  L L G +GSGKST    L     PS GEI ++G DI  
Sbjct: 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PSQGEIRFDGQDIDG 352

Length = 534

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 35/198 (17%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG------------- 71
           +L +  + I D   + L G NG+GKST +++L G      G I++               
Sbjct: 18  LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPR 77

Query: 72  ------HDITQSGIFHQYKL-----QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
                 +D    GI  Q +       ++ L   D  ++    L  +Q  E L+      L
Sbjct: 78  NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQ--EQLDHHNLWQL 135

Query: 121 PA-----LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR 175
                  L  +GL          LS G  ++  L R L  +  + LLDEP+  LD + + 
Sbjct: 136 ENRINEVLAQLGLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIE 193

Query: 176 LLEYIIAEHRKKGGIVIV 193
            LE  +     +G I+ +
Sbjct: 194 WLEGFLKTF--QGSIIFI 209

Length = 635

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PLN03211	659	ABC transporter G-25; Provisional	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
COG0488	530	Uup ATPase components of ABC transporters with dup	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
PF00005	137	ABC_tran: ABC transporter This structure is on hol	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	100.0
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	100.0
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	100.0
KOG0054	1381	consensus Multidrug resistance-associated protein/	100.0
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	100.0
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.98
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.97
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.97
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.97
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.97
KOG0062	582	consensus ATPase component of ABC transporters wit	99.97
COG4178	604	ABC-type uncharacterized transport system, permeas	99.97
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.97
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.96
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.96
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.96
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.96
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.96
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.96
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.95
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.95
KOG0062	582	consensus ATPase component of ABC transporters wit	99.95
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.95
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.94
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.93
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.91
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.91
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.9
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.9
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.9
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.9
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.9
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.89
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.89
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.89
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.88
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.87
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.84
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.83
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.83
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.81
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.81
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.77
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.77
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.77
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.76
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.76
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.76
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.76
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.75
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.68
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.68
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.68
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.66
PRK00064	361	recF recombination protein F; Reviewed	99.66
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.64
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.6
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.58
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.56
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.54
COG3910	233	Predicted ATPase [General function prediction only	99.5
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	99.49
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.49
cd01128	249	rho_factor Transcription termination factor rho is	99.48
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.47
PHA02562	562	46 endonuclease subunit; Provisional	99.45
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.44
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.43
PRK10246	1047	exonuclease subunit SbcC; Provisional	99.42
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.42
PRK10869	553	recombination and repair protein; Provisional	99.4
PRK03918	880	chromosome segregation protein; Provisional	99.38
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.37
PRK13695	174	putative NTPase; Provisional	99.37
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	99.35
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.3
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.3
PRK01156	895	chromosome segregation protein; Provisional	99.28
smart00382	148	AAA ATPases associated with a variety of cellular	99.25
PRK13830	818	conjugal transfer protein TrbE; Provisional	99.24
PRK06067	234	flagellar accessory protein FlaH; Validated	99.18
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	99.17
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.16
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	99.14
PRK02224	880	chromosome segregation protein; Provisional	99.12
TIGR00611	365	recf recF protein. All proteins in this family for	99.1
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.08
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.07
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	99.05
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	99.04
PRK13891	852	conjugal transfer protein TrbE; Provisional	99.03
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.02
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	99.01
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.01
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.0
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	99.0
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.96
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.94
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.88
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.83
PRK09825	176	idnK D-gluconate kinase; Provisional	98.81
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	98.79
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.79
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.79
PRK09862	506	putative ATP-dependent protease; Provisional	98.77
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.7
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.7
PRK08149	428	ATP synthase SpaL; Validated	98.69
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.66
PRK06315	442	type III secretion system ATPase; Provisional	98.65
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.64
PRK14079	349	recF recombination protein F; Provisional	98.63
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.63
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.62
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.61
PRK09099	441	type III secretion system ATPase; Provisional	98.61
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.59
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	98.58
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.57
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	98.57
PRK00300	205	gmk guanylate kinase; Provisional	98.57
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.56
PRK10416	318	signal recognition particle-docking protein FtsY;	98.55
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.55
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.55
TIGR00767	415	rho transcription termination factor Rho. Members	98.54
PRK09183	259	transposase/IS protein; Provisional	98.51
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.49
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.49

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.1e-62  Score=400.15  Aligned_cols=198  Identities=29%  Similarity=0.416  Sum_probs=181.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+|+||+..+|++||++|++||+++|+||||||||||||||+||.+|++|+|+++|+++.........++++|
T Consensus         1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG   80 (240)
T COG1126           1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG   80 (240)
T ss_pred             CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence            47999999999999999999999999999999999999999999999999999999999999988754333456788999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +++|+.++||++||.||+.+.... .+     .++.+.++|+++||.+..+.+|.+|||||||||+|||||+++|+++|+
T Consensus        81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLF  160 (240)
T COG1126          81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLF  160 (240)
T ss_pred             eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEee
Confidence            999999999999999999876532 11     123456789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+|||+...++.+.+++++++|.|.|+|||++.++.++.|
T Consensus       161 DEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Vad  204 (240)
T COG1126         161 DEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVAD  204 (240)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhh
Confidence            99999999999999999999999999999999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.4e-58  Score=382.73  Aligned_cols=191  Identities=31%  Similarity=0.414  Sum_probs=173.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++++|++.|++..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+++..      ....++
T Consensus         2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~------p~~~~~   75 (248)
T COG1116           2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTG------PGPDIG   75 (248)
T ss_pred             ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCC------CCCCEE
Confidence            46899999999999999999999999999999999999999999999999999999999999998843      235789


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.++|..||.||+.++....+     ..+.+.++++.+||.++.+++|++|||||||||+|||||+.+|++|+||
T Consensus        76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD  155 (248)
T COG1116          76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD  155 (248)
T ss_pred             EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999998765432     1235678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhh
Q 027067          164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~  205 (229)
                      |||++||..+++.+.+.+.++ ++.++||++||||.+++-...
T Consensus       156 EPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~Ls  198 (248)
T COG1116         156 EPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA  198 (248)
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhh
Confidence            999999999999998877774 666899999999988877654

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-57  Score=379.14  Aligned_cols=196  Identities=32%  Similarity=0.427  Sum_probs=179.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      |++++||+|+|+++.+++|+||+|++||+++++|||||||||+||+|+++++|++|+|+++|+++...... ..++++||
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~-~LRr~IGY   79 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPV-ELRRKIGY   79 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHH-HHHHhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999876653 56789999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +-|+..+||++||.||+.+...+.++     ..++.++++.+||+  ++.+++|++|||||+|||.+||||+.+|+++||
T Consensus        80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLM  159 (309)
T COG1125          80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLM  159 (309)
T ss_pred             hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEee
Confidence            99999999999999999987666543     24567899999996  589999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++|||.++..+.+.+.++++ -|+|||+||||++++-...|
T Consensus       160 DEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLad  204 (309)
T COG1125         160 DEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLAD  204 (309)
T ss_pred             cCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhc
Confidence            999999999999999988888755 49999999999999887653

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-56  Score=382.46  Aligned_cols=197  Identities=27%  Similarity=0.375  Sum_probs=180.8

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQ   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~   82 (229)
                      |+++++|+|.|..     ..+|+||||+|++||++||+|.||||||||+|+|++|.+|++|+|.++|+++...+.  .++
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~   80 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ   80 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence            6899999999975     579999999999999999999999999999999999999999999999999876542  345


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      .++++++++|+++++...||++|++|+....+.     +.++.++++.+||.+..+++|.+|||||||||+|||||+.+|
T Consensus        81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P  160 (339)
T COG1135          81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNP  160 (339)
T ss_pred             HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCC
Confidence            788999999999999999999999998776543     245678999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+|||||+|||++.+.+.++|+++.+ .|.||++|||.++.+.++||
T Consensus       161 ~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~  210 (339)
T COG1135         161 KILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICD  210 (339)
T ss_pred             CEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhh
Confidence            99999999999999999999999999755 49999999999999999986

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-56  Score=378.05  Aligned_cols=194  Identities=29%  Similarity=0.426  Sum_probs=172.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++|++++|++.++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++|++.....    .+..++
T Consensus         3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~----~~~~Ig   78 (254)
T COG1121           3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR----KRLRIG   78 (254)
T ss_pred             cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc----cCCeEE
Confidence            5799999999999768999999999999999999999999999999999999999999999998875431    235799


Q ss_pred             EeecccccC--CCCCHHHhHHHHHHhc---------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVK--EKFTVLDNVQWFEVLE---------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~--~~~tv~e~l~~~~~~~---------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |+||...+.  ...||+|.+..+....         ...+.+.++|+++|+.++.++.+.+|||||+|||.|||||+++|
T Consensus        79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p  158 (254)
T COG1121          79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNP  158 (254)
T ss_pred             EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCC
Confidence            999976443  3459999987642211         11356788999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|+|||||+|+|+.++..++++|++++++|+||++||||++.+.+.+|
T Consensus       159 ~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D  207 (254)
T COG1121         159 DLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFD  207 (254)
T ss_pred             CEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCC
Confidence            9999999999999999999999999999889999999999999999764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.5e-55  Score=367.46  Aligned_cols=194  Identities=32%  Similarity=0.459  Sum_probs=170.3

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQ   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~   82 (229)
                      +++++||++.|+.    ..+|+++||+|++||+++|+|||||||||||++|.|+.+|++|+|+++|+++...+..   ..
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~   80 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL   80 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence            4789999999853    4799999999999999999999999999999999999999999999999998865432   22


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcC
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      .+..+||++|+.++.+.+||.||+.++..+...     .....++++.+|+.+..+ ++|.+|||||||||+|||||+.+
T Consensus        81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~  160 (226)
T COG1136          81 RRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINN  160 (226)
T ss_pred             HHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcC
Confidence            456799999999999999999999986554432     234567788899987666 88999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~  203 (229)
                      |+++|+||||.+||.++.+.+.+++.++.++ |+|||+||||+..+..
T Consensus       161 P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~  208 (226)
T COG1136         161 PKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKY  208 (226)
T ss_pred             CCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHh
Confidence            9999999999999999999999999998654 8999999999876653

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=7.1e-56  Score=376.04  Aligned_cols=197  Identities=32%  Similarity=0.407  Sum_probs=179.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||++.|+++++|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|+++|+++...+. ....+.++
T Consensus         1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~-kelAk~ia   79 (258)
T COG1120           1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP-KELAKKLA   79 (258)
T ss_pred             CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH-HHHhhhEE
Confidence            36899999999999999999999999999999999999999999999999999999999999999987654 45677899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      |+||.+...+.+||+|.+.++....    .     +.+.+.++++.+|+.++.++.+.+|||||||||.|||||+++|++
T Consensus        80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i  159 (258)
T COG1120          80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI  159 (258)
T ss_pred             EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE
Confidence            9999998889999999988753211    1     112456789999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||..++..++++++++. ++|.|||+|+||++.+...+|
T Consensus       160 LLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad  207 (258)
T COG1120         160 LLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYAD  207 (258)
T ss_pred             EEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            99999999999999999999999987 559999999999999999887

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.5e-55  Score=365.65  Aligned_cols=200  Identities=32%  Similarity=0.424  Sum_probs=179.8

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hhh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QYK   84 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~~   84 (229)
                      +.+.+++++|+++||++.+++||||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++.+.+...  ..+
T Consensus         5 ~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir   84 (263)
T COG1127           5 PEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR   84 (263)
T ss_pred             CcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999988765433  346


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcC-c-c----ccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-K-Q----GNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~-~----~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +++|+++|+-++|..+||+||+.|+..... . +    +.+...++.+||... .+++|++|||||++||+||||++.+|
T Consensus        85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP  164 (263)
T COG1127          85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP  164 (263)
T ss_pred             hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence            679999999999999999999998654322 1 1    224456889999866 89999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +++++||||+||||.+...+.+++.++++. |.|+++||||++.+..++|
T Consensus       165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~D  214 (263)
T COG1127         165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIAD  214 (263)
T ss_pred             CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhc
Confidence            999999999999999999999999998766 8999999999999999886

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-55  Score=388.30  Aligned_cols=195  Identities=34%  Similarity=0.429  Sum_probs=178.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +.++++||+|+|++..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|++++..++   .++.++
T Consensus         4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp---~kR~ig   80 (352)
T COG3842           4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP---EKRPIG   80 (352)
T ss_pred             ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hhcccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999988653   567899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +++|+.++||++||.||+.|+....+.      ..++.++++.+++.++.+++|++|||||||||+|||||+.+|++|||
T Consensus        81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL  160 (352)
T COG3842          81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL  160 (352)
T ss_pred             eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence            999999999999999999998764331      13567899999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|+||.+-++.+..-++++ ++.|.|.|+||||.+++-...|
T Consensus       161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msD  205 (352)
T COG3842         161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSD  205 (352)
T ss_pred             cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcc
Confidence            9999999999999888878776 4559999999999998877654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.8e-55  Score=384.29  Aligned_cols=194  Identities=35%  Similarity=0.461  Sum_probs=177.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+|+++||+|.||+..+++++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|++++...+   ..++++
T Consensus         2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P---~~R~ia   78 (338)
T COG3839           2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP---EKRGIA   78 (338)
T ss_pred             cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hHCCEE
Confidence            36999999999998779999999999999999999999999999999999999999999999999988654   357899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      +++|+..+||++||+||+.|+....+     .++++.++.+.++++++++++|.+|||||||||+|||||+.+|+++|||
T Consensus        79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D  158 (338)
T COG3839          79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD  158 (338)
T ss_pred             EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence            99999999999999999999877653     2356778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhh
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~  205 (229)
                      ||+|+||...+..+...+++++++ |.|+|+||||..++....
T Consensus       159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla  201 (338)
T COG3839         159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA  201 (338)
T ss_pred             CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence            999999999999999888887654 899999999988876654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.5e-54  Score=348.28  Aligned_cols=195  Identities=29%  Similarity=0.380  Sum_probs=178.0

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhc
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~   86 (229)
                      ||+++||+|.|++ +++|+||||+|++||++-|+||||||||||||+|++..+|++|+|+++|.+++....  ....+++
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~   80 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ   80 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence            6899999999954 569999999999999999999999999999999999999999999999999976432  2346889


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      +|.++|+..+.+..||+||++|.....+.     ..++.++|+.+||.+..+..|.+|||||||||+||||++.+|++||
T Consensus        81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLl  160 (223)
T COG2884          81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLL  160 (223)
T ss_pred             eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEe
Confidence            99999999999999999999997665432     3456789999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .||||.+|||.....+++++.++...|+||+|+|||.+.+..+
T Consensus       161 ADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~  203 (223)
T COG2884         161 ADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRM  203 (223)
T ss_pred             ecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhc
Confidence            9999999999999999999999999999999999999887763

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1e-53  Score=373.00  Aligned_cols=196  Identities=30%  Similarity=0.468  Sum_probs=181.5

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||+++|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|+.+|++|+|.++|.+....  ....++++
T Consensus         3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~i   80 (293)
T COG1131           3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRI   80 (293)
T ss_pred             ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhhe
Confidence            3588999999999 69999999999999999999999999999999999999999999999999998654  24567789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+++.+|++||+.|+..++..     ..++.++++.++|.+..++++.+||+|||||++||+||+.+|++|||
T Consensus        81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL  160 (293)
T COG1131          81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLIL  160 (293)
T ss_pred             EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999999998877653     24577899999998877889999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+|||+.++..++++|+.++++| .||+++||.+++++..||
T Consensus       161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d  205 (293)
T COG1131         161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD  205 (293)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC
Confidence            99999999999999999999999887 799999999999999886

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=3.5e-53  Score=353.82  Aligned_cols=197  Identities=30%  Similarity=0.406  Sum_probs=173.6

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhh
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~   85 (229)
                      +++++|++++|++  +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++......  ..+++
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~   80 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR   80 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence            5899999999964  4799999999999999999999999999999999999999999999999987543211  12456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .++|++|++.+++.+|+.||+.+......     ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  160 (216)
T TIGR00960        81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL  160 (216)
T ss_pred             hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            79999999999999999999987543221     1234567899999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d  206 (216)
T TIGR00960       161 LADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH  206 (216)
T ss_pred             EEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999987778999999999999988776

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=4.3e-53  Score=371.26  Aligned_cols=197  Identities=27%  Similarity=0.401  Sum_probs=178.8

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|.++....  ...++.+
T Consensus         5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~~~i   82 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--RHARQRV   82 (306)
T ss_pred             CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch--HHHHhcE
Confidence            36899999999999999999999999999999999999999999999999999999999999999986543  2356789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+++.+|+.||+.++...++.     ..++.++++.+++.+..++++.+||+|||||++||+||+.+|++|||
T Consensus        83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllL  162 (306)
T PRK13537         83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVL  162 (306)
T ss_pred             EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            9999999999999999999876654321     12345788999999899999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+|||+.+++.+++++++++++|+|||++||++++++.+||
T Consensus       163 DEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d  206 (306)
T PRK13537        163 DEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCD  206 (306)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            99999999999999999999998789999999999999999875

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-54  Score=366.12  Aligned_cols=194  Identities=29%  Similarity=0.391  Sum_probs=177.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE---eCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH---DITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~---~~~~~~~~~~~~~~   86 (229)
                      +++++|+++.|+...+++|||++|+.||.+|++||||||||||||+|+|++.|++|.|.++|+   |.++.   ....++
T Consensus         2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~---~~~~R~   78 (345)
T COG1118           2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL---AVRDRK   78 (345)
T ss_pred             ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc---chhhcc
Confidence            689999999999999999999999999999999999999999999999999999999999999   55442   334578


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      +||++|+..+|+++||.|||+|+....+       ...++.++|+.++|+.+.+++|.+|||||||||+|||||+.+|++
T Consensus        79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v  158 (345)
T COG1118          79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV  158 (345)
T ss_pred             eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence            9999999999999999999999875431       124567889999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||..-+..+...|+++.++ |.|+++||||.+++.+.+|
T Consensus       159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~lad  206 (345)
T COG1118         159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELAD  206 (345)
T ss_pred             EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcc
Confidence            9999999999999999999999998766 9999999999999988764

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.4e-52  Score=354.52  Aligned_cols=196  Identities=29%  Similarity=0.418  Sum_probs=173.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhcce
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~~~   88 (229)
                      |+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....  ...++..++
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~   80 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG   80 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence            578999999998899999999999999999999999999999999999999999999999998865332  123456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++.+++.+|+.||+.+..... . .    ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llll  160 (235)
T cd03261          81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLY  160 (235)
T ss_pred             EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            9999999999999999998753321 1 1    12356789999999888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++++++++ |+|||++||+++++...+|
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d  205 (235)
T cd03261         161 DEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD  205 (235)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence            9999999999999999999998764 8999999999999988775

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-52  Score=372.26  Aligned_cols=197  Identities=24%  Similarity=0.343  Sum_probs=175.2

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~   83 (229)
                      ||+++||+++|++    .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++......  ...
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~   80 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA   80 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            5899999999952    4799999999999999999999999999999999999999999999999998764321  224


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      ++.++|++|+..+++..||+||+.++....+.     ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~  160 (343)
T TIGR02314        81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence            56899999999999999999999886543221     2345688999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.+++.+.+++++++++ |.|||++||+++.+.+++|
T Consensus       161 iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d  209 (343)
T TIGR02314       161 VLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICD  209 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999998765 8999999999999988774

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.7e-53  Score=350.55  Aligned_cols=201  Identities=31%  Similarity=0.435  Sum_probs=179.3

Q ss_pred             CcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--hhhhhhh
Q 027067            9 PRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--IFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~~~~~~~   85 (229)
                      .+|+++||++.| +++++|++|||+|++||+++|+||||||||||||+|+|+..|++|+|.++|.++....  ..+++++
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~   81 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR   81 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence            479999999999 8899999999999999999999999999999999999999999999999999887643  2456788


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHH--------hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEV--------LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~--------~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ++||++|++++.+.++|++|+..+..        +.+     ....+.++|+++|+.+...++..+|||||+|||+||||
T Consensus        82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa  161 (258)
T COG3638          82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA  161 (258)
T ss_pred             hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence            99999999999999999999975321        111     12345678999999999999999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhccCC
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMNLRL  209 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~~~~  209 (229)
                      |+++|+++|.|||+++|||.+.+.+++.+++.. ++|.|||++.|+++.+.+.++--+
T Consensus       162 L~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Rii  219 (258)
T COG3638         162 LVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRII  219 (258)
T ss_pred             HhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhhe
Confidence            999999999999999999999999999999875 458999999999999999886444

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2e-52  Score=373.68  Aligned_cols=194  Identities=25%  Similarity=0.372  Sum_probs=175.7

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++.....   .++.++
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig   79 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIA   79 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEE
Confidence            69999999999 78899999999999999999999999999999999999999999999999999876432   346899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++++||+||+.+.....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD  159 (356)
T PRK11650         80 MVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD  159 (356)
T ss_pred             EEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999999999987543221     234568899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+..++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus       160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D  203 (356)
T PRK11650        160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD  203 (356)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999988665 8999999999999988764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=3.4e-52  Score=347.19  Aligned_cols=198  Identities=28%  Similarity=0.340  Sum_probs=174.5

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhc
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~   86 (229)
                      ||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......  ..++..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR   80 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence            58999999999 567899999999999999999999999999999999999999999999999988653221  124567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++..|+.||+.+......     ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (214)
T TIGR02673        81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL  160 (214)
T ss_pred             eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence            9999999999988999999987543221     12345678999999888899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||++||+.+++.+.+++++++++|+|||++||+++++...+|.
T Consensus       161 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~  206 (214)
T TIGR02673       161 ADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHR  206 (214)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence            9999999999999999999999877789999999999999887763

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.4e-53  Score=350.14  Aligned_cols=198  Identities=27%  Similarity=0.364  Sum_probs=174.6

Q ss_pred             CcEEEEeEEEEeCCee----eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            9 PRLLLKNVSCMRNAQQ----ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~----iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      ++++++|+++.|+.+.    +|++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|+++|+++........+.
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~   81 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY   81 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence            5799999999998877    999999999999999999999999999999999999999999999998876643333456


Q ss_pred             hcceEeeccc--ccCCCCCHHHhHHHHHHhc---CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           85 LQLNWLSLKD--AVKEKFTVLDNVQWFEVLE---GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        85 ~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~---~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +.+.+++|++  ++.|..||.+-+.-.....   ..+.++.++++.+||. .+++++|++|||||+|||||||||+.+|+
T Consensus        82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk  161 (252)
T COG1124          82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK  161 (252)
T ss_pred             cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence            6788999986  6888999998876544321   1234478899999995 77899999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+|||||+||...+..+++++.+++++ +.|+|+||||+..++..||
T Consensus       162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cd  210 (252)
T COG1124         162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCD  210 (252)
T ss_pred             EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhh
Confidence            99999999999999999999999998665 7899999999999999885

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=3.7e-52  Score=369.88  Aligned_cols=196  Identities=27%  Similarity=0.367  Sum_probs=177.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....  ...+..++
T Consensus        40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~--~~~~~~ig  117 (340)
T PRK13536         40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA--RLARARIG  117 (340)
T ss_pred             eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch--HHHhccEE
Confidence            5799999999999999999999999999999999999999999999999999999999999999986432  23566899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+|+.||+.++...++.     .....++++.+++.+..++++.+|||||||||+||+||+.+|++||||
T Consensus       118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD  197 (340)
T PRK13536        118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD  197 (340)
T ss_pred             EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            999999999999999999876544321     123456789999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||+.++..+++++++++++|+|||++||+++++++++|
T Consensus       198 EPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d  240 (340)
T PRK13536        198 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD  240 (340)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            9999999999999999999998789999999999999999875

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=3.2e-52  Score=348.27  Aligned_cols=195  Identities=32%  Similarity=0.433  Sum_probs=170.8

Q ss_pred             EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh
Q 027067           11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY   83 (229)
Q Consensus        11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~   83 (229)
                      |+++||+++|++    +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++......   ...
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~   80 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR   80 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence            578999999986    7899999999999999999999999999999999999999999999999987643211   112


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +..++|++|++.+++.+|+.||+.+.......     ...+.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (218)
T cd03255          81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK  160 (218)
T ss_pred             hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence            45799999999999999999999875433221     2345678999999988899999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.+++.+.+++.++++ .|+|||++||++++++ .+|
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d  208 (218)
T cd03255         161 IILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YAD  208 (218)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhc
Confidence            9999999999999999999999999876 5899999999999886 665

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=2.5e-52  Score=347.97  Aligned_cols=194  Identities=31%  Similarity=0.407  Sum_probs=172.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....   ..+..++|+
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~i~~v   77 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP---PERRNIGMV   77 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc---hhhccEEEE
Confidence            57899999999889999999999999999999999999999999999999999999999999886432   124578999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+......     ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP  157 (213)
T cd03259          78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP  157 (213)
T ss_pred             cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999988888999999987543221     122456789999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.++++ .|.|||++||+++++.+++|.
T Consensus       158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~  200 (213)
T cd03259         158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR  200 (213)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence            999999999999999999866 489999999999999887763

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=3.5e-52  Score=345.90  Aligned_cols=193  Identities=25%  Similarity=0.445  Sum_probs=173.6

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++|+++||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++...   ...+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---~~~~~~i~~~   77 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN---IEALRRIGAL   77 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch---HHHHhhEEEe
Confidence            5789999999888999999999999999999999999999999999999999999999999887542   2345679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      +|++.+++..|+.||+.++..... ...++.++++.+++.+..++++.+|||||||||+||||++.+|++|||||||++|
T Consensus        78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L  157 (208)
T cd03268          78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL  157 (208)
T ss_pred             cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence            999999989999999987643322 2335677899999998899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus       158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d  194 (208)
T cd03268         158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD  194 (208)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence            9999999999999987778999999999999988776

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-52  Score=370.72  Aligned_cols=196  Identities=27%  Similarity=0.392  Sum_probs=177.0

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   .++.+
T Consensus         4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~i   80 (351)
T PRK11432          4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI---QQRDI   80 (351)
T ss_pred             CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCE
Confidence            358999999999999999999999999999999999999999999999999999999999999999875432   34679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+++++||+||+.|.....+     ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL  160 (351)
T PRK11432         81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF  160 (351)
T ss_pred             EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            999999999999999999998754322     123566789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+..++.+.+.++++.++ |.|+|+||||++++..++|
T Consensus       161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD  205 (351)
T PRK11432        161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD  205 (351)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence            9999999999999999999998654 8999999999999877654

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=4.7e-52  Score=351.16  Aligned_cols=197  Identities=29%  Similarity=0.409  Sum_probs=173.5

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v   80 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT   80 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence            47899999999888999999999999999999999999999999999999999999999999886543222223568999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC---------------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG---------------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~---------------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      +|++.+++.+|+.||+.+......               ....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus        81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  160 (236)
T cd03219          81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT  160 (236)
T ss_pred             ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            999999999999999987543211               11235678899999988899999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      +|++|||||||++||+.+++.+.+++++++++|+|||++||+++++..++|.
T Consensus       161 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~  212 (236)
T cd03219         161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADR  212 (236)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCE
Confidence            9999999999999999999999999999877789999999999999887763

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-53  Score=344.04  Aligned_cols=196  Identities=23%  Similarity=0.379  Sum_probs=182.0

Q ss_pred             cEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      |+++.+++++|+..+ +++||||+++.||++||+|||||||||+||+|++++.|++|.|+++|.+....+  ..+++++|
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p--~~vrr~IG   78 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP--SFVRRKIG   78 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh--HHHhhhcc
Confidence            689999999999876 999999999999999999999999999999999999999999999999987654  34678899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      .++.+..+|..+|++||+.|+..+++.     +.+..++.+.++|.+.+++++.++|.||||||+|||||+++|++++||
T Consensus        79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD  158 (245)
T COG4555          79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD  158 (245)
T ss_pred             eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc
Confidence            999888999999999999998876542     345667889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||||..++..+.+++.+++++|++||++||++.+++..||.
T Consensus       159 EP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr  202 (245)
T COG4555         159 EPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR  202 (245)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe
Confidence            99999999999999999999999999999999999999998873

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=6.9e-52  Score=347.04  Aligned_cols=195  Identities=24%  Similarity=0.358  Sum_probs=173.6

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++....  ...+..++|+
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~   78 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP--REVRRRIGIV   78 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh--HHHhhcEEEe
Confidence            57999999999899999999999999999999999999999999999999999999999999875422  2345679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.+|+.+.......     ...+.++++.+++.+..++++.+|||||||||+||||++.+|++||||||
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEP  158 (220)
T cd03265          79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEP  158 (220)
T ss_pred             cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999999999999999875433221     22456789999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.+++++ |+|||++||+++++...+|.
T Consensus       159 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~  201 (220)
T cd03265         159 TIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDR  201 (220)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            9999999999999999998776 89999999999999988763

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.8e-52  Score=369.84  Aligned_cols=195  Identities=30%  Similarity=0.383  Sum_probs=177.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.....   .++.++
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~---~~r~ig   79 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP---QKRDYG   79 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999865432   356799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+|+++||.||+.|+....+     ...++.++++.++|.++.++++.+|||||||||+|||||+.+|++||||
T Consensus        80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD  159 (353)
T TIGR03265        80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD  159 (353)
T ss_pred             EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999999999999998754322     1235678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+..++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus       160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d  203 (353)
T TIGR03265       160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD  203 (353)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence            999999999999999999987654 8999999999999988765

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=6.4e-52  Score=346.45  Aligned_cols=195  Identities=27%  Similarity=0.432  Sum_probs=174.5

Q ss_pred             cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067           10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      +++++||+++|+++    ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++....  ..++.
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~   78 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEARR   78 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH--HHHHh
Confidence            48899999999876    8999999999999999999999999999999999999999999999999886421  23456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .++|++|++.+++.+|+.||+.+......     ....+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        79 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il  158 (218)
T cd03266          79 RLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL  158 (218)
T ss_pred             hEEEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence            79999999999998999999987543322     1234567899999998999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus       159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d  204 (218)
T cd03266         159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD  204 (218)
T ss_pred             EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence            9999999999999999999999987778999999999999988776

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6e-52  Score=343.94  Aligned_cols=191  Identities=26%  Similarity=0.359  Sum_probs=168.7

Q ss_pred             EEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           12 LLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        12 ~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      +++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..    ...+..++|+
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~i~~~   76 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA----KERRKSIGYV   76 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh----HHhhcceEEE
Confidence            47899999987 889999999999999999999999999999999999999999999999998753    2244579999


Q ss_pred             ecccc-cCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           91 SLKDA-VKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        91 ~~~~~-~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      +|++. .+...|+.||+.++..... ...++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++
T Consensus        77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  156 (205)
T cd03226          77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG  156 (205)
T ss_pred             ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence            99864 2345799999987543322 123567889999999889999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+++.+.+++++++++|.|||++||+++++.+.+|
T Consensus       157 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d  194 (205)
T cd03226         157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD  194 (205)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999987778999999999999988776

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.2e-51  Score=370.57  Aligned_cols=197  Identities=27%  Similarity=0.423  Sum_probs=177.1

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.....   .++.
T Consensus        11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~   87 (375)
T PRK09452         11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA---ENRH   87 (375)
T ss_pred             CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHCC
Confidence            4467999999999999999999999999999999999999999999999999999999999999999865432   3467


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++.+||.||+.|.....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||
T Consensus        88 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL  167 (375)
T PRK09452         88 VNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL  167 (375)
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999986543221     2345678999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||...++.+.+.|+++.++ |.|+|+||||++++...+|
T Consensus       168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD  213 (375)
T PRK09452        168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD  213 (375)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999998664 8999999999999887664

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-52  Score=340.55  Aligned_cols=197  Identities=26%  Similarity=0.367  Sum_probs=174.2

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-----cEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-----GEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-----G~I~~~g~~~~~~~~-~~   81 (229)
                      .+.++++||+++||++.+|++||++|++++++|++||||||||||||+++.+.....     |+|.++|+++..... ..
T Consensus         5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~   84 (253)
T COG1117           5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV   84 (253)
T ss_pred             cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence            357999999999999999999999999999999999999999999999999987654     999999999876421 23


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ..++++|+++|.++.|| +|++||+.++.+..+..     +.++..|+...|+    +.+++.+..||||||||+|||||
T Consensus        85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARa  163 (253)
T COG1117          85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARA  163 (253)
T ss_pred             HHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHH
Confidence            56889999999999999 89999999987765432     2355677777775    34678899999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|+|||||||||+|||.+...+.+++.+++ +.-|||+|||++..+..+.|
T Consensus       164 lAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD  216 (253)
T COG1117         164 LAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSD  216 (253)
T ss_pred             HhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhH
Confidence            999999999999999999999999999999997 46899999999999888765

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.4e-51  Score=361.19  Aligned_cols=196  Identities=27%  Similarity=0.374  Sum_probs=175.3

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+++++||+++|+++.+|+++||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....  ...+..++
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~   80 (303)
T TIGR01288         3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA--RLARVAIG   80 (303)
T ss_pred             cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH--HHHhhcEE
Confidence            4799999999999999999999999999999999999999999999999999999999999999875432  23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+|+.||+.++......     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  160 (303)
T TIGR01288        81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD  160 (303)
T ss_pred             EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999999999999999865433221     123456789999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||+.+++.+.+++.+++++|.|||++||+++++++++|
T Consensus       161 EPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d  203 (303)
T TIGR01288       161 EPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD  203 (303)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            9999999999999999999998789999999999999998775

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=1.5e-51  Score=347.32  Aligned_cols=196  Identities=30%  Similarity=0.431  Sum_probs=173.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++||+++|+++.+|+++||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL   80 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence            57899999999889999999999999999999999999999999999999999999999999876433222223468999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+.......     ...+.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||||
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP  160 (232)
T cd03218          81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEP  160 (232)
T ss_pred             cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            9999999999999999875432211     12345788999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.++++++++++.|||++||+++++.+.+|
T Consensus       161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d  201 (232)
T cd03218         161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD  201 (232)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999987778999999999999988876

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=2.3e-51  Score=341.95  Aligned_cols=196  Identities=27%  Similarity=0.345  Sum_probs=172.5

Q ss_pred             EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhcc
Q 027067           11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQL   87 (229)
Q Consensus        11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~~   87 (229)
                      ++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++......  ..++..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i   80 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI   80 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence            478999999964 6899999999999999999999999999999999999999999999999988653221  2245679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+++.+|+.||+.+.......     ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++||
T Consensus        81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  160 (214)
T cd03292          81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIA  160 (214)
T ss_pred             EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999876432211     12456788999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++++++++|+|||++||+++++.+.+|
T Consensus       161 DEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d  204 (214)
T cd03292         161 DEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRH  204 (214)
T ss_pred             eCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999987778999999999999988766

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=2.2e-51  Score=348.17  Aligned_cols=194  Identities=30%  Similarity=0.404  Sum_probs=172.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....   .+..++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~   78 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---QERNVGF   78 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---cccceEE
Confidence            5899999999998899999999999999999999999999999999999999999999999998764321   2357899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-----c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-----K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++.+++..|+.||+.+......     .    ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll  158 (239)
T cd03296          79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVL  158 (239)
T ss_pred             EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999999888999999987543211     1    123457789999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++ |+|||++||+++++...+|
T Consensus       159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d  205 (239)
T cd03296         159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD  205 (239)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999998765 8999999999999888765

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.7e-51  Score=344.57  Aligned_cols=197  Identities=25%  Similarity=0.330  Sum_probs=172.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV   80 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence            57899999999889999999999999999999999999999999999999999999999999886543322234569999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      +|++.+++.+|+.||+.+......   ......++++.+ ++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  160 (222)
T cd03224          81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS  160 (222)
T ss_pred             ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence            999999999999999987543321   112345677777 5777889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ++||+.+++.+.+++.+++++|.|||++||+++++..++|.
T Consensus       161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~  201 (222)
T cd03224         161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR  201 (222)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccE
Confidence            99999999999999999877789999999999999888763

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=2.2e-51  Score=344.02  Aligned_cols=191  Identities=33%  Similarity=0.443  Sum_probs=170.3

Q ss_pred             EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      |+++|++++|++    +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..      .+..
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~~   74 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPD   74 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------ccCc
Confidence            578999999987    789999999999999999999999999999999999999999999999998753      2356


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++.+|+.||+.+......     ....+.++++.+++.+..++++.+||||||||++|||||+.+|++||
T Consensus        75 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll  154 (220)
T cd03293          75 RGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL  154 (220)
T ss_pred             EEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            8999999988888999999987543221     12345678999999988899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||++||+.+++.+.+++.++.+ .|.|||++||+++++..++|.
T Consensus       155 LDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~  201 (220)
T cd03293         155 LDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADR  201 (220)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCE
Confidence            9999999999999999999999854 489999999999999887763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=2.3e-51  Score=341.80  Aligned_cols=197  Identities=26%  Similarity=0.415  Sum_probs=173.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcceE
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~~   89 (229)
                      ++++||+++|+++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ....++..++|
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM   80 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence            47899999999889999999999999999999999999999999999999999999999999875311 11234568999


Q ss_pred             eecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      ++|++.+++.+|+.||+.+... ...     ....+.++++.+++.+..++++.+|||||+||++||||++.+|++||||
T Consensus        81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  160 (213)
T cd03262          81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD  160 (213)
T ss_pred             EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            9999999988999999987532 111     1123567889999988899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||+|||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus       161 EP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~  204 (213)
T cd03262         161 EPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADR  204 (213)
T ss_pred             CCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            99999999999999999999877789999999999999887763

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=2.2e-51  Score=341.64  Aligned_cols=194  Identities=31%  Similarity=0.440  Sum_probs=169.6

Q ss_pred             EEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           12 LLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        12 ~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++|++++|++  +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~   79 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL-KELRRKVGL   79 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH-HHHHhhceE
Confidence            47899999987  889999999999999999999999999999999999999999999999998864322 234567999


Q ss_pred             eecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           90 LSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        90 ~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      ++|++. .++..|+.||+.+......     ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  159 (211)
T cd03225          80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD  159 (211)
T ss_pred             EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            999875 3567899999977543221     1223567889999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus       160 EPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d  202 (211)
T cd03225         160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD  202 (211)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999987778999999999999988776

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=4.6e-51  Score=342.47  Aligned_cols=197  Identities=29%  Similarity=0.363  Sum_probs=173.5

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhhhc
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~~~   86 (229)
                      ||+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......  ..++..
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~   80 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ   80 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence            48999999999 678899999999999999999999999999999999999999999999999988643211  124567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++..|+.||+.+.......     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus        81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll  160 (222)
T PRK10908         81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL  160 (222)
T ss_pred             eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999888889999999875432211     1234578899999888899999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+.+++.+.+++.++++++.|+|++||+++++..++|
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d  205 (222)
T PRK10908        161 ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSY  205 (222)
T ss_pred             EeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999987778999999999999988776

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-51  Score=344.89  Aligned_cols=196  Identities=26%  Similarity=0.413  Sum_probs=171.6

Q ss_pred             CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--h
Q 027067            9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--Q   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~   82 (229)
                      ++++++||+++|++    +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......  .
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   83 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE   83 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence            57999999999964    57999999999999999999999999999999999999999999999999986543211  1


Q ss_pred             h-hhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           83 Y-KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        83 ~-~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      . +..++|++|++.+++.+|+.||+.+......     ...++.++++.+|+.+..++++.+||||||||++||||++.+
T Consensus        84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~  163 (233)
T PRK11629         84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN  163 (233)
T ss_pred             HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence            2 2569999999999998999999987533211     123456789999999888999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~  204 (229)
                      |++|||||||++||+.+++.+.++++++++ +|.|||++||+++++..+
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~  212 (233)
T PRK11629        164 PRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM  212 (233)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence            999999999999999999999999999865 589999999999998775

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.4e-51  Score=341.34  Aligned_cols=192  Identities=28%  Similarity=0.436  Sum_probs=171.9

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..     ..+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-----~~~~~i~~~   75 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI-----AARNRIGYL   75 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH-----HHHccEEEe
Confidence            578999999998899999999999999999999999999999999999999999999999987642     234578999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+.......     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus        76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP  155 (210)
T cd03269          76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEP  155 (210)
T ss_pred             ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            9999999999999999875433221     23456789999999888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.++++++++++.|||++||+++++.+++|.
T Consensus       156 ~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~  197 (210)
T cd03269         156 FSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDR  197 (210)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhE
Confidence            999999999999999999877789999999999999887763

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=4.6e-51  Score=352.26  Aligned_cols=201  Identities=25%  Similarity=0.358  Sum_probs=175.0

Q ss_pred             CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067            6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY   83 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~   83 (229)
                      ++.++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......  ...
T Consensus         3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~   82 (269)
T PRK11831          3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV   82 (269)
T ss_pred             CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence            345689999999999989999999999999999999999999999999999999999999999999987643211  123


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +..++|++|++.+++.+|+.||+.+..... . .    ...+.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p  162 (269)
T PRK11831         83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEP  162 (269)
T ss_pred             hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999899999998643221 1 1    123456789999998899999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++.+++++ |.|||++|||++++.+++|
T Consensus       163 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d  212 (269)
T PRK11831        163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD  212 (269)
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhC
Confidence            999999999999999999999999998665 8999999999999988765

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=3.1e-51  Score=366.46  Aligned_cols=194  Identities=29%  Similarity=0.359  Sum_probs=175.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc--cEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA--GEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~--G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .|+++||+++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++  |+|+++|+++.....   .++.+
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~---~~r~i   81 (362)
T TIGR03258         5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP---HKRGL   81 (362)
T ss_pred             EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH---HHCCE
Confidence            5899999999999899999999999999999999999999999999999999999  999999999865332   34679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+++.+||+||+.|+....+.     ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL  161 (362)
T TIGR03258        82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL  161 (362)
T ss_pred             EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999999987543221     23466789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK--GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+..++.+.+.++++.++  |.|+|+||||++++...+|
T Consensus       162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~d  207 (362)
T TIGR03258       162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLAD  207 (362)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999998766  7899999999999887653

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=3.3e-51  Score=341.00  Aligned_cols=193  Identities=28%  Similarity=0.391  Sum_probs=171.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....   .+..++|+
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~   77 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMV   77 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEE
Confidence            478999999998899999999999999999999999999999999999999999999999998864322   23579999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++..|+.||+.+.......     ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++|||||
T Consensus        78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP  157 (213)
T cd03301          78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP  157 (213)
T ss_pred             ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999888889999999875432211     12345778999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |+|||+.+++.+.+++++++++ |.|||++||+++++...+|
T Consensus       158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d  199 (213)
T cd03301         158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD  199 (213)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence            9999999999999999998764 8999999999999888776

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4e-51  Score=339.04  Aligned_cols=192  Identities=34%  Similarity=0.694  Sum_probs=172.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....  ..++.+++|
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~--~~~~~~~~~   78 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR--DEYHQDLLY   78 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch--HHhhhheEE
Confidence            589999999999999999999999999999999999999999999999999999999999999876432  234567899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      +++++.+++.+|+.||+.+......  ....+.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||+
T Consensus        79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  158 (204)
T PRK13538         79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT  158 (204)
T ss_pred             eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            9999888888999999987654322  22346678999999888899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          168 ALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +||+.+++.+.+++.++++++.|||++||+++++..
T Consensus       159 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~  194 (204)
T PRK13538        159 AIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVAS  194 (204)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhcc
Confidence            999999999999999987778999999999988866

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=2.5e-51  Score=347.52  Aligned_cols=197  Identities=30%  Similarity=0.413  Sum_probs=171.6

Q ss_pred             EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhcc
Q 027067           11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQL   87 (229)
Q Consensus        11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~~   87 (229)
                      ++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....  ....+..+
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i   80 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI   80 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence            478999999987 889999999999999999999999999999999999999999999999998865431  12345679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHh--------cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVL--------EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~--------~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +|++|++.+++.+|+.||+.+....        ..     ....+.++++.+++.+..++++.+|||||||||+|||||+
T Consensus        81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  160 (241)
T cd03256          81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM  160 (241)
T ss_pred             EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999889999999763210        00     1123557789999988889999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      .+|++|||||||++||+.+++.+.+++.++++ .|+|||++||+++++..++|.
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~  214 (241)
T cd03256         161 QQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADR  214 (241)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            99999999999999999999999999999865 489999999999999987763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=3.8e-51  Score=345.18  Aligned_cols=199  Identities=27%  Similarity=0.374  Sum_probs=174.7

Q ss_pred             cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067           10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~   83 (229)
                      +|+++|++++|+++    ++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......  ...
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA   80 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence            58999999999876    899999999999999999999999999999999999999999999999988653221  123


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +..++|++|++.+++.+|+.||+.+.......     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  160 (233)
T cd03258          81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK  160 (233)
T ss_pred             HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            56799999999999889999999875432211     2245678999999988999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccC
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLR  208 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~  208 (229)
                      ++||||||++||+.+++.+.+++.+++++ |+|||++||+++++..++|.-
T Consensus       161 lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i  211 (233)
T cd03258         161 VLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV  211 (233)
T ss_pred             EEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence            99999999999999999999999998765 899999999999998877643

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-51  Score=362.97  Aligned_cols=197  Identities=27%  Similarity=0.373  Sum_probs=174.4

Q ss_pred             cEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067           10 RLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~   83 (229)
                      ||+++||+++|+    ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..  ...
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~   80 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA   80 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence            589999999997    46899999999999999999999999999999999999999999999999998754321  123


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +..++|++|++.+++.+|+.||+.+.....+.     ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|+
T Consensus        81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~  160 (343)
T PRK11153         81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK  160 (343)
T ss_pred             hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            56799999999999999999999876443221     1245678999999989999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.+++.+.+++++++++ |.|||++||+++++.+++|
T Consensus       161 iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d  209 (343)
T PRK11153        161 VLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICD  209 (343)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999998654 8999999999999988764

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=3.6e-51  Score=365.23  Aligned_cols=194  Identities=27%  Similarity=0.391  Sum_probs=175.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....   ..++.++|
T Consensus         2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i~~   78 (353)
T PRK10851          2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH---ARDRKVGF   78 (353)
T ss_pred             EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---HHHCCEEE
Confidence            589999999999999999999999999999999999999999999999999999999999999986532   23457999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++.+++.+||.||+.+.....    .     ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus        79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~ll  158 (353)
T PRK10851         79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQIL  158 (353)
T ss_pred             EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            999999999999999998864321    1     1234567899999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+..++.+.+.+.+++++ |.|+|+||||++++..++|
T Consensus       159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D  205 (353)
T PRK10851        159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD  205 (353)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999998765 8999999999999988775

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-51  Score=366.79  Aligned_cols=194  Identities=26%  Similarity=0.396  Sum_probs=174.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   .++.++|
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---~~~~i~~   79 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGM   79 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---hHCCEEE
Confidence            5999999999999899999999999999999999999999999999999999999999999999865332   2457999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||.||+.+.....+.     ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE  159 (369)
T PRK11000         80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  159 (369)
T ss_pred             EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999999999999999886543221     2346678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.+.++++.++ |.|+|+||||++++...+|
T Consensus       160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d  202 (369)
T PRK11000        160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD  202 (369)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999998664 8999999999999888764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-51  Score=347.33  Aligned_cols=201  Identities=30%  Similarity=0.403  Sum_probs=176.3

Q ss_pred             CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ++++++|++++|++. .+|+++||+|++||+++|+|+||||||||+++++|+++|++|+|.++|.++.........++++
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v   81 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV   81 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence            479999999999765 9999999999999999999999999999999999999999999999999876311224567789


Q ss_pred             eEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           88 NWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        88 ~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ||++|++. .+..-||.+.++|+....+     ...++.++++.+|+.++++++|++|||||||||+||.+|+++|++||
T Consensus        82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili  161 (235)
T COG1122          82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL  161 (235)
T ss_pred             EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence            99999872 2334599999998765432     22456789999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCC
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRL  209 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~  209 (229)
                      ||||||+||+.+++.+.+++.+++++ |+|+|++|||++.+...+|.-+
T Consensus       162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~  210 (235)
T COG1122         162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV  210 (235)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEE
Confidence            99999999999999999999999877 6899999999999999775433

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=3.9e-51  Score=369.71  Aligned_cols=197  Identities=25%  Similarity=0.362  Sum_probs=177.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..... ...+++++
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~-~~~~~~ig   80 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA-RAASRRVA   80 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH-HHHhcceE
Confidence            47999999999999999999999999999999999999999999999999999999999999999876443 34566799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHh-----c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVL-----E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~-----~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      |++|++.+++.+|+.||+.+....     .  .  ....+.++++.+++.++.++++.+|||||||||+|||||+++|++
T Consensus        81 ~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i  160 (402)
T PRK09536         81 SVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV  160 (402)
T ss_pred             EEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            999999998999999999864311     1  1  123456789999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||+.++..+.+++++++++|.|||++|||++++...+|
T Consensus       161 LLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad  207 (402)
T PRK09536        161 LLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD  207 (402)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence            99999999999999999999999998778999999999999988775

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-51  Score=347.96  Aligned_cols=197  Identities=30%  Similarity=0.410  Sum_probs=171.5

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhhc
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~~   86 (229)
                      +++++||+++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....  ....+..
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   80 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR   80 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence            588999999998 7889999999999999999999999999999999999999999999999998764321  1224567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHh---------c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVL---------E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~---------~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ++|++|++.+++.+|+.||+.+....         .  .  ...++.++++.+++.+..++++.+|||||||||+|||||
T Consensus        81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al  160 (243)
T TIGR02315        81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL  160 (243)
T ss_pred             eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999889999999753210         0  0  112456788999998888999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.+++++ |+|||++||+++++.+.+|
T Consensus       161 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d  214 (243)
T TIGR02315       161 AQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD  214 (243)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence            9999999999999999999999999999998654 8999999999999988765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.6e-51  Score=343.12  Aligned_cols=190  Identities=26%  Similarity=0.378  Sum_probs=166.6

Q ss_pred             EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067           12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS   91 (229)
Q Consensus        12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~   91 (229)
                      +++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.      ..+..++|++
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~------~~~~~i~~v~   74 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE------KERKRIGYVP   74 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH------HHHhheEEec
Confidence            4789999999888999999999999999999999999999999999999999999999998763      2345799999


Q ss_pred             cccccC--CCCCHHHhHHHHHHhc-------C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           92 LKDAVK--EKFTVLDNVQWFEVLE-------G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        92 ~~~~~~--~~~tv~e~l~~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      |++.+.  ...|+.||+.+.....       .  ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  154 (213)
T cd03235          75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLL  154 (213)
T ss_pred             cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            987763  3379999998643211       0  1124567889999988899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||||++||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus       155 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~  201 (213)
T cd03235         155 LLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR  201 (213)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence            99999999999999999999999877789999999999999887763

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.1e-50  Score=339.74  Aligned_cols=196  Identities=26%  Similarity=0.426  Sum_probs=169.4

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~   83 (229)
                      +|+++||+++|++    +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......  .+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL   80 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence            4789999999964    57999999999999999999999999999999999999999999999999886543211  12


Q ss_pred             h-hcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           84 K-LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        84 ~-~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      + ..++|++|++.+++..|+.||+.+......     ....+.++++.+++.+..++++.+|||||||||+|||||+.+|
T Consensus        81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  160 (221)
T TIGR02211        81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP  160 (221)
T ss_pred             HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence            2 569999999988888999999987432211     1223567899999998899999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++.++++ .+.|||++||++++++. +|
T Consensus       161 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d  209 (221)
T TIGR02211       161 SLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LD  209 (221)
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cC
Confidence            99999999999999999999999999865 48999999999998865 35

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=8.6e-51  Score=344.82  Aligned_cols=197  Identities=24%  Similarity=0.358  Sum_probs=173.3

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++
T Consensus         1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (242)
T TIGR03411         1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG   80 (242)
T ss_pred             CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence            47899999999998899999999999999999999999999999999999999999999999998765432222345699


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-------------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-------------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      |++|++.+++.+|+.||+.+......             ....+.++++.+++.+..++++.+|||||+|||+||||++.
T Consensus        81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~  160 (242)
T TIGR03411        81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQ  160 (242)
T ss_pred             EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            99999999999999999987532110             12245678899999988899999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.+++.+.++++++++ ++|||++||+++++.+.+|
T Consensus       161 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d  210 (242)
T TIGR03411       161 DPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIAD  210 (242)
T ss_pred             CCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999999999999865 6899999999999988775

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-51  Score=347.42  Aligned_cols=198  Identities=25%  Similarity=0.342  Sum_probs=173.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.........+..++
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV   83 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence            48999999999998999999999999999999999999999999999999999999999999998865432222334588


Q ss_pred             EeecccccCCCCCHHHhHHHHHHh----------c------Cc----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHH
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVL----------E------GK----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~----------~------~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~  148 (229)
                      |++|++.+++.+|+.||+.+....          .      ..    ...+.++++.+|+.+..++++.+|||||||||+
T Consensus        84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  163 (255)
T PRK11300         84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE  163 (255)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence            999999999999999999864210          0      00    123456788999988899999999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|++|||||||++||+.+++.+.++|.+++++ |.|||++||+++++.+++|
T Consensus       164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d  222 (255)
T PRK11300        164 IARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD  222 (255)
T ss_pred             HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999998765 8999999999999988775

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=8.5e-51  Score=355.94  Aligned_cols=194  Identities=24%  Similarity=0.411  Sum_probs=175.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .++++|++++|+++.+|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....  ...+..++|
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~--~~~~~~ig~   79 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP--KEVQRNIGY   79 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh--HHHHhceEE
Confidence            489999999999999999999999999999999999999999999999999999999999999886532  234567999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+|+.||+.+.....+.     ..++.++++.+|+.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDE  159 (301)
T TIGR03522        80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDE  159 (301)
T ss_pred             ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99999999999999999876654321     2346678999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+|||+.+++.++++++++++ ++|||++||+++++++.+|
T Consensus       160 Pt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~~~~~~~d  200 (301)
T TIGR03522       160 PTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQEVEAICD  200 (301)
T ss_pred             CcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHHhCC
Confidence            9999999999999999999865 7999999999999999775

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1e-50  Score=335.61  Aligned_cols=194  Identities=29%  Similarity=0.487  Sum_probs=171.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ||+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...  ...++.+++|
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~--~~~~~~~i~~   78 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD--LCTYQKQLCF   78 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC--HHHHHhheEE
Confidence            58999999999988999999999999999999999999999999999999999999999999987542  1235568999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      ++|+..+++..|+.||+.+..........+.++++.+++.+..++++.+||+||+||++||||++.+|++|||||||++|
T Consensus        79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L  158 (200)
T PRK13540         79 VGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL  158 (200)
T ss_pred             eccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence            99998888889999999875322222234677899999988889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+++.+.+++.+++++|.|||++||+...+.. +|
T Consensus       159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d  194 (200)
T PRK13540        159 DELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD  194 (200)
T ss_pred             CHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence            9999999999999987778999999999888755 44

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-51  Score=344.72  Aligned_cols=197  Identities=24%  Similarity=0.367  Sum_probs=174.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~   82 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY   82 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence            79999999999988999999999999999999999999999999999999999999999999988654322223467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      ++|++.+++.+|+.||+.+......      ....+.++++.+++.+..++++.+|||||+|||+|||||+.+|++||||
T Consensus        83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (241)
T PRK10895         83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD  162 (241)
T ss_pred             eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            9999999988999999986532211      1123567889999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.+++..++++|.|||++||+++++.+.+|
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d  205 (241)
T PRK10895        163 EPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE  205 (241)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence            9999999999999999999988779999999999999988875

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=7.7e-51  Score=336.72  Aligned_cols=198  Identities=34%  Similarity=0.575  Sum_probs=175.1

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++||++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++....  ...+.+++|+
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~   78 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR--DSIARGLLYL   78 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc--HHhhhheEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999875422  2345679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      +|++.+++..|+.||+.++... .......++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||
T Consensus        79 ~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD  157 (201)
T cd03231          79 GHAPGIKTTLSVLENLRFWHAD-HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD  157 (201)
T ss_pred             ccccccCCCcCHHHHHHhhccc-ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence            9998888889999999875321 123456778899999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCC
Q 027067          171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPP  211 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~  211 (229)
                      +.+++.+.+++.+++++|.|+|++||+...+.++++..+.+
T Consensus       158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            99999999999998777899999999998888877655443

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.2e-50  Score=343.66  Aligned_cols=197  Identities=25%  Similarity=0.373  Sum_probs=173.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~   88 (229)
                      +|+++|++++|+++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++..++
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~   80 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG   80 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence            5889999999998899999999999999999999999999999999999999999999999998864221 123456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++.+++.+|+.||+.+... ...     ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||
T Consensus        81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll  160 (240)
T PRK09493         81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF  160 (240)
T ss_pred             EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence            99999999988999999976432 111     112356789999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++.+++++|+|||++||+++++..++|
T Consensus       161 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d  204 (240)
T PRK09493        161 DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS  204 (240)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999987778999999999999988765

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=7.7e-51  Score=338.52  Aligned_cols=192  Identities=31%  Similarity=0.478  Sum_probs=171.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|+++|+++....  ..++..++|+
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~   77 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP--QKLRRRIGYL   77 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch--HHHHhheEEe
Confidence            57999999999889999999999999 99999999999999999999999999999999998876433  3345679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+.......     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus        78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  157 (211)
T cd03264          78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEP  157 (211)
T ss_pred             cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999999889999999875433211     23456789999998888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus       158 t~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d  197 (211)
T cd03264         158 TAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCN  197 (211)
T ss_pred             cccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCC
Confidence            999999999999999999876 5899999999999988776

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=8.6e-51  Score=341.75  Aligned_cols=194  Identities=30%  Similarity=0.408  Sum_probs=169.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-----CCCccEEEEcCEeCCCCch-hhhhh
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-----KPSAGEILWNGHDITQSGI-FHQYK   84 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-----~p~~G~I~~~g~~~~~~~~-~~~~~   84 (229)
                      |+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|++     +|++|+|+++|+++..... ....+
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR   80 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence            57899999999889999999999999999999999999999999999999     9999999999998764321 12345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCC--CCCCChhHHHHHHHHHHHhcC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEK--ARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~--~~~LSgGqkqRv~lAral~~~  156 (229)
                      ..++|++|++.++ .+|+.||+.+......      ...++.++++.+++.+..+++  +.+|||||||||+|||||+.+
T Consensus        81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~  159 (227)
T cd03260          81 RRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANE  159 (227)
T ss_pred             hhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcC
Confidence            6799999998888 7899999987543221      123456788999998777776  599999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+++++++++ .|||++||+++++...+|
T Consensus       160 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d  208 (227)
T cd03260         160 PEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVAD  208 (227)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCC
Confidence            9999999999999999999999999998776 899999999999888776

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-50  Score=363.83  Aligned_cols=196  Identities=31%  Similarity=0.413  Sum_probs=175.7

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++|++++|+++.+|+++||+|++||+++|+||||||||||||+|+|+.+|++|+|+++|+++....   ..++.+
T Consensus        17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i   93 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---PYQRPI   93 (377)
T ss_pred             CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC---HHHCCE
Confidence            35799999999999889999999999999999999999999999999999999999999999999986543   245689


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++.+|+++||.||+.+.....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||
T Consensus        94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLL  173 (377)
T PRK11607         94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLL  173 (377)
T ss_pred             EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999999999999999999986543221     23456789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||...++.+.+.+.++.+ .|.|+|+||||++++...+|
T Consensus       174 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laD  218 (377)
T PRK11607        174 DEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG  218 (377)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence            999999999999999988888654 58999999999999888765

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-50  Score=346.58  Aligned_cols=191  Identities=26%  Similarity=0.320  Sum_probs=170.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ||+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...      ...++|
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~   74 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------GAERGV   74 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------CCcEEE
Confidence            58999999999988999999999999999999999999999999999999999999999999987532      134799


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++..|+.||+.+.....+.     ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE  154 (255)
T PRK11248         75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDE  154 (255)
T ss_pred             EeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            99999888889999999865332211     1245678999999888899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.+++.++. +.|+|||++||+++++...+|
T Consensus       155 Pt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d  197 (255)
T PRK11248        155 PFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT  197 (255)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999974 458999999999999988765

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=1.1e-50  Score=339.32  Aligned_cols=194  Identities=29%  Similarity=0.428  Sum_probs=171.9

Q ss_pred             EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      |+++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++....  ..++..++
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--~~~~~~i~   78 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR--KAARQSLG   78 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch--HHHhhhEE
Confidence            578999999987  78999999999999999999999999999999999999999999999999876432  33456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++..|+.||+.+.......     ...+.++++.+++.+..++++.+||+||||||+|||||+.+|++||||
T Consensus        79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  158 (220)
T cd03263          79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD  158 (220)
T ss_pred             EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence            999999998899999999875433221     123567889999988889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||++||+.+++.+.++++++++ +.|||++||+++.+.+++|.
T Consensus       159 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~  201 (220)
T cd03263         159 EPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDR  201 (220)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCE
Confidence            99999999999999999999865 58999999999999887763

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=2.5e-50  Score=339.16  Aligned_cols=198  Identities=24%  Similarity=0.331  Sum_probs=171.3

Q ss_pred             CCcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--
Q 027067            8 LPRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--   81 (229)
                      .++|+++||+++|++    .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......  
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~   83 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA   83 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence            358999999999975    36999999999999999999999999999999999999999999999999886543211  


Q ss_pred             hh-hhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           82 QY-KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        82 ~~-~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      .+ ...++|++|++.+++.+|+.||+.+......     ...++.++++.+++.+..++++.+||||||||++|||||+.
T Consensus        84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~  163 (228)
T PRK10584         84 KLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNG  163 (228)
T ss_pred             HHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence            12 2469999999999998999999976532221     12345678999999988899999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||+|||+.+++.+.+++.+++++ |.|||++||++++++. +|
T Consensus       164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d  214 (228)
T PRK10584        164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CD  214 (228)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CC
Confidence            99999999999999999999999999998654 8899999999998754 55

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.9e-50  Score=344.28  Aligned_cols=197  Identities=25%  Similarity=0.353  Sum_probs=173.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-------hhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-------IFHQ   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-------~~~~   82 (229)
                      +++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....       ....
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   82 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ   82 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence            799999999999889999999999999999999999999999999999999999999999999875321       0123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHH-hcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEV-LEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      .+..++|++|++.+++..|+.||+.+... ... .    ...+.++++.+++....++++.+|||||||||+|||||+.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~  162 (250)
T PRK11264         83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR  162 (250)
T ss_pred             hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence            45679999999999988999999976432 111 1    12356778999998888999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+++.++.++|.|||++||+++++.+++|
T Consensus       163 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d  212 (250)
T PRK11264        163 PEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD  212 (250)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence            99999999999999999999999999987778999999999999988765

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-50  Score=348.13  Aligned_cols=193  Identities=30%  Similarity=0.340  Sum_probs=171.6

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++|+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.      ..+..
T Consensus         9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~------~~~~~   82 (257)
T PRK11247          9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA------EARED   82 (257)
T ss_pred             CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH------HhhCc
Confidence            446899999999999889999999999999999999999999999999999999999999999987753      23457


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ++|++|++.+++..|+.||+.+... .....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        83 i~~v~q~~~l~~~~tv~enl~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt  161 (257)
T PRK11247         83 TRLMFQDARLLPWKKVIDNVGLGLK-GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL  161 (257)
T ss_pred             eEEEecCccCCCCCcHHHHHHhccc-chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            8999999999888999999986421 112235677899999998899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||+.+++.+.+++.++.+ .+.|||++|||++++..++|
T Consensus       162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d  202 (257)
T PRK11247        162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD  202 (257)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999998754 58999999999999887653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=2e-50  Score=337.23  Aligned_cols=198  Identities=31%  Similarity=0.541  Sum_probs=175.9

Q ss_pred             CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      .+..++|+++|++++|+++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...    ..+
T Consensus         6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~~~   81 (214)
T PRK13543          6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRS   81 (214)
T ss_pred             CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----hhh
Confidence            3455789999999999988999999999999999999999999999999999999999999999999987642    123


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ..++|++|++.+++.+|+.||+.+.......  .....++++.+++.+..++++.+||+||||||+||||++.+|++|||
T Consensus        82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  161 (214)
T PRK13543         82 RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLL  161 (214)
T ss_pred             hceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4689999998888889999999875433221  23346788999998888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++.+++++|.|||++||+++++.++++
T Consensus       162 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~  205 (214)
T PRK13543        162 DEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT  205 (214)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence            99999999999999999999988888999999999999988776

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-50  Score=342.98  Aligned_cols=199  Identities=25%  Similarity=0.298  Sum_probs=173.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........+..++
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   83 (237)
T PRK11614          4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA   83 (237)
T ss_pred             cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence            57999999999998899999999999999999999999999999999999999999999999998865433222456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      |++|++.+++..|+.||+.+......   ....+.++++.+ ++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDE  163 (237)
T PRK11614         84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDE  163 (237)
T ss_pred             EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence            99999999988999999976432111   112344567777 57777888999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||++||+.+++.+.+++++++++|.|||++||+++++.+++|.
T Consensus       164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~  206 (237)
T PRK11614        164 PSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADR  206 (237)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCE
Confidence            9999999999999999999877799999999999999988763

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=2.3e-50  Score=341.31  Aligned_cols=194  Identities=28%  Similarity=0.398  Sum_probs=170.9

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....  .....++|
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~--~~~~~i~~   78 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR--AALARLGV   78 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh--hhhhhEEE
Confidence            5889999999998999999999999999999999999999999999999999999999999998764321  22347899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+|+.||+.+......     ....+.++++.+|+.+..++++.+||||||||++|||||+.+|+++||||
T Consensus        79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE  158 (236)
T TIGR03864        79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDE  158 (236)
T ss_pred             eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            9999888888999999987543321     12235678899999988899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.+++.++++ +|.|||++||+++++.. +|
T Consensus       159 P~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d  200 (236)
T TIGR03864       159 PTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DD  200 (236)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CC
Confidence            9999999999999999999864 58999999999999875 54

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.1e-50  Score=355.38  Aligned_cols=187  Identities=25%  Similarity=0.370  Sum_probs=167.8

Q ss_pred             EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067           18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK   97 (229)
Q Consensus        18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (229)
                      ++|+++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....  ...+..++|++|++.++
T Consensus         1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~   78 (302)
T TIGR01188         1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP--RKVRRSIGIVPQYASVD   78 (302)
T ss_pred             CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH--HHHHhhcEEecCCCCCC
Confidence            4688889999999999999999999999999999999999999999999999999886432  23456799999999999


Q ss_pred             CCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           98 EKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      +.+|+.||+.+.....+.     ..++.++++.+++.+..++++.+|||||||||+||+||+.+|++|||||||+|||+.
T Consensus        79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~  158 (302)
T TIGR01188        79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR  158 (302)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence            999999999876543321     124567899999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++.+.+++++++++|.|||++||+++++++.+|
T Consensus       159 ~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d  192 (302)
T TIGR01188       159 TRRAIWDYIRALKEEGVTILLTTHYMEEADKLCD  192 (302)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            9999999999998779999999999999998764

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=2.8e-50  Score=338.32  Aligned_cols=197  Identities=26%  Similarity=0.367  Sum_probs=169.3

Q ss_pred             cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhh
Q 027067           10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~   83 (229)
                      +|+++||+++|+++    ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....  ...+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~   80 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR   80 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence            47899999999765    79999999999999999999999999999999999999999999999998865331  1234


Q ss_pred             hhcceEeeccc--ccCCCCCHHHhHHHHHHhcC--c-cc---c-HHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG--K-QG---N-SLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~--~-~~---~-~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++  .+++.+|+++|+.+......  . ..   . ..++++.+++. ...++++.+|||||||||+|||||
T Consensus        81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  160 (228)
T cd03257          81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL  160 (228)
T ss_pred             hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence            56799999998  46678899999976533221  1 11   1 13678889995 678999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d  214 (228)
T cd03257         161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIAD  214 (228)
T ss_pred             hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence            9999999999999999999999999999998765 8999999999999988776

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=2.5e-50  Score=339.61  Aligned_cols=196  Identities=22%  Similarity=0.317  Sum_probs=171.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.........+..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~   80 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV   80 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence            57899999999889999999999999999999999999999999999999999999999999886543222234579999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhC-CChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMG-LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~-l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      +|++.+++.+|+.||+.+.......  .....++++.++ +.+..++++.+||||||||++|||||+.+|+++||||||+
T Consensus        81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~  160 (230)
T TIGR03410        81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTE  160 (230)
T ss_pred             ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence            9999999989999999875433221  122456777776 5777899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+.+++.+.+++.+++++ +.|||++||+++++..++|
T Consensus       161 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d  200 (230)
T TIGR03410       161 GIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELAD  200 (230)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCC
Confidence            99999999999999998764 8999999999999988775

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-50  Score=347.94  Aligned_cols=196  Identities=27%  Similarity=0.334  Sum_probs=171.7

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~   82 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENE-KWVRSKVG   82 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCH-HHHHhhEE
Confidence            799999999996 5789999999999999999999999999999999999999999999999999865432 23456799


Q ss_pred             Eeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++. .+...|+.||+.+......     ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llll  162 (274)
T PRK13647         83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVL  162 (274)
T ss_pred             EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999863 3456799999987543211     123456789999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.++..+.+++.+++++|.|||++||+++++.+++|
T Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d  206 (274)
T PRK13647        163 DEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWAD  206 (274)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999987778999999999999988764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=3.5e-50  Score=341.42  Aligned_cols=195  Identities=27%  Similarity=0.384  Sum_probs=172.0

Q ss_pred             EEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ++++||+++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...+..++|
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~   79 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP-VELRRKIGY   79 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh-HHhhcceEE
Confidence            478999999988 789999999999999999999999999999999999999999999999998764332 234557899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh--hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR--LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ++|++.+++..|+.||+.++......     ...+.++++.+++..  ..++++.+|||||||||+|||||+.+|++|||
T Consensus        80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll  159 (242)
T cd03295          80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM  159 (242)
T ss_pred             EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence            99999999889999999875433221     124567899999985  78999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++.+++++ |.|||++||+++++..++|
T Consensus       160 DEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d  204 (242)
T cd03295         160 DEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD  204 (242)
T ss_pred             cCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999998764 8999999999999888775

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.8e-52  Score=335.79  Aligned_cols=199  Identities=27%  Similarity=0.406  Sum_probs=183.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +.|.++|+.|+|++++++++|||+|++||++|++|||||||||.+.++.|+.+|++|+|.++|.+++..+...+.+.+++
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig   82 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG   82 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-c----c--ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-K----Q--GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-~----~--~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      |+||++++|..+||+||+........ .    +  .+..++|+.|++.+.++++..+||||||+|+.|||||+.+|+.+|
T Consensus        83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiL  162 (243)
T COG1137          83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFIL  162 (243)
T ss_pred             cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999986544322 1    1  124578999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||+|.||.+...+.+++..++.+|..|+++-|+..+.-..+|-
T Consensus       163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR  208 (243)
T COG1137         163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR  208 (243)
T ss_pred             ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe
Confidence            9999999999999999999999999999999999998888777753

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.5e-51  Score=339.92  Aligned_cols=208  Identities=28%  Similarity=0.402  Sum_probs=186.8

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+++++++|+++||+-.+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|++++..+..+..+..+
T Consensus         2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi   81 (250)
T COG0411           2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI   81 (250)
T ss_pred             CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence            35799999999999999999999999999999999999999999999999999999999999999999988777778889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhc-----------------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLE-----------------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~-----------------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      .-.+|...+|+++||.||+......+                 ...+++.++|+++||.+.++++..+||+|||+|+.||
T Consensus        82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIA  161 (250)
T COG0411          82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIA  161 (250)
T ss_pred             eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHH
Confidence            99999999999999999997653211                 0113456789999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCCCCCCCC
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRLPPRFPR  215 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~~~~~~~  215 (229)
                      |||+.+|++|+||||.+||.+...+.+.+++++++++ |.||++|.||++.+...+|.=..-.+++
T Consensus       162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~  227 (250)
T COG0411         162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGE  227 (250)
T ss_pred             HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCc
Confidence            9999999999999999999999999999999999874 6999999999999999987544444444

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=2.9e-50  Score=333.54  Aligned_cols=193  Identities=30%  Similarity=0.375  Sum_probs=167.8

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcceE
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQLNW   89 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~~~   89 (229)
                      ++||++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....   .....++.++|
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~   80 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY   80 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence            479999999889999999999999999999999999999999999999999999999999864321   11224567999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++..|+.||+.+......     ...++.++++.+++.+..++++.+||+|||||++|||||+.+|++|||||
T Consensus        81 ~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDE  160 (206)
T TIGR03608        81 LFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADE  160 (206)
T ss_pred             EecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            9999999998999999987543221     12345678999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.++++++.++|.|+|++||+++.+. .+|
T Consensus       161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d  201 (206)
T TIGR03608       161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK-QAD  201 (206)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcC
Confidence            99999999999999999998777899999999998653 444

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=3.6e-50  Score=331.75  Aligned_cols=190  Identities=35%  Similarity=0.647  Sum_probs=168.7

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....  ..++..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~   78 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILYL   78 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch--HHhhhheEEe
Confidence            57899999999999999999999999999999999999999999999999999999999999876432  2345678999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      +|++.+++..|+.||+.+....... ...+.++++.+++.+..++++.+|||||||||+||||++.+|+++||||||++|
T Consensus        79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L  158 (198)
T TIGR01189        79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL  158 (198)
T ss_pred             ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            9988888889999999876543322 234677899999998899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |+.+++.+.+++.+++++|.|||++||+...+.
T Consensus       159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~  191 (198)
T TIGR01189       159 DKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV  191 (198)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEEccccccc
Confidence            999999999999998777899999999875443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.8e-50  Score=332.89  Aligned_cols=190  Identities=39%  Similarity=0.677  Sum_probs=170.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...    ..+.+++|
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----~~~~~~~~   77 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDP----DVAEACHY   77 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcch----hhHhhcEE
Confidence            68999999999988999999999999999999999999999999999999999999999999886421    14567899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      +++++.+++..|+.||+.+...... ....+.++++.+|+.+..++++.+||||||||++||||++.+|+++||||||++
T Consensus        78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            9988888888999999987543322 223467889999998888999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ||+.+++.+.+++.+++++|.|||++||+++++..
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG  192 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence            99999999999999987779999999999988876

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-50  Score=342.93  Aligned_cols=196  Identities=29%  Similarity=0.346  Sum_probs=172.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+..++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~-~~~~~~i~~   80 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP-AELARRRAV   80 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH-HHhhhheEE
Confidence            6899999999998899999999999999999999999999999999999999999999999998764332 223457899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh------cCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA------IDRP  158 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~------~~p~  158 (229)
                      ++|++.+++.+|+.||+.+......     ....+.++++.+++.+..++++.+|||||||||+|||||+      .+|+
T Consensus        81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~  160 (258)
T PRK13548         81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPR  160 (258)
T ss_pred             EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence            9999888888899999987532111     1123567889999998899999999999999999999999      5999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.+++.+.+++.+++ ++|.|||++||+++++...+|
T Consensus       161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d  209 (258)
T PRK13548        161 WLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD  209 (258)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence            999999999999999999999999987 678999999999999988765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.7e-50  Score=340.47  Aligned_cols=197  Identities=25%  Similarity=0.345  Sum_probs=172.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-----chhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-----GIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-----~~~~~~~   84 (229)
                      +|+++|+++.|+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...     ......+
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   81 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR   81 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence            58999999999988999999999999999999999999999999999999999999999999987311     0112345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHH-HhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFE-VLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      .+++|++|++.+++.+|+.||+.+.. ....     ....+.++++.+|+.+..++.+.+||||||||++|||||+.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~  161 (242)
T PRK11124         82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            67999999999999999999997432 1111     12235678899999988999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||||||++||+.+++.+.+++.+++++|+|+|++||+++++.+.+|
T Consensus       162 llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d  209 (242)
T PRK11124        162 VLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS  209 (242)
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence            999999999999999999999999987778999999999999988765

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.8e-50  Score=343.15  Aligned_cols=196  Identities=29%  Similarity=0.369  Sum_probs=172.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++.+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..... ...+..++|
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~   80 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS-RQLARRLAL   80 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH-HHHhhheEE
Confidence            6899999999999999999999999999999999999999999999999999999999999998754322 233456899


Q ss_pred             eecccccCCCCCHHHhHHHHHH----hcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEV----LEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~----~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++.+++.+|+.||+.+...    ...     ....+.++++.+++.+..++++.+|||||+|||+||||++.+|++|
T Consensus        81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  160 (255)
T PRK11231         81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVV  160 (255)
T ss_pred             ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            9999888888899999976421    111     1223567888999988899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||+.+++.+.+++.+++++|.|||++||+++++.+++|
T Consensus       161 llDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d  206 (255)
T PRK11231        161 LLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCD  206 (255)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcC
Confidence            9999999999999999999999987778999999999999988775

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.4e-50  Score=347.21  Aligned_cols=197  Identities=26%  Similarity=0.405  Sum_probs=169.4

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~   83 (229)
                      .|+++||++.|++     +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..... ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI   81 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence            4899999999974     479999999999999999999999999999999999999999999999999865321 1234


Q ss_pred             hhcceEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           84 KLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      +..++|++|++. .+...||.||+.+.....+     ...++.++++.+|+.  +..++++.+||||||||++|||||+.
T Consensus        82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~  161 (287)
T PRK13637         82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM  161 (287)
T ss_pred             hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence            568999999863 2335699999987543222     113456789999997  67899999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.++..+.+++++++++ |.|||++|||++++..++|
T Consensus       162 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d  213 (287)
T PRK13637        162 EPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLAD  213 (287)
T ss_pred             CCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999998765 8999999999999988764

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-49  Score=346.94  Aligned_cols=196  Identities=26%  Similarity=0.386  Sum_probs=169.2

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   81 (229)
                      +++++||+++|++     +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...   ....
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK   81 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            5899999999974     4699999999999999999999999999999999999999999999999987532   1112


Q ss_pred             hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..+..++|++|++  .++ ..|+.||+.+......     ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral  160 (287)
T PRK13641         82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM  160 (287)
T ss_pred             HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence            3456799999986  344 5799999986543221     122456789999997 688999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||+|||+.+++.+.+++++++++|.|||++||+++++...+|
T Consensus       161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d  213 (287)
T PRK13641        161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYAD  213 (287)
T ss_pred             HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999999987779999999999999988765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.4e-49  Score=338.68  Aligned_cols=196  Identities=27%  Similarity=0.364  Sum_probs=171.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCc-hhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSG-IFHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~-~~~~~   83 (229)
                      +++++||+++|+++.+++|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|+++|+++.... .....
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~   80 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL   80 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence            589999999999889999999999999999999999999999999999999998     999999999886421 11234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++ .|+.||+.+.....+  .    ...+.++++.+++.    +..++++.+|||||||||+|||||
T Consensus        81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  159 (247)
T TIGR00972        81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL  159 (247)
T ss_pred             HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            567999999988888 899999987543221  1    12356788999997    778999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      +.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++..++|.
T Consensus       160 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~  212 (247)
T TIGR00972       160 AVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDR  212 (247)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCE
Confidence            999999999999999999999999999999876 48999999999999887753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-49  Score=351.03  Aligned_cols=200  Identities=23%  Similarity=0.303  Sum_probs=171.2

Q ss_pred             CCCCcEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---
Q 027067            6 PPLPRLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---   77 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---   77 (229)
                      +..++|+++||+++|++     .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...   
T Consensus        17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~   96 (320)
T PRK13631         17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN   96 (320)
T ss_pred             CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence            34578999999999964     3699999999999999999999999999999999999999999999999987532   


Q ss_pred             ------------chhhhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCC
Q 027067           78 ------------GIFHQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKAR  137 (229)
Q Consensus        78 ------------~~~~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~  137 (229)
                                  ......+..++|++|++  .+++ .|+.||+.+......     ....+.++++.+++. ...++++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~  175 (320)
T PRK13631         97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF  175 (320)
T ss_pred             ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence                        11234567899999986  4555 499999987543211     112456788999996 68899999


Q ss_pred             CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       138 ~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++||+++++...+|
T Consensus       176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad  244 (320)
T PRK13631        176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD  244 (320)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999987779999999999998877654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=1.5e-49  Score=340.49  Aligned_cols=198  Identities=27%  Similarity=0.382  Sum_probs=173.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc----------
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----------   78 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~----------   78 (229)
                      .+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++....          
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   83 (257)
T PRK10619          4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD   83 (257)
T ss_pred             ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence            4699999999999999999999999999999999999999999999999999999999999999875310          


Q ss_pred             --hhhhhhhcceEeecccccCCCCCHHHhHHHHHH-hcC-----ccccHHHHHHHhCCChhh-cCCCCCCChhHHHHHHH
Q 027067           79 --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV-LEG-----KQGNSLPALELMGLGRLA-KEKARMLSMGQRKRLQL  149 (229)
Q Consensus        79 --~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~-----~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~l  149 (229)
                        ....++..++|++|++.+++.+|++||+.+... ...     ...++.++++.+|+.+.. ++++.+||||||||++|
T Consensus        84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~l  163 (257)
T PRK10619         84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  163 (257)
T ss_pred             chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence              112345679999999999998999999976431 111     123456789999998764 88999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+.+|++|||||||++||+.+++.+.+++++++++|+|||++||+++++..++|
T Consensus       164 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d  220 (257)
T PRK10619        164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS  220 (257)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence            999999999999999999999999999999999997779999999999999988765

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=6.2e-50  Score=333.04  Aligned_cols=192  Identities=29%  Similarity=0.393  Sum_probs=168.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++..  |+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|+++.....   .+..++|+
T Consensus         1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~   75 (211)
T cd03298           1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSML   75 (211)
T ss_pred             CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH---hHccEEEE
Confidence            478999999987653  9999999999999999999999999999999999999999999998865332   24579999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+..... .    ...++.++++.+++.+..++++.+||||||||++|||||+.+|++||||||
T Consensus        76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP  155 (211)
T cd03298          76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP  155 (211)
T ss_pred             ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99999999999999997643211 1    123456789999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.++++ .+.|||++||+++++.+++|.
T Consensus       156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~  198 (211)
T cd03298         156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR  198 (211)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence            999999999999999999865 489999999999999887763

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=1.2e-49  Score=337.60  Aligned_cols=196  Identities=21%  Similarity=0.298  Sum_probs=168.1

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      |+++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|++  +|++|+|+++|+++.........+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF   80 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence            57899999999889999999999999999999999999999999999995  7999999999998865432222234588


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC--------c----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHHHHh
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG--------K----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLARLLA  154 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~--------~----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAral~  154 (229)
                      |++|++.+++..|+.||+.+......        .    ...+.++++.+++. ...++++. +|||||||||+|||||+
T Consensus        81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~  160 (243)
T TIGR01978        81 LAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMAL  160 (243)
T ss_pred             eeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHh
Confidence            99999999999999999876432110        0    12345678889997 56788887 59999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-hc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-MN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~~  206 (229)
                      .+|++|||||||++||+.+++.+.+++++++++|.|||++||+++.+..+ +|
T Consensus       161 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d  213 (243)
T TIGR01978       161 LEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPD  213 (243)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCC
Confidence            99999999999999999999999999999987789999999999999886 44

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-49  Score=338.50  Aligned_cols=195  Identities=28%  Similarity=0.432  Sum_probs=171.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++|++++|+++.+|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++|
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~~i~~   81 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV-IDLRRKIGM   81 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh-HHhhhcEEE
Confidence            5899999999998899999999999999999999999999999999999999999999999998764332 234567999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      ++|++.+++ .|+.||+.+...... ...++.++++.+++. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus        82 ~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  160 (241)
T PRK14250         82 VFQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS  160 (241)
T ss_pred             EecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            999988876 599999876433221 123456789999996 67899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+.+++.+.+.+++++++ |.|||++||+++++.+++|
T Consensus       161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d  200 (241)
T PRK14250        161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGD  200 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCC
Confidence            99999999999999998764 8999999999999888765

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=4.8e-50  Score=358.50  Aligned_cols=189  Identities=25%  Similarity=0.309  Sum_probs=168.1

Q ss_pred             EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---hhhcceEeeccc
Q 027067           18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---YKLQLNWLSLKD   94 (229)
Q Consensus        18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---~~~~~~~~~~~~   94 (229)
                      |+|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+....   .++.++|++|++
T Consensus         1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            46888999999999999999999999999999999999999999999999999999876543211   156899999999


Q ss_pred             ccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           95 AVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        95 ~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      .+++++||.||+.+.....+.     ..++.++++.+||..+.++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus        81 ~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saL  160 (363)
T TIGR01186        81 ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSAL  160 (363)
T ss_pred             cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            999999999999886544321     234678899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          170 DYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+++.+.+.+.+++++ |+|||++|||++++...+|
T Consensus       161 D~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d  198 (363)
T TIGR01186       161 DPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD  198 (363)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999998654 8999999999999888764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.3e-49  Score=334.00  Aligned_cols=191  Identities=28%  Similarity=0.447  Sum_probs=171.7

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++....     ...++|+
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~-----~~~~~~~   75 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD-----LHKIGSL   75 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc-----cccEEEE
Confidence            57899999999889999999999999999999999999999999999999999999999998875321     2468999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      +|++.+++..|+.||+.++..... ....+.++++.+++.+..++++.+|||||+||++||||++.+|++|||||||++|
T Consensus        76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L  155 (223)
T TIGR03740        76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL  155 (223)
T ss_pred             cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence            999988888999999987543322 2345678899999998899999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus       156 D~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d  192 (223)
T TIGR03740       156 DPIGIQELRELIRSFPEQGITVILSSHILSEVQQLAD  192 (223)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence            9999999999999987778999999999999988765

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.4e-49  Score=359.38  Aligned_cols=198  Identities=27%  Similarity=0.341  Sum_probs=173.5

Q ss_pred             CcEEEEeEEEEeCCee------------------------eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc
Q 027067            9 PRLLLKNVSCMRNAQQ------------------------ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA   64 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~------------------------iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~   64 (229)
                      .+|+++||++.||.++                        +|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s   82 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR   82 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence            3789999999888765                        8999999999999999999999999999999999999999


Q ss_pred             cEEEEcCEeCCCCchhh---hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCC
Q 027067           65 GEILWNGHDITQSGIFH---QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKA  136 (229)
Q Consensus        65 G~I~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~  136 (229)
                      |+|+++|+++.......   ..+.+++|++|++.+++.+|+.||+.+.....+.     ..++.++++.+++.+..++++
T Consensus        83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~  162 (400)
T PRK10070         83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP  162 (400)
T ss_pred             CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc
Confidence            99999999986543211   1234799999999999999999999876543221     234567899999999999999


Q ss_pred             CCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          137 RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       137 ~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.++++ .|+|||++|||++++..++|
T Consensus       163 ~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~D  233 (400)
T PRK10070        163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGD  233 (400)
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCC
Confidence            99999999999999999999999999999999999999999999999865 58999999999999988764

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.6e-50  Score=343.87  Aligned_cols=197  Identities=29%  Similarity=0.355  Sum_probs=173.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus        10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~   88 (265)
T PRK10575         10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS-KAFARKVA   88 (265)
T ss_pred             ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH-HHHhhheE
Confidence            57999999999998899999999999999999999999999999999999999999999999998754332 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHH-hc------C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEV-LE------G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~-~~------~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      |++|++.+++.+|+.||+.+... ..      .  ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  168 (265)
T PRK10575         89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC  168 (265)
T ss_pred             EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            99999888888999999976421 00      0  112356788999998888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||+.+++.+.+++.+++++ |.|||++||+++++.+.+|
T Consensus       169 llLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d  216 (265)
T PRK10575        169 LLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD  216 (265)
T ss_pred             EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999998664 8999999999999988765

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=2e-49  Score=351.30  Aligned_cols=199  Identities=20%  Similarity=0.272  Sum_probs=172.4

Q ss_pred             CCcEEEEeEEEEeCC-------------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067            8 LPRLLLKNVSCMRNA-------------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~-------------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .++|+++||+++|+.             .++++||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i   85 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL   85 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence            468999999999952             5799999999999999999999999999999999999999999999999998


Q ss_pred             CCCchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhc--C-c----cccHHHHHHHhCCC-hhhcCCCCCCChh
Q 027067           75 TQSGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE--G-K----QGNSLPALELMGLG-RLAKEKARMLSMG  142 (229)
Q Consensus        75 ~~~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~--~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgG  142 (229)
                      ......  ...+..++|++|++  .+++.+|+.+|+.+.....  . .    ...+.++++.+++. +..++++++||||
T Consensus        86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG  165 (331)
T PRK15079         86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG  165 (331)
T ss_pred             CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence            754321  22456799999997  5888899999997643221  1 1    22356789999994 5789999999999


Q ss_pred             HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          143 QRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       143 qkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |+|||+|||||+.+|++||+||||++||+.++..+.+++++++++ |.|+|+||||++.+..++|
T Consensus       166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d  230 (331)
T PRK15079        166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD  230 (331)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999999999998764 8999999999999988764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-49  Score=343.58  Aligned_cols=197  Identities=24%  Similarity=0.309  Sum_probs=169.4

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~   88 (229)
                      ||+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ....+..++
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~   80 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA   80 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence            5899999999998889999999999999999999999999999999999999999999999998742111 123456799


Q ss_pred             Eeeccccc-CCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDAV-KEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~~-~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++.. +...++.+|+.+.....+ .    ...+.++++.+++.++.++++.+||||||||++|||||+.+|++|||
T Consensus        81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL  160 (271)
T PRK13638         81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL  160 (271)
T ss_pred             EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            99998653 344579999876533221 1    12345688999998889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus       161 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d  204 (271)
T PRK13638        161 DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD  204 (271)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999987778999999999999988765

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=2.1e-49  Score=333.44  Aligned_cols=196  Identities=28%  Similarity=0.395  Sum_probs=170.9

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++||++.|+++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++..+
T Consensus         5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i   83 (225)
T PRK10247          5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP-EIYRQQV   83 (225)
T ss_pred             CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH-HHHHhcc
Confidence            357999999999998899999999999999999999999999999999999999999999999998765433 2345679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      +|++|++.+++. |+.||+.+......   ....+.++++.+++. ...++++.+||+||+|||+|||||+.+|+++|||
T Consensus        84 ~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD  162 (225)
T PRK10247         84 SYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD  162 (225)
T ss_pred             EEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            999999888764 99999986433221   122356789999996 5789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.+++.++.+ .|.|||++||+++++. .+|
T Consensus       163 EPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d  205 (225)
T PRK10247        163 EITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HAD  205 (225)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCC
Confidence            99999999999999999999865 4899999999999986 455

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-49  Score=343.44  Aligned_cols=196  Identities=24%  Similarity=0.282  Sum_probs=169.7

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.........+..++
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG   80 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence            589999999995 5779999999999999999999999999999999999999999999999998864322223456799


Q ss_pred             Eeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++. .+...|+.||+.+......     ....+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus        81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL  160 (274)
T PRK13644         81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF  160 (274)
T ss_pred             EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999875 3556799999987543221     123456788999999899999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.++..+.+++++++++|.|||++||+++++.. +|
T Consensus       161 DEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~-~d  203 (274)
T PRK13644        161 DEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-AD  203 (274)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhh-CC
Confidence            99999999999999999999988779999999999999853 54

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-49  Score=345.85  Aligned_cols=196  Identities=23%  Similarity=0.347  Sum_probs=168.7

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   81 (229)
                      ||+++||+++|+.     +.+|+||||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|.++...   ....
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   80 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK   80 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence            5899999999963     2599999999999999999999999999999999999999999999999998531   1123


Q ss_pred             hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..+..++|++|++  .++. .|+.||+.+.....+     ...++.++++.+++. ++.++++.+|||||||||+|||||
T Consensus        81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL  159 (288)
T PRK13643         81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL  159 (288)
T ss_pred             HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence            3566899999986  4554 599999987643221     123456788999996 578999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.++..+.+++.+++++|.|||++|||++++...+|
T Consensus       160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d  212 (288)
T PRK13643        160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD  212 (288)
T ss_pred             HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            99999999999999999999999999999987779999999999999887654

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2e-50  Score=335.55  Aligned_cols=203  Identities=26%  Similarity=0.407  Sum_probs=185.9

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +++++++|+|+||++.+++|+||++++|+++|++|+|||||||.+|+|.|+++|++|+|.|+|.+++..     ...+||
T Consensus         1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~-----~~~rIG   75 (300)
T COG4152           1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE-----IKNRIG   75 (300)
T ss_pred             CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh-----hhhhcc
Confidence            368999999999999999999999999999999999999999999999999999999999999998652     345799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |+|.+..+++.+||.|.+.|++.+.+..     .+...||+++++.....+++.+||.|++|++.+..+++++|+++|||
T Consensus        76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD  155 (300)
T COG4152          76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD  155 (300)
T ss_pred             cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence            9999999999999999999998876543     34567999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCCCCCCc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRR  216 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~~~~~~  216 (229)
                      ||||||||.+.+.+.+.+.+++++|.|||++||.++.+++.||.=+.-.-+++
T Consensus       156 EPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~  208 (300)
T COG4152         156 EPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT  208 (300)
T ss_pred             CCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence            99999999999999999999999999999999999999999985444334433

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-49  Score=343.36  Aligned_cols=196  Identities=26%  Similarity=0.335  Sum_probs=170.8

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ++|+++||+++|++   +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~-~~~~~   81 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV-WDIRH   81 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-HHHHh
Confidence            37999999999963   469999999999999999999999999999999999999999999999999865332 23456


Q ss_pred             cceEeeccc-ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           86 QLNWLSLKD-AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        86 ~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      .++|++|++ ..++..||.||+.+.....+     ....+.++++.+++.+..++.+.+|||||||||+|||||+.+|++
T Consensus        82 ~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l  161 (279)
T PRK13650         82 KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI  161 (279)
T ss_pred             hceEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            799999987 36677899999987543221     123456789999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||+.+++.+.+++.+++++ |+|||++||+++++. .+|
T Consensus       162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~d  208 (279)
T PRK13650        162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSD  208 (279)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence            9999999999999999999999998765 899999999999885 454

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=1.9e-49  Score=340.72  Aligned_cols=198  Identities=25%  Similarity=0.364  Sum_probs=172.5

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCc----hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSG----IFH   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~----~~~   81 (229)
                      ++|+++||+++|+++++|+++||+|.+||+++|+||||||||||+++|+|+++|+   +|+|+++|+++....    ...
T Consensus         3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~   82 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR   82 (262)
T ss_pred             cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence            4899999999999999999999999999999999999999999999999999986   499999999875421    112


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHh------------c-CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL------------E-GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~------------~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~  148 (229)
                      ..+..++|++|++.+++.+|+.||+.+....            . .....+.++++.+++.+..++.+.+||+||||||+
T Consensus        83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~  162 (262)
T PRK09984         83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA  162 (262)
T ss_pred             HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence            3356789999999999989999999764210            0 01234567899999988889999999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|++|||||||++||+.+++.+.++++++++ .|.|||++||+++++..++|
T Consensus       163 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d  221 (262)
T PRK09984        163 IARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE  221 (262)
T ss_pred             HHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999999999999875 48999999999999888775

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.1e-49  Score=343.85  Aligned_cols=195  Identities=26%  Similarity=0.325  Sum_probs=170.2

Q ss_pred             EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh---hhhhcce
Q 027067           12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH---QYKLQLN   88 (229)
Q Consensus        12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~---~~~~~~~   88 (229)
                      .++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.......   ..+.+++
T Consensus        26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~  105 (269)
T cd03294          26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS  105 (269)
T ss_pred             hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence            5678999999999999999999999999999999999999999999999999999999999876432111   1134699


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+|+.||+.+......     ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus       106 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD  185 (269)
T cd03294         106 MVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD  185 (269)
T ss_pred             EEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            99999999989999999987543221     1234567899999998899999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus       186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d  229 (269)
T cd03294         186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD  229 (269)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence            999999999999999999998654 8999999999999888765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-49  Score=337.79  Aligned_cols=196  Identities=27%  Similarity=0.326  Sum_probs=171.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc------------
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------------   78 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~------------   78 (229)
                      ++++||+++|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....            
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~   80 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK   80 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence            57999999999889999999999999999999999999999999999999999999999999875321            


Q ss_pred             hhhhhhhcceEeecccccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067           79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .....+..++|++|++.+++..|+.||+.+.... ..     ....+.++++.+++.+..++.+.+|||||+||++||||
T Consensus        81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lara  160 (252)
T TIGR03005        81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARA  160 (252)
T ss_pred             HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHH
Confidence            0123456799999999999999999999864321 11     11235678999999988999999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.++++++.++ |.|+|++||+++++..++|
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d  215 (252)
T TIGR03005       161 LAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFAD  215 (252)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence            99999999999999999999999999999998764 8999999999999988765

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.7e-49  Score=343.95  Aligned_cols=196  Identities=24%  Similarity=0.339  Sum_probs=168.4

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC---chhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS---GIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~   81 (229)
                      .++++||+++|++     +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...   ....
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK   81 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            3899999999974     5699999999999999999999999999999999999999999999999988531   1122


Q ss_pred             hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..+..++|++|++  .++ ..||.||+.+......     ....+.++++.++|. ...++++.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL  160 (290)
T PRK13634         82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL  160 (290)
T ss_pred             HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3456799999986  454 4699999987643221     113456789999996 678999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.++..+.+++++++++ |.|||++|||++++..++|
T Consensus       161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~d  214 (290)
T PRK13634        161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD  214 (290)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999999998664 8999999999999988764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=4e-49  Score=339.40  Aligned_cols=197  Identities=25%  Similarity=0.356  Sum_probs=169.6

Q ss_pred             cEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh
Q 027067           10 RLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF   80 (229)
Q Consensus        10 ~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~   80 (229)
                      +|+++||++.|+         ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~   81 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK   81 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence            689999999995         36799999999999999999999999999999999999999999999999988654321


Q ss_pred             h--hhhhcceEeeccc--ccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067           81 H--QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        81 ~--~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l  149 (229)
                      .  .++..++|++|++  .+++.+|+.||+.+.... ..     ...++.++++.+++. ...++++.+|||||||||+|
T Consensus        82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l  161 (265)
T TIGR02769        82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI  161 (265)
T ss_pred             HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence            1  2355799999986  466778999998754321 11     123456789999996 67899999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++.+..++|
T Consensus       162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d  219 (265)
T TIGR02769       162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ  219 (265)
T ss_pred             HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc
Confidence            99999999999999999999999999999999998764 8999999999999988765

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.5e-49  Score=335.97  Aligned_cols=197  Identities=27%  Similarity=0.355  Sum_probs=168.2

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~   81 (229)
                      +|+|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+.+     |++|+|+++|+++..... ..
T Consensus         4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   83 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV   83 (253)
T ss_pred             CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence            468999999999998889999999999999999999999999999999999974     589999999998753211 12


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      ..+..++|++|++.+++ .|+.||+.+.......      ..++.++++.+++.+    ..++++.+|||||||||+|||
T Consensus        84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  162 (253)
T PRK14242         84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR  162 (253)
T ss_pred             HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence            34567999999988887 4999999875432211      123556788888843    468889999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+.+|
T Consensus       163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~~~~~~~d  216 (253)
T PRK14242        163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQQAARVSD  216 (253)
T ss_pred             HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHHHHHHhCC
Confidence            99999999999999999999999999999999854 7899999999999988775

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-49  Score=346.78  Aligned_cols=197  Identities=25%  Similarity=0.370  Sum_probs=168.2

Q ss_pred             cEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-------
Q 027067           10 RLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-------   77 (229)
Q Consensus        10 ~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-------   77 (229)
                      +|+++||+++|++.     .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++....       
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~   81 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE   81 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence            48999999999753     599999999999999999999999999999999999999999999998765211       


Q ss_pred             ----------------chhhhhhhcceEeeccc-ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcC
Q 027067           78 ----------------GIFHQYKLQLNWLSLKD-AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKE  134 (229)
Q Consensus        78 ----------------~~~~~~~~~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~  134 (229)
                                      ......+..++|++|++ ..+...||+||+.+......     ...++.++++.+||. ++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  161 (305)
T PRK13651         82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR  161 (305)
T ss_pred             ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence                            01123466899999985 23335699999987643221     123467889999996 78999


Q ss_pred             CCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++|||++++.+.+|
T Consensus       162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad  233 (305)
T PRK13651        162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK  233 (305)
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999988779999999999999888764

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-49  Score=335.69  Aligned_cols=195  Identities=27%  Similarity=0.363  Sum_probs=169.9

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..... ...+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-~~~~   81 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-IELR   81 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH-HHHh
Confidence            69999999999988999999999999999999999999999999999999974     79999999998865332 2345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..++|++|++.+++..|+.||+.+......   .    ...+.++++.+++.    +..++++.+|||||||||+|||||
T Consensus        82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral  161 (250)
T PRK14247         82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARAL  161 (250)
T ss_pred             ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            679999999988888999999987543211   1    12345788889985    356899999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ +.|+|++||+++++.+.+|
T Consensus       162 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d  213 (250)
T PRK14247        162 AFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQQAARISD  213 (250)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcC
Confidence            999999999999999999999999999999854 7999999999999888765

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-49  Score=341.03  Aligned_cols=198  Identities=25%  Similarity=0.309  Sum_probs=173.7

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..+|+++||+++|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...+..+
T Consensus         5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i   83 (265)
T PRK10253          5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS-KEVARRI   83 (265)
T ss_pred             ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH-HHHhhhe
Confidence            357999999999999899999999999999999999999999999999999999999999999998765332 2234579


Q ss_pred             eEeecccccCCCCCHHHhHHHHHH-h----c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEV-L----E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~-~----~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +|++|++.+++..|+.||+.+... .    .  .  ....+.++++.+++.+..++++.+||||||||++||||++.+|+
T Consensus        84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~  163 (265)
T PRK10253         84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA  163 (265)
T ss_pred             EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence            999999998888999999976321 0    0  0  11235678899999888999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||+|||+.+++.+.+++.++.++ |.|||++||+++++.+++|
T Consensus       164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d  212 (265)
T PRK10253        164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS  212 (265)
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999998764 8999999999999988876

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6e-49  Score=336.05  Aligned_cols=198  Identities=25%  Similarity=0.328  Sum_probs=168.9

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IF   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~   80 (229)
                      +.++++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|+++|+++.... ..
T Consensus         4 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~   83 (254)
T PRK14273          4 NEAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI   83 (254)
T ss_pred             CCceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence            34589999999999988899999999999999999999999999999999999997     4899999999875321 11


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCC----ChhhcCCCCCCChhHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGL----GRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l----~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      ...+..++|++|++.++. .|++||+.+.......      ...+.++++.+++    .+..++++.+|||||||||+||
T Consensus        84 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~la  162 (254)
T PRK14273         84 LELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIA  162 (254)
T ss_pred             HHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHH
Confidence            234567999999988874 8999999875432211      1234567788887    3457889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~~~~~~~d  217 (254)
T PRK14273        163 RTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQQAGRISD  217 (254)
T ss_pred             HHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999864 7899999999999988765

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=4.3e-49  Score=325.78  Aligned_cols=202  Identities=27%  Similarity=0.360  Sum_probs=180.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+..||..++|++|||++++||+++|+|+||||||||||+|+|+.+|.+|+|.|+|+|++..+.....+..++
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~   81 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA   81 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999888788889999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc---cc-cHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK---QG-NSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~---~~-~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |+||...+|+.+||+||+..+......   .. ..+++.+.| .|.+.++++..+|||||||.++|||||+.+|++|+||
T Consensus        82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD  161 (237)
T COG0410          82 YVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD  161 (237)
T ss_pred             eCcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec
Confidence            999999999999999999876443221   11 145566665 3567789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhccCCC
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNLRLP  210 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~~~~  210 (229)
                      |||.||-|.-.+.+.+.+++++++ |.||++|.++...+-++.|....
T Consensus       162 EPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yv  209 (237)
T COG0410         162 EPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYV  209 (237)
T ss_pred             CCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEE
Confidence            999999999999999999999866 77999999999988887765443

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.3e-49  Score=368.09  Aligned_cols=199  Identities=21%  Similarity=0.287  Sum_probs=176.2

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++.........+..+
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i   88 (510)
T PRK15439          9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI   88 (510)
T ss_pred             CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence            45899999999999989999999999999999999999999999999999999999999999999886543322223468


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      +|++|++.+++.+|+.||+.+...... ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt  168 (510)
T PRK15439         89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT  168 (510)
T ss_pred             EEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            999999999999999999987432111 1234667899999998889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||+.+++.+.+++++++++|+|||++|||++++.+.+|
T Consensus       169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d  208 (510)
T PRK15439        169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLAD  208 (510)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999998789999999999999988764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.8e-49  Score=369.12  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=174.9

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   82 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG   82 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            48999999999998899999999999999999999999999999999999999999999999998864332222345699


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhc---C------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLE---G------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~---~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      |++|++.+++.+|+.||+.++....   .      ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l  162 (501)
T PRK10762         83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV  162 (501)
T ss_pred             EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            9999999999999999998743211   0      012456789999999888999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||++||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus       163 llLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d  209 (501)
T PRK10762        163 IIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICD  209 (501)
T ss_pred             EEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999998778999999999999998775

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=5.4e-50  Score=320.23  Aligned_cols=193  Identities=28%  Similarity=0.380  Sum_probs=171.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      |+.+++|.++|+..+.  ..+++|+.||+++|+|||||||||||++|+|+..|.+|+|+++|++.+...+   +.+-+++
T Consensus         1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSm   75 (231)
T COG3840           1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSM   75 (231)
T ss_pred             CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhh
Confidence            4788999999987765  7889999999999999999999999999999999999999999999887654   3456789


Q ss_pred             eecccccCCCCCHHHhHHHHHHh----cC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVL----EG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~----~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|+.++|.++||.+|+.++...    .. ...++..++.++|+..+.++.|.+|||||||||+|||+|+++-+||+|||
T Consensus        76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE  155 (231)
T COG3840          76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE  155 (231)
T ss_pred             hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence            99999999999999999876321    11 22456778999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhcc
Q 027067          165 PSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||+|||.-+..+..++.+++ +++.|++||||.++++....+.
T Consensus       156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~  199 (231)
T COG3840         156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR  199 (231)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence            999999999999999999975 4588999999999999987653

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-49  Score=341.04  Aligned_cols=196  Identities=25%  Similarity=0.318  Sum_probs=171.4

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ++++++||+++|++  +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~-~~~~~~   82 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV-WDVRRQ   82 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH-HHHhhh
Confidence            47999999999974  579999999999999999999999999999999999999999999999999865432 234567


Q ss_pred             ceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++|++. ++...|+.||+.+...... .    ..++.++++.+||.+..++++.+|||||||||+|||||+.+|++|
T Consensus        83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  162 (279)
T PRK13635         83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDII  162 (279)
T ss_pred             eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999873 6667899999987543221 1    134567889999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||+.+++.+.+++.+++++ |.|||++||+++.+.. +|
T Consensus       163 lLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d  208 (279)
T PRK13635        163 ILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-AD  208 (279)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC
Confidence            999999999999999999999998765 8999999999999874 54

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.6e-49  Score=337.21  Aligned_cols=195  Identities=29%  Similarity=0.310  Sum_probs=171.9

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+..++|+
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~~   80 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR-RARARRVALV   80 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH-HHHhhheEEe
Confidence            689999999999999999999999999999999999999999999999999999999999998865432 2334568999


Q ss_pred             ecccccCCCCCHHHhHHHHHH-h---cC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           91 SLKDAVKEKFTVLDNVQWFEV-L---EG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~-~---~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      +|++.+++..|+.||+.++.. .   ..     ....+.++++.+++.+..++++.+||||||||++||||++.+|+++|
T Consensus        81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll  160 (256)
T TIGR03873        81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL  160 (256)
T ss_pred             cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            999877888899999976421 1   10     11235678899999888999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus       161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d  205 (256)
T TIGR03873       161 LDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD  205 (256)
T ss_pred             EcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999988778999999999999988765

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=3.9e-49  Score=329.08  Aligned_cols=193  Identities=26%  Similarity=0.310  Sum_probs=167.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcc
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQL   87 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~   87 (229)
                      +++ ||+|+|+++.+  |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++....   .....+..+
T Consensus         2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   77 (214)
T cd03297           2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI   77 (214)
T ss_pred             cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence            455 89999999876  99999999 999999999999999999999999999999999999875311   112235679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      +|++|++.+++.+|+.+|+.+......   ...++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus        78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE  157 (214)
T cd03297          78 GLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDE  157 (214)
T ss_pred             EEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            999999999989999999986542211   12345678999999888899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||++||+.+++.+.+++.+++++ |.|||++||+++++...+|.
T Consensus       158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~  201 (214)
T cd03297         158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADR  201 (214)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCE
Confidence            99999999999999999998765 89999999999999887763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.6e-49  Score=340.50  Aligned_cols=198  Identities=27%  Similarity=0.374  Sum_probs=170.9

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~   86 (229)
                      ++|+++||+++|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... .....+..
T Consensus         4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~   83 (283)
T PRK13636          4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES   83 (283)
T ss_pred             ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence            4899999999996 578999999999999999999999999999999999999999999999999984211 11234567


Q ss_pred             ceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++|++. .+...|+.||+.+.....+.     ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|
T Consensus        84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lL  163 (283)
T PRK13636         84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  163 (283)
T ss_pred             EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999863 23457999999875432211     134567889999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||+.+++.+.+++.+++++ |.|||++||+++++...+|
T Consensus       164 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d  210 (283)
T PRK13636        164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD  210 (283)
T ss_pred             EEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence            999999999999999999999998765 8999999999999988765

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.5e-49  Score=337.12  Aligned_cols=201  Identities=25%  Similarity=0.305  Sum_probs=171.1

Q ss_pred             CCCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc
Q 027067            4 RKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG   78 (229)
Q Consensus         4 ~~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~   78 (229)
                      .+.+..+++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|+++....
T Consensus         7 ~~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~   86 (260)
T PRK10744          7 VATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK   86 (260)
T ss_pred             hcCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence            3445678999999999998899999999999999999999999999999999999986     58999999999875321


Q ss_pred             -hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc-C-c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHH
Q 027067           79 -IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRL  147 (229)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv  147 (229)
                       .....+..++|++|++.+++ .|++||+.+..... . .    ..++.++++.+++.    +..++++.+||||||||+
T Consensus        87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv  165 (260)
T PRK10744         87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRL  165 (260)
T ss_pred             cchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHH
Confidence             11234567999999988877 79999998654321 1 1    12356788888874    457889999999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++..++|
T Consensus       166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d  223 (260)
T PRK10744        166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQQAARCSD  223 (260)
T ss_pred             HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999999864 7899999999999988765

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1e-48  Score=338.99  Aligned_cols=196  Identities=24%  Similarity=0.387  Sum_probs=170.2

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +++++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+++..... ...+..++
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~   81 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI-REVRKFVG   81 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHhheE
Confidence            699999999995 5679999999999999999999999999999999999999999999999998865332 23456789


Q ss_pred             Eeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           89 WLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        89 ~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      |++|++. .+...|+.||+.+.......     ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|||
T Consensus        82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llil  161 (277)
T PRK13652         82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVL  161 (277)
T ss_pred             EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            9999863 33457999999865432111     12356789999999889999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++++++++ |.|||++||+++++.+++|
T Consensus       162 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~d  206 (277)
T PRK13652        162 DEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMAD  206 (277)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999998765 8999999999999988764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-49  Score=351.55  Aligned_cols=193  Identities=20%  Similarity=0.304  Sum_probs=169.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~   86 (229)
                      ||++ ||+++|+++.+  |+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....   .....++.
T Consensus         1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   77 (352)
T PRK11144          1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR   77 (352)
T ss_pred             CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence            5788 99999987653  899999999999999999999999999999999999999999999875321   01223567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ++|++|++.+++.+|+.||+.+.... ....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        78 i~~v~q~~~l~~~~tv~enl~~~~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPt  156 (352)
T PRK11144         78 IGYVFQDARLFPHYKVRGNLRYGMAK-SMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPL  156 (352)
T ss_pred             EEEEcCCcccCCCCcHHHHHHhhhhh-hhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence            99999999999999999999875321 12345678899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||+.+++.+.+.++++.++ |.|+|+||||++++..++|
T Consensus       157 s~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d  197 (352)
T PRK11144        157 ASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD  197 (352)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence            999999999999999998765 8999999999999988765

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5e-49  Score=342.47  Aligned_cols=196  Identities=20%  Similarity=0.286  Sum_probs=168.6

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~   81 (229)
                      .++++||+++|++     +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....   ...
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR   81 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence            4899999999964     36999999999999999999999999999999999999999999999999985421   112


Q ss_pred             hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..+..++|++|++  .+++ .|+.||+.+......     ....+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus        82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL  160 (286)
T PRK13646         82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL  160 (286)
T ss_pred             HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3566899999986  3554 499999987543221     123456789999997 678999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.++..+.++++++++ .|.|||++||+++++.+++|
T Consensus       161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d  214 (286)
T PRK13646        161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD  214 (286)
T ss_pred             HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence            999999999999999999999999999999865 48999999999999888764

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-49  Score=339.97  Aligned_cols=196  Identities=29%  Similarity=0.400  Sum_probs=167.5

Q ss_pred             cEEEEeEEEEeCC-----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhh
Q 027067           10 RLLLKNVSCMRNA-----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~-----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~   81 (229)
                      .|+++||+++|++     +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++....   ...
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~   81 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK   81 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence            4899999999974     46999999999999999999999999999999999999999999999999876421   112


Q ss_pred             hhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      .++..++|++|++  .+++ .|+.||+.+...... .    ...+.++++.+++. ...++++.+|||||||||+|||||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al  160 (280)
T PRK13649         82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL  160 (280)
T ss_pred             HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3456799999986  3454 699999987543221 1    12345678899997 467999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.+++++|+|||++||+++++...+|
T Consensus       161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d  213 (280)
T PRK13649        161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD  213 (280)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence            99999999999999999999999999999987778999999999999988764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-49  Score=368.31  Aligned_cols=198  Identities=25%  Similarity=0.366  Sum_probs=174.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus         4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~   83 (510)
T PRK09700          4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG   83 (510)
T ss_pred             ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence            58999999999998899999999999999999999999999999999999999999999999999865432222335699


Q ss_pred             EeecccccCCCCCHHHhHHHHHH----hcC--------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEV----LEG--------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~----~~~--------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      |++|++.+++.+||.||+.+...    ..+        ...++.++++.+|+.+..++++.+|||||||||+|||||+.+
T Consensus        84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~  163 (510)
T PRK09700         84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD  163 (510)
T ss_pred             EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999976321    011        112356789999998888999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus       164 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d  213 (510)
T PRK09700        164 AKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICD  213 (510)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999998789999999999999988764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.4e-49  Score=327.32  Aligned_cols=192  Identities=26%  Similarity=0.339  Sum_probs=168.1

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++||+++|++  .++++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++....   ..+..++|+
T Consensus         1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---~~~~~i~~v   75 (213)
T TIGR01277         1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---PYQRPVSML   75 (213)
T ss_pred             CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC---hhccceEEE
Confidence            478999999974  578999999999999999999999999999999999999999999999875422   234679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+..... .    ...++.++++.+++.+..++.+.+||+|||||++||||++.+|+++|||||
T Consensus        76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  155 (213)
T TIGR01277        76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP  155 (213)
T ss_pred             eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            99999999899999997643211 1    122456789999998889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.++.++ +.|||++||+++++.+++|.
T Consensus       156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~  198 (213)
T TIGR01277       156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ  198 (213)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence            9999999999999999998654 89999999999999887763

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-48  Score=345.19  Aligned_cols=198  Identities=21%  Similarity=0.330  Sum_probs=171.6

Q ss_pred             CcEEEEeEEEEeC----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc
Q 027067            9 PRLLLKNVSCMRN----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG   78 (229)
Q Consensus         9 ~~l~l~~l~~~~~----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~   78 (229)
                      ++|+++||++.|+          ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+
T Consensus         4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~   83 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD   83 (327)
T ss_pred             ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence            5899999999995          257999999999999999999999999999999999999999999999999987643


Q ss_pred             hh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHH
Q 027067           79 IF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRL  147 (229)
Q Consensus        79 ~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv  147 (229)
                      ..  ..++..++|++|++  .+.+.+++.+++....... .     ...++.++++.+|+. ...++++++|||||||||
T Consensus        84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv  163 (327)
T PRK11308         84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRI  163 (327)
T ss_pred             HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHH
Confidence            21  23456799999997  5888899999986543221 1     123467889999996 477999999999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||+.+|++||+||||++||..++..+.++|.+++++ |.|+|+||||++.+..++|
T Consensus       164 ~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad  223 (327)
T PRK11308        164 AIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD  223 (327)
T ss_pred             HHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999999999999998764 8999999999999988764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-49  Score=367.68  Aligned_cols=198  Identities=23%  Similarity=0.342  Sum_probs=175.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|  ++|+|+++|+++.........+..
T Consensus         4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~   83 (506)
T PRK13549          4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG   83 (506)
T ss_pred             ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence            589999999999988999999999999999999999999999999999999996  899999999998654322223457


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhc--C------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLE--G------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~--~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      ++|++|++.+++.+|+.||+.+.....  .      ...++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus        84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~  163 (506)
T PRK13549         84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQAR  163 (506)
T ss_pred             eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence            999999998999999999998753211  0      11245678999999888899999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.++..+.+++.+++++|.|||++|||++++...+|
T Consensus       164 lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d  211 (506)
T PRK13549        164 LLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISD  211 (506)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcC
Confidence            999999999999999999999999998778999999999999988764

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=9.9e-49  Score=337.38  Aligned_cols=197  Identities=24%  Similarity=0.334  Sum_probs=168.9

Q ss_pred             CcEEEEeEEEEeCC---------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067            9 PRLLLKNVSCMRNA---------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~   79 (229)
                      ++|+++||+++|++         +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~   82 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY   82 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence            57999999999962         479999999999999999999999999999999999999999999999998864321


Q ss_pred             hhhhhhcceEeecccc--cCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA  150 (229)
                       ...+..++|++|++.  +++..|+.+++.+......      ....+.++++.+++. ...++++.+|||||||||+||
T Consensus        83 -~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la  161 (267)
T PRK15112         83 -SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA  161 (267)
T ss_pred             -hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence             223457999999874  5677899999876433221      112356789999994 677889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.+++.+++++ |.|||++||+++++..++|
T Consensus       162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d  218 (267)
T PRK15112        162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISD  218 (267)
T ss_pred             HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcC
Confidence            9999999999999999999999999999999998764 8999999999999988765

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-48  Score=334.65  Aligned_cols=197  Identities=28%  Similarity=0.373  Sum_probs=169.3

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~   81 (229)
                      .++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|.++|+++..... ..
T Consensus        10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~   89 (258)
T PRK14268         10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV   89 (258)
T ss_pred             ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence            4689999999999988999999999999999999999999999999999999985     79999999998753211 12


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ..+..++|++|++.+++ .|+.||+.+.....+.     ...+.++++.+++.    +..++++.+|||||||||+||||
T Consensus        90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara  168 (258)
T PRK14268         90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART  168 (258)
T ss_pred             HHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence            34567999999988887 8999999875432211     12345688888883    45788999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus       169 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~~~~~~~d  221 (258)
T PRK14268        169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQQAARISD  221 (258)
T ss_pred             HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999999999999999864 7999999999999988765

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.7e-49  Score=331.98  Aligned_cols=192  Identities=24%  Similarity=0.348  Sum_probs=168.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++||+++|++..  .++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....   ....++|
T Consensus         1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~   75 (232)
T PRK10771          1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSM   75 (232)
T ss_pred             CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEE
Confidence            589999999998654  39999999999999999999999999999999999999999999998764321   2357899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhc---C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLE---G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+|+.||+.+.....   .  ...++.++++.+++.+..++++.+||||||||++||||++.+|+++||||
T Consensus        76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE  155 (232)
T PRK10771         76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDE  155 (232)
T ss_pred             EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            999999999899999997642111   0  12346678999999988999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.+++.++.+ .|.|||++||+++++.+++|
T Consensus       156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d  198 (232)
T PRK10771        156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP  198 (232)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999865 48999999999999988776

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=8.1e-49  Score=323.07  Aligned_cols=189  Identities=29%  Similarity=0.487  Sum_probs=165.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+.+|++|+|+++|.++....     ...++|
T Consensus         1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~-----~~~~~~   74 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA-----KPYCTY   74 (195)
T ss_pred             CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh-----hhhEEe
Confidence            488999999998776665 99999999999999999999999999999999999999999998875321     234788


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      ++++..+++..|+.||+.+..........+.++++.+++.+..++++.+||+|||||++||||++.+|+++||||||++|
T Consensus        75 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~L  154 (195)
T PRK13541         75 IGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNL  154 (195)
T ss_pred             ccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence            98887777889999999875543333345667889999988889999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |+.+++.+.+++++..+++.|+|++||+++.++.+
T Consensus       155 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~  189 (195)
T PRK13541        155 SKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSA  189 (195)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchh
Confidence            99999999999987667789999999999877663

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-48  Score=338.11  Aligned_cols=197  Identities=25%  Similarity=0.343  Sum_probs=169.7

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcc
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~   87 (229)
                      +++++||+++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....+..+
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i   80 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV   80 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence            588999999996 467999999999999999999999999999999999999999999999999885211 112345679


Q ss_pred             eEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           88 NWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        88 ~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      +|++|++. .+...|+.||+.+......     ....+.++++.+++.++.++++.+|||||+||++|||||+.+|++||
T Consensus        81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll  160 (275)
T PRK13639         81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV  160 (275)
T ss_pred             EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999863 3334699999986532211     11345678999999989999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+.++..+.+++.+++++|.|||++||+++++.+.+|
T Consensus       161 lDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d  205 (275)
T PRK13639        161 LDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD  205 (275)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            999999999999999999999987778999999999999988775

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-49  Score=338.14  Aligned_cols=198  Identities=25%  Similarity=0.334  Sum_probs=170.6

Q ss_pred             CCCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            7 PLPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +.++++++|++++|+  ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++
T Consensus         4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~   82 (271)
T PRK13632          4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENL-KEIR   82 (271)
T ss_pred             cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCH-HHHh
Confidence            346899999999995  5689999999999999999999999999999999999999999999999999864322 2345


Q ss_pred             hcceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           85 LQLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        85 ~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      ..++|++|++. .++..|+.||+.+...... .    ...+.++++.+++.+..++++.+||||||||++|||||+.+|+
T Consensus        83 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  162 (271)
T PRK13632         83 KKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPE  162 (271)
T ss_pred             cceEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            67999999874 5667899999987543211 1    1235678899999989999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||+|||+.+++.+.+++.+++++ +.|||++||+++++. .+|
T Consensus       163 lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d  210 (271)
T PRK13632        163 IIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LAD  210 (271)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCC
Confidence            99999999999999999999999998766 489999999999885 454

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=1.5e-48  Score=327.44  Aligned_cols=197  Identities=25%  Similarity=0.347  Sum_probs=167.2

Q ss_pred             cEEEEeEEEEeCC-------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc--CE--eCCCCc
Q 027067           10 RLLLKNVSCMRNA-------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN--GH--DITQSG   78 (229)
Q Consensus        10 ~l~l~~l~~~~~~-------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~--g~--~~~~~~   78 (229)
                      ||+++||+++|++       +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++  |.  ++...+
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~   80 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS   80 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence            5899999999962       479999999999999999999999999999999999999999999998  43  443222


Q ss_pred             hhh--h-hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHH
Q 027067           79 IFH--Q-YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        79 ~~~--~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~l  149 (229)
                      ...  . .+..++|++|++.+++.+|+.||+.+.......     ...+.++++.+++.+ ..++++.+||||||||++|
T Consensus        81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~l  160 (224)
T TIGR02324        81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNI  160 (224)
T ss_pred             HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHH
Confidence            111  1 234689999999999999999999764322111     224567889999976 4588999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+.+|++|||||||++||+.+++.+.+++++++++|.|||++||+++.+..++|
T Consensus       161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d  217 (224)
T TIGR02324       161 ARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVAD  217 (224)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence            999999999999999999999999999999999988778999999999999988776

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-48  Score=334.34  Aligned_cols=196  Identities=26%  Similarity=0.335  Sum_probs=169.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCC--Cchhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQ--SGIFH   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~--~~~~~   81 (229)
                      ++|+++||+++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++|     ++|+|+++|+++..  ... .
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~-~   81 (253)
T PRK14267          3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP-I   81 (253)
T ss_pred             ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh-H
Confidence            479999999999988999999999999999999999999999999999999987     49999999998852  111 2


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      .++..++|++|++.+++.+|+.||+.+......   .    ...+.++++.+++.    ...++++.+|||||||||+||
T Consensus        82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la  161 (253)
T PRK14267         82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIA  161 (253)
T ss_pred             HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHH
Confidence            345679999999999999999999987543211   1    12345678888874    356889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.++++++++ ++|||++||+++++...+|
T Consensus       162 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d  216 (253)
T PRK14267        162 RALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPAQAARVSD  216 (253)
T ss_pred             HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHHHHHhhCC
Confidence            999999999999999999999999999999999865 6899999999999888765

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-48  Score=336.64  Aligned_cols=201  Identities=24%  Similarity=0.292  Sum_probs=170.2

Q ss_pred             CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-h
Q 027067            6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-I   79 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~   79 (229)
                      +..++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|.++|+++.... .
T Consensus         9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~   88 (269)
T PRK14259          9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD   88 (269)
T ss_pred             CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence            34568999999999998899999999999999999999999999999999999987     68999999999875211 1


Q ss_pred             hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      ...++..++|++|++.+++. |+.||+.+.......    ...+.++++.+++.    +..++++.+|||||||||+|||
T Consensus        89 ~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lar  167 (269)
T PRK14259         89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIAR  167 (269)
T ss_pred             HHHHhhceEEEccCCccchh-hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHH
Confidence            12345679999999888874 999999875432211    12345567888763    4578899999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR  208 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~  208 (229)
                      ||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+.+|.-
T Consensus       168 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d~i  223 (269)
T PRK14259        168 TIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQQAVRVSDMT  223 (269)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEE
Confidence            99999999999999999999999999999999854 789999999999999887643

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.9e-48  Score=326.38  Aligned_cols=195  Identities=25%  Similarity=0.365  Sum_probs=170.1

Q ss_pred             EEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhhh
Q 027067           11 LLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQYK   84 (229)
Q Consensus        11 l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~~   84 (229)
                      ++++|+++.|++    +.+|+++||++++|++++|+|+||||||||+++|+|+++|++|+|+++|+++......  ..++
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~   81 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR   81 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence            789999999975    6799999999999999999999999999999999999999999999999988543321  1345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      ..++|++|++.+++.+|+.||+.+......      ....+.++++.+++.+..++++.+||+|||||++|||||+.+|+
T Consensus        82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~  161 (220)
T TIGR02982        82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK  161 (220)
T ss_pred             hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            679999999999988999999987543221      11245678999999988999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||||||++||+.+++.+.++++++++ .++|||++||+++. .+.+|
T Consensus       162 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d  209 (220)
T TIGR02982       162 LVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVAD  209 (220)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCC
Confidence            9999999999999999999999999876 48999999999974 45555

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=2.2e-48  Score=333.34  Aligned_cols=198  Identities=21%  Similarity=0.264  Sum_probs=168.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-----CCCCchhh--
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-----ITQSGIFH--   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-----~~~~~~~~--   81 (229)
                      ++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++     +.......  
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~   84 (258)
T PRK11701          5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR   84 (258)
T ss_pred             ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence            47999999999988899999999999999999999999999999999999999999999999988     55432211  


Q ss_pred             h-hhhcceEeecccc--cCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHH
Q 027067           82 Q-YKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 ~-~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      . .+..++|++|++.  +++.+|+.+|+.+......      ....+.++++.+++. ...++.+.+|||||||||+|||
T Consensus        85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar  164 (258)
T PRK11701         85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR  164 (258)
T ss_pred             HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence            1 2346899999873  5667789999865321111      122356788999997 4789999999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+|++|||||||++||+.+++.+.+.+++++++ |.|||++||+++++.+++|
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d  220 (258)
T PRK11701        165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH  220 (258)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence            999999999999999999999999999999998664 8999999999999988765

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.5e-48  Score=329.56  Aligned_cols=194  Identities=31%  Similarity=0.408  Sum_probs=172.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++++++|+||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|+++.....   .+..++|+
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~   77 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTV   77 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEE
Confidence            478999999999999999999999999999999999999999999999999999999999998865322   24578999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.+|+.+......     ......++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||||
T Consensus        78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP  157 (232)
T cd03300          78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP  157 (232)
T ss_pred             ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999999888999999976543221     122456788999999899999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+|||+.+++.+.+++++++++ |.|||++||+++++.+++|.
T Consensus       158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~  200 (232)
T cd03300         158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR  200 (232)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence            9999999999999999998764 89999999999999887763

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-48  Score=338.26  Aligned_cols=195  Identities=26%  Similarity=0.334  Sum_probs=168.0

Q ss_pred             CcEEEEeEEEEeCC------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067            9 PRLLLKNVSCMRNA------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~   82 (229)
                      ++++++|++++|++      +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++........
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~   82 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD   82 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence            48999999999963      579999999999999999999999999999999999999999999999998864321123


Q ss_pred             hhhcceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           83 YKLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        83 ~~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      .++.++|++|++. .+...++.+|+.+.....+.     ...+.++++.+|+.+..++++.+|||||||||+|||||+.+
T Consensus        83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~  162 (280)
T PRK13633         83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR  162 (280)
T ss_pred             HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence            4567999999864 23346899999875432211     23456789999999999999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~  203 (229)
                      |++|||||||+|||+.+++.+.+++.++++ .|.|||++||+++++..
T Consensus       163 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~  210 (280)
T PRK13633        163 PECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE  210 (280)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc
Confidence            999999999999999999999999999865 48999999999999875

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-48  Score=332.54  Aligned_cols=197  Identities=25%  Similarity=0.297  Sum_probs=169.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~~~   83 (229)
                      +++++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++.... ....+
T Consensus         4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~   83 (258)
T PRK14241          4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV   83 (258)
T ss_pred             cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence            79999999999988999999999999999999999999999999999999974     7999999999874311 11234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++..|+.||+.+.......      ...+.++++.+++.    +..++++.+|||||||||+|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral  163 (258)
T PRK14241         84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI  163 (258)
T ss_pred             hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence            56799999999999989999999865432211      12345678888884    467889999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ ++|||++||+++++.+.+|.
T Consensus       164 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~~~~~~~d~  216 (258)
T PRK14241        164 AVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQQAARVSDQ  216 (258)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence            999999999999999999999999999999854 68999999999999887764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-48  Score=333.88  Aligned_cols=197  Identities=27%  Similarity=0.350  Sum_probs=168.9

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~   81 (229)
                      .++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|+++.... ...
T Consensus        17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~   96 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV   96 (267)
T ss_pred             CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence            3689999999999988999999999999999999999999999999999999975     8999999999885321 112


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC---c----cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG---K----QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lA  150 (229)
                      ..+..++|++|++.+++. |+.||+.+......   .    ..++.++++.+++.+    ..++++.+|||||||||+||
T Consensus        97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la  175 (267)
T PRK14235         97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIA  175 (267)
T ss_pred             HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHH
Confidence            345679999999888875 99999987543211   1    123467888999953    46788999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++...+|
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~~~~~~~d  230 (267)
T PRK14235        176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQQAARVSQ  230 (267)
T ss_pred             HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHHHHHhhCC
Confidence            999999999999999999999999999999999865 6899999999999988765

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.7e-48  Score=348.39  Aligned_cols=190  Identities=22%  Similarity=0.331  Sum_probs=166.4

Q ss_pred             eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhcceEee
Q 027067           15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQLNWLS   91 (229)
Q Consensus        15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~~~~~~   91 (229)
                      ||+++|+++.+  ++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   ....++.++|++
T Consensus         4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~   81 (354)
T TIGR02142         4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF   81 (354)
T ss_pred             EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence            89999988764  9999999999999999999999999999999999999999999998753210   112356799999


Q ss_pred             cccccCCCCCHHHhHHHHHHhcCc---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           92 LKDAVKEKFTVLDNVQWFEVLEGK---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        92 ~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      |++.+++.+|+.||+.+.......   ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus        82 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~  161 (354)
T TIGR02142        82 QEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA  161 (354)
T ss_pred             cCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            999999999999999875432111   22367789999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+++.+.+++++++++ |.|||++||+++++..++|
T Consensus       162 LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d  200 (354)
T TIGR02142       162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD  200 (354)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            9999999999999998765 8999999999999988765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-48  Score=363.97  Aligned_cols=198  Identities=24%  Similarity=0.353  Sum_probs=175.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........++.+++
T Consensus         3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~   82 (501)
T PRK11288          3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA   82 (501)
T ss_pred             ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence            58999999999998899999999999999999999999999999999999999999999999998864332223456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHH--hcC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEV--LEG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~--~~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      |++|++.+++.+|+.||+.+...  ...      ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (501)
T PRK11288         83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI  162 (501)
T ss_pred             EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            99999989999999999987421  111      1234567899999987789999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus       163 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d  208 (501)
T PRK11288        163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCD  208 (501)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999998789999999999999988764

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-48  Score=344.26  Aligned_cols=198  Identities=15%  Similarity=0.215  Sum_probs=168.0

Q ss_pred             CcEEEEeEEEEe----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEEcCEeCCCCchh
Q 027067            9 PRLLLKNVSCMR----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK----PSAGEILWNGHDITQSGIF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~   80 (229)
                      ++|+++||+++|    +...+|+||||+|++||+++|+|+||||||||+++|+|+++    |++|+|+|+|+++......
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~   81 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence            479999999999    44679999999999999999999999999999999999986    5899999999998754322


Q ss_pred             hh---hhhcceEeecccc--cCCCCCHHHhHHHHHHh---cC--------ccccHHHHHHHhCCCh---hhcCCCCCCCh
Q 027067           81 HQ---YKLQLNWLSLKDA--VKEKFTVLDNVQWFEVL---EG--------KQGNSLPALELMGLGR---LAKEKARMLSM  141 (229)
Q Consensus        81 ~~---~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~---~~--------~~~~~~~~l~~~~l~~---~~~~~~~~LSg  141 (229)
                      ..   .++.++|++|++.  +.+.+|+.+++......   ..        ...++.++++.+||.+   ..++++++|||
T Consensus        82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg  161 (330)
T PRK15093         82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE  161 (330)
T ss_pred             HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence            11   1246999999875  67788999998653211   00        1134567899999974   46899999999


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||||+.+|++||+||||++||+.++..+.+++++++++ |.|||+||||++.+..++|
T Consensus       162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~d  227 (330)
T PRK15093        162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD  227 (330)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999999999999999999999999998764 8999999999999988764

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-48  Score=333.51  Aligned_cols=200  Identities=28%  Similarity=0.341  Sum_probs=169.2

Q ss_pred             CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch
Q 027067            5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI   79 (229)
Q Consensus         5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~   79 (229)
                      .++.++++++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+     |++|+|+++|+++.....
T Consensus        16 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   95 (268)
T PRK14248         16 EAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI   95 (268)
T ss_pred             CCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence            345578999999999998899999999999999999999999999999999999864     789999999998854211


Q ss_pred             -hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHH
Q 027067           80 -FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        80 -~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~  148 (229)
                       ....+..++|++|++.+++. |+.||+.+.......      ...+.++++.+++.    +..++++.+||||||||++
T Consensus        96 ~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~  174 (268)
T PRK14248         96 NVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLC  174 (268)
T ss_pred             cHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHH
Confidence             12345679999999888875 999999865322111      12245567788874    4568899999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|++|||||||+|||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       175 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d  231 (268)
T PRK14248        175 IARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQQALRVSD  231 (268)
T ss_pred             HHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHHHHHHhCC
Confidence            99999999999999999999999999999999999865 6899999999999988775

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.4e-48  Score=330.98  Aligned_cols=194  Identities=27%  Similarity=0.348  Sum_probs=168.4

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +++++|+++.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+|+++|+++..... ..++..
T Consensus         2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~-~~~~~~   80 (246)
T PRK14269          2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV-VALRKN   80 (246)
T ss_pred             ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH-HHHhhh
Confidence            6899999999998899999999999999999999999999999999999974   699999999999865432 234567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++ .|++||+.+......       ...++.++++.+++.    +..++++.+|||||||||+|||||+.
T Consensus        81 i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~  159 (246)
T PRK14269         81 VGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAI  159 (246)
T ss_pred             EEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            999999998886 699999987543221       112345778999995    34688899999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|+++||||||++||+.++..+.+.+.++.+ +.|||++||+++++.+++|
T Consensus       160 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d  209 (246)
T PRK14269        160 KPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQQGKRVAD  209 (246)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhhCc
Confidence            9999999999999999999999999999864 8999999999999988765

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-48  Score=336.42  Aligned_cols=196  Identities=27%  Similarity=0.298  Sum_probs=170.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC--------ccEEEEcCEeCCCCchhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--------AGEILWNGHDITQSGIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~--------~G~I~~~g~~~~~~~~~~   81 (229)
                      ||+++|++++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|+        +|+|.++|.++..... .
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~-~   79 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA-P   79 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH-H
Confidence            589999999999999999999999999999999999999999999999999998        9999999998764332 2


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhc----C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE----G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ..+..++|++|++.+++.+|+.||+.+.....    .     ....+.++++.+++.+..++++.+|||||||||+||||
T Consensus        80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  159 (272)
T PRK13547         80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARV  159 (272)
T ss_pred             HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            34456899999887666789999997642110    0     11235678889999988999999999999999999999


Q ss_pred             Hh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          153 LA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |+         .+|++|||||||++||+.+++.+.++++++.++ |.|||++||+++++.+++|
T Consensus       160 l~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d  223 (272)
T PRK13547        160 LAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD  223 (272)
T ss_pred             HhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence            99         599999999999999999999999999998765 8999999999999988765

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=1.1e-48  Score=320.76  Aligned_cols=181  Identities=27%  Similarity=0.374  Sum_probs=154.1

Q ss_pred             eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcceEeecccc-cC
Q 027067           20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLNWLSLKDA-VK   97 (229)
Q Consensus        20 ~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~~~~~~~~-~~   97 (229)
                      |+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... .....+..++|++|++. .+
T Consensus         2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~   81 (190)
T TIGR01166         2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL   81 (190)
T ss_pred             CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence            46678999999999999999999999999999999999999999999999999875211 11234567899999873 23


Q ss_pred             CCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           98 EKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      ...|+.||+.+...... .    ..++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||++||+.
T Consensus        82 ~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~  161 (190)
T TIGR01166        82 FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPA  161 (190)
T ss_pred             ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence            35699999987533211 1    123567889999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          173 GVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      +++.+.+++.+++++|.|||++||++++
T Consensus       162 ~~~~~~~~l~~~~~~~~tili~sH~~~~  189 (190)
T TIGR01166       162 GREQMLAILRRLRAEGMTVVISTHDVDL  189 (190)
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence            9999999999998778999999999864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.8e-48  Score=342.60  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=167.8

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEEcCEeCCCCchhh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK----PSAGEILWNGHDITQSGIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~----p~~G~I~~~g~~~~~~~~~~   81 (229)
                      +|+++||++.|+.    ..+|+||||+|++||++||+|+||||||||+++|+|+++    |++|+|.++|+++.......
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~   82 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE   82 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence            6999999999976    479999999999999999999999999999999999997    48999999999987543211


Q ss_pred             --h-hhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCCh---hhcCCCCCCChhHHHHH
Q 027067           82 --Q-YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLGR---LAKEKARMLSMGQRKRL  147 (229)
Q Consensus        82 --~-~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv  147 (229)
                        . .++.++|++|++  .+.+.+++.+++....... +     ..+.+.++++.+||.+   ..++++++|||||||||
T Consensus        83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv  162 (326)
T PRK11022         83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV  162 (326)
T ss_pred             HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence              1 123699999997  5788899988875433221 1     1234668899999963   56899999999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||+.+|++||+||||++||+.++..+.++++++++ .|.|+|+||||++.+...+|
T Consensus       163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad  222 (326)
T PRK11022        163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH  222 (326)
T ss_pred             HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999999876 58999999999999987664

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=4.4e-48  Score=330.37  Aligned_cols=199  Identities=22%  Similarity=0.226  Sum_probs=167.3

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-----CCCCchhh--
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-----ITQSGIFH--   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-----~~~~~~~~--   81 (229)
                      ++|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|++     +.......  
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~   81 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR   81 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence            47999999999998889999999999999999999999999999999999999999999999976     54332211  


Q ss_pred             -hhhhcceEeecccc--cCCCCCHHHhHHHHHH-hc-----CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHH
Q 027067           82 -QYKLQLNWLSLKDA--VKEKFTVLDNVQWFEV-LE-----GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 -~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~-~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                       ..+..++|++|++.  +++..++.+|+.+... ..     .....+.++++.+++. ...++.+.+|||||||||+|||
T Consensus        82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar  161 (253)
T TIGR02323        82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR  161 (253)
T ss_pred             HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence             12346899999864  4455688888864321 11     1123456789999997 5789999999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||+.+|++|||||||++||+.+++.+.+++.++.+ .|.|||+|||+++++.+.+|.
T Consensus       162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~  218 (253)
T TIGR02323       162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQR  218 (253)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence            99999999999999999999999999999998765 489999999999999887653

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.4e-48  Score=335.39  Aligned_cols=199  Identities=24%  Similarity=0.315  Sum_probs=170.5

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~   80 (229)
                      ..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|+++..... .
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~  115 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP  115 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence            4468999999999998899999999999999999999999999999999999987     689999999998753211 1


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ...+..++|++|++.+++. |+.||+.+......    ...++.++++.+++.    +..++++.+|||||||||+||||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAra  194 (285)
T PRK14254        116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARA  194 (285)
T ss_pred             HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHH
Confidence            2345679999999888875 99999987543221    123456778888884    45789999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+.+|++|||||||++||+.+++.+.++|+++++ +.|||++||+++++..++|.
T Consensus       195 L~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~~i~~~~dr  248 (285)
T PRK14254        195 IAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQQAARISDK  248 (285)
T ss_pred             HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHhhcCE
Confidence            9999999999999999999999999999999876 47999999999999887764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.5e-48  Score=333.02  Aligned_cols=195  Identities=24%  Similarity=0.300  Sum_probs=169.3

Q ss_pred             CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      .++++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...+.
T Consensus         5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~   83 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNF-EKLRK   83 (269)
T ss_pred             CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH-HHHHh
Confidence            358999999999975  459999999999999999999999999999999999999999999999998865332 23456


Q ss_pred             cceEeecccc-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           86 QLNWLSLKDA-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        86 ~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      .++|++|++. +++..++.+|+.+......     ....+.++++.+++.+..++++.+||+|||||++||||++.+|++
T Consensus        84 ~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l  163 (269)
T PRK13648         84 HIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV  163 (269)
T ss_pred             heeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            7999999874 6777899999876533211     112356788999999889999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED  203 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~  203 (229)
                      |||||||++||+.+++.+.+++.+++++ |.|||++||+++++..
T Consensus       164 llLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~  208 (269)
T PRK13648        164 IILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME  208 (269)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc
Confidence            9999999999999999999999998764 8999999999998865

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-48  Score=328.28  Aligned_cols=197  Identities=25%  Similarity=0.347  Sum_probs=167.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC---CCC--CccEEEEcCEeCCCCch-hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF---SKP--SAGEILWNGHDITQSGI-FHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl---~~p--~~G~I~~~g~~~~~~~~-~~~   82 (229)
                      ++|+++|+++.|+++++|+|+||+|++||+++|+||||||||||+++|+|+   ++|  ++|+|.++|+++..... ...
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   81 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE   81 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence            589999999999988999999999999999999999999999999999997   454  58999999998864211 123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++ .|+.||+.+......      ....+.++++.+++.    +..++++.+|||||||||+||||
T Consensus        82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  160 (250)
T PRK14245         82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARA  160 (250)
T ss_pred             HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHH
Confidence            4567999999988886 599999986533221      112345778888885    35688999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+.+|++|||||||+|||+.+++.+.+++++++ +++|||++||+++++.+.+|.
T Consensus       161 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~  214 (250)
T PRK14245        161 MAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQQAARVSDK  214 (250)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhCCE
Confidence            999999999999999999999999999999985 478999999999999887753

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.8e-48  Score=330.15  Aligned_cols=198  Identities=25%  Similarity=0.365  Sum_probs=168.6

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-h
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-F   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~   80 (229)
                      +.++|+++|+++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++  |   ++|+|+++|+++..... .
T Consensus         9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~   88 (259)
T PRK14274          9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL   88 (259)
T ss_pred             CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence            4468999999999998899999999999999999999999999999999999987  3   58999999998753211 1


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      ..++..++|++|++.+++. |++||+.+.....+.      ..++.++++.+++.    +..++++.+||||||||++||
T Consensus        89 ~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~la  167 (259)
T PRK14274         89 VELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIA  167 (259)
T ss_pred             HHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence            2345679999999888875 999999875432211      12245678888885    346889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.++..+.+++.++++ +.|+|++||+++++.+++|
T Consensus       168 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~~~~~~~d  222 (259)
T PRK14274        168 RALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQQAARVSD  222 (259)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhCC
Confidence            999999999999999999999999999999999865 7899999999999988775

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.7e-48  Score=327.11  Aligned_cols=194  Identities=30%  Similarity=0.397  Sum_probs=172.5

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|+++|.++....   ..+..++|+
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~~~~~i~~~   77 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---ARDRKIGFV   77 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---hhhcCEEEE
Confidence            47899999999999999999999999999999999999999999999999999999999999886432   234579999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++..|+.||+.+.....+.     .....++++.+++.+..++.+.+||+||+||++|||||+.+|+++|||||
T Consensus        78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP  157 (237)
T TIGR00968        78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP  157 (237)
T ss_pred             ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999999889999999865432211     22356788999998889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.+++++ ++|||++||+++++.+++|.
T Consensus       158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~  200 (237)
T TIGR00968       158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR  200 (237)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence            9999999999999999998765 89999999999999887753

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.3e-48  Score=336.33  Aligned_cols=198  Identities=22%  Similarity=0.280  Sum_probs=166.9

Q ss_pred             CcEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC----ch
Q 027067            9 PRLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS----GI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----~~   79 (229)
                      ..|+++||+++|+++     ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++...    ..
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~   84 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE   84 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence            469999999999764     499999999999999999999999999999999999999999999999987421    11


Q ss_pred             hhhhhhcceEeeccccc-CCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDAV-KEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~~-~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ...++..++|++|++.. +...|+.||+.+...... .    ...+.++++.+++. +..++++.+|||||||||+||||
T Consensus        85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara  164 (289)
T PRK13645         85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI  164 (289)
T ss_pred             HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence            12345679999998632 223599999987543211 1    12345678899994 68899999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.+++.++.+ .|+|||++||+++++..++|
T Consensus       165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d  219 (289)
T PRK13645        165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD  219 (289)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999999999999999865 48999999999999888765

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.1e-47  Score=340.15  Aligned_cols=201  Identities=20%  Similarity=0.241  Sum_probs=170.4

Q ss_pred             CCCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCc
Q 027067            6 PPLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSG   78 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~   78 (229)
                      ...++|+++||++.|+    ...+|+||||+|++||+++|+|+||||||||+++|+|+++|+   +|+|+|+|+++...+
T Consensus         8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~   87 (330)
T PRK09473          8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP   87 (330)
T ss_pred             CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence            3457899999999994    367999999999999999999999999999999999999996   999999999987654


Q ss_pred             hhh--hhh-hcceEeeccc--ccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCCh---hhcCCCCCCChhHH
Q 027067           79 IFH--QYK-LQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLGR---LAKEKARMLSMGQR  144 (229)
Q Consensus        79 ~~~--~~~-~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~~---~~~~~~~~LSgGqk  144 (229)
                      ...  ..+ ..++|++|++  .+++.+|+.+++........  .    ..++.++++.+++.+   ..++++++|||||+
T Consensus        88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~  167 (330)
T PRK09473         88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR  167 (330)
T ss_pred             HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence            221  122 4799999997  68888999998865432211  1    134567889999964   35789999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||||+.+|++||+||||++||+.++..+.+++.+++++ |.|+|+||||++.+..++|
T Consensus       168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~D  230 (330)
T PRK09473        168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD  230 (330)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999999999999999999999998765 8999999999999987664

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-47  Score=327.52  Aligned_cols=196  Identities=28%  Similarity=0.348  Sum_probs=168.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~   82 (229)
                      ++++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|+++|+++..... ...
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   82 (251)
T PRK14270          3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE   82 (251)
T ss_pred             cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence            689999999999988999999999999999999999999999999999999875     79999999998854221 123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++ .|+.||+.+.....+.      ..++.++++.+++.    +..++++.+||+|||||++||||
T Consensus        83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  161 (251)
T PRK14270         83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIART  161 (251)
T ss_pred             HHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            4567999999988887 8999999875433211      12345678888874    45788999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++.+|++|||||||+|||+.++..+.++++++++ +.|||++||+++++.+.+|
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d  214 (251)
T PRK14270        162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQQASRVSD  214 (251)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHHHHHHhcC
Confidence            9999999999999999999999999999999866 5899999999999888765

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.9e-48  Score=334.32  Aligned_cols=196  Identities=25%  Similarity=0.270  Sum_probs=170.0

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---cEEEEcCEeCCCCchhhhh
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQSGIFHQY   83 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~~~~~~~~   83 (229)
                      .+|+++|++++|++  +++++++||+|++||+++|+||||||||||+++|+|+++|++   |+|+++|+++..... ...
T Consensus         4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~-~~~   82 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV-WDI   82 (282)
T ss_pred             ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH-HHH
Confidence            57999999999964  569999999999999999999999999999999999999987   899999999865332 234


Q ss_pred             hhcceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           84 KLQLNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        84 ~~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +.+++|++|++. .++..|+.||+.+.......     ..++.++++.+++.+..++++.+|||||+||++|||||+.+|
T Consensus        83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P  162 (282)
T PRK13640         83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEP  162 (282)
T ss_pred             HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence            567999999974 56778999999865332221     123567899999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||+|||+.+++.+.+++.++.++ |.|||++||+++++. .+|
T Consensus       163 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d  211 (282)
T PRK13640        163 KIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MAD  211 (282)
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCC
Confidence            999999999999999999999999998764 899999999999985 454

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=8.6e-48  Score=311.47  Aligned_cols=163  Identities=29%  Similarity=0.500  Sum_probs=150.3

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|+++++|+++||++.+||+++|+||||||||||+++|+|+++|++|+|+++|+++....  ..++..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~   78 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYL   78 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--HhhhccEEEE
Confidence            47899999998888999999999999999999999999999999999999999999999999876432  2345679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      +|++.+++..|+.||+.                               |||||+||++|||||+.+|+++||||||++||
T Consensus        79 ~q~~~~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD  127 (173)
T cd03230          79 PEEPSLYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD  127 (173)
T ss_pred             ecCCccccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCC
Confidence            99999888889999863                               99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+++.+.+++++++++|.|+|++||+++++.+++|
T Consensus       128 ~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d  163 (173)
T cd03230         128 PESRREFWELLRELKKEGKTILLSSHILEEAERLCD  163 (173)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCC
Confidence            999999999999987778999999999999888776

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=1.4e-47  Score=326.95  Aligned_cols=197  Identities=24%  Similarity=0.318  Sum_probs=167.3

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      .++|+++||++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+  ++|++|+|+++|.++...........
T Consensus         5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~   84 (252)
T CHL00131          5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL   84 (252)
T ss_pred             CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence            3579999999999988999999999999999999999999999999999998  57999999999998865432111122


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhc----C---c-----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHH
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLE----G---K-----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLAR  151 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~----~---~-----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAr  151 (229)
                      .++|++|++.+++..++.+|+.+.....    .   .     ...+.++++.+++. ...++++. +|||||+|||+|||
T Consensus        85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~  164 (252)
T CHL00131         85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQ  164 (252)
T ss_pred             eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHH
Confidence            4778999988899899999987542210    0   0     12345678999997 46788887 59999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++||+++++...
T Consensus       165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~  217 (252)
T CHL00131        165 MALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYI  217 (252)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence            99999999999999999999999999999999877789999999999988764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=7e-48  Score=313.35  Aligned_cols=168  Identities=35%  Similarity=0.467  Sum_probs=152.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-hhhhhhcceE
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~~~~~   89 (229)
                      ++++|++++|+++++++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....+..++|
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~   80 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM   80 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence            478999999998899999999999999999999999999999999999999999999999998765320 1234568999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      ++|++.+++..|+.||+.+.                             ||||||||++|||||+.+|+++||||||++|
T Consensus        81 ~~q~~~~~~~~t~~~~l~~~-----------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~L  131 (178)
T cd03229          81 VFQDFALFPHLTVLENIALG-----------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSAL  131 (178)
T ss_pred             EecCCccCCCCCHHHheeec-----------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence            99999888888999987542                             9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          170 DYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+.++..+.+++++++++ +.|+|++||+++++.+++|.
T Consensus       132 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~  170 (178)
T cd03229         132 DPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADR  170 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCE
Confidence            999999999999998776 79999999999999887763

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-47  Score=332.39  Aligned_cols=193  Identities=24%  Similarity=0.273  Sum_probs=168.7

Q ss_pred             cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +|+++||+++|++   ..+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|+++|+++..... ...+..
T Consensus         4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~-~~~~~~   82 (277)
T PRK13642          4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV-WNLRRK   82 (277)
T ss_pred             eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH-HHHhcc
Confidence            7999999999974   359999999999999999999999999999999999999999999999999865332 234567


Q ss_pred             ceEeecccc-cCCCCCHHHhHHHHHHhcC-c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEG-K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++|++. +++..|+.||+.+...... .    ...+.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus        83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~ll  162 (277)
T PRK13642         83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEII  162 (277)
T ss_pred             eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999974 5667899999986533211 1    123567889999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIED  203 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~  203 (229)
                      ||||||++||+.+++.+.+++.+++++ |.|||++||+++++..
T Consensus       163 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~  206 (277)
T PRK13642        163 ILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS  206 (277)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            999999999999999999999998765 8999999999999864

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=1.2e-47  Score=324.71  Aligned_cols=192  Identities=31%  Similarity=0.421  Sum_probs=169.9

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|++++|+++ +|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|+++|.++.....   .+..++|+
T Consensus         1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~---~~~~i~~~   76 (235)
T cd03299           1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYV   76 (235)
T ss_pred             CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh---hHcCEEEE
Confidence            5789999999875 8999999999999999999999999999999999999999999999998865322   24579999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+|+.||+.+......     ....+.++++.+++.+..++++.+|||||+||++||||++.+|++++||||
T Consensus        77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  156 (235)
T cd03299          77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP  156 (235)
T ss_pred             eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence            999999988999999986543221     112356789999999889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.++++++..+ |.|+|++||++.++.+.+|
T Consensus       157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d  198 (235)
T cd03299         157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALAD  198 (235)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999998654 8999999999999988765

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-47  Score=326.45  Aligned_cols=195  Identities=29%  Similarity=0.387  Sum_probs=165.9

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~~   83 (229)
                      .|+++||++.|+++++++|+||+|++||+++|+||||||||||+++|+|+.+|     ++|+|+++|+++..... ....
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   82 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL   82 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence            58999999999988999999999999999999999999999999999999763     69999999998753211 1234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++ .|+.||+.+.....+.      ...+.++++.+++.    +..++++.+|||||||||+|||||
T Consensus        83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  161 (250)
T PRK14240         83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL  161 (250)
T ss_pred             hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            567999999988887 8999999875432211      12345567788764    456889999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++.+.+++|
T Consensus       162 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d  213 (250)
T PRK14240        162 AVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQQASRISD  213 (250)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHHHHHhhCC
Confidence            999999999999999999999999999999854 7899999999999888765

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-47  Score=327.50  Aligned_cols=196  Identities=26%  Similarity=0.311  Sum_probs=167.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~   82 (229)
                      ++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++     |++|+|.++|+++.... ....
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~   82 (251)
T PRK14251          3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE   82 (251)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence            37999999999998899999999999999999999999999999999999997     47999999999875321 1123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ++..++|++|++.+++ .|+.||+.+.....+.      ...+.++++.+++.    ...++++.+||||||||++||||
T Consensus        83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lara  161 (251)
T PRK14251         83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARA  161 (251)
T ss_pred             hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHH
Confidence            4567999999988876 6999999865332211      12345678888884    45688999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       162 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~~~~~~~d  214 (251)
T PRK14251        162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQQAGRISD  214 (251)
T ss_pred             HhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHHHHHhhcC
Confidence            9999999999999999999999999999999854 6899999999999988765

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-47  Score=330.93  Aligned_cols=200  Identities=26%  Similarity=0.355  Sum_probs=167.7

Q ss_pred             CCCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-
Q 027067            5 KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-   78 (229)
Q Consensus         5 ~~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-   78 (229)
                      .|..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++     |++|+|+++|+++.... 
T Consensus        19 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             CCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            345568999999999998889999999999999999999999999999999999987     69999999999875311 


Q ss_pred             hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--c----ccHHHHHHHhC----CChhhcCCCCCCChhHHHHHH
Q 027067           79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--Q----GNSLPALELMG----LGRLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~----~~~~~~l~~~~----l~~~~~~~~~~LSgGqkqRv~  148 (229)
                      .....+..++|++|++.+++. |+.||+.+.......  .    ..+.++++.++    +.+..++++.+||||||||++
T Consensus        99 ~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~  177 (271)
T PRK14238         99 SVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLC  177 (271)
T ss_pred             cHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHH
Confidence            112345679999999888774 999999875432211  1    11234455554    345678899999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|++|||||||++||+.+++.+.+++.++.+ +.|||++||+++++..++|
T Consensus       178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~i~~~~d  234 (271)
T PRK14238        178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQQAARISD  234 (271)
T ss_pred             HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHHHHHHhCC
Confidence            99999999999999999999999999999999999865 7899999999999988775

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.9e-47  Score=326.15  Aligned_cols=196  Identities=26%  Similarity=0.327  Sum_probs=166.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CC---CccEEEEcCEeCCCCch-hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KP---SAGEILWNGHDITQSGI-FHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p---~~G~I~~~g~~~~~~~~-~~~   82 (229)
                      ++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+.  +|   ++|+|+++|+++..... ...
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~   83 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD   83 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence            4799999999999889999999999999999999999999999999999995  46   59999999998753211 123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ++..++|++|++.+++ .|+.||+.+.....+.      ...+.++++.+++.    +..++++.+|||||||||+||||
T Consensus        84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara  162 (252)
T PRK14239         84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARV  162 (252)
T ss_pred             hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHH
Confidence            4567999999988887 7999999875432211      12244567888874    45688999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.++++++.+ +.|||++||+++++..++|
T Consensus       163 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d  215 (252)
T PRK14239        163 LATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQQASRISD  215 (252)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHHHHHHhCC
Confidence            9999999999999999999999999999999865 6899999999999888765

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3.8e-48  Score=324.09  Aligned_cols=192  Identities=32%  Similarity=0.464  Sum_probs=162.9

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++|++++|++  +.+++|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++..... ...+..+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i   80 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI   80 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH-HHHHhhE
Confidence            3789999999975  579999999999999999999999999999999999999999999999998754332 2235579


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCC-----------CCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKA-----------RMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++ .|+.||+.+.... .......++++.+++.+..++.+           .+||||||||++||||++.+
T Consensus        81 ~~~~q~~~~~~-~tv~e~l~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~  158 (220)
T cd03245          81 GYVPQDVTLFY-GTLRDNITLGAPL-ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND  158 (220)
T ss_pred             EEeCCCCcccc-chHHHHhhcCCCC-CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            99999988876 5999998764211 11224556788888877776654           69999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+++.+++++ .|||++||+++.+ +.+|
T Consensus       159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~-~~~d  206 (220)
T cd03245         159 PPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSLL-DLVD  206 (220)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHH-HhCC
Confidence            9999999999999999999999999998664 8999999999876 4554

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-47  Score=325.97  Aligned_cols=196  Identities=24%  Similarity=0.365  Sum_probs=167.3

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCch-hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSGI-FHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~-~~~   82 (229)
                      ++++++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|+     +|+|+++|+++..... ...
T Consensus         3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~   82 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN   82 (251)
T ss_pred             ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence            4799999999999888999999999999999999999999999999999999997     6999999998753211 123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ++..++|++|++.+++. |+.||+.+.......      .....++++.+++.    +..++++.+|||||||||+||||
T Consensus        83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lara  161 (251)
T PRK14249         83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARV  161 (251)
T ss_pred             hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            45679999999988875 999999875432211      12234566777764    45789999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.+++.+++ ++.|||++||+++++.+++|
T Consensus       162 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~~~~~~~d  214 (251)
T PRK14249        162 LAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQQAARASD  214 (251)
T ss_pred             HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhCC
Confidence            999999999999999999999999999999985 58999999999999998764

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-47  Score=326.23  Aligned_cols=197  Identities=25%  Similarity=0.334  Sum_probs=168.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-hhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-FHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~~~~   83 (229)
                      .++++|++++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++  |   ++|+|+++|+++..... ....
T Consensus         4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   83 (252)
T PRK14256          4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI   83 (252)
T ss_pred             EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence            6899999999998899999999999999999999999999999999999986  4   68999999998853211 1234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++..|+.||+.+......  .    ...+.++++.+++..    ..++.+.+||||||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral  163 (252)
T PRK14256         84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI  163 (252)
T ss_pred             hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence            5679999999999998999999976432211  1    123456788888853    45788999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      +.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|.
T Consensus       164 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~  216 (252)
T PRK14256        164 AVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQQAARVSDY  216 (252)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHHHHHhhCCE
Confidence            999999999999999999999999999999865 58999999999999887763

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-47  Score=328.88  Aligned_cols=198  Identities=26%  Similarity=0.327  Sum_probs=168.7

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~   80 (229)
                      +.++|+++||+++|+++++|+|+||+|.+||+++|+||||||||||+++|+|+++     |++|+|.++|+++..... .
T Consensus        17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~   96 (267)
T PRK14237         17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV   96 (267)
T ss_pred             CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence            3468999999999998999999999999999999999999999999999999986     589999999998853211 1


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      ...+..++|++|++.+++ .|+.||+.+.....+.      ...+.++++.+++.    +..++++.+|||||+||++||
T Consensus        97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la  175 (267)
T PRK14237         97 YEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA  175 (267)
T ss_pred             HHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence            234567999999988877 5999999875332211      12345668888884    457889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~~~~~~d  230 (267)
T PRK14237        176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQQAARASD  230 (267)
T ss_pred             HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhcC
Confidence            999999999999999999999999999999999854 7899999999999988775

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=7.6e-48  Score=326.25  Aligned_cols=187  Identities=24%  Similarity=0.363  Sum_probs=160.4

Q ss_pred             EeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee-cccccC
Q 027067           19 MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS-LKDAVK   97 (229)
Q Consensus        19 ~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~   97 (229)
                      .|+.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....  ..++..++|++ +.+.++
T Consensus        30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~--~~~~~~i~~~~~~~~~~~  107 (236)
T cd03267          30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR--KKFLRRIGVVFGQKTQLW  107 (236)
T ss_pred             ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc--hhhcccEEEEcCCccccC
Confidence            455578999999999999999999999999999999999999999999999998764321  23455789987 556778


Q ss_pred             CCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           98 EKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      +.+|+.||+.+.......     ...+.++++.+++.+..++++.+||||||||++|||||+.+|++|||||||++||+.
T Consensus       108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~  187 (236)
T cd03267         108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVV  187 (236)
T ss_pred             CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHH
Confidence            889999999775433221     123456788899988889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          173 GVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      +++.+.+++.+++++ +.|||++||+++++.+++|.
T Consensus       188 ~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~  223 (236)
T cd03267         188 AQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARR  223 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCE
Confidence            999999999998654 78999999999999887763

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=6.3e-48  Score=358.61  Aligned_cols=197  Identities=20%  Similarity=0.298  Sum_probs=171.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      +|+++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|  ++|+|+++|+++.........+..+
T Consensus         1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (500)
T TIGR02633         1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI   80 (500)
T ss_pred             CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence            48999999999988999999999999999999999999999999999999987  7999999999986543222234579


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhc------C---ccccHHHHHHHhCCChhh-cCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLE------G---KQGNSLPALELMGLGRLA-KEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~------~---~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +|++|++.+++.+|+.||+.+.....      .   ...++.++++.+++.+.. ++++.+|||||||||+|||||+.+|
T Consensus        81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p  160 (500)
T TIGR02633        81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA  160 (500)
T ss_pred             EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence            99999998999999999998653211      0   112356789999997654 6789999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++++++++|.|||++|||++++...+|
T Consensus       161 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d  209 (500)
T TIGR02633       161 RLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCD  209 (500)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCC
Confidence            9999999999999999999999999998889999999999999988764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.8e-47  Score=329.73  Aligned_cols=198  Identities=24%  Similarity=0.338  Sum_probs=170.0

Q ss_pred             CcEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067            9 PRLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~   79 (229)
                      ++|+++||+++|+         ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....
T Consensus         2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~   81 (268)
T PRK10419          2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR   81 (268)
T ss_pred             ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence            3799999999997         4789999999999999999999999999999999999999999999999998765322


Q ss_pred             h--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHh-cC-----ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067           80 F--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL-EG-----KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        80 ~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~-~~-----~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~  148 (229)
                      .  ...+..++|++|++  .+++..|+.+|+.+.... ..     ....+.++++.+++. ...++++.+||||||||++
T Consensus        82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~  161 (268)
T PRK10419         82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC  161 (268)
T ss_pred             hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence            1  12456799999987  466778999998653221 11     112456789999996 5789999999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|++|||||||++||+.+++.+.+++++++++ +.|+|++||+++++.+++|
T Consensus       162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d  220 (268)
T PRK10419        162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ  220 (268)
T ss_pred             HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence            999999999999999999999999999999999998764 8999999999999988765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-47  Score=325.83  Aligned_cols=196  Identities=24%  Similarity=0.366  Sum_probs=167.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~~   82 (229)
                      ++|+++||+++|+++++++++||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++..... ...
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~   81 (250)
T PRK14262          2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE   81 (250)
T ss_pred             ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence            379999999999988999999999999999999999999999999999999874     89999999998754211 123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++ .|++||+.+.......      ...+.++++.+++.+    ..++++.+||||||||++||||
T Consensus        82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~a  160 (250)
T PRK14262         82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARA  160 (250)
T ss_pred             hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHH
Confidence            4567999999988887 7999999875432211      122456788888853    4788999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.++..+.+++.++++ +.|||++||+++++...+|
T Consensus       161 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~~~~~~~d  213 (250)
T PRK14262        161 LAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIGQAIRIAD  213 (250)
T ss_pred             HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999999999865 7899999999999888765

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-47  Score=329.83  Aligned_cols=199  Identities=24%  Similarity=0.302  Sum_probs=167.9

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-h
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-F   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~   80 (229)
                      ..++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|.++|+++..... .
T Consensus        17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~   96 (274)
T PRK14265         17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS   96 (274)
T ss_pred             CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence            44689999999999988999999999999999999999999999999999999863     68999999998753211 1


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ..++..++|++|++.+++. |+.||+.+......    ......++++.+++.    +..++++.+|||||||||+||||
T Consensus        97 ~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAra  175 (274)
T PRK14265         97 VKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARA  175 (274)
T ss_pred             HHHhhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHH
Confidence            2345689999999888765 99999987532211    112234567777763    45688999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus       176 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~~~~~~~d~  229 (274)
T PRK14265        176 IAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQQASRVADW  229 (274)
T ss_pred             HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence            9999999999999999999999999999999865 68999999999999988763

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-47  Score=311.69  Aligned_cols=168  Identities=22%  Similarity=0.368  Sum_probs=151.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++|++++|    +++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++
T Consensus         3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~   78 (182)
T cd03215           3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA   78 (182)
T ss_pred             cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence            479999999999    8999999999999999999999999999999999999999999999998865432223456799


Q ss_pred             Eeeccc---ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           89 WLSLKD---AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        89 ~~~~~~---~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      |++|++   .+++..|+.||+.+...                           ||+|||||++||||++.+|++||||||
T Consensus        79 ~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDEP  131 (182)
T cd03215          79 YVPEDRKREGLVLDLSVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDEP  131 (182)
T ss_pred             EecCCcccCcccCCCcHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECCC
Confidence            999984   57788899999876421                           999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |++||+.+++.+.+++.++++++.|+|++||+++++.+.+|.
T Consensus       132 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~  173 (182)
T cd03215         132 TRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDR  173 (182)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence            999999999999999999877789999999999999887763

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.5e-48  Score=332.10  Aligned_cols=194  Identities=25%  Similarity=0.341  Sum_probs=164.8

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...    .....++
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~----~~~~~i~   81 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA----LQKNLVA   81 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh----hccceEE
Confidence            699999999995 57899999999999999999999999999999999999999999999999987421    1123589


Q ss_pred             EeecccccC--CCCCHHHhHHHHHH----h-c--C--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVK--EKFTVLDNVQWFEV----L-E--G--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~--~~~tv~e~l~~~~~----~-~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+.  ...++.+++.+...    . .  .  ....+.++++.+++.+..++++.+||||||||++|||||+.+|
T Consensus        82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p  161 (272)
T PRK15056         82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQG  161 (272)
T ss_pred             EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            999987652  23467787653210    0 0  0  1123457789999998899999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ++|||||||++||+.+++.+.+++.+++++|.|||++||+++++.+++|.
T Consensus       162 ~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~  211 (272)
T PRK15056        162 QVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDY  211 (272)
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            99999999999999999999999999887789999999999999888764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-47  Score=331.49  Aligned_cols=198  Identities=28%  Similarity=0.340  Sum_probs=167.7

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IF   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~   80 (229)
                      ..++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|.++|+++.... ..
T Consensus        36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~  115 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE  115 (286)
T ss_pred             CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence            3467999999999988889999999999999999999999999999999999864     49999999999875321 11


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      ...+..++|++|++.+++. |+.||+.+.......      .....++++.+++.    +..++++.+|||||||||+||
T Consensus       116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA  194 (286)
T PRK14275        116 VLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVA  194 (286)
T ss_pred             HHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHH
Confidence            2345679999999888875 999999875432211      12344677788873    567889999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.++++++++ +.|||++||+++++.+++|
T Consensus       195 raL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~~~~~~~d  249 (286)
T PRK14275        195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQQASRVSD  249 (286)
T ss_pred             HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999865 6899999999999988775

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=1.9e-47  Score=321.51  Aligned_cols=194  Identities=24%  Similarity=0.383  Sum_probs=169.5

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhhh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~~   82 (229)
                      .++++||+++|++    +++++|+||+|++||+++|+||||||||||+|+|+|+++   |++|+|+++|+++..    ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~----~~   78 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP----DQ   78 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh----HH
Confidence            5789999999964    589999999999999999999999999999999999999   999999999998752    23


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcC----cc----ccHHH-HHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQ----GNSLP-ALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~----~~~~~-~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ++..++|++|++.+++.+|+.||+.+......    ..    ....+ .++.+++.+..++.+.+|||||+|||+|||||
T Consensus        79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral  158 (226)
T cd03234          79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL  158 (226)
T ss_pred             hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHH
Confidence            45679999999999999999999987543211    11    11233 78888998888999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh-hhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP-IQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~-~~~~~~~~~  207 (229)
                      +.+|+++||||||++||+.++..+.+++.++++++.|+|++||++ +++.+++|.
T Consensus       159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~  213 (226)
T cd03234         159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDR  213 (226)
T ss_pred             HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCE
Confidence            999999999999999999999999999999877789999999998 588888773

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-47  Score=327.63  Aligned_cols=197  Identities=26%  Similarity=0.329  Sum_probs=168.7

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~   81 (229)
                      .++++++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++     |++|+|+++|.++..... ..
T Consensus        23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~  102 (272)
T PRK14236         23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA  102 (272)
T ss_pred             CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence            468999999999998899999999999999999999999999999999999987     489999999998854211 12


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      ..+..++|++|++.+++. |+.||+.+.....+.      ...+.++++.+++.    +..++++.+|||||||||+|||
T Consensus       103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar  181 (272)
T PRK14236        103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIAR  181 (272)
T ss_pred             HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHH
Confidence            345679999999888876 999999865332211      12345677888885    3568899999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+|+++||||||+|||+.++..+.+++.++++ +.|||++||+++++.+++|
T Consensus       182 al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~~~~~~d  235 (272)
T PRK14236        182 AIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQQAARVSD  235 (272)
T ss_pred             HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHHHHHhhCC
Confidence            99999999999999999999999999999999875 7899999999999888765

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=1.4e-47  Score=327.67  Aligned_cols=184  Identities=29%  Similarity=0.424  Sum_probs=162.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.            ..++
T Consensus         3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------------~~i~   70 (251)
T PRK09544          3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIG   70 (251)
T ss_pred             cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------------cCEE
Confidence            4899999999999889999999999999999999999999999999999999999999999761            2478


Q ss_pred             EeecccccCCCC--CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           89 WLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        89 ~~~~~~~~~~~~--tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      |++|++.+++.+  ++.+++.+..  .....++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        71 ~v~q~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  148 (251)
T PRK09544         71 YVPQKLYLDTTLPLTVNRFLRLRP--GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPT  148 (251)
T ss_pred             EeccccccccccChhHHHHHhccc--cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            999987776653  6777654321  112234677899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||+.+++.+.+++.+++++ |.|||++||+++++.+.+|
T Consensus       149 ~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d  189 (251)
T PRK09544        149 QGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD  189 (251)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence            999999999999999998765 8999999999999988765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.4e-47  Score=328.74  Aligned_cols=197  Identities=26%  Similarity=0.319  Sum_probs=168.6

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~   82 (229)
                      .++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++........
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   98 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE   98 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence            4689999999999999999999999999999999999999999999999999986     69999999998764321123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++ .|+++|+.+......  ..    ....++++.+++..    ..++.+.+|||||+||++||||
T Consensus        99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra  177 (276)
T PRK14271         99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART  177 (276)
T ss_pred             HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence            4567999999988887 799999986532211  11    12345678888863    4678899999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~~~~~~~d  230 (276)
T PRK14271        178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLAQAARISD  230 (276)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999999999865 5899999999999988775

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-47  Score=324.18  Aligned_cols=195  Identities=25%  Similarity=0.325  Sum_probs=166.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCchhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +++++|++++|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|     ++|+|+++|.++.........+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~   82 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR   82 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence            69999999999988999999999999999999999999999999999999986     5999999999874211112345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      ..++|++|++.+++ .|+.||+.+.......      ...+.++++.+++.    +..++++.+|||||||||+|||||+
T Consensus        83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~  161 (249)
T PRK14253         83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA  161 (249)
T ss_pred             hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence            67999999988887 7999999865332211      12234567777774    4567899999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       162 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~~~d  212 (249)
T PRK14253        162 MEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQQARRISD  212 (249)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCC
Confidence            99999999999999999999999999999865 5899999999999998775

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.9e-48  Score=346.72  Aligned_cols=191  Identities=28%  Similarity=0.320  Sum_probs=164.4

Q ss_pred             EEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE----eCCCCchh--hhh-hhcce
Q 027067           16 VSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH----DITQSGIF--HQY-KLQLN   88 (229)
Q Consensus        16 l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~----~~~~~~~~--~~~-~~~~~   88 (229)
                      +.++|+...+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|+++|+    ++......  ... +.+++
T Consensus        30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~  109 (382)
T TIGR03415        30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS  109 (382)
T ss_pred             HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence            344566778999999999999999999999999999999999999999999999997    34332211  112 25799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+|+.||+.+.....+.     ...+.++++.+|+.+..++++.+|||||||||+|||||+.+|++||||
T Consensus       110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD  189 (382)
T TIGR03415       110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD  189 (382)
T ss_pred             EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            999999999999999999886533221     234567899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+..+..+.+.+.+++++ ++|||++|||++++.+++|
T Consensus       190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~D  233 (382)
T TIGR03415       190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGN  233 (382)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999998764 8999999999999988764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-48  Score=357.66  Aligned_cols=194  Identities=22%  Similarity=0.308  Sum_probs=170.5

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      ++|++++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++|++|
T Consensus         1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q   80 (491)
T PRK10982          1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ   80 (491)
T ss_pred             CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence            47899999988999999999999999999999999999999999999999999999999998644322334557999999


Q ss_pred             ccccCCCCCHHHhHHHHHH-hcC-------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           93 KDAVKEKFTVLDNVQWFEV-LEG-------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~-~~~-------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++.+++.+||.||+.+... ...       ...++.++++.+++....++++.+|||||||||+|||||+.+|++|||||
T Consensus        81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE  160 (491)
T PRK10982         81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE  160 (491)
T ss_pred             ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence            9888899999999976421 111       01235678899999888899999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.+++.+.+++.+++++|.|||++|||++++...+|
T Consensus       161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d  202 (491)
T PRK10982        161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCD  202 (491)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence            999999999999999999998789999999999999988764

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-47  Score=323.91  Aligned_cols=196  Identities=29%  Similarity=0.361  Sum_probs=165.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCch-hhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSGI-FHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~~-~~~~   83 (229)
                      +++++||+++|+++++++|+||+|++||+++|+||||||||||+|+|+|+++|+     +|+|+++|+++..... ...+
T Consensus         4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~   83 (252)
T PRK14272          4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM   83 (252)
T ss_pred             EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence            799999999999889999999999999999999999999999999999999874     8999999998753211 1234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++.+|+.||+.+......  ..    +.+.++++.+++.    +..++++.+||||||||++|||||
T Consensus        84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral  163 (252)
T PRK14272         84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL  163 (252)
T ss_pred             hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence            5679999999999998999999986533221  11    1223345556553    456889999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.++++++++ ++|||++||+++++.+.+|
T Consensus       164 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~~~d  215 (252)
T PRK14272        164 AVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMHQAARVSD  215 (252)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999864 7999999999999998775

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=8.7e-49  Score=313.16  Aligned_cols=199  Identities=28%  Similarity=0.369  Sum_probs=176.2

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC----------
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS----------   77 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----------   77 (229)
                      .+.|+++|+.|+||...+|++||++.++|+++.|+|.|||||||+||||+=+.+|++|.|.++|+.+.-.          
T Consensus         4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a   83 (256)
T COG4598           4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA   83 (256)
T ss_pred             ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence            3579999999999999999999999999999999999999999999999999999999999999886421          


Q ss_pred             --chhhhhhhcceEeecccccCCCCCHHHhHHHHHH--hcC----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH
Q 027067           78 --GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV--LEG----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~--~~~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l  149 (229)
                        ...++.+.+.++++|+.+++..+||.||+.-...  +..    ..++++.+|.++|+.+..+.+|..|||||+||++|
T Consensus        84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aI  163 (256)
T COG4598          84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAI  163 (256)
T ss_pred             CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHH
Confidence              1123456788999999999999999999864321  111    12346678999999999999999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+++|+++++|||||+|||+-.-++.+.++++.++|+|.++|||.+.++.+..+
T Consensus       164 ARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss  220 (256)
T COG4598         164 ARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSS  220 (256)
T ss_pred             HHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhh
Confidence            999999999999999999999999999999999999999999999999999888653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.6e-47  Score=325.51  Aligned_cols=197  Identities=24%  Similarity=0.307  Sum_probs=168.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc-hhhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG-IFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~-~~~~   82 (229)
                      ++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++|     ++|+|+++|+++.... ....
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   85 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR   85 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence            579999999999988999999999999999999999999999999999999985     4899999999875321 1123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++ .|+.||+.+......  .    ...+.++++.+++.    +..++++.+|||||||||+||||
T Consensus        86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  164 (259)
T PRK14260         86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARA  164 (259)
T ss_pred             hhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence            4567999999988887 899999976532211  1    12345678888873    46788999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus       165 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~~i~~~~d~  218 (259)
T PRK14260        165 LAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQQATRVSDF  218 (259)
T ss_pred             HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCe
Confidence            9999999999999999999999999999999865 68999999999999988763

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-47  Score=327.31  Aligned_cols=197  Identities=22%  Similarity=0.280  Sum_probs=166.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~   82 (229)
                      ++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+|+|+|+++     |++|+|+++|+++.... ....
T Consensus         9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~   88 (264)
T PRK14243          9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE   88 (264)
T ss_pred             eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence            58999999999998899999999999999999999999999999999999986     48999999999874211 1123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      ++..++|++|++.+++ .|+.||+.+......    ....+.++++.+++.    +..++++.+||||||||++|||||+
T Consensus        89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~  167 (264)
T PRK14243         89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIA  167 (264)
T ss_pred             HhhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHh
Confidence            4567999999988877 499999987543211    112234567777774    3567899999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      .+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|.
T Consensus       168 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~~~~~~~d~  219 (264)
T PRK14243        168 VQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQQAARVSDM  219 (264)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCE
Confidence            99999999999999999999999999999865 58999999999999988763

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=4.1e-47  Score=324.97  Aligned_cols=193  Identities=21%  Similarity=0.262  Sum_probs=165.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchhhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      +|+++||+++| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|    ++|+|+++|+++...   ...+.
T Consensus         4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~---~~~~~   79 (254)
T PRK10418          4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC---ALRGR   79 (254)
T ss_pred             EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc---ccccc
Confidence            79999999999 67899999999999999999999999999999999999999    999999999987532   11235


Q ss_pred             cceEeecccc--cCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh---hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           86 QLNWLSLKDA--VKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR---LAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        86 ~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      .++|++|++.  +.+..|+.+++.+......   ....+.++++.+++.+   ..++++.+|||||||||+|||||+.+|
T Consensus        80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p  159 (254)
T PRK10418         80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEA  159 (254)
T ss_pred             eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCC
Confidence            6899999874  4456788888765432211   1234567899999976   578999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.++++++.++ |.|||++||+++++.+++|
T Consensus       160 ~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d  209 (254)
T PRK10418        160 PFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLAD  209 (254)
T ss_pred             CEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCC
Confidence            999999999999999999999999998654 8999999999999988765

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.2e-47  Score=322.37  Aligned_cols=196  Identities=23%  Similarity=0.351  Sum_probs=166.1

Q ss_pred             CCCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhh
Q 027067            7 PLPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY   83 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~   83 (229)
                      ..++++++|++++|++   +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus         8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~   86 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH-KYL   86 (226)
T ss_pred             cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH-HHH
Confidence            4578999999999975   469999999999999999999999999999999999999999999999988754322 234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcC--------ccccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--------KQGNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--------~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++ .|+.||+.+......        ......++++.+  |+....++++.+|||||||||+|||||
T Consensus        87 ~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral  165 (226)
T cd03248          87 HSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARAL  165 (226)
T ss_pred             HhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHH
Confidence            567999999988776 599999975321110        011234567777  788788999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ +.|+|++||++++++. +|
T Consensus       166 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d  216 (226)
T cd03248         166 IRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLSTVER-AD  216 (226)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHHHHh-CC
Confidence            999999999999999999999999999999865 6899999999999864 55

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=1.4e-47  Score=323.45  Aligned_cols=191  Identities=29%  Similarity=0.426  Sum_probs=160.8

Q ss_pred             EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++|++++|+++  ++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~   79 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL-ASLRRQIG   79 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH-HHHHhhEE
Confidence            4789999999765  89999999999999999999999999999999999999999999999998754322 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccc---------cHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQG---------NSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~---------~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++ .|++||+.++.... ...         ...++++.+  ++....++++.+||+|||||++|||||+.+|
T Consensus        80 ~~~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  157 (234)
T cd03251          80 LVSQDVFLFN-DTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDP  157 (234)
T ss_pred             EeCCCCeecc-ccHHHHhhccCCCC-CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCC
Confidence            9999988876 69999997642211 111         122344444  5666677889999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++||||||++||+.+++.+.+.+.++++ +.|||++||+++++.. +|
T Consensus       158 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d  204 (234)
T cd03251         158 PILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLSTIEN-AD  204 (234)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHhh-CC
Confidence            99999999999999999999999999864 8899999999999876 55

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.9e-48  Score=358.12  Aligned_cols=197  Identities=19%  Similarity=0.333  Sum_probs=169.7

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++|+++.|+  .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..+
T Consensus       263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i  340 (510)
T PRK09700        263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM  340 (510)
T ss_pred             CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence            35899999998764  4899999999999999999999999999999999999999999999999885433222334579


Q ss_pred             eEeecc---cccCCCCCHHHhHHHHHHhc-----------C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067           88 NWLSLK---DAVKEKFTVLDNVQWFEVLE-----------G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        88 ~~~~~~---~~~~~~~tv~e~l~~~~~~~-----------~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l  149 (229)
                      +|++|+   ..+++.+|+.||+.+.....           .   ....+.++++.+++. +..++++.+|||||||||+|
T Consensus       341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~l  420 (510)
T PRK09700        341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLI  420 (510)
T ss_pred             EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHH
Confidence            999997   46888899999987642110           0   012346789999996 77899999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+.+|++|||||||++||+.+++.+.+++++++++|.|||++|||++++...+|
T Consensus       421 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d  477 (510)
T PRK09700        421 SKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD  477 (510)
T ss_pred             HHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence            999999999999999999999999999999999988789999999999999998775

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.5e-47  Score=322.26  Aligned_cols=197  Identities=25%  Similarity=0.336  Sum_probs=165.9

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~~-~~   81 (229)
                      .++++++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+  |   ++|+|+++|+++..... ..
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (252)
T PRK14255          3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV   82 (252)
T ss_pred             cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence            358999999999998899999999999999999999999999999999999975  5   58999999998753111 12


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      .++..++|++|++.+++ .|+.+|+.+......  .    .....+.++.+++.    +..++.+.+||+||||||+|||
T Consensus        83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar  161 (252)
T PRK14255         83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR  161 (252)
T ss_pred             HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence            34567999999988887 699999987543221  1    11234556777763    4568899999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d  215 (252)
T PRK14255        162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMHQASRISD  215 (252)
T ss_pred             HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHHHHHHhCC
Confidence            99999999999999999999999999999999865 5899999999999988775

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-47  Score=324.60  Aligned_cols=199  Identities=26%  Similarity=0.346  Sum_probs=169.1

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEEcCEeCCCCc-hhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-----AGEILWNGHDITQSG-IFH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-----~G~I~~~g~~~~~~~-~~~   81 (229)
                      .++|+++|++++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+     +|+|.++|+++.... ...
T Consensus         5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~   84 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN   84 (261)
T ss_pred             cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence            35799999999998888999999999999999999999999999999999999985     899999999874221 112


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC--c----cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--K----QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~----~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAr  151 (229)
                      .++..++|++|++.+++ .|+.||+.+......  .    ...+.++++.+++.    +..++++.+|||||+||++|||
T Consensus        85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar  163 (261)
T PRK14258         85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR  163 (261)
T ss_pred             HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence            34567999999988887 899999986532211  1    12345678888874    3568899999999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          152 LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||+.+|++|||||||++||+.+++.+.+++.++++ ++.|||++||+++++.+++|.
T Consensus       164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~  220 (261)
T PRK14258        164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDF  220 (261)
T ss_pred             HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCE
Confidence            99999999999999999999999999999999764 489999999999999988764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=3.8e-47  Score=323.38  Aligned_cols=197  Identities=20%  Similarity=0.253  Sum_probs=162.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      +|+++||++.|+++++|+|+||+|++|++++|+||||||||||+++|+|++  +|++|+|+++|+++.........+..+
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i   80 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI   80 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence            589999999999889999999999999999999999999999999999995  699999999998876543222223468


Q ss_pred             eEeecccccCCCCCHHHhHHHHH-Hh---cC--------ccccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHHHHH
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFE-VL---EG--------KQGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLARLL  153 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~-~~---~~--------~~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lAral  153 (229)
                      +|++|++.+++.+++.+++.... ..   ..        ......+.++.+++. +..++.+. +|||||||||+||||+
T Consensus        81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral  160 (248)
T PRK09580         81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA  160 (248)
T ss_pred             EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence            99999988887777666543211 00   00        012234677888884 55677775 8999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-hc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-MN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-~~  206 (229)
                      +.+|++|||||||++||+.+++.+.++++++++.++|||++|||++.+... +|
T Consensus       161 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d  214 (248)
T PRK09580        161 VLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPD  214 (248)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCC
Confidence            999999999999999999999999999999887789999999999988875 44

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-47  Score=360.16  Aligned_cols=199  Identities=24%  Similarity=0.285  Sum_probs=172.4

Q ss_pred             CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067            8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ   76 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   76 (229)
                      .++|+++||++.|+           .+++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+|+|+++..
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~  390 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT  390 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence            36899999999996           2579999999999999999999999999999999999999999999999998865


Q ss_pred             Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC-hhhcCCCCCCChhHHH
Q 027067           77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG-RLAKEKARMLSMGQRK  145 (229)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq  145 (229)
                      ....  ..++.+++|++|++  .+++.+||.+|+.+.......      ..++.++++.+|+. +..++++++|||||||
T Consensus       391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQ  470 (623)
T PRK10261        391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQ  470 (623)
T ss_pred             CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHH
Confidence            3221  12345799999986  588889999999865322211      13456789999996 6789999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+|||||+.+|++|||||||++||+.++..+.++|++++++ |.|||+||||++++..++|
T Consensus       471 Rv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~d  532 (623)
T PRK10261        471 RICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISH  532 (623)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999999998765 8999999999999988764

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.2e-47  Score=304.14  Aligned_cols=195  Identities=26%  Similarity=0.366  Sum_probs=173.2

Q ss_pred             cEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh---h
Q 027067           10 RLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH---Q   82 (229)
Q Consensus        10 ~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~---~   82 (229)
                      .|+++++++..+    .-.+|++|+|.|++||.++|+|||||||||||-+++|+..|++|+|++.|+++.+.+...   -
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~   85 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL   85 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence            799999998774    357999999999999999999999999999999999999999999999999988754322   1


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      ..++++|++|...+.|++|..||+..+..+.+.     ...+.++|+.+||.+.++.+|.+|||||+|||+|||||+..|
T Consensus        86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P  165 (228)
T COG4181          86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP  165 (228)
T ss_pred             hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence            346799999999999999999999987766541     234678999999999999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~  204 (229)
                      +||+.||||-+||..+-+.+.+++-.+ ++.|.|.|+||||+.....|
T Consensus       166 ~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc  213 (228)
T COG4181         166 DVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARC  213 (228)
T ss_pred             CEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhh
Confidence            999999999999999988888888776 56699999999999877665

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.9e-47  Score=323.18  Aligned_cols=194  Identities=29%  Similarity=0.368  Sum_probs=165.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-hhhhh
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-FHQYK   84 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~~~~~   84 (229)
                      -+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.+     |++|+|+++|+++..... ....+
T Consensus         6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~   85 (251)
T PRK14244          6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR   85 (251)
T ss_pred             EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence            478999999998899999999999999999999999999999999999986     479999999998753211 11245


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCc-------cccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-------QGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-------~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..++|++|++.+++. |+.||+.+.......       ...+.++++.+++.+    ..++.+.+|||||||||+|||||
T Consensus        86 ~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral  164 (251)
T PRK14244         86 AKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAI  164 (251)
T ss_pred             hhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHH
Confidence            679999999888876 999999865322111       123456789999864    46788999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.+++ ++.|||++||+++++.+++|
T Consensus       165 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~~~~~~~d  216 (251)
T PRK14244        165 AVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMKQAKKVSD  216 (251)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHhhcC
Confidence            99999999999999999999999999999985 48999999999999988765

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-47  Score=356.61  Aligned_cols=200  Identities=18%  Similarity=0.232  Sum_probs=171.4

Q ss_pred             CCcEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhh
Q 027067            8 LPRLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQY   83 (229)
Q Consensus         8 ~~~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~   83 (229)
                      .++|+++||+++|+   ++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|+++|+++.........
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~  336 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI  336 (506)
T ss_pred             CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence            45799999999993   4679999999999999999999999999999999999998 5999999999988643322233


Q ss_pred             hhcceEeeccc---ccCCCCCHHHhHHHHH--HhcC--------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067           84 KLQLNWLSLKD---AVKEKFTVLDNVQWFE--VLEG--------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        84 ~~~~~~~~~~~---~~~~~~tv~e~l~~~~--~~~~--------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l  149 (229)
                      +..++|++|++   .+++.+|+.||+.+..  ....        ...++.++++.+++. +..++++.+|||||||||+|
T Consensus       337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~l  416 (506)
T PRK13549        337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVL  416 (506)
T ss_pred             HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHH
Confidence            45799999985   4778899999997642  1110        112356789999996 57899999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||+.+|++|||||||+|||+.+++.+.+++.+++++|+|||++|||++++.+++|.
T Consensus       417 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~  474 (506)
T PRK13549        417 AKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR  474 (506)
T ss_pred             HHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence            9999999999999999999999999999999999988899999999999999988753

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.4e-47  Score=347.85  Aligned_cols=200  Identities=24%  Similarity=0.329  Sum_probs=182.5

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..+.++++|++|+|++.++|++|||++.+||++||+|+||||||||+|+|+|.++|++|+|+++|+.....++.......
T Consensus         5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G   84 (500)
T COG1129           5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG   84 (500)
T ss_pred             ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence            44689999999999999999999999999999999999999999999999999999999999999999877776667789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC---------ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG---------KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |..++|+.++.+++||.||+.++.....         ...++.++|+.+++....+.++.+||.||||.|+||||+..++
T Consensus        85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~a  164 (500)
T COG1129          85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDA  164 (500)
T ss_pred             cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999976543221         1234667889999854489999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||||||||+|+....+.+.+++++++++|.+||+|||.++++.+.+|
T Consensus       165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~D  213 (500)
T COG1129         165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIAD  213 (500)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999884

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=2.5e-47  Score=322.68  Aligned_cols=191  Identities=23%  Similarity=0.366  Sum_probs=158.3

Q ss_pred             EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++|++++|++  +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~~i~   79 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP-AWLRRQVG   79 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH-HHHhhcEE
Confidence            478999999963  679999999999999999999999999999999999999999999999998754332 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccH---------HHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---------LPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++ .|+.||+.+.... ......         .++++.+  ++....++++.+|||||||||+|||||+.+|
T Consensus        80 ~~~q~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p  157 (237)
T cd03252          80 VVLQENVLFN-RSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNP  157 (237)
T ss_pred             EEcCCchhcc-chHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCC
Confidence            9999988765 6999999763211 011111         2233333  4555567889999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++.++++ |.|||++||+++++.. +|
T Consensus       158 ~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~~~~-~d  204 (237)
T cd03252         158 RILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLSTVKN-AD  204 (237)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHh-CC
Confidence            99999999999999999999999999864 8999999999999864 54

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6.7e-48  Score=330.43  Aligned_cols=196  Identities=29%  Similarity=0.342  Sum_probs=171.9

Q ss_pred             cEEEEeEEEEeCCe------------------------eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067           10 RLLLKNVSCMRNAQ------------------------QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus        10 ~l~l~~l~~~~~~~------------------------~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      .++++||+|-||.+                        .-++|+||+|+.|||+.|+|-||||||||+|+++++++|++|
T Consensus         4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G   83 (386)
T COG4175           4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG   83 (386)
T ss_pred             eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence            58999999988632                        257999999999999999999999999999999999999999


Q ss_pred             EEEEcCEeCCCCchh---hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCC
Q 027067           66 EILWNGHDITQSGIF---HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKAR  137 (229)
Q Consensus        66 ~I~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~  137 (229)
                      +|.++|+++...+..   .-.++++++++|+..++|+.||.||..|+....+.     ++++.++++.+||..+.+++|+
T Consensus        84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~  163 (386)
T COG4175          84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN  163 (386)
T ss_pred             eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence            999999998775532   22456799999999999999999999998765442     3456789999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067          138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       138 ~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~  205 (229)
                      +|||||||||.|||||+.+|+|||||||||+|||--+..+.+-+.++.+ -++|||+||||++++-.+.
T Consensus       164 eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG  232 (386)
T COG4175         164 ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG  232 (386)
T ss_pred             cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence            9999999999999999999999999999999999888777776666644 4889999999999987764

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-46  Score=321.78  Aligned_cols=196  Identities=29%  Similarity=0.372  Sum_probs=166.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEEcCEeCCCCc-hhhh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--P---SAGEILWNGHDITQSG-IFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p---~~G~I~~~g~~~~~~~-~~~~   82 (229)
                      ++|+++|++++|+++.+|+|+||+|++||+++|+||||||||||+++|+|+.+  |   ++|+|.++|+++...+ ....
T Consensus         5 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~   84 (253)
T PRK14261          5 IILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA   84 (253)
T ss_pred             ceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence            48999999999999999999999999999999999999999999999999976  3   4899999999886431 1123


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      .+..++|++|++.+++. |++||+.+.......      ...+.++++.+++.    +..++.+.+||+|||||++||||
T Consensus        85 ~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lara  163 (253)
T PRK14261         85 LRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIART  163 (253)
T ss_pred             hhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHH
Confidence            45679999999988875 999999875433211      12344567777774    34688999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++.+|+++||||||+|||+.+++.+.+++.++++ +.|||++||+++++.+.+|
T Consensus       164 l~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~~~~~~~d  216 (253)
T PRK14261        164 LAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQQAARVSD  216 (253)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHHHHHhhCC
Confidence            9999999999999999999999999999999865 5899999999999988765

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=2.3e-47  Score=321.18  Aligned_cols=192  Identities=23%  Similarity=0.393  Sum_probs=159.6

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .|+++|++++|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...+..++
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~   80 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR-KSLRSMIG   80 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCH-HHHhhhEE
Confidence            4789999999975 579999999999999999999999999999999999999999999999998754321 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-----------CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----------GLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++. |+.||+.++.... ...+..++++.+           ++....++++.+|||||||||+|||||+.+|
T Consensus        81 ~~~q~~~~~~~-tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p  158 (229)
T cd03254          81 VVLQDTFLFSG-TIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP  158 (229)
T ss_pred             EecCCchhhhh-HHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence            99999888775 9999997642211 112233334444           3444456678999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++..++ ++.|||++||+++++.. +|
T Consensus       159 ~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~-~d  205 (229)
T cd03254         159 KILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKN-AD  205 (229)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhh-CC
Confidence            9999999999999999999999999985 48999999999998864 54

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=3.8e-47  Score=309.52  Aligned_cols=166  Identities=34%  Similarity=0.499  Sum_probs=147.8

Q ss_pred             EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067           12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS   91 (229)
Q Consensus        12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~   91 (229)
                      +++||+++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|++
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~-~~~~~~i~~~~   79 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP-KELARKIAYVP   79 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH-HHHHHHHhHHH
Confidence            47899999998889999999999999999999999999999999999999999999999998864332 12333455555


Q ss_pred             cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067           92 LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY  171 (229)
Q Consensus        92 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~  171 (229)
                      |                             +++.+++.+..++++.+||+|||||++|||||+.+|+++||||||++||+
T Consensus        80 q-----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~  130 (180)
T cd03214          80 Q-----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI  130 (180)
T ss_pred             H-----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence            4                             67788888888899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          172 DGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       172 ~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      .+++.+.+++.+++++ +.|+|++||+++++.+.+|.
T Consensus       131 ~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~  167 (180)
T cd03214         131 AHQIELLELLRRLARERGKTVVMVLHDLNLAARYADR  167 (180)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            9999999999998776 88999999999999887763

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-47  Score=308.82  Aligned_cols=190  Identities=29%  Similarity=0.394  Sum_probs=171.1

Q ss_pred             CcEEEEeEEEEeCCee--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNAQQ--ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~--iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +++.+++++.+|++++  +|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|+.++..+.      .
T Consensus         2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga------e   75 (259)
T COG4525           2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA------E   75 (259)
T ss_pred             ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc------c
Confidence            3688999999998877  9999999999999999999999999999999999999999999999999986432      2


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      -+.++|++.++|.+++.||+.|+..+.+..     +.+.+.+..+||.+..++++-+|||||||||.|||||+.+|++|+
T Consensus        76 rgvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~Ll  155 (259)
T COG4525          76 RGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLL  155 (259)
T ss_pred             ceeEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEe
Confidence            478999999999999999999988776532     235577899999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCChhhHHhh
Q 027067          162 LDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~-~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ||||+++||.-+++.+.+++-+ +++.|+.+++||||+++.--.
T Consensus       156 LDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlfl  199 (259)
T COG4525         156 LDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFL  199 (259)
T ss_pred             ecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhh
Confidence            9999999999999999987776 577899999999998876554

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-46  Score=322.48  Aligned_cols=200  Identities=24%  Similarity=0.343  Sum_probs=169.8

Q ss_pred             CCCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC------EeCCCCch
Q 027067            6 PPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG------HDITQSGI   79 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g------~~~~~~~~   79 (229)
                      ...|+++++|++++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|      .++.....
T Consensus         6 ~~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~   85 (257)
T PRK14246          6 SAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA   85 (257)
T ss_pred             hhhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence            456899999999999999999999999999999999999999999999999999999997777666      34432221


Q ss_pred             hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC--cc----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG--KQ----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--~~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~l  149 (229)
                       ...+..++|++|++.+++.+|++||+.+......  ..    ..+.++++.+++.    +..++.+..||+|||||++|
T Consensus        86 -~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l  164 (257)
T PRK14246         86 -IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI  164 (257)
T ss_pred             -HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence             2345679999999999988999999987543211  11    2345678888985    45688999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++..+++.
T Consensus       165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~~~~~~~d~  221 (257)
T PRK14246        165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQQVARVADY  221 (257)
T ss_pred             HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHHHHHHhCCE
Confidence            9999999999999999999999999999999998864 68999999999999887753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.5e-47  Score=359.62  Aligned_cols=200  Identities=20%  Similarity=0.216  Sum_probs=169.1

Q ss_pred             CCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC------
Q 027067            7 PLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ------   76 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~------   76 (229)
                      ..++|+++||++.|+    ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|..+..      
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~   88 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI   88 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence            346899999999996    3579999999999999999999999999999999999999999999999875421      


Q ss_pred             ----Cchh--hhh-hhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCC---hhhcCCCCC
Q 027067           77 ----SGIF--HQY-KLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLG---RLAKEKARM  138 (229)
Q Consensus        77 ----~~~~--~~~-~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~---~~~~~~~~~  138 (229)
                          ....  ... ...++|++|++  .+++.+||.||+.+..... .     ...++.++++.+|+.   ...++++++
T Consensus        89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~  168 (623)
T PRK10261         89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ  168 (623)
T ss_pred             ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCcc
Confidence                1111  112 23699999987  6788899999998754321 1     113456789999995   357999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       139 LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |+|||+||||++++...+|
T Consensus       169 LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad  237 (623)
T PRK10261        169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD  237 (623)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999998754 8999999999999988763

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2e-46  Score=328.85  Aligned_cols=199  Identities=27%  Similarity=0.341  Sum_probs=169.0

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-h
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-F   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-~   80 (229)
                      ..++|+++||+++|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++     |++|+|+++|.++..... .
T Consensus        42 ~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~  121 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL  121 (305)
T ss_pred             CCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence            3457999999999998999999999999999999999999999999999999986     689999999998754211 1


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcC------------------ccccHHHHHHHhCCC----hhhcCCCCC
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------------------KQGNSLPALELMGLG----RLAKEKARM  138 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------------------~~~~~~~~l~~~~l~----~~~~~~~~~  138 (229)
                      ...+..++|++|++.+++. |++||+.+......                  ....+.++++.+++.    +..++++.+
T Consensus       122 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  200 (305)
T PRK14264        122 VELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG  200 (305)
T ss_pred             HHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCcccc
Confidence            2345679999999887774 99999986532110                  012245677888874    456889999


Q ss_pred             CChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       139 LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||||||+|||||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++.+.+++|.
T Consensus       201 LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~~i~~~~d~  268 (305)
T PRK14264        201 LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQQAARISDQ  268 (305)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHHHHHHhcCE
Confidence            999999999999999999999999999999999999999999999876 48999999999999988874

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=3.8e-47  Score=319.71  Aligned_cols=183  Identities=26%  Similarity=0.296  Sum_probs=158.9

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      +.++|++++|+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...      ..     
T Consensus        23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------~~-----   91 (224)
T cd03220          23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL------GL-----   91 (224)
T ss_pred             hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh------cc-----
Confidence            7889999999999999999999999999999999999999999999999999999999999875311      00     


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                        ...+.+.+|+.||+.+.......     .....++++.+++.+..++++.+||||||||++||||++.+|+++|||||
T Consensus        92 --~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP  169 (224)
T cd03220          92 --GGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV  169 (224)
T ss_pred             --cccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence              12234668999999875432211     12345678889998889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.+.+.+++++|.|||++||+++++..++|
T Consensus       170 ~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d  210 (224)
T cd03220         170 LAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD  210 (224)
T ss_pred             cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999987778999999999999988776

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3.2e-47  Score=353.07  Aligned_cols=193  Identities=20%  Similarity=0.225  Sum_probs=166.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... ...+..++|
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~-~~~~~~i~~   81 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSF-EQLQKLVSD   81 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCH-HHHHHHhce
Confidence            6999999999998889999999999999999999999999999999999999999999999987654322 223456899


Q ss_pred             eeccccc--C------CCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           90 LSLKDAV--K------EKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        90 ~~~~~~~--~------~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++.+  +      ..+++.+++.+..   ....++.++++.+++.+..++++.+|||||||||+||+||+.+|++||
T Consensus        82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  158 (490)
T PRK10938         82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLI  158 (490)
T ss_pred             eccCcchhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            9987542  1      1467888765321   112346788999999988999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+.+++.+.+++.+++++|.|||++||+++++.+.+|
T Consensus       159 LDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d  203 (490)
T PRK10938        159 LDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQ  203 (490)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC
Confidence            999999999999999999999998778999999999999988764

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=4.8e-47  Score=321.09  Aligned_cols=191  Identities=29%  Similarity=0.432  Sum_probs=157.8

Q ss_pred             EEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           11 LLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        11 l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ++++|++++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i   79 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL-RWLRSQI   79 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH-HHHHhhE
Confidence            478999999964   469999999999999999999999999999999999999999999999998754332 2334579


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHH---------Hh--CCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE---------LM--GLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++ .|+.||+.+..... ......+.++         .+  ++....++++.+|||||||||+|||||+.+
T Consensus        80 ~~~~q~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~  157 (238)
T cd03249          80 GLVSQEPVLFD-GTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN  157 (238)
T ss_pred             EEECCchhhhh-hhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence            99999988776 59999997642211 1111222222         22  444456778899999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+++.+++ +|.|||++||++++++ .+|
T Consensus       158 p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~d  205 (238)
T cd03249         158 PKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NAD  205 (238)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hCC
Confidence            99999999999999999999999999987 7899999999999987 565

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=1.1e-46  Score=305.04  Aligned_cols=161  Identities=35%  Similarity=0.545  Sum_probs=145.3

Q ss_pred             EEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++|++++|++  +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ..++..++
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~   79 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP-NELGDHVG   79 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH-HHHHhheE
Confidence            478999999975  569999999999999999999999999999999999999999999999998865432 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      |++|++.+++. |+.||+                                ||||||||++|||||+.+|++|||||||++
T Consensus        80 ~~~q~~~~~~~-tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~  126 (173)
T cd03246          80 YLPQDDELFSG-SIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH  126 (173)
T ss_pred             EECCCCccccC-cHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            99999887774 998886                                999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+++.+.+++++++++|.|||++||+++.++ .+|
T Consensus       127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~d  163 (173)
T cd03246         127 LDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SAD  163 (173)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            9999999999999998777899999999998874 455

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=1.4e-46  Score=309.75  Aligned_cols=170  Identities=26%  Similarity=0.442  Sum_probs=152.8

Q ss_pred             CcEEEEeEEEEeCC------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchh
Q 027067            9 PRLLLKNVSCMRNA------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~~~------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~   80 (229)
                      +.++++||+++|++      +++++++||+|++||+++|+||||||||||+++|+|++  +|++|+|.++|+++...   
T Consensus         2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---   78 (194)
T cd03213           2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---   78 (194)
T ss_pred             cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH---
Confidence            35899999999975      68999999999999999999999999999999999999  99999999999988641   


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                       ..+..++|++|++.+++.+|+.||+.+....                        .+|||||+||++|||||+.+|+++
T Consensus        79 -~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~------------------------~~LS~G~~qrv~laral~~~p~il  133 (194)
T cd03213          79 -SFRKIIGYVPQDDILHPTLTVRETLMFAAKL------------------------RGLSGGERKRVSIALELVSNPSLL  133 (194)
T ss_pred             -hhhheEEEccCcccCCCCCcHHHHHHHHHHh------------------------ccCCHHHHHHHHHHHHHHcCCCEE
Confidence             3456799999999888889999998754211                        099999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++|.|+|++||+++ ++.+++|
T Consensus       134 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d  180 (194)
T cd03213         134 FLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD  180 (194)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence            999999999999999999999998777999999999996 6777666

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=8.2e-47  Score=319.13  Aligned_cols=191  Identities=27%  Similarity=0.404  Sum_probs=158.8

Q ss_pred             EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ++++|++++|+ ++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++|
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~-~~~~~~i~~   79 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL-DSLRRAIGV   79 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCH-HHHHhhEEE
Confidence            47899999996 5779999999999999999999999999999999999999999999999998865332 234567999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHH---------HHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL---------ELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      ++|++.+++ .|+.||+.+.... .......+.+         ..+  ++....++++.+|||||||||+|||||+.+|+
T Consensus        80 ~~q~~~~~~-~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~  157 (236)
T cd03253          80 VPQDTVLFN-DTIGYNIRYGRPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP  157 (236)
T ss_pred             ECCCChhhc-chHHHHHhhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence            999988875 6999999764211 1111122222         222  44445667789999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.+++.+.+++.++++ |.|||++||+++++.. +|
T Consensus       158 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~-~d  203 (236)
T cd03253         158 ILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVN-AD  203 (236)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh-CC
Confidence            9999999999999999999999999876 8999999999999865 54

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.7e-47  Score=352.76  Aligned_cols=198  Identities=17%  Similarity=0.228  Sum_probs=170.6

Q ss_pred             CcEEEEeEEEEe---CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhh
Q 027067            9 PRLLLKNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         9 ~~l~l~~l~~~~---~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      ++|+++|++++|   +++++|+++||+|.+||+++|+||||||||||+|+|+|+++| ++|+|+++|+++.........+
T Consensus       256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~  335 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR  335 (500)
T ss_pred             ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence            479999999999   356799999999999999999999999999999999999995 8999999999885432222345


Q ss_pred             hcceEeeccc---ccCCCCCHHHhHHHHHH--hc---C-c----cccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHH
Q 027067           85 LQLNWLSLKD---AVKEKFTVLDNVQWFEV--LE---G-K----QGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        85 ~~~~~~~~~~---~~~~~~tv~e~l~~~~~--~~---~-~----~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lA  150 (229)
                      .+++|++|+.   .+++.+|+.+|+.+...  ..   . .    ...+.++++.+++.. ..++++.+|||||||||+||
T Consensus       336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la  415 (500)
T TIGR02633       336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA  415 (500)
T ss_pred             CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence            6799999985   57888999999876421  11   0 1    123567899999964 67999999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||++||+.+++.+.+++.+++++|.|||++|||++++.+++|
T Consensus       416 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d  471 (500)
T TIGR02633       416 KMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD  471 (500)
T ss_pred             HHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            99999999999999999999999999999999998889999999999999998875

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-46  Score=320.61  Aligned_cols=198  Identities=24%  Similarity=0.238  Sum_probs=169.1

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch-hh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI-FH   81 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~-~~   81 (229)
                      .+.+.+++++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|     ++|+|+++|+++..... ..
T Consensus         6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~   85 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV   85 (261)
T ss_pred             CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence            3579999999999999999999999999999999999999999999999999986     79999999998753211 12


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCCh----hhcCCCCCCChhHHHHHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLGR----LAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~~----~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      .++..++|++|++.++ .+|+.||+.+......    ....+.++++.+++.+    ..++++.+|||||+||++|||||
T Consensus        86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral  164 (261)
T PRK14263         86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI  164 (261)
T ss_pred             hhhhceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence            3456799999998877 5899999987543211    1234567888888853    34678899999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      +.+|++|||||||+|||+.+++.+.+++.++++ +.|+|++||+++++.+++|.
T Consensus       165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~~i~~~~d~  217 (261)
T PRK14263        165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQQAIRVADT  217 (261)
T ss_pred             HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCE
Confidence            999999999999999999999999999999854 78999999999999887764

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=1.4e-46  Score=351.22  Aligned_cols=196  Identities=28%  Similarity=0.440  Sum_probs=166.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEc------------------
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWN------------------   70 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~------------------   70 (229)
                      |+++|++++|+++++|+++||+|++||+++|+||||||||||+|+|+|++  +|++|+|+++                  
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~   80 (520)
T TIGR03269         1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE   80 (520)
T ss_pred             CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence            57899999999889999999999999999999999999999999999997  7999999997                  


Q ss_pred             -----CEeCC-------CCc--hhhhhhhcceEeecc-cccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCCh
Q 027067           71 -----GHDIT-------QSG--IFHQYKLQLNWLSLK-DAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGR  130 (229)
Q Consensus        71 -----g~~~~-------~~~--~~~~~~~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~  130 (229)
                           |.++.       ...  .....+..++|++|+ +.+++.+|+.||+.+.......     ..++.++++.+|+.+
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~  160 (520)
T TIGR03269        81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSH  160 (520)
T ss_pred             ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChh
Confidence                 22221       000  011234568999997 6788889999999875432211     234567899999998


Q ss_pred             hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       131 ~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++.+ .|.|||+||||++.+.+.+|
T Consensus       161 ~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d  237 (520)
T TIGR03269       161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSD  237 (520)
T ss_pred             hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC
Confidence            88999999999999999999999999999999999999999999999999999855 48999999999999988775

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-46  Score=320.59  Aligned_cols=198  Identities=25%  Similarity=0.318  Sum_probs=167.0

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCc---
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSG---   78 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~---   78 (229)
                      ..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+.+|     ++|+|+++|.++....   
T Consensus        13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~   92 (265)
T PRK14252         13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV   92 (265)
T ss_pred             CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence            34689999999999988999999999999999999999999999999999999875     7999999998764210   


Q ss_pred             hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHH
Q 027067           79 IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~  148 (229)
                      .....+..++|++|++.+++. |+.||+.+.....+      ..+...++++.+++.    +..++.+.+|||||+|||+
T Consensus        93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~  171 (265)
T PRK14252         93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLC  171 (265)
T ss_pred             CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHH
Confidence            012345678999999888876 99999986532211      112345667777763    4568899999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+.+|+++||||||++||+.+++.+.+++.++++ +.|||++||+++++.+++|
T Consensus       172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~~~~~~~d  228 (265)
T PRK14252        172 IARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQQAARVSD  228 (265)
T ss_pred             HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHHhCC
Confidence            99999999999999999999999999999999999865 6899999999999988775

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.7e-46  Score=351.34  Aligned_cols=198  Identities=20%  Similarity=0.280  Sum_probs=170.1

Q ss_pred             CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067            8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ   76 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   76 (229)
                      .++|+++||+++|+           ++++|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~  351 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN  351 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence            45899999999995           3679999999999999999999999999999999999985 89999999998864


Q ss_pred             Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC-hhhcCCCCCCChhHH
Q 027067           77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG-RLAKEKARMLSMGQR  144 (229)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk  144 (229)
                      ....  ..++..++|++|++  .+++.+||.||+.+......       ....+.++++.+++. +..++++.+||||||
T Consensus       352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~  431 (529)
T PRK15134        352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQR  431 (529)
T ss_pred             cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHH
Confidence            3221  12345789999986  47888999999987532211       112456789999997 578999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||+||||++++.+.+|
T Consensus       432 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d  494 (529)
T PRK15134        432 QRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH  494 (529)
T ss_pred             HHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcC
Confidence            9999999999999999999999999999999999999998765 8999999999999998775

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=6.5e-47  Score=340.12  Aligned_cols=198  Identities=22%  Similarity=0.298  Sum_probs=183.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +.+++++++|+|++..++++|||+|.+||+.||+|+||||||||+++|.|+++|++|+|+++|+.+...++....+.+|+
T Consensus         3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG   82 (501)
T COG3845           3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG   82 (501)
T ss_pred             ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence            47999999999999999999999999999999999999999999999999999999999999999988777777888999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhc--------CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLE--------GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      +++|+..+++.+||.||+.++....        ....++.++.+++||.-..++++.+||-||||||.|.+||.++|++|
T Consensus        83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iL  162 (501)
T COG3845          83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLL  162 (501)
T ss_pred             EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEE
Confidence            9999999999999999998764321        11234667888999988889999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+-|-|...+.+.+.++.++++|+|||++||-++++..++|
T Consensus       163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaD  208 (501)
T COG3845         163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIAD  208 (501)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999875

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=1.1e-46  Score=315.47  Aligned_cols=189  Identities=30%  Similarity=0.391  Sum_probs=160.5

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++|++++|++  +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i   80 (221)
T cd03244           2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL-HDLRSRI   80 (221)
T ss_pred             cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCH-HHHhhhE
Confidence            3789999999964  479999999999999999999999999999999999999999999999998764332 2345679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++ .|+.||+.+...  ....+..++++.+++.+..           ++++.+||+||+||++|||||+.+
T Consensus        81 ~~~~q~~~l~~-~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~  157 (221)
T cd03244          81 SIIPQDPVLFS-GTIRSNLDPFGE--YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK  157 (221)
T ss_pred             EEECCCCcccc-chHHHHhCcCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence            99999988775 599999865321  1123345566666665544           468999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |+++||||||++||+.+++.+.++++++++ +.|||++||+++++..
T Consensus       158 p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~  203 (221)
T cd03244         158 SKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID  203 (221)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHhh
Confidence            999999999999999999999999998854 6899999999998876

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=1.3e-46  Score=317.59  Aligned_cols=175  Identities=27%  Similarity=0.362  Sum_probs=153.5

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~  105 (229)
                      |+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.....      ..+|++|++.+++.+|+.||
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~~v~q~~~l~~~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP------DRMVVFQNYSLLPWLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------hheEEecCcccCCCCCHHHH
Confidence            579999999999999999999999999999999999999999999998864321      24799999999998999999


Q ss_pred             HHHHHH--hcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 027067          106 VQWFEV--LEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE  178 (229)
Q Consensus       106 l~~~~~--~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~  178 (229)
                      +.+...  ....     ...+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            987532  1111     123567899999998899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          179 YIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       179 ~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +++.+++++ |+|||++||+++++.+++|
T Consensus       155 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d  183 (230)
T TIGR01184       155 EELMQIWEEHRVTVLMVTHDVDEALLLSD  183 (230)
T ss_pred             HHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence            999998664 8999999999999888764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=2e-46  Score=350.72  Aligned_cols=198  Identities=21%  Similarity=0.301  Sum_probs=167.7

Q ss_pred             CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCCch
Q 027067            9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQSGI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~~~   79 (229)
                      ++++++||+++|++    +++|+++||+|++||++||+||||||||||+|+|+|+++|     ++|+|+++|+++.....
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            58999999999963    5799999999999999999999999999999999999986     79999999999865332


Q ss_pred             hh--hh-hhcceEeecccc--cCCCCCHHHhHHHHHHhc-C-----ccccHHHHHHHhCCCh---hhcCCCCCCChhHHH
Q 027067           80 FH--QY-KLQLNWLSLKDA--VKEKFTVLDNVQWFEVLE-G-----KQGNSLPALELMGLGR---LAKEKARMLSMGQRK  145 (229)
Q Consensus        80 ~~--~~-~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~-~-----~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq  145 (229)
                      ..  .. ...++|++|++.  +++..++.+++.+..... .     ...++.++++.+++.+   ..++++.+|||||||
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q  163 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ  163 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence            11  12 246999999864  566779999986532211 1     1234567899999975   468999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||+||||++++..++|
T Consensus       164 rv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d  225 (529)
T PRK15134        164 RVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLAD  225 (529)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcC
Confidence            999999999999999999999999999999999999998765 8999999999999988764

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=3.9e-46  Score=306.58  Aligned_cols=169  Identities=27%  Similarity=0.426  Sum_probs=150.3

Q ss_pred             CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhh
Q 027067            9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~   82 (229)
                      ..++++|+++.|++    +++|+++||++++||+++|+||||||||||+++|+|+.  +|++|+|.++|+++.     ..
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-----~~   76 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-----KN   76 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-----HH
Confidence            36899999999974    67999999999999999999999999999999999986  489999999999875     23


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      .+..++|++|++.+++.+|+.||+.+....           .             +|||||+|||+||||++.+|++|||
T Consensus        77 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-----------~-------------~LSgGe~qrv~la~al~~~p~vlll  132 (192)
T cd03232          77 FQRSTGYVEQQDVHSPNLTVREALRFSALL-----------R-------------GLSVEQRKRLTIGVELAAKPSILFL  132 (192)
T ss_pred             hhhceEEecccCccccCCcHHHHHHHHHHH-----------h-------------cCCHHHhHHHHHHHHHhcCCcEEEE
Confidence            455789999998888989999998864210           0             9999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~  206 (229)
                      ||||++||+.+++.+.+++++++++|.|||++||+++ .+...+|
T Consensus       133 DEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d  177 (192)
T cd03232         133 DEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD  177 (192)
T ss_pred             eCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence            9999999999999999999998777899999999998 4666665

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=3e-46  Score=309.11  Aligned_cols=170  Identities=29%  Similarity=0.423  Sum_probs=149.8

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      |+++|++++|+++.+++|+||++.+||+++|+|+||||||||+++|+|+  ++|++|+|+++|+++.........+..++
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   80 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF   80 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence            5789999999988999999999999999999999999999999999999  57999999999999876432222234599


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      |++|++.+++..++.+++                          ++.+.+|||||+||++||||++.+|+++||||||++
T Consensus        81 ~v~q~~~~~~~~~~~~~l--------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~  134 (200)
T cd03217          81 LAFQYPPEIPGVKNADFL--------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSG  134 (200)
T ss_pred             EeecChhhccCccHHHHH--------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            999998888888887765                          122368999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh-hhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED-AMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~-~~~  206 (229)
                      ||+.+++.+.+++.++++++.|||++||+++.+.+ .+|
T Consensus       135 LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d  173 (200)
T cd03217         135 LDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPD  173 (200)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCC
Confidence            99999999999999987778999999999998887 554

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-46  Score=316.88  Aligned_cols=195  Identities=27%  Similarity=0.362  Sum_probs=166.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCc-hhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSG-IFHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~-~~~~~   83 (229)
                      +++++||+++|+++++|+|+||+|++||+++|+||||||||||+++|+|+.+     |++|+|+++|+++.... .....
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~   82 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL   82 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence            5899999999998899999999999999999999999999999999999864     48999999999875421 11234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLG----RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +..++|++|++.+++. |+.||+.+......      ....+.++++.+++.    +..++++.+||+|||||++|||||
T Consensus        83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral  161 (250)
T PRK14266         83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI  161 (250)
T ss_pred             hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence            5679999999888875 99999976532211      112345678888874    346888999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ +.|||++||+++++..+++
T Consensus       162 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~~~  213 (250)
T PRK14266        162 AVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQQATRVSK  213 (250)
T ss_pred             HcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHHhhcC
Confidence            999999999999999999999999999999854 7899999999999998775

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=3.1e-46  Score=348.81  Aligned_cols=201  Identities=25%  Similarity=0.329  Sum_probs=169.0

Q ss_pred             CCCcEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc-CEe---CCCC
Q 027067            7 PLPRLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-GHD---ITQS   77 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~-g~~---~~~~   77 (229)
                      ..++|+++||+++|+     ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++ |.+   +...
T Consensus       276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~  355 (520)
T TIGR03269       276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP  355 (520)
T ss_pred             CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence            346899999999994     2579999999999999999999999999999999999999999999996 642   2221


Q ss_pred             ch--hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----ccccHHHHHHHhCCCh-----hhcCCCCCCChhHHHH
Q 027067           78 GI--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----KQGNSLPALELMGLGR-----LAKEKARMLSMGQRKR  146 (229)
Q Consensus        78 ~~--~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~l~~~~l~~-----~~~~~~~~LSgGqkqR  146 (229)
                      ..  ....+..++|++|++.+++.+|+.||+.+......    ...++.++++.+++.+     ..++++.+||||||||
T Consensus       356 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qr  435 (520)
T TIGR03269       356 GPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHR  435 (520)
T ss_pred             chhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHH
Confidence            10  11234568999999888999999999986432111    1123567899999964     5789999999999999


Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          147 LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       147 v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+|||||+.+|++|||||||++||+.+++.+.+++++++++ |.|||++|||++++...+|.
T Consensus       436 v~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~  497 (520)
T TIGR03269       436 VALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDR  497 (520)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCE
Confidence            99999999999999999999999999999999999998654 89999999999999988763

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3.7e-46  Score=309.66  Aligned_cols=186  Identities=24%  Similarity=0.335  Sum_probs=157.5

Q ss_pred             CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ...++++|++++|++  +.+++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..... ...+.
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~-~~~~~   82 (207)
T cd03369           4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL-EDLRS   82 (207)
T ss_pred             CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH-HHHHh
Confidence            357999999999975  479999999999999999999999999999999999999999999999998754332 23456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      .++|++|++.+++. |+.||+.+...   .  ...++.+.++    .++++.+|||||+||++||||++.+|+++|||||
T Consensus        83 ~i~~v~q~~~~~~~-tv~~~l~~~~~---~--~~~~~~~~l~----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP  152 (207)
T cd03369          83 SLTIIPQDPTLFSG-TIRSNLDPFDE---Y--SDEEIYGALR----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA  152 (207)
T ss_pred             hEEEEecCCcccCc-cHHHHhcccCC---C--CHHHHHHHhh----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            79999999988764 99999965321   1  1122333333    4678999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.+++.++. +|.|+|++||+++.+.. +|
T Consensus       153 ~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~-~d  191 (207)
T cd03369         153 TASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID-YD  191 (207)
T ss_pred             cccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhh-CC
Confidence            99999999999999999885 48999999999998865 44

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=8.9e-46  Score=297.23  Aligned_cols=150  Identities=30%  Similarity=0.461  Sum_probs=136.3

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++||+++|+++++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++.........+..++|+
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~   80 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMV   80 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEE
Confidence            57899999999889999999999999999999999999999999999999999999999999886543222234467777


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      +|                                              ||+||+||++||||++.+|+++||||||++||
T Consensus        81 ~q----------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD  114 (163)
T cd03216          81 YQ----------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAALT  114 (163)
T ss_pred             Ee----------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCC
Confidence            66                                              99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+++.+.++++++++++.|+|++||+++++.+.+|
T Consensus       115 ~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d  150 (163)
T cd03216         115 PAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD  150 (163)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            999999999999987778999999999999888766

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=3.5e-46  Score=303.26  Aligned_cols=162  Identities=37%  Similarity=0.497  Sum_probs=145.1

Q ss_pred             EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++|++++|+++  ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...  ...++..++
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~   78 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL--EKALSSLIS   78 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH--HHHHHhhEE
Confidence            5789999999765  799999999999999999999999999999999999999999999999987532  123456789


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      |++|++.+++ .|++||+                             +.+||+||+||++||||++.+|++|||||||++
T Consensus        79 ~~~q~~~~~~-~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~  128 (178)
T cd03247          79 VLNQRPYLFD-TTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG  128 (178)
T ss_pred             EEccCCeeec-ccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            9999988775 5888886                             789999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+++.+.+.+.++. ++.|||++||++++++ .+|
T Consensus       129 LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~-~~d  164 (178)
T cd03247         129 LDPITERQLLSLIFEVL-KDKTLIWITHHLTGIE-HMD  164 (178)
T ss_pred             CCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-hCC
Confidence            99999999999999885 5899999999999886 344

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=5.3e-46  Score=300.44  Aligned_cols=160  Identities=33%  Similarity=0.513  Sum_probs=143.8

Q ss_pred             EEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++|++++|+++  .+++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..++
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~   79 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL-ESLRKNIA   79 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH-HHHHhhEE
Confidence            4789999999876  79999999999999999999999999999999999999999999999998764332 23456789


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      |++|++.+++ .|+.||+                                ||+||||||+||||++.+|++|||||||++
T Consensus        80 ~~~~~~~~~~-~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g  126 (171)
T cd03228          80 YVPQDPFLFS-GTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA  126 (171)
T ss_pred             EEcCCchhcc-chHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence            9999987775 5888876                                999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+.+++.+.+++.++++ ++|||++||++++++. +|
T Consensus       127 LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~~~~-~d  162 (171)
T cd03228         127 LDPETEALILEALRALAK-GKTVIVIAHRLSTIRD-AD  162 (171)
T ss_pred             CCHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHh-CC
Confidence            999999999999999864 7999999999999876 65

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2.4e-46  Score=350.02  Aligned_cols=184  Identities=30%  Similarity=0.418  Sum_probs=161.0

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...  ...++.+++
T Consensus       334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~--~~~lr~~i~  411 (529)
T TIGR02868       334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL--QDELRRRIS  411 (529)
T ss_pred             eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH--HHHHHhheE
Confidence            5999999999975 5799999999999999999999999999999999999999999999999999876  356788999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++. |++||+.++.. ...+++..++++.++++++..           .....||||||||++|||||+.+|
T Consensus       412 ~V~Q~~~lF~~-TI~eNI~~g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~  489 (529)
T TIGR02868       412 VFAQDAHLFDT-TVRDNLRLGRP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADA  489 (529)
T ss_pred             EEccCcccccc-cHHHHHhccCC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCC
Confidence            99999998876 99999998632 123455677888877765443           345679999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      ++||||||||+||+++.+.+.+.+.++. +++|+|+|||++
T Consensus       490 ~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       490 PILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence            9999999999999999999999888763 478999999974

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.1e-45  Score=306.23  Aligned_cols=179  Identities=22%  Similarity=0.281  Sum_probs=154.4

Q ss_pred             CcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhh
Q 027067            9 PRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFH   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   81 (229)
                      ..+.++||+|.|+    ++.+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+|+++|.++....  .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~   79 (202)
T cd03233           2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--E   79 (202)
T ss_pred             ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--h
Confidence            3688999999995    5689999999999999999999999999999999999999   89999999999876432  2


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ..+..++|++|++.+++.+|+.||+.+.....                  .++++.+||+||+||++|||||+.+|++||
T Consensus        80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------~~~~~~~LS~Ge~qrl~laral~~~p~lll  141 (202)
T cd03233          80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------GNEFVRGISGGERKRVSIAEALVSRASVLC  141 (202)
T ss_pred             hhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence            34567999999998999999999987643210                  567889999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE-eCChhhHHhhhcc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVA-THLPIQIEDAMNL  207 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v-tH~~~~~~~~~~~  207 (229)
                      |||||++||+.+++.+.+++.+++++ +.|+|++ +|+.+++.+.+|.
T Consensus       142 lDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~  189 (202)
T cd03233         142 WDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK  189 (202)
T ss_pred             EcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence            99999999999999999999998765 5665555 5666788877763

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=3.9e-46  Score=318.02  Aligned_cols=189  Identities=23%  Similarity=0.312  Sum_probs=162.6

Q ss_pred             EEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee
Q 027067           12 LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS   91 (229)
Q Consensus        12 ~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~   91 (229)
                      +++||++.    .+|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|+++|+++..... ...+..++|++
T Consensus         2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~-~~~~~~i~~v~   75 (248)
T PRK03695          2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSA-AELARHRAYLS   75 (248)
T ss_pred             cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCH-HHHhhheEEec
Confidence            57888875    38999999999999999999999999999999999986 48999999998865432 22345689999


Q ss_pred             cccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc-------CCCeE
Q 027067           92 LKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI-------DRPIW  160 (229)
Q Consensus        92 ~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~il  160 (229)
                      |++.+++.+|+.+|+.+.......    ...+.++++.+++.+..++++.+||||||||++|||||+.       +|++|
T Consensus        76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~ll  155 (248)
T PRK03695         76 QQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLL  155 (248)
T ss_pred             ccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEE
Confidence            998888889999999875321111    1235678999999888899999999999999999999997       67999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|
T Consensus       156 llDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d  201 (248)
T PRK03695        156 LLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD  201 (248)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999999987778999999999999988775

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=3.7e-46  Score=308.96  Aligned_cols=178  Identities=24%  Similarity=0.303  Sum_probs=148.8

Q ss_pred             EEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067           11 LLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus        11 l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ++++||+++|+++     ++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|+++|              
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------   66 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------   66 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence            5799999999764     799999999999999999999999999999999999999999999988              


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++|++|++.++ ..|++||+.+.....  .....++++.+++           ....++.+.+||+|||||++|||||+
T Consensus        67 ~i~~~~q~~~l~-~~t~~enl~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~  143 (204)
T cd03250          67 SIAYVSQEPWIQ-NGTIRENILFGKPFD--EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY  143 (204)
T ss_pred             EEEEEecCchhc-cCcHHHHhccCCCcC--HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence            478999998887 569999998642211  1122333333333           33345678999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEY-IIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+|+++||||||++||+.+++.+.+ ++..+.++|.|||++||+++.+.. +|
T Consensus       144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d  195 (204)
T cd03250         144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-AD  195 (204)
T ss_pred             cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CC
Confidence            9999999999999999999988877 566665668999999999988876 54

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=8.4e-46  Score=309.80  Aligned_cols=191  Identities=21%  Similarity=0.270  Sum_probs=156.6

Q ss_pred             EEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhcc
Q 027067           12 LLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQL   87 (229)
Q Consensus        12 ~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~~   87 (229)
                      .+.|+++.|+ +.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.....   ....+..+
T Consensus         2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i   81 (218)
T cd03290           2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV   81 (218)
T ss_pred             eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence            5789999996 5679999999999999999999999999999999999999999999999987754221   11234568


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++ ..|++||+.+....  ......++++.+++.+.           .++++.+|||||||||+||||++.+
T Consensus        82 ~~~~q~~~~~-~~t~~~nl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          82 AYAAQKPWLL-NATVEENITFGSPF--NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             EEEcCCCccc-cccHHHHHhhcCcC--CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            9999998877 56999999764321  11223455666666433           3467899999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEY--IIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~--~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+  +++.+++.|.|+|++||+++.+.. +|
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~-~d  209 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPH-AD  209 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhh-CC
Confidence            99999999999999999998887  777777778999999999988753 44

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-45  Score=325.12  Aligned_cols=197  Identities=26%  Similarity=0.348  Sum_probs=166.3

Q ss_pred             CCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEEcCEeCCCCch-
Q 027067            8 LPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----PSAGEILWNGHDITQSGI-   79 (229)
Q Consensus         8 ~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~~~~~~-   79 (229)
                      ..+++++|++++|.  .+++|+|+||+|++||++||+|+||||||||+++|+|+.+     |++|+|.++|+++..... 
T Consensus        78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~  157 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS  157 (329)
T ss_pred             CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            35899999999994  4579999999999999999999999999999999999986     579999999999863211 


Q ss_pred             hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--c----ccHHHHHHHhCCC----hhhcCCCCCCChhHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--Q----GNSLPALELMGLG----RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--~----~~~~~~l~~~~l~----~~~~~~~~~LSgGqkqRv~l  149 (229)
                      ....+..++|++|++.++. .|++||+.+.......  .    ..+.++++.+++.    ...++++.+|||||||||+|
T Consensus       158 ~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~L  236 (329)
T PRK14257        158 SLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCI  236 (329)
T ss_pred             hHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHH
Confidence            1234567999999998875 6999999875432211  1    1245667888773    35688999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++.+|+||||||||++||+.+...+.+.++.+.+ ++|||++||+++.+.+++|
T Consensus       237 ARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~~i~~~~D  292 (329)
T PRK14257        237 ARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMAQAQRISD  292 (329)
T ss_pred             HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999999999998865 6899999999999988664

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.1e-45  Score=339.04  Aligned_cols=200  Identities=27%  Similarity=0.418  Sum_probs=168.5

Q ss_pred             CCCcEEEEeEEEEeCC-----------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067            7 PLPRLLLKNVSCMRNA-----------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~-----------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      ..|.++++||++.|..           ..+++||||++.+||++||+|+||||||||.|+|+|+.+|++|+|.++|.+..
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~  356 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD  356 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence            4578999999999962           36899999999999999999999999999999999999999999999998722


Q ss_pred             C-CchhhhhhhcceEee--cccccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCCh-hhcCCCCCCChhHHH
Q 027067           76 Q-SGIFHQYKLQLNWLS--LKDAVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGR-LAKEKARMLSMGQRK  145 (229)
Q Consensus        76 ~-~~~~~~~~~~~~~~~--~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkq  145 (229)
                      - .......++++-+++  +..++.|.+||.+.+........      ..+++.++++.++|.. +++++|++|||||||
T Consensus       357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQ  436 (539)
T COG1123         357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQ  436 (539)
T ss_pred             cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhH
Confidence            1 111223334444445  45678999999999876543221      1234667899999975 799999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+|||||+.+|++|++|||||+||+..+..+.+++.+++++ |.|.|+||||+..++..+|
T Consensus       437 RvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~d  498 (539)
T COG1123         437 RVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIAD  498 (539)
T ss_pred             HHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCc
Confidence            999999999999999999999999999999999999998765 9999999999999999875

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1e-45  Score=311.95  Aligned_cols=179  Identities=25%  Similarity=0.320  Sum_probs=154.1

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchhhhhhhcceEeecccc--cCC
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA--VKE   98 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~   98 (229)
                      +++|+||+|++||+++|+||||||||||+|+|+|+++|    ++|+|+++|+++...   ...+..++|++|++.  +++
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~---~~~~~~i~~~~q~~~~~~~~   77 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNPRTAFNP   77 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh---hhhhheeEEEecCchhhcCc
Confidence            57899999999999999999999999999999999999    899999999987542   122357899999974  556


Q ss_pred             CCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCC---hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           99 KFTVLDNVQWFEVLEG-----KQGNSLPALELMGLG---RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~---~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      .+|+.+|+.+......     ...++.++++.+++.   +..++++.+|||||||||+||||++.+|++|||||||++||
T Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD  157 (230)
T TIGR02770        78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD  157 (230)
T ss_pred             ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence            7899999865432211     122356789999997   57899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          171 YDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+++.+.+++.+++++ |+|||++||+++++..++|
T Consensus       158 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d  194 (230)
T TIGR02770       158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIAD  194 (230)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999998764 8899999999999988775

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-45  Score=317.71  Aligned_cols=197  Identities=25%  Similarity=0.353  Sum_probs=168.2

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-C----CccEEEEcCEeCCCCchh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-P----SAGEILWNGHDITQSGIF   80 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p----~~G~I~~~g~~~~~~~~~   80 (229)
                      .|+++||+++|..    .++++||||+|++||++||+|+|||||||+.++|+|+++ |    .+|+|.|+|+++...+..
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            3789999999843    579999999999999999999999999999999999997 4    579999999998766543


Q ss_pred             h--h-hhhcceEeeccc--ccCCCCCHHHhHHHHHHhc-C------ccccHHHHHHHhCCCh---hhcCCCCCCChhHHH
Q 027067           81 H--Q-YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLE-G------KQGNSLPALELMGLGR---LAKEKARMLSMGQRK  145 (229)
Q Consensus        81 ~--~-~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~-~------~~~~~~~~l~~~~l~~---~~~~~~~~LSgGqkq  145 (229)
                      +  . +...+++++|++  ++.|.+|+.+.+.-..... .      ..+++.++|+.+|+.+   ..+.+|++|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence            2  1 235799999996  5788888887765433221 1      1235678899999963   569999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||.||.||+.+|++||+||||++||...+..+.++++++++ .|.++|+||||+..+.+.+|
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD  222 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD  222 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc
Confidence            99999999999999999999999999999999999999876 69999999999999999886

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.9e-47  Score=298.14  Aligned_cols=194  Identities=28%  Similarity=0.405  Sum_probs=173.4

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .++++++.+.-++.++|+++||++.+||+++|+||||||||||+|+++-+++|++|+++|.|++++..++ +.++.+++|
T Consensus         3 lle~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p-ea~Rq~VsY   81 (223)
T COG4619           3 LLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP-EAYRQQVSY   81 (223)
T ss_pred             chHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh-HHHHHHHHH
Confidence            4677788777789999999999999999999999999999999999999999999999999999988764 568889999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +.|.+.+|.. ||+||+.|....+.   ........++++++. .++++.+.+||||||||++|+|-|..-|+||+||||
T Consensus        82 ~~Q~paLfg~-tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~  160 (223)
T COG4619          82 CAQTPALFGD-TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI  160 (223)
T ss_pred             HHcCcccccc-chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence            9999999987 99999998766543   234466789999996 568999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhh
Q 027067          166 SVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ||+||+.+++.+.+++..+ ++++..++.||||.++.....
T Consensus       161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha  201 (223)
T COG4619         161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHA  201 (223)
T ss_pred             hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhh
Confidence            9999999999999999886 477899999999998855443

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.8e-46  Score=302.60  Aligned_cols=196  Identities=28%  Similarity=0.341  Sum_probs=175.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ||+.+|++++..++.+|++|||++.+||+.+|+||||||||||||.|+|...|++|++.++|.++..+... ...+..+.
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~-~lA~~raV   79 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE-ELARHRAV   79 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHH-HHHHHhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999877653 33455688


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cc--cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc------C
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QG--NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI------D  156 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~--~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------~  156 (229)
                      ++|+..+-+.+||.|.+.++....+.     +.  ...++|...++..+..+...+|||||||||.+||+|++      +
T Consensus        80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~  159 (259)
T COG4559          80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPS  159 (259)
T ss_pred             cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCC
Confidence            99999998899999999987543311     11  25678999999999999999999999999999999987      4


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++|+||||||+||..+++...++.+++..+|..|+.|-||++.....+|
T Consensus       160 ~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaD  209 (259)
T COG4559         160 GRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYAD  209 (259)
T ss_pred             CceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhh
Confidence            56999999999999999999999999999999999999999999999876

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=1.3e-45  Score=319.37  Aligned_cols=190  Identities=22%  Similarity=0.295  Sum_probs=165.2

Q ss_pred             cEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .|+++||+++|  ++..+|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|+++|.++...+. ...+..+
T Consensus         2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~-~~lr~~i   79 (275)
T cd03289           2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL-QKWRKAF   79 (275)
T ss_pred             eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH-HHHhhhE
Confidence            48899999999  45779999999999999999999999999999999999998 78999999999865432 2346689


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCC-----------CChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM-----------LSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++. |+++|+..+..  ...++..++++.+|+.+..++.+..           ||+|||||++||||++.+
T Consensus        80 ~~v~q~~~lf~~-tv~~nl~~~~~--~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~  156 (275)
T cd03289          80 GVIPQKVFIFSG-TFRKNLDPYGK--WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK  156 (275)
T ss_pred             EEECCCcccchh-hHHHHhhhccC--CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999998875 99999964321  1234566788999998888888876           999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+||||||||++||+.+++.+.+.+.+.. .++|||+|||+++.+.. +|
T Consensus       157 p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~~i~~-~d  204 (275)
T cd03289         157 AKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQ  204 (275)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHh-CC
Confidence            99999999999999999999999999864 48999999999998875 44

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-46  Score=311.74  Aligned_cols=204  Identities=29%  Similarity=0.448  Sum_probs=172.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++++|+|+|++|++||.++|+|||||||||||++++|.++|++|.+.+.|+...........++.||
T Consensus        30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG  109 (257)
T COG1119          30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG  109 (257)
T ss_pred             ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence            57999999999999999999999999999999999999999999999999999999999999998766544345778899


Q ss_pred             Eeecc--cccCCCCCHHHhHH--HHHHh--c--C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           89 WLSLK--DAVKEKFTVLDNVQ--WFEVL--E--G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        89 ~~~~~--~~~~~~~tv~e~l~--~~~~~--~--~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +++..  ..+.+..+++|-+.  ++...  +  .    ...++..+++.+|+.+..+++..+||-||||||.|||||+.+
T Consensus       110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~  189 (257)
T COG1119         110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKD  189 (257)
T ss_pred             ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcC
Confidence            99743  33445556766553  22111  1  1    123456789999999999999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCChhhHHhhhccCCCCCCCCcchHH
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKK--GGIVIVATHLPIQIEDAMNLRLPPRFPRRMTLV  220 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~~~~~~~~~~~~~~~~  220 (229)
                      |++|||||||+|||..+++.+.+.+.++...  +.++|+|||..++        +||+|++++.+.
T Consensus       190 P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eE--------i~~~~th~lll~  247 (257)
T COG1119         190 PELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEE--------IPPCFTHRLLLK  247 (257)
T ss_pred             CCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhh--------cccccceEEEee
Confidence            9999999999999999999999999998655  6789999998766        578888876654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1e-45  Score=343.99  Aligned_cols=193  Identities=18%  Similarity=0.314  Sum_probs=166.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++|+++     ++|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+.+++
T Consensus       256 ~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~  330 (501)
T PRK10762        256 VRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV  330 (501)
T ss_pred             cEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence            5799999985     37999999999999999999999999999999999999999999999998865432223345799


Q ss_pred             Eeeccc---ccCCCCCHHHhHHHHHH--hc---C------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           89 WLSLKD---AVKEKFTVLDNVQWFEV--LE---G------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        89 ~~~~~~---~~~~~~tv~e~l~~~~~--~~---~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      |++|++   .+++.+|+.||+.+...  ..   .      ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus       331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al  410 (501)
T PRK10762        331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGL  410 (501)
T ss_pred             EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence            999986   57788999999976321  10   0      112356789999995 678999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++++++++|.|||++|||++++..++|
T Consensus       411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d  463 (501)
T PRK10762        411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD  463 (501)
T ss_pred             hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence            99999999999999999999999999999998789999999999999998764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1e-45  Score=344.02  Aligned_cols=194  Identities=19%  Similarity=0.257  Sum_probs=166.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +.++++|+++.    .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus       256 ~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~  331 (501)
T PRK11288        256 VRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM  331 (501)
T ss_pred             cEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence            46999999842    58999999999999999999999999999999999999999999999998754322233456789


Q ss_pred             Eeeccc---ccCCCCCHHHhHHHHHHhc--------C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHH
Q 027067           89 WLSLKD---AVKEKFTVLDNVQWFEVLE--------G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        89 ~~~~~~---~~~~~~tv~e~l~~~~~~~--------~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      |++|++   .+++.+|+.||+.+.....        .   ....+.++++.+++. +..++++.+|||||||||+|||||
T Consensus       332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al  411 (501)
T PRK11288        332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWL  411 (501)
T ss_pred             EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHH
Confidence            999986   3788899999987532110        0   112356789999994 678999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||+|||+.+++.+.+++.+++++|.|||++|||++++.+++|
T Consensus       412 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d  464 (501)
T PRK11288        412 SEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVAD  464 (501)
T ss_pred             ccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCC
Confidence            99999999999999999999999999999998889999999999999998875

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=9.5e-46  Score=353.13  Aligned_cols=192  Identities=28%  Similarity=0.402  Sum_probs=166.9

Q ss_pred             CcEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|+..  .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|++||.|+...+. ...+++
T Consensus       470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~-~~lR~~  548 (709)
T COG2274         470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL-ASLRRQ  548 (709)
T ss_pred             ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH-HHHHhh
Confidence            359999999999765  69999999999999999999999999999999999999999999999999987664 467899


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.++.. |++||+.+..... ..+++.+++...|..++           .......||||||||++|||||+.
T Consensus       549 ig~V~Q~~~Lf~g-SI~eNi~l~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~  626 (709)
T COG2274         549 VGYVLQDPFLFSG-SIRENIALGNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS  626 (709)
T ss_pred             eeEEcccchhhcC-cHHHHHhcCCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhcc
Confidence            9999999988766 9999999865322 22345555555554443           456678899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||+.+++.+.+.+.++. .|+|+|++||+++.+..+
T Consensus       627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~ti~~a  674 (709)
T COG2274         627 KPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLSTIRSA  674 (709)
T ss_pred             CCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccchHhhhc
Confidence            999999999999999999999999998875 479999999999999886

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.5e-45  Score=352.65  Aligned_cols=188  Identities=27%  Similarity=0.391  Sum_probs=164.6

Q ss_pred             cEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+++|+  ++++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|++||+++...+. ..++.++
T Consensus       451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i  529 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV-QAVRRQL  529 (686)
T ss_pred             eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH-HHHHhcc
Confidence            599999999995  4679999999999999999999999999999999999999999999999999987654 4577899


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++.. |++||+.++..  ...++..++++.+++.++..           .....||||||||++|||||+.+
T Consensus       530 ~~v~Q~~~lf~g-TI~eNi~~~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~  606 (686)
T TIGR03797       530 GVVLQNGRLMSG-SIFENIAGGAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK  606 (686)
T ss_pred             EEEccCCccCcc-cHHHHHhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999999876 99999987643  23455677788877765543           34568999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |++||||||||+||+.+.+.+.+.++.+   ++|+|+|||+++.+..+
T Consensus       607 p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~  651 (686)
T TIGR03797       607 PRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNA  651 (686)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcC
Confidence            9999999999999999999998888765   57999999999888763

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=1.6e-45  Score=347.87  Aligned_cols=191  Identities=29%  Similarity=0.405  Sum_probs=163.6

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+++|++  +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|+++|.++..... ..++..+
T Consensus       341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~i  419 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL-ASLRNQV  419 (582)
T ss_pred             eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH-HHHHhhc
Confidence            5999999999964  679999999999999999999999999999999999999999999999999877653 3567789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++. |++||+.++.......++..++++.+++.++.           .....+||||||||++|||||+++
T Consensus       420 ~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~  498 (582)
T PRK11176        420 ALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRD  498 (582)
T ss_pred             eEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence            999999998875 99999987532112334566777777765443           233567999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++||||||||+||+.+...+.+.+.++. +++|+|+|||+++.+..
T Consensus       499 ~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~~~~~  544 (582)
T PRK11176        499 SPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEK  544 (582)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh
Confidence            99999999999999999999999988874 47999999999988765

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=2.8e-45  Score=346.72  Aligned_cols=190  Identities=24%  Similarity=0.380  Sum_probs=162.8

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||++.| +++++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|+++|.++...+. ..++++++
T Consensus       349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~-~~lr~~i~  426 (588)
T PRK11174        349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP-ESWRKHLS  426 (588)
T ss_pred             eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH-HHHHhheE
Confidence            59999999754 6678999999999999999999999999999999999999 999999999999987654 45678899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+|.. |++||+.++.. ...+++..++++.+++.+           ........||||||||++|||||+++|
T Consensus       427 ~v~Q~~~LF~~-TI~eNI~~g~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~  504 (588)
T PRK11174        427 WVGQNPQLPHG-TLRDNVLLGNP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC  504 (588)
T ss_pred             EecCCCcCCCc-CHHHHhhcCCC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999998876 99999988632 123345566666665543           334556789999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|||||||||+||.++.+.+.+.+.++. +++|+|++||+++.+..+
T Consensus       505 ~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~i~~a  550 (588)
T PRK11174        505 QLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLEDLAQW  550 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHHHHhC
Confidence            9999999999999999999999888874 479999999999888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=6.5e-45  Score=374.28  Aligned_cols=197  Identities=22%  Similarity=0.328  Sum_probs=176.7

Q ss_pred             CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..+|+++||+|+|++  +.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...  ....++
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~--~~~~r~ 2012 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTN--ISDVHQ 2012 (2272)
T ss_pred             CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcch--HHHHhh
Confidence            357999999999985  6799999999999999999999999999999999999999999999999998542  123456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .++|++|.+.+++.+|++|++.++...++.     ...+.++++.++|.+..++++++||||||||++||+||+.+|+||
T Consensus      2013 ~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257      2013 NMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred             hEEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            799999999999999999999886654332     123456799999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||+.+++.+++++.+++++|+|||++||++++++..+|
T Consensus      2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcD 2138 (2272)
T TIGR01257      2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCT 2138 (2272)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999988789999999999999998764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2e-46  Score=303.10  Aligned_cols=197  Identities=28%  Similarity=0.344  Sum_probs=176.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      |++++||+|+|+++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|+++|.++...+- ....+.++.
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s-~~LAk~lSI   79 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS-KELAKKLSI   79 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCCh-HHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999987543 345667788


Q ss_pred             eecccccCCCCCHHHhHHHHHHhc--C-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLE--G-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~--~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +.|...+...+||+|-+.|+...+  +     .+..+.++++.++|+++.+++..+||||||||+.+|..++++.+.++|
T Consensus        80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL  159 (252)
T COG4604          80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL  159 (252)
T ss_pred             HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence            889999999999999998864221  1     123467899999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||.++||.++.-.++++++.+.++ |+||++|-||.+++....|.
T Consensus       160 DEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~  205 (252)
T COG4604         160 DEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDH  205 (252)
T ss_pred             cCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhh
Confidence            9999999999999999999987654 99999999999999887764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=3e-45  Score=339.88  Aligned_cols=199  Identities=20%  Similarity=0.278  Sum_probs=163.8

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++|+++|+++.|+++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++.........+..
T Consensus       258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~  337 (490)
T PRK10938        258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH  337 (490)
T ss_pred             CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence            4589999999999988899999999999999999999999999999999998876 699999999875321111223567


Q ss_pred             ceEeecccccCCC--CCHHHhHHHHHH----hcC-----ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHh
Q 027067           87 LNWLSLKDAVKEK--FTVLDNVQWFEV----LEG-----KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        87 ~~~~~~~~~~~~~--~tv~e~l~~~~~----~~~-----~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      ++|++|++.++..  .++.+++.+...    ...     ....+.++++.+++.+ ..++++.+|||||||||+|||||+
T Consensus       338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~  417 (490)
T PRK10938        338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV  417 (490)
T ss_pred             ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence            9999998765432  466666543210    000     0124567899999987 889999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCChhhHHhh-hc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATHLPIQIEDA-MN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~-~~  206 (229)
                      .+|++|||||||+|||+.+++.+.++|.++++++ .|||++|||++++.++ ++
T Consensus       418 ~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d  471 (490)
T PRK10938        418 KHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITH  471 (490)
T ss_pred             cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhe
Confidence            9999999999999999999999999999997776 4699999999999874 44

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=5.8e-45  Score=343.90  Aligned_cols=192  Identities=31%  Similarity=0.453  Sum_probs=168.8

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +.++++||+++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..++.+
T Consensus       337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~  415 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE-AALRQA  415 (574)
T ss_pred             CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH-HHHHhh
Confidence            46999999999964  579999999999999999999999999999999999999999999999999887653 456778


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC----------CCCCCChhHHHHHHHHHHHhcC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE----------KARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~lAral~~~  156 (229)
                      ++|++|++.++.. |++||+.++.. ...+++..++++.+++.++.++          ....||||||||++||||++.+
T Consensus       416 i~~v~Q~~~lf~~-ti~~Ni~~~~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~  493 (574)
T PRK11160        416 ISVVSQRVHLFSA-TLRDNLLLAAP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHD  493 (574)
T ss_pred             eeEEcccchhhcc-cHHHHhhcCCC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999988875 99999987532 1234556788889888776654          5678999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..+
T Consensus       494 ~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~~~~~  540 (574)
T PRK11160        494 APLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTGLEQF  540 (574)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhHHHhC
Confidence            99999999999999999999999998875 489999999999988763

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=3.5e-45  Score=341.13  Aligned_cols=194  Identities=19%  Similarity=0.266  Sum_probs=165.6

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++|+++     .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+.++
T Consensus       266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i  340 (510)
T PRK15439        266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL  340 (510)
T ss_pred             CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence            35899999984     2699999999999999999999999999999999999999999999999886543322234578


Q ss_pred             eEeeccc---ccCCCCCHHHhHHHHH----Hhc-C---ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           88 NWLSLKD---AVKEKFTVLDNVQWFE----VLE-G---KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        88 ~~~~~~~---~~~~~~tv~e~l~~~~----~~~-~---~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      +|++|++   .+++.+|+.+|+....    ... .   ....+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus       341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~  420 (510)
T PRK15439        341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEA  420 (510)
T ss_pred             EECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhh
Confidence            9999874   4788889999985321    010 0   112355789999997 67899999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||+|||+.+++.+.+++++++++|.|||++|||++++.+.+|
T Consensus       421 ~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d  471 (510)
T PRK15439        421 SPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMAD  471 (510)
T ss_pred             CCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            999999999999999999999999999998789999999999999998775

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.6e-45  Score=338.23  Aligned_cols=197  Identities=20%  Similarity=0.278  Sum_probs=165.6

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++|+++.+  +++|+++||+|++||+++|+||||||||||+|+|+|+.+|++|+|+++|+++.........+..+
T Consensus       248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i  325 (491)
T PRK10982        248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF  325 (491)
T ss_pred             CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence            3579999999874  46999999999999999999999999999999999999999999999999886543323335568


Q ss_pred             eEeeccc---ccCCCCCHHHhH-----HHHHHhcC------ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067           88 NWLSLKD---AVKEKFTVLDNV-----QWFEVLEG------KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        88 ~~~~~~~---~~~~~~tv~e~l-----~~~~~~~~------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      +|++|+.   .+++.+++.+|.     .+......      ....+.++++.+++. +..++++.+|||||||||+||||
T Consensus       326 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~a  405 (491)
T PRK10982        326 ALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRW  405 (491)
T ss_pred             EEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHH
Confidence            9999874   467778877663     22111101      012346678889995 56799999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++.+|++|||||||+|||+.+++.+.+++.+++++|.|||++|||++++..++|
T Consensus       406 l~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d  459 (491)
T PRK10982        406 LLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITD  459 (491)
T ss_pred             HhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCC
Confidence            999999999999999999999999999999998889999999999999998775

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-45  Score=294.07  Aligned_cols=191  Identities=38%  Similarity=0.695  Sum_probs=173.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++.+|++...+...++.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|..+....  ..+....-
T Consensus         1 ~~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~--~~~~~~l~   78 (209)
T COG4133           1 MMLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR--ESYHQALL   78 (209)
T ss_pred             CcchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch--hhHHHHHH
Confidence            3688999999999999999999999999999999999999999999999999999999999998886532  22445567


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      |+.-++.+-..+|+.||+.|+......  ...+.++++.+||..+.|.++.+||-|||+||+|||.++..++++||||||
T Consensus        79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~  158 (209)
T COG4133          79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPF  158 (209)
T ss_pred             HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcc
Confidence            777788899999999999998876553  456789999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ++||.++...+..++.....+|..||++||.+-.+
T Consensus       159 taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~  193 (209)
T COG4133         159 TALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI  193 (209)
T ss_pred             cccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence            99999999999999999988999999999986444

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=6.7e-45  Score=344.41  Aligned_cols=190  Identities=28%  Similarity=0.401  Sum_probs=165.8

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.+||.++..... ..++.+++
T Consensus       340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~-~~l~~~i~  418 (592)
T PRK10790        340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH-SVLRQGVA  418 (592)
T ss_pred             eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH-HHHHhheE
Confidence            5999999999964 679999999999999999999999999999999999999999999999999976543 45678999


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+|+. |++||+.++.  ....+++.++++.+|+.++.+           .....||||||||++|||||+.+|
T Consensus       419 ~v~Q~~~lF~~-Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~  495 (592)
T PRK10790        419 MVQQDPVVLAD-TFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP  495 (592)
T ss_pred             EEccCCccccc-hHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence            99999999887 9999999864  223445667777777654433           345689999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++||||||||+||+++.+.+.+.+.++.+ ++|+|+|||+++.+..+
T Consensus       496 ~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~~l~~~  541 (592)
T PRK10790        496 QILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLSTIVEA  541 (592)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchHHHHhC
Confidence            99999999999999999999999988754 68999999999888763

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=1.1e-44  Score=291.61  Aligned_cols=154  Identities=29%  Similarity=0.368  Sum_probs=137.2

Q ss_pred             EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ++++|++++|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.            .+++|
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~   68 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLF   68 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEE
Confidence            47899999995 468999999999999999999999999999999999999999999999762            35899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL  169 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~L  169 (229)
                      ++|++.++ ..|+.||+.+.                         ++.+||||||||++||||++.+|+++||||||++|
T Consensus        69 ~~q~~~~~-~~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L  122 (166)
T cd03223          69 LPQRPYLP-LGTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL  122 (166)
T ss_pred             ECCCCccc-cccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence            99987765 56999998642                         46899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.+++.+.+++.++   +.|+|++||+++.. ..+|
T Consensus       123 D~~~~~~l~~~l~~~---~~tiiivsh~~~~~-~~~d  155 (166)
T cd03223         123 DEESEDRLYQLLKEL---GITVISVGHRPSLW-KFHD  155 (166)
T ss_pred             CHHHHHHHHHHHHHh---CCEEEEEeCChhHH-hhCC
Confidence            999999999998876   58999999998754 4554

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=8.8e-45  Score=311.12  Aligned_cols=190  Identities=22%  Similarity=0.311  Sum_probs=157.7

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..|+++|++++|++  +.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++..... ..++..
T Consensus        18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~-~~~~~~   96 (257)
T cd03288          18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL-HTLRSR   96 (257)
T ss_pred             ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH-HHHhhh
Confidence            46999999999976  579999999999999999999999999999999999999999999999998865432 234567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHH---------h--CCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---------M--GLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~---------~--~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |+.+|+.....  .......++++.         +  ++....++++.+||+||+||++|||||+.
T Consensus        97 i~~v~q~~~l~~~-tv~~nl~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~  173 (257)
T cd03288          97 LSIILQDPILFSG-SIRFNLDPECK--CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR  173 (257)
T ss_pred             EEEECCCCccccc-HHHHhcCcCCC--CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence            9999999887764 99998753211  011112223333         3  44445566778999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+++..+. ++.|||++||+++.+..
T Consensus       174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~~~~  220 (257)
T cd03288         174 KSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVSTILD  220 (257)
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHHHHh
Confidence            999999999999999999999999998874 48999999999999875

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=9.9e-45  Score=339.09  Aligned_cols=190  Identities=29%  Similarity=0.439  Sum_probs=164.2

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..+++++
T Consensus       320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~-~~lr~~i  398 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA-DSWRDQI  398 (529)
T ss_pred             eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH-HHHHhhe
Confidence            6999999999975  469999999999999999999999999999999999999999999999999877653 4567889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++. |++||+.++... ..+++..++++.+++.++.           .....+||||||||++||||++++
T Consensus       399 ~~v~Q~~~lf~~-ti~~Ni~~~~~~-~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~  476 (529)
T TIGR02857       399 AWVPQHPFLFAG-TIAENIRLARPD-ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD  476 (529)
T ss_pred             EEEcCCCcccCc-CHHHHHhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence            999999998865 999999875321 1234566777777765443           345678999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |+++||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..
T Consensus       477 ~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  522 (529)
T TIGR02857       477 APLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLALAER  522 (529)
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHh
Confidence            99999999999999999999999998874 58999999999988754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-44  Score=338.45  Aligned_cols=183  Identities=20%  Similarity=0.378  Sum_probs=160.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.            ..++
T Consensus       318 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~  385 (530)
T PRK15064        318 NALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIG  385 (530)
T ss_pred             ceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEE
Confidence            4899999999999889999999999999999999999999999999999999999999999762            2589


Q ss_pred             Eeecccc--cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           89 WLSLKDA--VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        89 ~~~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      |++|++.  +++.+|+.+|+.+..........+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus       386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEP  465 (530)
T PRK15064        386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP  465 (530)
T ss_pred             EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999863  5567899999865321111223466789999994 678999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.++++++   +.|||+||||++++..++|
T Consensus       466 t~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~~~~~~~d  503 (530)
T PRK15064        466 TNHMDMESIESLNMALEKY---EGTLIFVSHDREFVSSLAT  503 (530)
T ss_pred             CCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHhCC
Confidence            9999999999999998876   4599999999999998875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.2e-44  Score=340.63  Aligned_cols=182  Identities=28%  Similarity=0.376  Sum_probs=159.2

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.            ..+
T Consensus         5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i   72 (556)
T PRK11819          5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKV   72 (556)
T ss_pred             EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEE
Confidence            5899999999998 789999999999999999999999999999999999999999999998641            258


Q ss_pred             eEeecccccCCCCCHHHhHHHHHH-h-------c------C-c--------------------------cccHHHHHHHh
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEV-L-------E------G-K--------------------------QGNSLPALELM  126 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~-~-------~------~-~--------------------------~~~~~~~l~~~  126 (229)
                      +|++|++.+++.+|+.||+.+... .       .      . .                          ..++.++++.+
T Consensus        73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  152 (556)
T PRK11819         73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL  152 (556)
T ss_pred             EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence            999999999989999999975321 0       0      0 0                          12345678888


Q ss_pred             CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       127 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++++++.   .|||+||||++++..++|
T Consensus       153 gl~~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tviiisHd~~~~~~~~d  228 (556)
T PRK11819        153 RCPP-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVAVTHDRYFLDNVAG  228 (556)
T ss_pred             CCCc-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEEEeCCHHHHHhhcC
Confidence            9864 689999999999999999999999999999999999999999999999998763   599999999999998775

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-44  Score=338.13  Aligned_cols=182  Identities=27%  Similarity=0.367  Sum_probs=158.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ||+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.            ..++|
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~~i~~   68 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN------------ERLGK   68 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEE
Confidence            589999999999889999999999999999999999999999999999999999999999862            24789


Q ss_pred             eecccccCCCCCHHHhHHHHHH-h----------c--------------------------CccccHHHHHHHhCCChhh
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEV-L----------E--------------------------GKQGNSLPALELMGLGRLA  132 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~-~----------~--------------------------~~~~~~~~~l~~~~l~~~~  132 (229)
                      ++|++.+++.+|+.||+.+... .          .                          ....++.++++.+|+.+..
T Consensus        69 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~  148 (530)
T PRK15064         69 LRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQ  148 (530)
T ss_pred             EeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhH
Confidence            9999888889999999875311 0          0                          0012345678899997644


Q ss_pred             -cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          133 -KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       133 -~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                       ++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.+   .|.|||+||||++++.+.+|
T Consensus       149 ~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~~~~~~~d  220 (530)
T PRK15064        149 HYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRHFLNSVCT  220 (530)
T ss_pred             hcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHHHHHhhcc
Confidence             578999999999999999999999999999999999999999999998853   58899999999999988775

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-45  Score=340.78  Aligned_cols=192  Identities=23%  Similarity=0.364  Sum_probs=166.8

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+|.|..   .++|+|+||+|+|||++|||||||+||||+.++|..+|.|++|+|.+||.|+.+.+. ..+++
T Consensus       464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~-~~lr~  542 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINH-KYLRR  542 (716)
T ss_pred             ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCH-HHHHH
Confidence            46999999999965   469999999999999999999999999999999999999999999999999988764 45778


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++++.|+|.+|.. |+.|||.|+.. ....+++..+.++.+-           +.....+..+||||||||++|||||+
T Consensus       543 ~Ig~V~QEPvLFs~-sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl  620 (716)
T KOG0058|consen  543 KIGLVGQEPVLFSG-SIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL  620 (716)
T ss_pred             Heeeeeccceeecc-cHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence            99999999999876 99999998754 2233444444444333           33345678899999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +||.||||||.||+||.++...+.+.+....+ ++|||++.|.++.++.+
T Consensus       621 r~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLSTV~~A  669 (716)
T KOG0058|consen  621 RNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTVRHA  669 (716)
T ss_pred             cCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhHhhhc
Confidence            99999999999999999999999999988754 59999999999999986

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.6e-45  Score=332.89  Aligned_cols=190  Identities=31%  Similarity=0.429  Sum_probs=166.9

Q ss_pred             EEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ++++|+++.|++. ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+....+. ..++++++|
T Consensus       321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~-~~~~k~i~~  399 (559)
T COG4988         321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP-EAWRKQISW  399 (559)
T ss_pred             eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH-HHHHhHeee
Confidence            5556999999654 99999999999999999999999999999999999999999999999999877653 467889999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC----------CCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE----------KARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~----------~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      ++|++.++.. |++||+.++... ..++++.++++..++.++.++          ....|||||+|||++||||+.++++
T Consensus       400 v~Q~p~lf~g-TireNi~l~~~~-~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l  477 (559)
T COG4988         400 VSQNPYLFAG-TIRENILLARPD-ASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL  477 (559)
T ss_pred             eCCCCccccc-cHHHHhhccCCc-CCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence            9999999887 999999886432 234567778888877665543          4566999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+||||++||.++.+.+.+.+.++.+ ++|+|++||++..+.++
T Consensus       478 ~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~~~~~  521 (559)
T COG4988         478 LLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAADA  521 (559)
T ss_pred             EEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHHHhcC
Confidence            999999999999999999999999866 58999999999888775

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=4e-44  Score=368.47  Aligned_cols=195  Identities=25%  Similarity=0.384  Sum_probs=175.3

Q ss_pred             CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +.|+++||++.|+  ++.+++|+||++.+||+++|+||||||||||+|+|+|+++|++|+|+++|+++...  ....++.
T Consensus       927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~--~~~~r~~ 1004 (2272)
T TIGR01257       927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN--LDAVRQS 1004 (2272)
T ss_pred             ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch--HHHHhhc
Confidence            4799999999995  57899999999999999999999999999999999999999999999999998642  2334567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++.+||+||+.++....+.     +.++.++++.+|+.+..++++.+|||||||||+||+||+.+|++||
T Consensus      1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLL 1084 (2272)
T TIGR01257      1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084 (2272)
T ss_pred             EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999987654331     2345678999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+|||+.+++.+.+++++++ +|+|||++||++++++..+|
T Consensus      1085 LDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmdea~~laD 1128 (2272)
T TIGR01257      1085 LDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMDEADLLGD 1128 (2272)
T ss_pred             EECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCC
Confidence            999999999999999999999985 58999999999999988764

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.1e-44  Score=349.34  Aligned_cols=190  Identities=24%  Similarity=0.357  Sum_probs=163.2

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|+ ++++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|++||.++...+. ..++.+++
T Consensus       473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i~  551 (708)
T TIGR01193       473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR-HTLRQFIN  551 (708)
T ss_pred             cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH-HHHHHheE
Confidence            599999999996 4789999999999999999999999999999999999999999999999999876553 45678899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.++.. |++||+.++.......++..++++..++.++           .......||||||||++||||++++|
T Consensus       552 ~v~Q~~~lf~g-TI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p  630 (708)
T TIGR01193       552 YLPQEPYIFSG-SILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS  630 (708)
T ss_pred             EEecCceehhH-HHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence            99999998876 9999998762111223455666776666443           33456789999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ++|||||||++||+.+.+.+.+.+..+  +++|+|+|||+++.+..
T Consensus       631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~  674 (708)
T TIGR01193       631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQ  674 (708)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHc
Confidence            999999999999999999999988875  47899999999988765

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=1e-44  Score=349.54  Aligned_cols=188  Identities=26%  Similarity=0.380  Sum_probs=162.3

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+++|++  +++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|++||.++...+. ..+++++
T Consensus       477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~-~~lr~~i  555 (710)
T TIGR03796       477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR-EVLANSV  555 (710)
T ss_pred             eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH-HHHHhhe
Confidence            5999999999974  679999999999999999999999999999999999999999999999999876553 4567899


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++.. |++||+.++.. ....++..++++..++.++.           ......||||||||++|||||+.+
T Consensus       556 ~~v~Q~~~lf~g-Ti~eNi~l~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~  633 (710)
T TIGR03796       556 AMVDQDIFLFEG-TVRDNLTLWDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN  633 (710)
T ss_pred             eEEecCChhhhc-cHHHHhhCCCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence            999999998865 99999987532 12334566677776665443           345678999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++||||||||+||+.+.+.+.+.+.+   .++|+|+|||+++.+..
T Consensus       634 p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~  677 (710)
T TIGR03796       634 PSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRD  677 (710)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHh
Confidence            999999999999999999998888865   48999999999988876

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.9e-44  Score=339.27  Aligned_cols=184  Identities=23%  Similarity=0.258  Sum_probs=163.5

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++   +           .+
T Consensus       338 ~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~-----------~i  402 (590)
T PRK13409        338 ETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---L-----------KI  402 (590)
T ss_pred             ceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---e-----------eE
Confidence            3579999999999875 4999999999999999999999999999999999999999999884   1           47


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      +|++|+..+++.+||.||+.+............++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus       403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~  482 (590)
T PRK13409        403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSA  482 (590)
T ss_pred             EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            89999888888899999998643221122245678999999988999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          168 ALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+.+++.+.++|+++.++ |+|||+||||++++...+|
T Consensus       483 ~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aD  522 (590)
T PRK13409        483 HLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISD  522 (590)
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999998664 8999999999999988765

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=5.4e-44  Score=328.97  Aligned_cols=186  Identities=20%  Similarity=0.313  Sum_probs=159.3

Q ss_pred             CCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            8 LPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      .++++++||+++|++   +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.+..         
T Consensus        19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---------   89 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---------   89 (549)
T ss_pred             cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---------
Confidence            358999999999976   46999999999999999999999999999999999999999999999997521         


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                           +.....+.+.+|+.||+.+.......     ...+.++++.+++.+..++++.+||||||||++|||||+.+|++
T Consensus        90 -----i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L  164 (549)
T PRK13545         90 -----IAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI  164 (549)
T ss_pred             -----EEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence                 11122345668999999764332211     12244678899999889999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||||++||+.+++.+.+++.+++++|.|||++||+++++..++|.
T Consensus       165 LLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~Dr  212 (549)
T PRK13545        165 LVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK  212 (549)
T ss_pred             EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence            999999999999999999999999887799999999999999887753

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1.1e-44  Score=341.37  Aligned_cols=191  Identities=28%  Similarity=0.440  Sum_probs=163.9

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+++|++  +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|+++|.++...+. ..++..+
T Consensus       330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~-~~~~~~i  408 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL-ASLRRQV  408 (571)
T ss_pred             eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH-HHHHhhc
Confidence            5999999999964  679999999999999999999999999999999999999999999999999876553 3467789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++.. |++||+.++......+++..++++.+++.++..+           ....||||||||++||||++.+
T Consensus       409 ~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~  487 (571)
T TIGR02203       409 ALVSQDVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKD  487 (571)
T ss_pred             eEEccCcccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            999999988866 9999998763211234456777888777654433           3467999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |+++||||||++||..+.+.+.+.+.++. +++|+|+|||+++.+..
T Consensus       488 ~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~~~~~  533 (571)
T TIGR02203       488 APILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLSTIEK  533 (571)
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhHHHHh
Confidence            99999999999999999999999998874 47999999999977654

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=3.9e-44  Score=328.91  Aligned_cols=198  Identities=23%  Similarity=0.322  Sum_probs=167.6

Q ss_pred             CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC----ccEEEEcCEeCCCCchh
Q 027067            9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----AGEILWNGHDITQSGIF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~----~G~I~~~g~~~~~~~~~   80 (229)
                      ++|+++||++.|..    ..+++||||+|.+||++||+|+|||||||+.++|.|++++.    +|+|.|+|+++......
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            48999999999853    36999999999999999999999999999999999999987    79999999987665431


Q ss_pred             ---hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC------ccccHHHHHHHhCCChhhc--CCCCCCChhHHHHH
Q 027067           81 ---HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG------KQGNSLPALELMGLGRLAK--EKARMLSMGQRKRL  147 (229)
Q Consensus        81 ---~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~------~~~~~~~~l~~~~l~~~~~--~~~~~LSgGqkqRv  147 (229)
                         ......+++++|++  .+.|.+|+.+.+.-......      ...++.++|+.+|+.+...  ++|++|||||||||
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence               12346799999986  46676888777654322221      2345678899999975544  59999999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .||+||+.+|++||+||||++||+..+..+.++|++++ +.|.++|+||||+..+.+.+|
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aD  223 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELAD  223 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcC
Confidence            99999999999999999999999999999999999986 559999999999999999875

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=2.3e-44  Score=346.44  Aligned_cols=192  Identities=29%  Similarity=0.425  Sum_probs=165.2

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|++  +++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|.+||.++...+. ..++.+
T Consensus       462 ~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~-~~lr~~  540 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP-ADLRRN  540 (694)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH-HHHHhc
Confidence            35999999999963  579999999999999999999999999999999999999999999999999987654 456789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.++.. |++||+.++.. ....++..++++.+++.++.           ......||||||||++|||||+.
T Consensus       541 i~~v~Q~~~lf~~-TI~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~  618 (694)
T TIGR03375       541 IGYVPQDPRLFYG-TLRDNIALGAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLR  618 (694)
T ss_pred             cEEECCChhhhhh-hHHHHHhCCCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999998876 99999987532 12334556677776665443           34557899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|++||||||||+||+++.+.+.+.+.++. +++|+|+|||+++.+..+
T Consensus       619 ~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~~~~~~  666 (694)
T TIGR03375       619 DPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTSLLDLV  666 (694)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhC
Confidence            999999999999999999999999998875 479999999999887653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=3.5e-44  Score=339.32  Aligned_cols=190  Identities=25%  Similarity=0.364  Sum_probs=162.5

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|++ +++|+|+||++++||+++|+|+||||||||+|+|+|+++|++|+|+++|.++...+. ..++..++
T Consensus       334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~  412 (588)
T PRK13657        334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR-ASLRRNIA  412 (588)
T ss_pred             eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH-HHHHhheE
Confidence            5999999999965 679999999999999999999999999999999999999999999999999987653 45677899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.++.. |++||+.++.. ...+++..++++.+++.++           .......||||||||++|||||+.+|
T Consensus       413 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~  490 (588)
T PRK13657        413 VVFQDAGLFNR-SIEDNIRVGRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP  490 (588)
T ss_pred             EEecCcccccc-cHHHHHhcCCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999998865 99999987532 1123445566666665433           33445679999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +++|||||||+||+.+.+.+.+.+..+. +++|+|+|||+++.+..
T Consensus       491 ~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~~~~~  535 (588)
T PRK13657        491 PILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLSTVRN  535 (588)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHHHHHh
Confidence            9999999999999999999999888764 47999999999988764

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=3.1e-44  Score=306.19  Aligned_cols=171  Identities=23%  Similarity=0.288  Sum_probs=146.8

Q ss_pred             eeeeeeeeEEEe-----CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067           23 QQILRHVNISIH-----DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK   97 (229)
Q Consensus        23 ~~iL~~vsl~i~-----~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (229)
                      .+.+++++|++.     +||+++|+||||||||||+++|+|+++|++|+|.++|.             .++|++|+....
T Consensus         7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~   73 (246)
T cd03237           7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKAD   73 (246)
T ss_pred             ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCC
Confidence            345666676665     79999999999999999999999999999999999874             467888887777


Q ss_pred             CCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH
Q 027067           98 EKFTVLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL  176 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~  176 (229)
                      ...|+.|++.+...... ......++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||++||+.+++.
T Consensus        74 ~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~  153 (246)
T cd03237          74 YEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLM  153 (246)
T ss_pred             CCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence            77899999875432111 12235678899999988999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          177 LEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       177 l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.++++++++ .++|||+||||++++...+|
T Consensus       154 l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d  184 (246)
T cd03237         154 ASKVIRRFAENNEKTAFVVEHDIIMIDYLAD  184 (246)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            9999999865 48999999999999988765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=2.8e-44  Score=346.63  Aligned_cols=190  Identities=24%  Similarity=0.351  Sum_probs=160.4

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+++|++   +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..... ..++.
T Consensus       477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~-~~lr~  555 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH-HYLHR  555 (711)
T ss_pred             CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH-HHHHh
Confidence            35999999999964   579999999999999999999999999999999999999999999999999976543 45677


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++|++|++.++.. |++||+.++... ..+++..++++.+++.++.           .....+||||||||++||||++
T Consensus       556 ~i~~v~Q~~~lF~g-TIreNI~~g~~~-~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl  633 (711)
T TIGR00958       556 QVALVGQEPVLFSG-SVRENIAYGLTD-TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV  633 (711)
T ss_pred             hceEEecCcccccc-CHHHHHhcCCCC-CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence            89999999998865 999999876321 1234566677777765443           3345689999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++|+|||||||||+||+++.+.+.+ ..  ..+++|+|+|||+++.++.+
T Consensus       634 ~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~a  680 (711)
T TIGR00958       634 RKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERA  680 (711)
T ss_pred             cCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhC
Confidence            9999999999999999999888887 22  23578999999999887653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-43  Score=304.25  Aligned_cols=183  Identities=20%  Similarity=0.292  Sum_probs=154.7

Q ss_pred             cEEEEeEEEEeC--------------------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           10 RLLLKNVSCMRN--------------------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        10 ~l~l~~l~~~~~--------------------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      .++++||++.|.                    .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~   83 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR   83 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence            578899987652                    235999999999999999999999999999999999999999999999


Q ss_pred             cCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-c----ccHHHHHHHhCCChhhcCCCCCCChhHH
Q 027067           70 NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-Q----GNSLPALELMGLGRLAKEKARMLSMGQR  144 (229)
Q Consensus        70 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~----~~~~~~l~~~~l~~~~~~~~~~LSgGqk  144 (229)
                      +|..              +++++...+.+.+|+.+|+.+....... .    .....+++.+++.+..++++.+||+||+
T Consensus        84 ~g~~--------------~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~  149 (264)
T PRK13546         84 NGEV--------------SVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMR  149 (264)
T ss_pred             CCEE--------------eEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHH
Confidence            9852              2233444456678999999764332211 1    1234567788998889999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+||||++.+|++|||||||++||+.+++.+.+++.++++.|.|||++||+++++.+++|
T Consensus       150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d  211 (264)
T PRK13546        150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCT  211 (264)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcC
Confidence            99999999999999999999999999999999999999987779999999999999988776

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=8e-44  Score=334.20  Aligned_cols=192  Identities=29%  Similarity=0.443  Sum_probs=161.9

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++|++++|++  +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++..
T Consensus       315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~-~~~~~~  393 (544)
T TIGR01842       315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR-ETFGKH  393 (544)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH-HHHhhh
Confidence            35999999999953  689999999999999999999999999999999999999999999999999876543 346778


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHH---------h--CCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---------M--GLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~---------~--~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++... ...++..++++.         +  |++....+...+||||||||++||||++.
T Consensus       394 i~~v~q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~  471 (544)
T TIGR01842       394 IGYLPQDVELFPG-TVAENIARFGEN-ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG  471 (544)
T ss_pred             eEEecCCcccccc-cHHHHHhccCCC-CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence            9999999998876 999999854311 112223333333         3  44445566788999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+.+.++..+++|+|++||+++.++.
T Consensus       472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~  519 (544)
T TIGR01842       472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGC  519 (544)
T ss_pred             CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHh
Confidence            999999999999999999999999998886668999999999987653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=9.3e-44  Score=334.34  Aligned_cols=185  Identities=24%  Similarity=0.335  Sum_probs=161.0

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++++|++++|+++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|++++ +           ..+
T Consensus       320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-----------~~i  387 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-----------VKL  387 (552)
T ss_pred             CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----------eEE
Confidence            3689999999999988999999999999999999999999999999999999999999999843 1           148


Q ss_pred             eEeeccc-ccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKD-AVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~-~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|++ .+++.+|+.||+.+......   ......++++.+++.. ..++++.+|||||||||+|||||+.+|++|||
T Consensus       388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllL  467 (552)
T TIGR03719       388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLL  467 (552)
T ss_pred             EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence            9999986 47888999999987532111   1223457889999964 57999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||++||+.+++.+.++|.++.   .|||+||||++++...+|.
T Consensus       468 DEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~~~~~~~d~  509 (552)
T TIGR03719       468 DEPTNDLDVETLRALEEALLEFA---GCAVVISHDRWFLDRIATH  509 (552)
T ss_pred             eCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHHHHHHhCCE
Confidence            99999999999999999998873   4899999999999887653

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=5.4e-44  Score=336.79  Aligned_cols=192  Identities=28%  Similarity=0.414  Sum_probs=166.1

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||++.|+ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++...+. ..++.++
T Consensus       327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~-~~lr~~I  405 (567)
T COG1132         327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL-DSLRKRI  405 (567)
T ss_pred             CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH-HHHHHhc
Confidence            3499999999998 6899999999999999999999999999999999999999999999999999987654 4578899


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhC-----------CChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      ++++|++.+|. -|++||+.++... ..++++.++++..+           ++.........||||||||++||||++.+
T Consensus       406 ~~V~Qd~~LF~-~TI~~NI~~g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~  483 (567)
T COG1132         406 GIVSQDPLLFS-GTIRENIALGRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN  483 (567)
T ss_pred             cEEcccceeec-ccHHHHHhcCCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence            99999999988 5999999987432 12334555555443           44444556679999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |++||||||||+||..+...+.+.+.++. +++|+|+|+|+++.+.++
T Consensus       484 ~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~a  530 (567)
T COG1132         484 PPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNA  530 (567)
T ss_pred             CCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhC
Confidence            99999999999999999999999998776 568999999999998884

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.3e-43  Score=333.69  Aligned_cols=185  Identities=25%  Similarity=0.346  Sum_probs=161.5

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++||++.|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|++++ +           ..+
T Consensus       322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-----------~~i  389 (556)
T PRK11819        322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-----------VKL  389 (556)
T ss_pred             CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-----------eEE
Confidence            3589999999999999999999999999999999999999999999999999999999999843 1           148


Q ss_pred             eEeeccc-ccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKD-AVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~-~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|+. .+++.+|+.||+.+......   .......+++.+++.. ..++++.+|||||||||+||||++.+|++|||
T Consensus       390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  469 (556)
T PRK11819        390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL  469 (556)
T ss_pred             EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            9999986 67888999999986532111   1223456899999964 57999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||+|||+.+++.+.++|.++.   .|||+||||++++...+|.
T Consensus       470 DEPt~~LD~~~~~~l~~~l~~~~---~tvi~vtHd~~~~~~~~d~  511 (556)
T PRK11819        470 DEPTNDLDVETLRALEEALLEFP---GCAVVISHDRWFLDRIATH  511 (556)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhCC---CeEEEEECCHHHHHHhCCE
Confidence            99999999999999999998873   4899999999999988763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=6.9e-44  Score=335.21  Aligned_cols=182  Identities=27%  Similarity=0.349  Sum_probs=156.8

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ++++++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.            ..+
T Consensus         3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i   70 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKV   70 (552)
T ss_pred             EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEE
Confidence            5899999999998 788999999999999999999999999999999999999999999998641            258


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHh---------------cC-cc-------------------------ccHHHHHHHh
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVL---------------EG-KQ-------------------------GNSLPALELM  126 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~---------------~~-~~-------------------------~~~~~~l~~~  126 (229)
                      +|++|++.+++.+|+.||+.+....               .. ..                         .++.++++.+
T Consensus        71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            9999999998999999999763210               00 00                         1223456677


Q ss_pred             CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          127 GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       127 ~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++.++   +.|||+||||++.+..++|
T Consensus       151 ~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d  226 (552)
T TIGR03719       151 RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAG  226 (552)
T ss_pred             CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcC
Confidence            7753 58899999999999999999999999999999999999999999999998776   3599999999999998775

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.6e-44  Score=282.49  Aligned_cols=196  Identities=25%  Similarity=0.348  Sum_probs=172.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC-----chhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-----GIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~-----~~~~~~~   84 (229)
                      .|+++|+++.||..++|.||+|+.+.||.+.++||||||||||+|.+.=+.-|.+|+..+.|......     ....+.+
T Consensus         2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr   81 (242)
T COG4161           2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR   81 (242)
T ss_pred             ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999987653211     1234567


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHH-HhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFE-VLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +.+|+++|+..++|.+||.||+.-.. ...+     ...++.++++++.+.++.|+.|-.|||||+|||+|||||+++|+
T Consensus        82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq  161 (242)
T COG4161          82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ  161 (242)
T ss_pred             HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence            88999999999999999999986432 2211     12356788999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      +|++||||++|||+-...+.++++++.+.|.|-++|||..+......
T Consensus       162 vllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a  208 (242)
T COG4161         162 VLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA  208 (242)
T ss_pred             EEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh
Confidence            99999999999999888999999999999999999999988877754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=5e-44  Score=306.40  Aligned_cols=191  Identities=23%  Similarity=0.248  Sum_probs=157.1

Q ss_pred             EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCchh-
Q 027067           14 KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGIF-   80 (229)
Q Consensus        14 ~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~~-   80 (229)
                      .||+++|+++ .+|+|+|+ +++||+++|+||||||||||+|+|+|+++|++|+|+           ++|+++...... 
T Consensus         4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~   82 (255)
T cd03236           4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL   82 (255)
T ss_pred             cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence            4789999765 59999994 999999999999999999999999999999999996           777776432110 


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ......++|+++...+++. ++.+++..............++++.+++.+..++.+.+||+|||||++||||++.+|+++
T Consensus        83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~il  161 (255)
T cd03236          83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFY  161 (255)
T ss_pred             hhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            0111236777777666663 666766543211112345678899999998899999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++++++++++|||++||+++.+..++|
T Consensus       162 llDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad  207 (255)
T cd03236         162 FFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSD  207 (255)
T ss_pred             EEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence            9999999999999999999999988778999999999999988765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=6.3e-44  Score=299.87  Aligned_cols=171  Identities=29%  Similarity=0.354  Sum_probs=147.6

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCC--CCCHHHhHHH
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE--KFTVLDNVQW  108 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~tv~e~l~~  108 (229)
                      |+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++..      .+..++|++|++.++.  ..|+.+|+.+
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~------~~~~i~~v~q~~~~~~~~~~tv~~~l~~   74 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK------GWRHIGYVPQRHEFAWDFPISVAHTVMS   74 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH------hhCcEEEecccccccCCCCccHHHHHHh
Confidence            5789999999999999999999999999999999999999987531      2457899999877643  4689999876


Q ss_pred             HHH-----hc-C---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067          109 FEV-----LE-G---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY  179 (229)
Q Consensus       109 ~~~-----~~-~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~  179 (229)
                      ...     .. .   ....+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||++||+.+++.+.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~  154 (223)
T TIGR03771        75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE  154 (223)
T ss_pred             ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            421     00 0   11235678899999988899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          180 IIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       180 ~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ++.+++++|.|+|++||+++++.+++|.
T Consensus       155 ~l~~~~~~~~tvii~sH~~~~~~~~~d~  182 (223)
T TIGR03771       155 LFIELAGAGTAILMTTHDLAQAMATCDR  182 (223)
T ss_pred             HHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence            9999887799999999999999888763

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2e-43  Score=336.89  Aligned_cols=184  Identities=25%  Similarity=0.419  Sum_probs=160.3

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++||+++|+++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|++ |.++           .+
T Consensus       317 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~-----------~i  384 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL-----------EV  384 (635)
T ss_pred             CceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-----------EE
Confidence            45899999999999999999999999999999999999999999999999999999999998 4321           47


Q ss_pred             eEeeccc-ccCCCCCHHHhHHHHHHh---cCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKD-AVKEKFTVLDNVQWFEVL---EGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~-~~~~~~tv~e~l~~~~~~---~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|+. .+++.+||.||+.+....   ......+.+++..+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus       385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlL  464 (635)
T PRK11147        385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLIL  464 (635)
T ss_pred             EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            8999875 578889999999764211   11123456778889995 568999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.++++++   +.|||+||||.+++..+++
T Consensus       465 DEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~~~~~~~d  505 (635)
T PRK11147        465 DEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQFVDNTVT  505 (635)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHHHHHHhcC
Confidence            9999999999999999998776   4599999999999988775

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=1.6e-43  Score=333.73  Aligned_cols=190  Identities=25%  Similarity=0.403  Sum_probs=161.8

Q ss_pred             cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++++||+++|++   +.+|+|+||++++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++..... ..++.+
T Consensus       337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~-~~~~~~  415 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP-AELRAR  415 (576)
T ss_pred             eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH-HHHHHh
Confidence            5999999999964   579999999999999999999999999999999999999999999999999876543 346678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++... ...++..++++.+++.+..           ......||||||||++||||++.
T Consensus       416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~  493 (576)
T TIGR02204       416 MALVPQDPVLFAA-SVMENIRYGRPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILK  493 (576)
T ss_pred             ceEEccCCccccc-cHHHHHhcCCCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence            9999999988866 999999875321 1234455666666654332           34556899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++||||||||+||+.+++.+.+.+..+. +++|+|++||+++.+..
T Consensus       494 ~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~~~~~  540 (576)
T TIGR02204       494 DAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLK  540 (576)
T ss_pred             CCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchHHHHh
Confidence            999999999999999999999999998874 47999999999988764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-44  Score=323.27  Aligned_cols=191  Identities=29%  Similarity=0.437  Sum_probs=166.8

Q ss_pred             CcEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||+++|+.++ +|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|++||+++..... ...++-+
T Consensus       350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~-~SlR~~I  427 (591)
T KOG0057|consen  350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSL-ESLRQSI  427 (591)
T ss_pred             CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhCh-HHhhhhe
Confidence            4599999999998776 9999999999999999999999999999999999999 99999999999987653 4567889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +++||+..+|.+ |+..|+.++... ...+++.++.++.++.+.           ...+...|||||||||+||||++.+
T Consensus       428 g~VPQd~~LFnd-TIl~NI~YGn~s-as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKd  505 (591)
T KOG0057|consen  428 GVVPQDSVLFND-TILYNIKYGNPS-ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKD  505 (591)
T ss_pred             eEeCCcccccch-hHHHHhhcCCCC-cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcC
Confidence            999999988876 999999986532 234556677777777543           3456778999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |+|+++|||||+||.++...+.+.+.. ...++|+|+|-|+++.+.++
T Consensus       506 a~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~  552 (591)
T KOG0057|consen  506 APILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDF  552 (591)
T ss_pred             CCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcC
Confidence            999999999999999999988888877 45689999999999988875

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=1.4e-43  Score=338.35  Aligned_cols=189  Identities=25%  Similarity=0.354  Sum_probs=162.3

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC--ccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--AGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~--~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      .+|++++|+++.+|+|+|+++++||++||+|||||||||||++|+|..+|+  +|+|.++|+++..     ...++++|+
T Consensus        71 ~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~-----~~~~~i~yv  145 (659)
T PLN03211         71 ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK-----QILKRTGFV  145 (659)
T ss_pred             cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch-----hhccceEEE
Confidence            455666777888999999999999999999999999999999999999885  8999999998742     233568999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhc-----CCCCCCChhHHHHHHHHHHHhcCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAK-----EKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +|++.+++.+||+||+.+......    .    ...+.++++.+||.+..+     +.+.+|||||||||+||++|+.+|
T Consensus       146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P  225 (659)
T PLN03211        146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINP  225 (659)
T ss_pred             CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCC
Confidence            999999999999999988653321    1    123456888999977654     457789999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~  206 (229)
                      ++|+|||||+|||..++..+.+++++++++|+|||++||+++ ++.+.+|
T Consensus       226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D  275 (659)
T PLN03211        226 SLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFD  275 (659)
T ss_pred             CEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhc
Confidence            999999999999999999999999999878999999999998 4666654

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=3.1e-43  Score=332.77  Aligned_cols=190  Identities=22%  Similarity=0.330  Sum_probs=160.8

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..++..++
T Consensus       334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~  412 (585)
T TIGR01192       334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR-ESLRKSIA  412 (585)
T ss_pred             eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH-HHHHhheE
Confidence            5999999999975 679999999999999999999999999999999999999999999999999876543 34667899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-----------CCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----------GLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.++. .|++||+.++... ...++..++++..           |++....+.+..||||||||++|||||+.+|
T Consensus       413 ~v~q~~~lf~-~ti~~Ni~~~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p  490 (585)
T TIGR01192       413 TVFQDAGLFN-RSIRENIRLGREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA  490 (585)
T ss_pred             EEccCCccCc-ccHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            9999998886 5999999875321 1122333334333           3444455678899999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..
T Consensus       491 ~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~~~~  535 (585)
T TIGR01192       491 PILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLSTVRN  535 (585)
T ss_pred             CEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHHHHc
Confidence            9999999999999999999999998874 48999999999988865

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=332.40  Aligned_cols=195  Identities=26%  Similarity=0.366  Sum_probs=171.3

Q ss_pred             CcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh--
Q 027067            9 PRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ--   82 (229)
Q Consensus         9 ~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~--   82 (229)
                      ++|+++|++++|++    +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++........  
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~   82 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ   82 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence            48999999999953    579999999999999999999999999999999999999999999999999876442211  


Q ss_pred             -hhhcceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           83 -YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                       .++.++|++|++.+++.+|+.||+.+.....+     ...++.++++.+++.+..++.+.+||+||+||++|||||+.+
T Consensus        83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~  162 (648)
T PRK10535         83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG  162 (648)
T ss_pred             HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence             24579999999999999999999986543221     122456788999999889999999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++|||||||++||+.+++.+.+++++++++|.|+|++||+++.++.
T Consensus       163 P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~  209 (648)
T PRK10535        163 GQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQ  209 (648)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHh
Confidence            99999999999999999999999999987779999999999997754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.1e-43  Score=331.90  Aligned_cols=190  Identities=23%  Similarity=0.295  Sum_probs=161.9

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++|++++|++  +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++..+
T Consensus       313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~i  391 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL-DSWRSRL  391 (569)
T ss_pred             cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH-HHHHhhe
Confidence            5999999999964  579999999999999999999999999999999999999999999999999876543 3467789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++.. |++||+.++... ...++..++++.+++.++           .+.....||||||||++||||++.+
T Consensus       392 ~~v~q~~~lf~~-ti~~Ni~~~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~  469 (569)
T PRK10789        392 AVVSQTPFLFSD-TVANNIALGRPD-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN  469 (569)
T ss_pred             EEEccCCeeccc-cHHHHHhcCCCC-CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            999999998875 999999875321 123344556666655432           3455678999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++|||||||++||+.+.+.+.+.+.++. +++|+|++||+++.+..
T Consensus       470 ~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~~~~  515 (569)
T PRK10789        470 AEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSALTE  515 (569)
T ss_pred             CCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhHHHc
Confidence            99999999999999999999999998874 58999999999988765

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=5.6e-43  Score=336.83  Aligned_cols=191  Identities=25%  Similarity=0.387  Sum_probs=162.9

Q ss_pred             CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|+  ++++|+|+||+|++||.++|+|+||||||||+|+|+|+++|++|+|+++|.++...+. ..++..
T Consensus       454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~-~~~r~~  532 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP-AWLRRQ  532 (694)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH-HHHHHh
Confidence            3599999999995  3569999999999999999999999999999999999999999999999999977653 356778


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++.. ....++..++++..++.+           .......+||||||||++|||||+.
T Consensus       533 i~~v~q~~~lf~~-ti~eNi~~~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~  610 (694)
T TIGR01846       533 MGVVLQENVLFSR-SIRDNIALCNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVG  610 (694)
T ss_pred             CeEEccCCeehhh-hHHHHHhcCCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999988875 99999987432 112334455566555543           3345577999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+.+.++. +++|+|++||+++.+..
T Consensus       611 ~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~  657 (694)
T TIGR01846       611 NPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLSTVRA  657 (694)
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHHHHh
Confidence            999999999999999999999999998874 57999999999998866

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-43  Score=298.28  Aligned_cols=165  Identities=31%  Similarity=0.450  Sum_probs=147.4

Q ss_pred             CcEEEEeEEEEeCC---------eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067            9 PRLLLKNVSCMRNA---------QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---------~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~   79 (229)
                      ++++++||++.|..         ..+++||||+|++||++||+|+||||||||-|+|.|+++|++|+|+|+|+++.... 
T Consensus         3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-   81 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-   81 (268)
T ss_pred             ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-
Confidence            57999999999842         37999999999999999999999999999999999999999999999999865421 


Q ss_pred             hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           80 FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                                                      .....+++.+.|+.+|+. +..+++|++|||||+|||.|||||+.+|+
T Consensus        82 --------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~  129 (268)
T COG4608          82 --------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPK  129 (268)
T ss_pred             --------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCc
Confidence                                            001123577899999996 57899999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++++|||+|+||...+..+.+++.+++++ |.|.+++|||++.+...+|
T Consensus       130 liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd  178 (268)
T COG4608         130 LIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD  178 (268)
T ss_pred             EEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence            99999999999999999999999998765 8999999999999998876

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-42  Score=331.80  Aligned_cols=184  Identities=26%  Similarity=0.378  Sum_probs=157.1

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++|+++||++.|+++.+|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|++++.            ..
T Consensus       309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~  376 (638)
T PRK10636        309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IK  376 (638)
T ss_pred             CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EE
Confidence            346899999999999999999999999999999999999999999999999999999999998631            14


Q ss_pred             ceEeeccc--ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           87 LNWLSLKD--AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        87 ~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      ++|++|+.  .+.+..++.+++..... ......+.+++..+++. +..++++.+|||||||||+||++|+.+|++||||
T Consensus       377 igy~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD  455 (638)
T PRK10636        377 LGYFAQHQLEFLRADESPLQHLARLAP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD  455 (638)
T ss_pred             EEEecCcchhhCCccchHHHHHHHhCc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            78888863  34455677776532110 11223467889999996 4789999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.++|.++   +.|||+||||++++..++|
T Consensus       456 EPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~~~~~~~d  495 (638)
T PRK10636        456 EPTNHLDLDMRQALTEALIDF---EGALVVVSHDRHLLRSTTD  495 (638)
T ss_pred             CCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHHHHHHhCC
Confidence            999999999999999999887   3499999999999998775

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=1.2e-42  Score=326.47  Aligned_cols=187  Identities=26%  Similarity=0.296  Sum_probs=157.1

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ..++.+++
T Consensus       322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~  400 (547)
T PRK10522        322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP-EDYRKLFS  400 (547)
T ss_pred             eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH-HHHhhheE
Confidence            5999999999964 579999999999999999999999999999999999999999999999999876543 34677899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----CCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----KARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++. |+.+|-   .  ....+...++++.+++....+.     ...+||||||||++||||++.+|++||||
T Consensus       401 ~v~q~~~lf~~-ti~~n~---~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililD  474 (547)
T PRK10522        401 AVFTDFHLFDQ-LLGPEG---K--PANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLD  474 (547)
T ss_pred             EEecChhHHHH-hhcccc---C--chHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            99999887765 777761   0  1122345677888888755432     14689999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHh
Q 027067          164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~  203 (229)
                      |||++||+++.+.+.+.+.+. ++.++|+|++||+++.+..
T Consensus       475 E~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~  515 (547)
T PRK10522        475 EWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH  515 (547)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh
Confidence            999999999999888877654 3458999999999877654

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=1.2e-42  Score=326.90  Aligned_cols=188  Identities=24%  Similarity=0.341  Sum_probs=158.8

Q ss_pred             CcEEEEeEEEEeCCe-----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhh
Q 027067            9 PRLLLKNVSCMRNAQ-----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY   83 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~-----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~   83 (229)
                      ..++++||+++|+++     ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~-~~~  414 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR-DDY  414 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH-HHH
Confidence            359999999999752     59999999999999999999999999999999999999999999999999976543 346


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCC------CCCCChhHHHHHHHHHHHhcCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEK------ARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~------~~~LSgGqkqRv~lAral~~~p  157 (229)
                      +..+++++|++.++.. |+.+|..    ....+++..++++.+++.+..++.      ...||||||||++||||++.+|
T Consensus       415 ~~~i~~v~q~~~lf~~-ti~~n~~----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~  489 (555)
T TIGR01194       415 RDLFSAIFADFHLFDD-LIGPDEG----EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDR  489 (555)
T ss_pred             HhhCcEEccChhhhhh-hhhcccc----cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCC
Confidence            6789999999888765 7778742    111234567789999998766543      3579999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHH
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~  202 (229)
                      ++|||||||++||+.+++.+.+.+ +.++..++|+|++||+++.++
T Consensus       490 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~  535 (555)
T TIGR01194       490 PILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE  535 (555)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence            999999999999999999887654 455566899999999997665

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=4.1e-43  Score=357.77  Aligned_cols=192  Identities=22%  Similarity=0.367  Sum_probs=166.3

Q ss_pred             cEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC------------------------
Q 027067           10 RLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP------------------------   62 (229)
Q Consensus        10 ~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p------------------------   62 (229)
                      .++++||+|+|+   ++++|+|+||+|++|+++||+||||||||||+++|+|+++|                        
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred             eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence            599999999995   35799999999999999999999999999999999999998                        


Q ss_pred             ------------------------------CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067           63 ------------------------------SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL  112 (229)
Q Consensus        63 ------------------------------~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  112 (229)
                                                    ++|+|++||.++..... ..++.+++|++|++.+|. .|++|||.++.. 
T Consensus      1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~-~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~- 1321 (1466)
T PTZ00265       1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL-KDLRNLFSIVSQEPMLFN-MSIYENIKFGKE- 1321 (1466)
T ss_pred             ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH-HHHHhhccEeCCCCcccc-ccHHHHHhcCCC-
Confidence                                          69999999999987653 457789999999999885 599999998632 


Q ss_pred             cCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 027067          113 EGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII  181 (229)
Q Consensus       113 ~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l  181 (229)
                      ....+++.++++..++.++.           ..+...||||||||++|||||+++|+|||||||||+||.++.+.+.+.+
T Consensus      1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265       1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            12334566777777665543           3456789999999999999999999999999999999999999999999


Q ss_pred             HHHH-hCCcEEEEEeCChhhHHhh
Q 027067          182 AEHR-KKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       182 ~~~~-~~g~tii~vtH~~~~~~~~  204 (229)
                      ..+. .+++|+|+|||+++.++.+
T Consensus      1402 ~~~~~~~~~TvIiIaHRlsti~~a 1425 (1466)
T PTZ00265       1402 VDIKDKADKTIITIAHRIASIKRS 1425 (1466)
T ss_pred             HHHhccCCCEEEEEechHHHHHhC
Confidence            8875 3589999999999998875

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-43  Score=343.16  Aligned_cols=192  Identities=29%  Similarity=0.441  Sum_probs=163.2

Q ss_pred             CcEEEEeEEEEeCCe---eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNAQ---QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~---~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+|+|+.+   ++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|++||.++..... +..+.
T Consensus       349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~-~~lr~  427 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL-KWLRS  427 (1228)
T ss_pred             cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch-HHHHh
Confidence            469999999999754   59999999999999999999999999999999999999999999999999987653 45678


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhC-----------CChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      ++|.|+|+|.+| ..|++||+.++... ....+..++.+..+           ++.....+..+|||||||||+|||||+
T Consensus       428 ~iglV~QePvlF-~~tI~eNI~~G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv  505 (1228)
T KOG0055|consen  428 QIGLVSQEPVLF-ATTIRENIRYGKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV  505 (1228)
T ss_pred             hcCeeeechhhh-cccHHHHHhcCCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence            999999999665 55999999986432 12233444444433           333344566789999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .+|+|||||||||+||++++..+.+.|.... .|+|.|+|+|+++.+..+
T Consensus       506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLStIrna  554 (1228)
T KOG0055|consen  506 RNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLSTIRNA  554 (1228)
T ss_pred             hCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhhhhcc
Confidence            9999999999999999999999999998875 588999999999999884

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=5.6e-43  Score=282.68  Aligned_cols=197  Identities=26%  Similarity=0.343  Sum_probs=178.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC-EeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG-HDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g-~~~~~~~~~~~~~~~~   87 (229)
                      +.|+++||+++|++..+|+++||++.+||.-+|+|||||||||++.+|+|-.+|++|+|+++| .+++..+..+..+..|
T Consensus         4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI   83 (249)
T COG4674           4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI   83 (249)
T ss_pred             ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence            579999999999999999999999999999999999999999999999999999999999999 8898877666678889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHH--------hc-C----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEV--------LE-G----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~--------~~-~----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      |--+|.|.+|+.+||+||+.+...        +. +    ..+++.+.|+..||.+..++....||.||||++.|++.++
T Consensus        84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~  163 (249)
T COG4674          84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA  163 (249)
T ss_pred             CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence            999999999999999999975321        11 1    1235778999999999999999999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|++|++|||++|+-....+...++++.++. +++|++|.||+.++....+
T Consensus       164 Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~Fvr~~A~  214 (249)
T COG4674         164 QDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMGFVREIAD  214 (249)
T ss_pred             cCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHHHHHHhhh
Confidence            99999999999999999999999999999864 6799999999999998763

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-43  Score=319.28  Aligned_cols=191  Identities=34%  Similarity=0.483  Sum_probs=166.4

Q ss_pred             cEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++||+|+|.+.  ++|+|+||++++||.+||+|++|||||||+++|+|.++|++|+|+++|.++...+. +..+..+
T Consensus       336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~-~~~~e~i  414 (573)
T COG4987         336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QALRETI  414 (573)
T ss_pred             eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh-hhHHHHH
Confidence            69999999999764  59999999999999999999999999999999999999999999999999876543 2356778


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      ++++|...+|.. |+++|+.+.... ...++..++++.+||.++.           +.....|||||+||++|||+|+++
T Consensus       415 ~vl~Qr~hlF~~-Tlr~NL~lA~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d  492 (573)
T COG4987         415 SVLTQRVHLFSG-TLRDNLRLANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD  492 (573)
T ss_pred             hhhccchHHHHH-HHHHHHhhcCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence            999999998876 999999875432 2345677888888886554           345689999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .+++||||||.|||+.+.+.+.+.+.+.. +|+|+|+|||++..++.+
T Consensus       493 apl~lLDEPTegLD~~TE~~vL~ll~~~~-~~kTll~vTHrL~~le~~  539 (573)
T COG4987         493 APLWLLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGLERM  539 (573)
T ss_pred             CCeEEecCCcccCChhhHHHHHHHHHHHh-cCCeEEEEecccccHhhc
Confidence            99999999999999999999999888764 489999999999888775

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=4.2e-42  Score=298.36  Aligned_cols=175  Identities=25%  Similarity=0.322  Sum_probs=143.8

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+.|+++|+++.  ++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|              .+
T Consensus        37 ~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--------------~i  100 (282)
T cd03291          37 DNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--------------RI  100 (282)
T ss_pred             CCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------EE
Confidence            357999999985  46799999999999999999999999999999999999999999999987              27


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-----------hcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-----------AKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++. |+.||+.+....  ......+.++.+++.+.           .++.+.+||+|||||++|||||+.+
T Consensus       101 ~yv~q~~~l~~~-tv~enl~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~  177 (282)
T cd03291         101 SFSSQFSWIMPG-TIKENIIFGVSY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKD  177 (282)
T ss_pred             EEEeCccccccc-CHHHHhhccccc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence            889998887775 999998764211  11122334444555332           2344679999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHH
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |++|||||||++||+.+++.+.+. +..++ ++.|||++||+++.+.
T Consensus       178 p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~~~  223 (282)
T cd03291         178 ADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEHLK  223 (282)
T ss_pred             CCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHHHH
Confidence            999999999999999999988775 45554 4789999999999875

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.4e-43  Score=297.18  Aligned_cols=188  Identities=20%  Similarity=0.319  Sum_probs=163.1

Q ss_pred             EEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc---hhhhhhhcceEeec
Q 027067           16 VSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG---IFHQYKLQLNWLSL   92 (229)
Q Consensus        16 l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~---~~~~~~~~~~~~~~   92 (229)
                      +.+++|+..+  +++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.++|+.+....   .....++++||++|
T Consensus         6 ~~~~lG~~~l--~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ   83 (352)
T COG4148           6 FRQRLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ   83 (352)
T ss_pred             hhhhcCceEE--EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence            4445565544  789999886899999999999999999999999999999999998765321   11235678999999


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      +..+|+++||+.|+.|+.... ......++...+|++++++++|.+|||||||||+|+|||+..|++|+||||.++||..
T Consensus        84 DARLFpH~tVrgNL~YG~~~~-~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~  162 (352)
T COG4148          84 DARLFPHYTVRGNLRYGMWKS-MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLP  162 (352)
T ss_pred             ccccccceEEecchhhhhccc-chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccc
Confidence            999999999999999875432 2345677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          173 GVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      .+.++.-+++.++++ +..|++|||.++++....|
T Consensus       163 RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd  197 (352)
T COG4148         163 RKREILPYLERLRDEINIPILYVSHSLDEVLRLAD  197 (352)
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhh
Confidence            999999999998765 7889999999999988764

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.1e-42  Score=327.84  Aligned_cols=193  Identities=23%  Similarity=0.283  Sum_probs=145.9

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC----CCCchhhhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI----TQSGIFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~----~~~~~~~~~~~   85 (229)
                      ||+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|+++|...    .+... .....
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~-~~~~~   79 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETP-ALPQP   79 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC-CCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999987420    00000 00011


Q ss_pred             cceEeecccccCCCCCHHHh--------HHHH---HHhc-----CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067           86 QLNWLSLKDAVKEKFTVLDN--------VQWF---EVLE-----GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~--------l~~~---~~~~-----~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~  148 (229)
                      .++|+++....+..+++...        ..+.   ....     ....++.++++.+|+. +..++++.+|||||||||+
T Consensus        80 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~  159 (638)
T PRK10636         80 ALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLN  159 (638)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHH
Confidence            12233222111111111000        0000   0000     0123466789999996 5789999999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+||+.+|++|||||||++||+.+++++.+++..+   +.|||+||||.+++..+++
T Consensus       160 LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~~l~~~~d  214 (638)
T PRK10636        160 LAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRDFLDPIVD  214 (638)
T ss_pred             HHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHhcC
Confidence            999999999999999999999999999999988765   5699999999999998875

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=6.3e-42  Score=269.69  Aligned_cols=135  Identities=32%  Similarity=0.573  Sum_probs=124.7

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++|++++|++.++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|+            ..++|+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~~i~~~   68 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------VKIGYF   68 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------EEEEEE
Confidence            47899999998888999999999999999999999999999999999999999999999884            246676


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      +|                                              ||+||+||++|||||+.+|+++||||||++||
T Consensus        69 ~~----------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD  102 (144)
T cd03221          69 EQ----------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLD  102 (144)
T ss_pred             cc----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCC
Confidence            65                                              99999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.++..+.+.++++   +.|+|++||+++++...+|
T Consensus       103 ~~~~~~l~~~l~~~---~~til~~th~~~~~~~~~d  135 (144)
T cd03221         103 LESIEALEEALKEY---PGTVILVSHDRYFLDQVAT  135 (144)
T ss_pred             HHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence            99999999998876   4799999999999887665

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=3.9e-42  Score=304.17  Aligned_cols=163  Identities=32%  Similarity=0.423  Sum_probs=143.8

Q ss_pred             EEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----
Q 027067           41 LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----  115 (229)
Q Consensus        41 iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----  115 (229)
                      |+||||||||||+|+|+|+++|++|+|+++|+++.....   .++.++|++|++.+++.+|+.||+.+.....+.     
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~---~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~   77 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP---HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEI   77 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHH
Confidence            689999999999999999999999999999999865332   345799999999999999999999886433221     


Q ss_pred             cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE
Q 027067          116 QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVA  194 (229)
Q Consensus       116 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~v  194 (229)
                      ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.++.++ |.|+|+|
T Consensus        78 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiiv  157 (325)
T TIGR01187        78 KPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFV  157 (325)
T ss_pred             HHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            124567899999999999999999999999999999999999999999999999999999999999998654 8999999


Q ss_pred             eCChhhHHhhhc
Q 027067          195 THLPIQIEDAMN  206 (229)
Q Consensus       195 tH~~~~~~~~~~  206 (229)
                      |||++++...+|
T Consensus       158 THd~~e~~~~~d  169 (325)
T TIGR01187       158 THDQEEAMTMSD  169 (325)
T ss_pred             eCCHHHHHHhCC
Confidence            999999888765

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=3.7e-42  Score=350.74  Aligned_cols=192  Identities=21%  Similarity=0.378  Sum_probs=163.3

Q ss_pred             cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE-cCEeCCCCchhhhhhh
Q 027067           10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW-NGHDITQSGIFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~-~g~~~~~~~~~~~~~~   85 (229)
                      .|+++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++..... ..++.
T Consensus       382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~-~~lr~  460 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL-KWWRS  460 (1466)
T ss_pred             cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH-HHHHH
Confidence            5999999999974   36999999999999999999999999999999999999999999999 5687765443 34577


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHh-----------------------------------------------------
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVL-----------------------------------------------------  112 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~-----------------------------------------------------  112 (229)
                      +++|++|++.+++. |++||+.++...                                                     
T Consensus       461 ~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  539 (1466)
T PTZ00265        461 KIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRK  539 (1466)
T ss_pred             hccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhccc
Confidence            89999999998875 999999874210                                                     


Q ss_pred             ---cCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHH
Q 027067          113 ---EGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE  178 (229)
Q Consensus       113 ---~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~  178 (229)
                         ....+++.++++.+++.++.           .+.+.+||||||||++|||||+.+|+||||||||++||+.+++.+.
T Consensus       540 ~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~  619 (1466)
T PTZ00265        540 NYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ  619 (1466)
T ss_pred             ccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence               00112355677777776553           4668899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067          179 YIIAEHRK-KGGIVIVATHLPIQIED  203 (229)
Q Consensus       179 ~~l~~~~~-~g~tii~vtH~~~~~~~  203 (229)
                      +.++++++ +|+|+|+|||+++.+..
T Consensus       620 ~~L~~~~~~~g~TvIiIsHrls~i~~  645 (1466)
T PTZ00265        620 KTINNLKGNENRITIIIAHRLSTIRY  645 (1466)
T ss_pred             HHHHHHhhcCCCEEEEEeCCHHHHHh
Confidence            99999865 58999999999998854

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=1.2e-41  Score=276.81  Aligned_cols=136  Identities=23%  Similarity=0.311  Sum_probs=123.4

Q ss_pred             EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecc
Q 027067           14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK   93 (229)
Q Consensus        14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~   93 (229)
                      .||+++|+++++++++ |+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+             ++|++|.
T Consensus         4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q~   69 (177)
T cd03222           4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQY   69 (177)
T ss_pred             CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEccc
Confidence            6899999999999985 9999999999999999999999999999999999999998853             3455543


Q ss_pred             cccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 027067           94 DAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG  173 (229)
Q Consensus        94 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~  173 (229)
                      ..                                           ||||||||++||||++.+|+++||||||++||+.+
T Consensus        70 ~~-------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~  106 (177)
T cd03222          70 ID-------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ  106 (177)
T ss_pred             CC-------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence            21                                           99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC-cEEEEEeCChhhHHhhhc
Q 027067          174 VRLLEYIIAEHRKKG-GIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       174 ~~~l~~~l~~~~~~g-~tii~vtH~~~~~~~~~~  206 (229)
                      ++.+.+.+.++++++ .|||++||+++++...+|
T Consensus       107 ~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d  140 (177)
T cd03222         107 RLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSD  140 (177)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCC
Confidence            999999999987665 899999999999988765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=8.5e-42  Score=349.73  Aligned_cols=191  Identities=24%  Similarity=0.307  Sum_probs=166.5

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|..  +++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...+.+
T Consensus      1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~-~~lR~~ 1311 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL-TDLRRV 1311 (1495)
T ss_pred             CcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH-HHHHhh
Confidence            35999999999953  579999999999999999999999999999999999999999999999999987654 457789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++++||++.+|+. |++||+.++.  ...++++.++++.+++.++.           ......||||||||++|||||++
T Consensus      1312 i~iVpQdp~LF~g-TIr~NL~~~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr 1388 (1495)
T PLN03232       1312 LSIIPQSPVLFSG-TVRFNIDPFS--EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLR 1388 (1495)
T ss_pred             cEEECCCCeeeCc-cHHHHcCCCC--CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999876 9999997643  12334566777777775543           34456899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus      1389 ~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232       1389 RSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhC
Confidence            999999999999999999999999998763 479999999999999885

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=1.1e-41  Score=349.95  Aligned_cols=191  Identities=25%  Similarity=0.318  Sum_probs=167.0

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..|+++||+++|.+  .++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+. ...+.+
T Consensus      1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l-~~LR~~ 1314 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL-MDLRKV 1314 (1622)
T ss_pred             CcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH-HHHHhc
Confidence            36999999999964  479999999999999999999999999999999999999999999999999987654 457789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++++||++.+|.. |++||+..+..  ..++++.++++.+++.++.           ......||||||||++|||||++
T Consensus      1315 IsiVpQdp~LF~G-TIreNLd~~~~--~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr 1391 (1622)
T PLN03130       1315 LGIIPQAPVLFSG-TVRFNLDPFNE--HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLR 1391 (1622)
T ss_pred             cEEECCCCccccc-cHHHHhCcCCC--CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHc
Confidence            9999999999876 99999976531  2344567777777765443           33456899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus      1392 ~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130       1392 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHHHHhC
Confidence            999999999999999999999999998864 479999999999999885

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=1.4e-41  Score=283.94  Aligned_cols=168  Identities=20%  Similarity=0.261  Sum_probs=138.6

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-EcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      ++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|. ++|..+.              +.+.+.+++.+|+
T Consensus         1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~--------------~~~~~~l~~~ltv   66 (213)
T PRK15177          1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP--------------LGANSFILPGLTG   66 (213)
T ss_pred             CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec--------------cccccccCCcCcH
Confidence            379999999999999999999999999999999999999999997 7664321              1123457788999


Q ss_pred             HHhHHHHHHhcCc-ccc-HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067          103 LDNVQWFEVLEGK-QGN-SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI  180 (229)
Q Consensus       103 ~e~l~~~~~~~~~-~~~-~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~  180 (229)
                      .||+.+....... ..+ ...+.+.+++....++++.+||+|||||++||||++.+|+++||||||+++|+.+++.+.+.
T Consensus        67 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~  146 (213)
T PRK15177         67 EENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAA  146 (213)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHH
Confidence            9999876543322 111 22334567888888999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          181 IAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       181 l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+..+ +.|+|++||+++++...+|
T Consensus       147 l~~~~~-~~~ii~vsH~~~~~~~~~d  171 (213)
T PRK15177        147 LACQLQ-QKGLIVLTHNPRLIKEHCH  171 (213)
T ss_pred             HHHHhh-CCcEEEEECCHHHHHHhcC
Confidence            755433 4679999999999988776

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.3e-41  Score=315.78  Aligned_cols=182  Identities=30%  Similarity=0.401  Sum_probs=157.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+|+++|++++|+++++++++||+|.+|+++||||+||||||||||+|+|...|++|+|...+.            ..++
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~------------~~v~   69 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG------------LRVG   69 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC------------ceEE
Confidence            4799999999999999999999999999999999999999999999999999999999987431            2579


Q ss_pred             EeecccccCCCCCHHHhHHHHHH-----------hc------------------------CccccHHHHHHHhCCChhhc
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEV-----------LE------------------------GKQGNSLPALELMGLGRLAK  133 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~-----------~~------------------------~~~~~~~~~l~~~~l~~~~~  133 (229)
                      |++|++.+.+..||.+.+.....           ..                        ..+.++..++.-+|+... +
T Consensus        70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~  148 (530)
T COG0488          70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D  148 (530)
T ss_pred             EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence            99999999988899887642110           00                        001234456777788766 9


Q ss_pred             CCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          134 EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       134 ~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++++||||||.||+||+||..+|++||||||||+||..+..++.+.|..+.  | |+|+||||-.++..+|+
T Consensus       149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~--g-tviiVSHDR~FLd~V~t  218 (530)
T COG0488         149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP--G-TVIVVSHDRYFLDNVAT  218 (530)
T ss_pred             CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC--C-cEEEEeCCHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999998653  5 99999999999999985

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=1.6e-41  Score=324.74  Aligned_cols=179  Identities=18%  Similarity=0.271  Sum_probs=153.5

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+++++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++            +.++
T Consensus       450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~------------~~~i  517 (659)
T TIGR00954       450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA------------KGKL  517 (659)
T ss_pred             CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC------------CCcE
Confidence            4699999999995 56899999999999999999999999999999999999999999998753            2368


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHh-----c-CccccHHHHHHHhCCChhhcCCC---------CCCChhHHHHHHHHHH
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVL-----E-GKQGNSLPALELMGLGRLAKEKA---------RMLSMGQRKRLQLARL  152 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~-----~-~~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAra  152 (229)
                      +|++|++.+++. |++||+.+....     . ...++..++++.+++.++.+++.         .+||||||||++||||
T Consensus       518 ~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       518 FYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             EEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            999999988877 999999864211     1 12234567899999987766543         7999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |+.+|+++||||||++||+.+++.+.+.+++   .|.|+|++||+++.+..
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~  644 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKY  644 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHh
Confidence            9999999999999999999999998888765   38999999999987643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.4e-41  Score=277.16  Aligned_cols=196  Identities=24%  Similarity=0.328  Sum_probs=175.2

Q ss_pred             CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      .+|+++||+++..++ .+|++|||+|++||+.+|+||||||||||.++|+|.-  ++++|+|.++|+++...++..+.+.
T Consensus         2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~   81 (251)
T COG0396           2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA   81 (251)
T ss_pred             ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence            479999999999985 9999999999999999999999999999999999984  7899999999999999888788888


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcC--------ccccHHHHHHHhCCCh-hhcCCCC-CCChhHHHHHHHHHHHhc
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG--------KQGNSLPALELMGLGR-LAKEKAR-MLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~--------~~~~~~~~l~~~~l~~-~~~~~~~-~LSgGqkqRv~lAral~~  155 (229)
                      .+...+|.|.-++..++.+.+........        .....++.++.+++.+ +++|+++ .+|||||+|..|+.+++.
T Consensus        82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~l  161 (251)
T COG0396          82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLL  161 (251)
T ss_pred             CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhc
Confidence            99999999999999999998876543211        1234567889999975 7889886 799999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|++.|||||-||||..+-+.+.+.++.+++.|.+++++||....+...
T Consensus       162 ePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i  210 (251)
T COG0396         162 EPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI  210 (251)
T ss_pred             CCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence            9999999999999999999999999999999999999999987666553

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=1.1e-40  Score=265.56  Aligned_cols=147  Identities=37%  Similarity=0.581  Sum_probs=133.7

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      ++|++++|.++.+++++||+|++|++++|+|+||||||||+++|+|+++|++|+|+++|.++..... .+....++|++|
T Consensus         2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~-~~~~~~i~~~~q   80 (157)
T cd00267           2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL-EELRRRIGYVPQ   80 (157)
T ss_pred             eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH-HHHHhceEEEee
Confidence            6899999988899999999999999999999999999999999999999999999999988754321 234456777776


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                                                                    ||+||+||++||||++.+|++++|||||++||..
T Consensus        81 ----------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~  114 (157)
T cd00267          81 ----------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPA  114 (157)
T ss_pred             ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence                                                          9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++..+.+.+.++++.+.|+|++||+++++..++|
T Consensus       115 ~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d  148 (157)
T cd00267         115 SRERLLELLRELAEEGRTVIIVTHDPELAELAAD  148 (157)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999987767899999999999998766

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=4.3e-41  Score=320.86  Aligned_cols=191  Identities=22%  Similarity=0.254  Sum_probs=143.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-CCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~~~~~~~~~~~~   88 (229)
                      +|+++||+++|+++++|+||||+|++|+++||+||||||||||||+|+|+++|++|+|.++|... ...... ......+
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~-~~~~~~~   81 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQD-PPRNVEG   81 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccC-CCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999987311 000000 0000011


Q ss_pred             Eeecccc-----cC-------------CCCCHHHhHHHHHHh----c-----CccccHHHHHHHhCCChhhcCCCCCCCh
Q 027067           89 WLSLKDA-----VK-------------EKFTVLDNVQWFEVL----E-----GKQGNSLPALELMGLGRLAKEKARMLSM  141 (229)
Q Consensus        89 ~~~~~~~-----~~-------------~~~tv~e~l~~~~~~----~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSg  141 (229)
                      ++++...     +.             ..-++.+++......    .     ....++.++++.+|+.  .++++.+|||
T Consensus        82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~~LSg  159 (635)
T PRK11147         82 TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALSSLSG  159 (635)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchhhcCH
Confidence            1111000     00             000122333221111    0     1123466788999996  3889999999


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||||+.+|++|||||||++||+.+++++.++|..+.   .|||+||||..++..++|
T Consensus       160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsHd~~~l~~~~d  221 (635)
T PRK11147        160 GWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISHDRSFIRNMAT  221 (635)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeCCHHHHHHhcC
Confidence            99999999999999999999999999999999999999998773   599999999999988775

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=6.1e-41  Score=341.13  Aligned_cols=188  Identities=22%  Similarity=0.329  Sum_probs=166.3

Q ss_pred             CcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEEcCEeCCCCchhh
Q 027067            9 PRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK---PSAGEILWNGHDITQSGIFH   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   81 (229)
                      .+++++||++.|+    ++.+|+|||+++++||++||+|||||||||||++|+|+.+   |++|+|+++|+++..     
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-----  832 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-----  832 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-----
Confidence            3589999999984    4679999999999999999999999999999999999997   788999999998742     


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhcCCCC----CCChhHHHHHHH
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAKEKAR----MLSMGQRKRLQL  149 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~~~~~----~LSgGqkqRv~l  149 (229)
                      ..++.++|++|++.+++.+||+||+.+....+.    .    .+.+.++++.+++.+..++.++    .|||||||||+|
T Consensus       833 ~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~I  912 (1394)
T TIGR00956       833 SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTI  912 (1394)
T ss_pred             hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHH
Confidence            245679999999888999999999998654331    1    1235678999999988888887    799999999999


Q ss_pred             HHHHhcCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          150 ARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       150 Aral~~~p~-illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      |++|+.+|+ +|+|||||+|||..++..+.+.+++++++|+|||++||+++..
T Consensus       913 a~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~  965 (1394)
T TIGR00956       913 GVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAI  965 (1394)
T ss_pred             HHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHH
Confidence            999999997 9999999999999999999999999988899999999999863

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.8e-42  Score=265.61  Aligned_cols=190  Identities=29%  Similarity=0.322  Sum_probs=168.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ++.++||+.+.++...|.++||+|.+||++.|+||||||||||+.-+.|.+.++   +|+++++++++...+   ..+++
T Consensus         2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP---a~qRq   78 (213)
T COG4136           2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP---AAQRQ   78 (213)
T ss_pred             ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc---hhhhh
Confidence            689999999999999999999999999999999999999999999999999875   799999999987653   35678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHH--hcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEV--LEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~--~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|.++|++-+|+.++|.+|+.|...  ..+  ....+..++++.|+....++.|.+||||||-||++-|+|+.+|+.++|
T Consensus        79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLL  158 (213)
T COG4136          79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLL  158 (213)
T ss_pred             eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeee
Confidence            9999999999999999999987432  222  123466789999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHH
Q 027067          163 DEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |||||.||..-+..+.+.. .+.++.|..+|+||||..++.
T Consensus       159 DEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         159 DEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            9999999999888887755 446777999999999987765

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1e-40  Score=320.64  Aligned_cols=182  Identities=24%  Similarity=0.347  Sum_probs=151.9

Q ss_pred             CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++|+++||++.|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|++++.            ..
T Consensus       506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~------------~~  573 (718)
T PLN03073        506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK------------VR  573 (718)
T ss_pred             CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc------------ee
Confidence            36899999999996 457999999999999999999999999999999999999999999998541            25


Q ss_pred             ceEeecccccCCCCCHHHhHHHHH-H-hc-CccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFE-V-LE-GKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~-~-~~-~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ++|++|+.  ...+++.++..+.. . .. .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus       574 igyv~Q~~--~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL  651 (718)
T PLN03073        574 MAVFSQHH--VDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL  651 (718)
T ss_pred             EEEEeccc--cccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence            78998864  23445555533221 1 11 1234567889999997 467999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.+.+..+   +.|||+||||++++..++|
T Consensus       652 DEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~~i~~~~d  692 (718)
T PLN03073        652 DEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEHLISGSVD  692 (718)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence            9999999999999888877664   3499999999999998775

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=8.2e-41  Score=342.87  Aligned_cols=190  Identities=26%  Similarity=0.329  Sum_probs=165.8

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .|+++||+++|.+  .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++...+. ...+.++
T Consensus      1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l-~~LR~~I 1386 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL-RELRRQF 1386 (1560)
T ss_pred             eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH-HHHHhcc
Confidence            5999999999954  459999999999999999999999999999999999999999999999999987654 4577899


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +++||++.+|.. |+++|+..+.  ....+++.++++.+++.++..           ....+||||||||++|||||+++
T Consensus      1387 ~iVpQdp~LF~g-TIreNIdp~~--~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243       1387 SMIPQDPVLFDG-TVRQNVDPFL--EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred             eEECCCCccccc-cHHHHhCccc--CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence            999999999876 9999996532  123456778888888865532           34568999999999999999996


Q ss_pred             -CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 -RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 -p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                       |+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus      1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~ti~~~ 1511 (1560)
T PTZ00243       1464 GSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHTVAQY 1511 (1560)
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHHHHhC
Confidence             89999999999999999999999998753 479999999999998774

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.1e-41  Score=330.79  Aligned_cols=191  Identities=28%  Similarity=0.414  Sum_probs=168.5

Q ss_pred             cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++++||+|.|+.   .++|+|+||++++|+.+||||||||||||.+.+|-.+|.|++|.|.+||+++...+. ...|.+
T Consensus       987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl-~~LR~~ 1065 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL-KWLRKQ 1065 (1228)
T ss_pred             EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCH-HHHHHh
Confidence            5999999999964   569999999999999999999999999999999999999999999999999988764 457889


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++.|.|+|.+|.. |++|||.|+.. .-.++++.++++..+..+           ....+..+||||||||+|||||+++
T Consensus      1066 i~lVsQEP~LF~~-TIrENI~YG~~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1066 IGLVSQEPVLFNG-TIRENIAYGSE-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred             cceeccCchhhcc-cHHHHHhccCC-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence            9999999999866 99999999821 124456667777655443           3356678999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ||+||||||.||+||.++.+.+.+.|.... .|+|.|+|+|+++.++++
T Consensus      1144 nPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLSTIqna 1191 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLSTIQNA 1191 (1228)
T ss_pred             CCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhhhhcC
Confidence            999999999999999999999999999875 489999999999999986

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=8.5e-41  Score=342.82  Aligned_cols=191  Identities=27%  Similarity=0.385  Sum_probs=166.1

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|..  .++|+||||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.|+...+. ...+.+
T Consensus      1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~-~~LR~~ 1361 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL-HDLRFK 1361 (1522)
T ss_pred             CcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH-HHHHhc
Confidence            46999999999964  479999999999999999999999999999999999999999999999999987764 457789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++++||++.+|.. |+++|+..+.  ...+++..++++.+++.++.           ......||||||||++|||||++
T Consensus      1362 i~iVpQdp~LF~g-TIr~NLdp~~--~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr 1438 (1522)
T TIGR00957      1362 ITIIPQDPVLFSG-SLRMNLDPFS--QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLR 1438 (1522)
T ss_pred             CeEECCCCcccCc-cHHHHcCccc--CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHc
Confidence            9999999999987 9999997432  12344566778877765443           34457899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||.++.+.+.+.+++.. +++|+|+|+|+++.+.++
T Consensus      1439 ~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~ti~~~ 1486 (1522)
T TIGR00957      1439 KTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNTIMDY 1486 (1522)
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhC
Confidence            999999999999999999999999998753 479999999999998885

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2e-41  Score=319.98  Aligned_cols=185  Identities=20%  Similarity=0.244  Sum_probs=152.9

Q ss_pred             eEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCch-hh
Q 027067           15 NVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGI-FH   81 (229)
Q Consensus        15 ~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~-~~   81 (229)
                      +++++|+++ .+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.           ++|+++..... ..
T Consensus        78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~  156 (590)
T PRK13409         78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY  156 (590)
T ss_pred             CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence            378899874 6999999 9999999999999999999999999999999999997           88887643110 00


Q ss_pred             hhhhcceEeec----ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           82 QYKLQLNWLSL----KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        82 ~~~~~~~~~~~----~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      .....+++.+|    .+.++. .||.|++.+..    ....+.++++.+++.+..++++.+|||||||||+||+||+.+|
T Consensus       157 ~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p  231 (590)
T PRK13409        157 NGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVD----ERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDA  231 (590)
T ss_pred             ccCcceeecccchhhhhhhhc-chHHHHHHhhh----HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence            01122344444    333333 28999886431    1235678899999998899999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.++++++++ |.|||++|||++++...+|
T Consensus       232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~~l~~~~D  279 (590)
T PRK13409        232 DFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLAVLDYLAD  279 (590)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999987 9999999999999988765

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=1.7e-40  Score=315.79  Aligned_cols=182  Identities=25%  Similarity=0.367  Sum_probs=159.5

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK   97 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (229)
                      +++++|+|+|+++++||+++|+|||||||||||++|+|..+|.   +|+|.++|.++..    ...++.++|++|++.++
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~----~~~~~~i~yv~Q~~~~~  111 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA----KEMRAISAYVQQDDLFI  111 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH----HHHhhhceeeccccccC
Confidence            3577999999999999999999999999999999999999885   7999999998753    23566799999999999


Q ss_pred             CCCCHHHhHHHHHHhcCc--------cccHHHHHHHhCCChhhcCCCC------CCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           98 EKFTVLDNVQWFEVLEGK--------QGNSLPALELMGLGRLAKEKAR------MLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~~--------~~~~~~~l~~~~l~~~~~~~~~------~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      +.+||+||+.+....+..        ...+.++++.+|+.+..+..+.      .|||||||||+||++|+.+|++++||
T Consensus       112 ~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllD  191 (617)
T TIGR00955       112 PTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCD  191 (617)
T ss_pred             ccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEee
Confidence            999999999987654311        1235678999999888888776      59999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~  206 (229)
                      |||+|||..+...+.+.+++++++|+|||+++|+++ ++.+.+|
T Consensus       192 EPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D  235 (617)
T TIGR00955       192 EPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFD  235 (617)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhc
Confidence            999999999999999999999878999999999985 6666664

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=2.3e-40  Score=298.36  Aligned_cols=207  Identities=28%  Similarity=0.414  Sum_probs=170.5

Q ss_pred             CCcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ...|.++++++--.  .+++++++||++.+||.+|||||||||||||.|+|.|..+|.+|.|++||-++.+++. ++.-+
T Consensus       332 ~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~-e~lG~  410 (580)
T COG4618         332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDR-EQLGR  410 (580)
T ss_pred             CceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCH-HHhcc
Confidence            35699999998653  4689999999999999999999999999999999999999999999999999987764 45667


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCC-----------ChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL-----------GRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      .+||+||+-.+|+. ||.|||.-+... .+.+.+.++.+..|.           +.........||||||||++|||||.
T Consensus       411 hiGYLPQdVeLF~G-TIaeNIaRf~~~-~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY  488 (580)
T COG4618         411 HIGYLPQDVELFDG-TIAENIARFGEE-ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY  488 (580)
T ss_pred             ccCcCcccceecCC-cHHHHHHhcccc-CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence            89999999999988 999999754321 122234444443333           33334456799999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh-----hccCCCCCCCCcc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA-----MNLRLPPRFPRRM  217 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~-----~~~~~~~~~~~~~  217 (229)
                      .+|.+++||||-|+||.+....+.+.|...+++|.|+|+|||.++.+..+     ++..-...|+.+-
T Consensus       489 G~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~  556 (580)
T COG4618         489 GDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPRE  556 (580)
T ss_pred             CCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHH
Confidence            99999999999999999999999999999999999999999999887664     2333335566663

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=7.7e-40  Score=333.06  Aligned_cols=193  Identities=25%  Similarity=0.337  Sum_probs=165.7

Q ss_pred             cEEEEeEEEEeC-------------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeC
Q 027067           10 RLLLKNVSCMRN-------------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDI   74 (229)
Q Consensus        10 ~l~l~~l~~~~~-------------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~   74 (229)
                      .+.++||++...             ++.+|+|||+++++|++++|+|||||||||||++|+|..++  .+|+|.++|.+.
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~  946 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK  946 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence            589999998752             34799999999999999999999999999999999999763  689999999876


Q ss_pred             CCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC----c----cccHHHHHHHhCCChhhcCCC-----CCCCh
Q 027067           75 TQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG----K----QGNSLPALELMGLGRLAKEKA-----RMLSM  141 (229)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~----~~~~~~~l~~~~l~~~~~~~~-----~~LSg  141 (229)
                      ..    ...++.++|++|++.+++.+||+||+.+....+.    .    ...+.++++.++|.+..++.+     ..|||
T Consensus       947 ~~----~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140        947 KQ----ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred             Ch----HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence            42    1234568999999999999999999988654321    1    123567899999998888876     58999


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh-hHHhhhc
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI-QIEDAMN  206 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~~  206 (229)
                      ||||||+||++|+.+|++|+|||||+|||..++..+.+.+++++++|+|||++||+++ ++.+.+|
T Consensus      1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D 1088 (1470)
T PLN03140       1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1088 (1470)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCC
Confidence            9999999999999999999999999999999999999999999888999999999998 4555544

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=7.7e-40  Score=288.36  Aligned_cols=204  Identities=22%  Similarity=0.265  Sum_probs=172.3

Q ss_pred             CCcEEEEeEEEEeC-----------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067            8 LPRLLLKNVSCMRN-----------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ   76 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-----------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   76 (229)
                      .+.++.++|.+.|.           ...++++|||++++||.+||+|+||||||||-++|.++++++ |+|.|+|+++..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~  352 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG  352 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence            46799999999883           146899999999999999999999999999999999999876 999999999986


Q ss_pred             Cchh--hhhhhcceEeeccc--ccCCCCCHHHhHHHHHHhcC-------ccccHHHHHHHhCCC-hhhcCCCCCCChhHH
Q 027067           77 SGIF--HQYKLQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG-------KQGNSLPALELMGLG-RLAKEKARMLSMGQR  144 (229)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~-------~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqk  144 (229)
                      .+..  .-.++++-.++|+|  ++.|.+||.+-+.-+.....       ...++.++|+.+||+ ..++++|+++|||||
T Consensus       353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQR  432 (534)
T COG4172         353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQR  432 (534)
T ss_pred             cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchh
Confidence            5432  12456677788876  68899999998876544322       124567899999997 568999999999999


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhccCCCCC
Q 027067          145 KRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNLRLPPR  212 (229)
Q Consensus       145 qRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~~~~~~  212 (229)
                      ||++||||++.+|++++||||||+||..-+..+.++++.+.+ .|.+-+++|||+..+.-.++.-+..+
T Consensus       433 QRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~  501 (534)
T COG4172         433 QRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR  501 (534)
T ss_pred             hHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence            999999999999999999999999999999999999999855 48899999999999988876544433

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=9.4e-40  Score=334.47  Aligned_cols=190  Identities=22%  Similarity=0.318  Sum_probs=164.8

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..|+++||+++|..  .++|+||||+|++||.+||+|+||||||||+++|+|+++ ++|+|++||.++...+. ...+.+
T Consensus      1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~-~~lR~~ 1293 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL-QTWRKA 1293 (1490)
T ss_pred             CeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH-HHHHhc
Confidence            46999999999953  689999999999999999999999999999999999997 79999999999987653 457789


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++++||++.+|.. |+++|+..+.  ...+++..++++.+++.+...+           ....||||||||++|||||++
T Consensus      1294 is~IpQdp~LF~G-TIR~NLdp~~--~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr 1370 (1490)
T TIGR01271      1294 FGVIPQKVFIFSG-TFRKNLDPYE--QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILS 1370 (1490)
T ss_pred             eEEEeCCCccCcc-CHHHHhCccc--CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhC
Confidence            9999999999986 9999996432  1234567788888887654433           345799999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||..+...+.+.|++.. +++|||+|||+++.+.++
T Consensus      1371 ~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~~ 1418 (1490)
T TIGR01271      1371 KAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEALLEC 1418 (1490)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhC
Confidence            999999999999999999999999998763 479999999999988874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.5e-39  Score=262.87  Aligned_cols=147  Identities=27%  Similarity=0.315  Sum_probs=124.6

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      .+++|+|+||+|++|++++|+||||||||||||++.    +++|+|.++|... ..     .+..+.|++|         
T Consensus         7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~-----~~~~~~~~~q---------   67 (176)
T cd03238           7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF-----SRNKLIFIDQ---------   67 (176)
T ss_pred             eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc-----ccccEEEEhH---------
Confidence            467899999999999999999999999999999996    3689999987521 11     1123455443         


Q ss_pred             HHHhHHHHHHhcCccccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHH
Q 027067          102 VLDNVQWFEVLEGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVALDYDGVRLLE  178 (229)
Q Consensus       102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~LD~~~~~~l~  178 (229)
                                        .++++.+++... .++++.+||+|||||++||||++.+  |+++||||||++||+.+++.+.
T Consensus        68 ------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~  129 (176)
T cd03238          68 ------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLL  129 (176)
T ss_pred             ------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHH
Confidence                              246788888753 7899999999999999999999999  9999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          179 YIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       179 ~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.++++++.|.|||++||+++++. .+|
T Consensus       130 ~~l~~~~~~g~tvIivSH~~~~~~-~~d  156 (176)
T cd03238         130 EVIKGLIDLGNTVILIEHNLDVLS-SAD  156 (176)
T ss_pred             HHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            999998777999999999998874 444

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.3e-39  Score=274.66  Aligned_cols=181  Identities=26%  Similarity=0.371  Sum_probs=152.0

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEee-cccccCCCCCH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS-LKDAVKEKFTV  102 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~tv  102 (229)
                      .+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.++|.+....  .+.+.+.++++. |..++...+.+
T Consensus        38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~--~~~~~~~~~~v~gqk~ql~Wdlp~  115 (325)
T COG4586          38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR--REEYLRSIGLVMGQKLQLWWDLPA  115 (325)
T ss_pred             hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh--HHHHHHHHHHHhhhhheeeeechh
Confidence            589999999999999999999999999999999999999999999999876542  234556666654 44556666666


Q ss_pred             HHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 027067          103 LDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL  177 (229)
Q Consensus       103 ~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l  177 (229)
                      .+-+......+..     .++.....+.++++.+++.+++.||-|||.|+.||.||+++|+||+|||||-|||..++..+
T Consensus       116 ~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i  195 (325)
T COG4586         116 LDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI  195 (325)
T ss_pred             hhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence            6655443333221     23455677889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          178 EYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       178 ~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+++++..+ .+.||+++||+++.++..|+
T Consensus       196 r~Flke~n~~~~aTVllTTH~~~di~~lc~  225 (325)
T COG4586         196 REFLKEYNEERQATVLLTTHIFDDIATLCD  225 (325)
T ss_pred             HHHHHHHHHhhCceEEEEecchhhHHHhhh
Confidence            999999754 58999999999999999875

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=6.5e-39  Score=282.54  Aligned_cols=200  Identities=23%  Similarity=0.321  Sum_probs=165.9

Q ss_pred             CCCcEEEEeEEEEeC----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEEcCEeCCCC
Q 027067            7 PLPRLLLKNVSCMRN----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-----SAGEILWNGHDITQS   77 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-----~~G~I~~~g~~~~~~   77 (229)
                      +.+.|.++|+++.|+    ...++++|||+|++||.+||+|+||||||-..+.++|+++.     -+|+|.|+|+++-..
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            346899999999995    67899999999999999999999999999999999999864     269999999998665


Q ss_pred             chhhh---hhhcceEeeccc--ccCCCCCHHHhHHHHHHh----cC--ccccHHHHHHHhCCCh---hhcCCCCCCChhH
Q 027067           78 GIFHQ---YKLQLNWLSLKD--AVKEKFTVLDNVQWFEVL----EG--KQGNSLPALELMGLGR---LAKEKARMLSMGQ  143 (229)
Q Consensus        78 ~~~~~---~~~~~~~~~~~~--~~~~~~tv~e~l~~~~~~----~~--~~~~~~~~l~~~~l~~---~~~~~~~~LSgGq  143 (229)
                      +..+.   .-.+|++++|+|  ++.|-.|+...+.-....    .+  .+.++.++|+.+|+.+   .++.+|++|||||
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGq  162 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQ  162 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcch
Confidence            43211   123689999997  456666766555432221    11  2345678899999953   4689999999999


Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          144 RKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       144 kqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+||.||+++|++||.||||++||..-+..+.+++++++++ |+.++++|||+..+....|
T Consensus       163 RQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~AD  226 (534)
T COG4172         163 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD  226 (534)
T ss_pred             hhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhh
Confidence            99999999999999999999999999999999999999998654 9999999999999988765

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.2e-38  Score=260.99  Aligned_cols=195  Identities=25%  Similarity=0.299  Sum_probs=161.2

Q ss_pred             cEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067           10 RLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      |+.+.|+.+.|.     .+++|+++|++|.+|+++.|+|.||||||||+++|+|-+.|++|+|.++|.++++.+..++ .
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~R-A   79 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKR-A   79 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHH-h
Confidence            467788887763     3679999999999999999999999999999999999999999999999999998765433 3


Q ss_pred             hcceEeeccc--ccCCCCCHHHhHHHHHHhcC---c--------cccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHH
Q 027067           85 LQLNWLSLKD--AVKEKFTVLDNVQWFEVLEG---K--------QGNSLPALELM--GLGRLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        85 ~~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~---~--------~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~l  149 (229)
                      ..++-++|+|  ..++.+|+.||+.++....+   .        ....++.++.+  |++..++.++.-|||||||-+++
T Consensus        80 ~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL  159 (263)
T COG1101          80 NLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSL  159 (263)
T ss_pred             hHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHH
Confidence            3456677876  46889999999987643211   0        11123445554  45678899999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~  205 (229)
                      +.|-+..|+||+|||-|++|||...+.++++-.++.+ .+.|.+||||+++.+-++.
T Consensus       160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG  216 (263)
T COG1101         160 LMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYG  216 (263)
T ss_pred             HHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhC
Confidence            9999999999999999999999999999998888654 4679999999998887764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=100.00  E-value=1.6e-38  Score=295.04  Aligned_cols=184  Identities=26%  Similarity=0.372  Sum_probs=158.9

Q ss_pred             CCCcEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            7 PLPRLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      +.+.++++|+++.|++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.- .           .
T Consensus       318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-~-----------v  385 (530)
T COG0488         318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-T-----------V  385 (530)
T ss_pred             CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-c-----------e
Confidence            4568999999999965 6999999999999999999999999999999999999999999998842 1           2


Q ss_pred             cceEeeccc-ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           86 QLNWLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        86 ~~~~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      +++|..|+. .+.+..|+.|++.-.... ..+..++..|..|++. +...+++..||||||.|+.||+.++.+|++||||
T Consensus       386 ~igyf~Q~~~~l~~~~t~~d~l~~~~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLD  464 (530)
T COG0488         386 KIGYFDQHRDELDPDKTVLEELSEGFPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLD  464 (530)
T ss_pred             EEEEEEehhhhcCccCcHHHHHHhhCcc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEc
Confidence            578888876 344666898887643211 1145678899999995 5678999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+||..+.+.+.+.|..+   ..|||+||||..+++..++
T Consensus       465 EPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr~Fl~~va~  504 (530)
T COG0488         465 EPTNHLDIESLEALEEALLDF---EGTVLLVSHDRYFLDRVAT  504 (530)
T ss_pred             CCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcc
Confidence            999999999999999999887   4699999999999999874

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=1.5e-38  Score=305.68  Aligned_cols=195  Identities=22%  Similarity=0.338  Sum_probs=147.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC---CCCccEEEEcCEeCCCCc--h----
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS---KPSAGEILWNGHDITQSG--I----   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~---~p~~G~I~~~g~~~~~~~--~----   79 (229)
                      .+|+++|++++|+++.+|+|+||+|.+|+++||+|+||||||||||+|+|..   .|++|+|.+.++.+....  .    
T Consensus       176 ~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v  255 (718)
T PLN03073        176 KDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCV  255 (718)
T ss_pred             eeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHH
Confidence            4699999999999989999999999999999999999999999999999964   578999987665432110  0    


Q ss_pred             -------hhhhhhcceEeecccccCCC-------------C---CHHHhHH----HHHHhc--CccccHHHHHHHhCCC-
Q 027067           80 -------FHQYKLQLNWLSLKDAVKEK-------------F---TVLDNVQ----WFEVLE--GKQGNSLPALELMGLG-  129 (229)
Q Consensus        80 -------~~~~~~~~~~~~~~~~~~~~-------------~---tv~e~l~----~~~~~~--~~~~~~~~~l~~~~l~-  129 (229)
                             .......+++++|.+.+...             .   .+.+-+.    .+....  ..+.++.+++..+|+. 
T Consensus       256 ~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~  335 (718)
T PLN03073        256 LNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTP  335 (718)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence                   00011224444443221110             0   0001111    011111  1234566788899996 


Q ss_pred             hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       130 ~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++++.+   +.|||+||||.+++...++
T Consensus       336 ~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd~~~l~~~~d  409 (718)
T PLN03073        336 EMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHAREFLNTVVT  409 (718)
T ss_pred             HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHHHHHHhCC
Confidence            5678999999999999999999999999999999999999999999999999876   6799999999999988764

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=2.2e-38  Score=311.02  Aligned_cols=198  Identities=35%  Similarity=0.503  Sum_probs=182.1

Q ss_pred             CcEEEEeEEEEeCCee-eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQQ-ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~-iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..+.++|+++.|+.+. +++++|+.|++||+.|+.|+|||||||++|+|.|..+|++|+++++|.++.......+.++.+
T Consensus       563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i  642 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL  642 (885)
T ss_pred             ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence            4689999999998877 999999999999999999999999999999999999999999999999987654434567889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ||.||.+.+++.+|.+|++.+++..++..     ..+...++.+++.+..+++++.+|||+|+|+++|.|++.+|++++|
T Consensus       643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~L  722 (885)
T KOG0059|consen  643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILL  722 (885)
T ss_pred             ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEe
Confidence            99999999999999999999998877632     2356778999999999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+|+||.+++.+++++.+.+++|+.||++||.+++.+..|+
T Consensus       723 DEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCt  766 (885)
T KOG0059|consen  723 DEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCT  766 (885)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhh
Confidence            99999999999999999999999887799999999999999875

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=3.4e-38  Score=321.06  Aligned_cols=182  Identities=20%  Similarity=0.197  Sum_probs=153.4

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC----CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS----KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE   98 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
                      +++|+|+|+++++||+++|+||||||||||||+|+|+.    +|++|+|+++|+++....  ...+..++|++|++.+++
T Consensus        74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~--~~~r~~i~yv~Q~d~~~~  151 (1394)
T TIGR00956        74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK--KHYRGDVVYNAETDVHFP  151 (1394)
T ss_pred             ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH--hhcCceeEEeccccccCC
Confidence            45999999999999999999999999999999999996    578999999999875321  224456999999999999


Q ss_pred             CCCHHHhHHHHHHhcC--------cc-c---c-HHHHHHHhCCChhhcCC-----CCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           99 KFTVLDNVQWFEVLEG--------KQ-G---N-SLPALELMGLGRLAKEK-----ARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~--------~~-~---~-~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .+||+|++.+....+.        .. +   + .+++++.+||.+..+++     +..|||||||||+||++|+.+|+++
T Consensus       152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl  231 (1394)
T TIGR00956       152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ  231 (1394)
T ss_pred             CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence            9999999998654321        01 1   1 23468889998777654     5689999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCh-hhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLP-IQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~-~~~~~~~~  206 (229)
                      +|||||+|||+.++..+.+.|++++++ |+|||+++|++ +++.+.+|
T Consensus       232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D  279 (1394)
T TIGR00956       232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFD  279 (1394)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Confidence            999999999999999999999998764 89999999996 56666553

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-37  Score=257.94  Aligned_cols=174  Identities=22%  Similarity=0.282  Sum_probs=152.3

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      .++|+||||++++||.+||+|+||||||||||+|+|.++|++|+|.++|+-.+-      .....       .+.+.+|.
T Consensus        40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l------i~lg~-------Gf~pelTG  106 (249)
T COG1134          40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL------IELGA-------GFDPELTG  106 (249)
T ss_pred             EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh------hhccc-------CCCcccch
Confidence            469999999999999999999999999999999999999999999999965321      11222       34577899


Q ss_pred             HHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH
Q 027067          103 LDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL  177 (229)
Q Consensus       103 ~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l  177 (229)
                      +||+.+...+.+.     .....+..+.-+|.++.++++.++|.||+-|+++|.|...+|+|||+||-.+.-|+.-++.-
T Consensus       107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~  186 (249)
T COG1134         107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC  186 (249)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence            9999886655432     23456778888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcEEEEEeCChhhHHhhhccCC
Q 027067          178 EYIIAEHRKKGGIVIVATHLPIQIEDAMNLRL  209 (229)
Q Consensus       178 ~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~  209 (229)
                      .+.+.++.+++.|||+||||++.+.+.||.-+
T Consensus       187 ~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i  218 (249)
T COG1134         187 LERLNELVEKNKTIVLVSHDLGAIKQYCDRAI  218 (249)
T ss_pred             HHHHHHHHHcCCEEEEEECCHHHHHHhcCeeE
Confidence            99999998888999999999999999998554

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-37  Score=245.90  Aligned_cols=198  Identities=28%  Similarity=0.370  Sum_probs=164.9

Q ss_pred             cEEEEeEEEEe-----CC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe----CCCCc
Q 027067           10 RLLLKNVSCMR-----NA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD----ITQSG   78 (229)
Q Consensus        10 ~l~l~~l~~~~-----~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~----~~~~~   78 (229)
                      .|.++||+|+|     ++  -++++++||+++.|||+++-||||||||||||++-|.|.|++|+|++.-..    +....
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~   83 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE   83 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence            58999999988     23  369999999999999999999999999999999999999999999996432    11111


Q ss_pred             ---hhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067           79 ---IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        79 ---~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l  149 (229)
                         ...-.+..+||++|.-...|..+..|.+.-.....+.     ..++..++.++++. .++.-.|.++||||||||.|
T Consensus        84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNI  163 (235)
T COG4778          84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNI  163 (235)
T ss_pred             hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhh
Confidence               1222356799999988888888888877654433332     23456788999995 56788999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||.++.+-+||+|||||++||..+++.+.++|.+.+.+|..+|=+=||.+.-+..+|-
T Consensus       164 aRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR  221 (235)
T COG4778         164 ARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADR  221 (235)
T ss_pred             hhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999998766666553

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.8e-37  Score=316.62  Aligned_cols=178  Identities=18%  Similarity=0.266  Sum_probs=148.2

Q ss_pred             cEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++++|++++|++   +++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+..             .+.+
T Consensus       614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-------------~~~~  680 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-------------IRGS  680 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-------------ecCc
Confidence            5999999999964   57999999999999999999999999999999999999999987631             2347


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.++.. |++|||.++...  .+++..++++.+++.+..           ..+...||||||||++||||+..
T Consensus       681 Iayv~Q~p~Lf~g-TIreNI~fg~~~--~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~  757 (1495)
T PLN03232        681 VAYVPQVSWIFNA-TVRENILFGSDF--ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYS  757 (1495)
T ss_pred             EEEEcCccccccc-cHHHHhhcCCcc--CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhc
Confidence            8999999998865 999999987532  344566777777764432           34566899999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|+|||||||+||.+..+.+ .+.+... .+++|+|++||+++.+..+
T Consensus       758 ~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~~l~~a  806 (1495)
T PLN03232        758 NSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLHFLPLM  806 (1495)
T ss_pred             CCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChhhHHhC
Confidence            9999999999999999977655 4556554 3579999999999877653

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-38  Score=283.54  Aligned_cols=192  Identities=23%  Similarity=0.357  Sum_probs=160.9

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||++.|. ++++|+||||++.+|+.+|++||||+||||++|++..+...++|.|.+||+|+..... ...+..+
T Consensus       536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~-~SLRs~I  614 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ-SSLRSSI  614 (790)
T ss_pred             CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH-HHHHHhc
Confidence            4699999999994 6899999999999999999999999999999999999999999999999999875432 3467889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHh-------CCCh----hhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-------GLGR----LAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-------~l~~----~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      |.+||+..+|.+ |+..||.+..... ..+++.++.+..       ++.+    ....+.-.|||||||||+|||+++.+
T Consensus       615 GVVPQDtvLFNd-TI~yNIryak~~A-sneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~  692 (790)
T KOG0056|consen  615 GVVPQDTVLFND-TILYNIRYAKPSA-SNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKA  692 (790)
T ss_pred             CcccCcceeecc-eeeeheeecCCCC-ChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcC
Confidence            999999888766 9999998764322 223333333333       3322    23456778999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |.+++|||.||+||..+.+.+...+..+++ ++|-|+|.|.++.+.++
T Consensus       693 P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLSTivnA  739 (790)
T KOG0056|consen  693 PSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLSTIVNA  739 (790)
T ss_pred             CcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehheecc
Confidence            999999999999999999999999999865 67888999999888765

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=3.8e-37  Score=316.55  Aligned_cols=178  Identities=19%  Similarity=0.323  Sum_probs=149.8

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +.++++|++++|+.   +++|+|+||+|++||.++|+||+|||||||+++|+|.++|++ |+|.+.              
T Consensus       613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~--------------  678 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR--------------  678 (1622)
T ss_pred             CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc--------------
Confidence            36999999999963   679999999999999999999999999999999999999999 899752              


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHH
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral  153 (229)
                      .+++|++|++.++.. |++|||.++...  .+++..++++.+++.+..           ..+...|||||||||+||||+
T Consensus       679 ~~Iayv~Q~p~Lfng-TIreNI~fg~~~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAl  755 (1622)
T PLN03130        679 GTVAYVPQVSWIFNA-TVRDNILFGSPF--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAV  755 (1622)
T ss_pred             CeEEEEcCccccCCC-CHHHHHhCCCcc--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence            358999999998865 999999987542  244566777777765432           345678999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ..+|+|+|||||||+||++..+.+ .+.+.... +++|+|+|||+++.+..+
T Consensus       756 y~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~~l~~a  806 (1622)
T PLN03130        756 YSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLHFLSQV  806 (1622)
T ss_pred             hCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHhHHHhC
Confidence            999999999999999999876544 56666543 579999999999877654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=3.6e-37  Score=316.18  Aligned_cols=177  Identities=22%  Similarity=0.274  Sum_probs=147.7

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++|+++.|++  +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|              ++
T Consensus       636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--------------~i  701 (1522)
T TIGR00957       636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--------------SV  701 (1522)
T ss_pred             cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--------------EE
Confidence            6999999999974  5799999999999999999999999999999999999999999999976              37


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-----------hhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-----------RLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++ +.|++||+.++....  .++..++++.+++.           ....+++.+||||||||++||||++.+
T Consensus       702 ~yv~Q~~~l~-~~Ti~eNI~~g~~~~--~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~  778 (1522)
T TIGR00957       702 AYVPQQAWIQ-NDSLRENILFGKALN--EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  778 (1522)
T ss_pred             EEEcCCcccc-CCcHHHHhhcCCccC--HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence            8999998876 469999998753221  12223333333332           234567889999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHH--HhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEH--RKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~--~~~g~tii~vtH~~~~~~~  203 (229)
                      |+++||||||++||+...+.+.+.+...  ..+++|+|++||+++.+..
T Consensus       779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~  827 (1522)
T TIGR00957       779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ  827 (1522)
T ss_pred             CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh
Confidence            9999999999999999998888777542  2347899999999988876

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2.3e-37  Score=248.29  Aligned_cols=198  Identities=25%  Similarity=0.347  Sum_probs=162.8

Q ss_pred             CcEEEEeEEEEeC---------CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch
Q 027067            9 PRLLLKNVSCMRN---------AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI   79 (229)
Q Consensus         9 ~~l~l~~l~~~~~---------~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~   79 (229)
                      +.++++|++|.|.         ...+++.|||++++|+.+||+|.||||||||.|+|+|+++|++|+|.+||+.+....+
T Consensus         3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy   82 (267)
T COG4167           3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY   82 (267)
T ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence            4689999998763         2358999999999999999999999999999999999999999999999999865443


Q ss_pred             hhhhhhcceEeecccc--cCCCCCHHHhHHHHHHhcCc------cccHHHHHHHhCC-ChhhcCCCCCCChhHHHHHHHH
Q 027067           80 FHQYKLQLNWLSLKDA--VKEKFTVLDNVQWFEVLEGK------QGNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        80 ~~~~~~~~~~~~~~~~--~~~~~tv~e~l~~~~~~~~~------~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                       ....+.+-+++|+++  +.|.+.+-+-+..+..+...      ..++.+.|.++|+ .+..+-+|+.||-||||||++|
T Consensus        83 -~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLA  161 (267)
T COG4167          83 -SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALA  161 (267)
T ss_pred             -HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHH
Confidence             223456788888764  55666665555444333211      2345577899998 4678899999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||+.+|+|+|.||..++||..-+..+.+++.++.+ .|.+.|+|+.++..+.+..|.
T Consensus       162 RALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~  219 (267)
T COG4167         162 RALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQ  219 (267)
T ss_pred             HHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhccc
Confidence            999999999999999999999998888888877765 499999999999999887653

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=9.5e-37  Score=289.05  Aligned_cols=187  Identities=27%  Similarity=0.391  Sum_probs=164.8

Q ss_pred             CcEEEEeEEEEeC-----CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchh
Q 027067            9 PRLLLKNVSCMRN-----AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~~-----~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~   80 (229)
                      ..+.++|+++...     .+++|++||.++++||+.||+||+||||||||++|+|-...   .+|+|.+||+....    
T Consensus        24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~----   99 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS----   99 (613)
T ss_pred             ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch----
Confidence            3588889887663     36899999999999999999999999999999999999875   68999999966543    


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc--------cccHHHHHHHhCCChhhcCCCC-----CCChhHHHHH
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--------QGNSLPALELMGLGRLAKEKAR-----MLSMGQRKRL  147 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--------~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv  147 (229)
                      +..+...+|+.|++.+++.+||+|++.+.+.++-.        ..+++++++.+|+....|..++     .+||||||||
T Consensus       100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv  179 (613)
T KOG0061|consen  100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV  179 (613)
T ss_pred             hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence            34567789999999999999999999987765321        2356788999999988888876     5999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI  199 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~  199 (229)
                      +||.-++.+|.||+|||||+|||..+...+.+.+++++++|+|||++-|.+.
T Consensus       180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPs  231 (613)
T KOG0061|consen  180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPS  231 (613)
T ss_pred             HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCc
Confidence            9999999999999999999999999999999999999888999999999974

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=100.00  E-value=1.5e-37  Score=241.20  Aligned_cols=133  Identities=35%  Similarity=0.555  Sum_probs=117.4

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~  105 (229)
                      |+||||+|++|++++|+|+||||||||+++|+|+.+|++|+|.++|+++.... ....+..++|+++++.+++.+|+.+|
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID-IEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH-HHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            78999999999999999999999999999999999999999999999997633 23466789999999999999999998


Q ss_pred             HHHHHHhcCccccHHHHHHHhCCChhhcCCC----CCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067          106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKA----RMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus       106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      .        ...+..++++.+++.+..++.+    .+||+||||||+|||||+.+|+++|||||||
T Consensus        80 ~--------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 E--------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             H--------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             c--------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            1        1234667888888876666555    9999999999999999999999999999997

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.6e-37  Score=243.97  Aligned_cols=200  Identities=21%  Similarity=0.244  Sum_probs=157.9

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-----CCCchhh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-----TQSGIFH   81 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-----~~~~~~~   81 (229)
                      ..|.+++.++++.|+...-.++|||++.|||+.||+|+|||||||||+||++-+.|++|+|.+.-.+-     ...+..+
T Consensus         3 ~~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae   82 (258)
T COG4107           3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE   82 (258)
T ss_pred             CCcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence            34689999999999999999999999999999999999999999999999999999999999965331     1111111


Q ss_pred             ---hhhhcceEeecccc--cCCCCCHHHhHH-----HHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHH
Q 027067           82 ---QYKLQLNWLSLKDA--VKEKFTVLDNVQ-----WFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        82 ---~~~~~~~~~~~~~~--~~~~~tv~e~l~-----~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~l  149 (229)
                         -.+...+|+.|+|.  +-...+.-.|+.     .+...++ ....+.+|++.+.++ ...+..|.++||||+||+.|
T Consensus        83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi  162 (258)
T COG4107          83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI  162 (258)
T ss_pred             HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence               12345788888764  222223333432     1222222 234567899999996 44688899999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||-|+..|+++++||||.|||..-+..+.++++.+. +-+.++++||||+..+.-..+
T Consensus       163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~  220 (258)
T COG4107         163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAD  220 (258)
T ss_pred             HHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhh
Confidence            999999999999999999999999999999999975 458899999999987765544

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=3.9e-37  Score=313.33  Aligned_cols=181  Identities=24%  Similarity=0.301  Sum_probs=154.0

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE   98 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
                      ++.+|+|+|+.|++||+++|+||||||||||||+|+|.++|+   +|+|.++|+++....    .++.++|++|++.+++
T Consensus       177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~----~~~~i~yv~Q~d~~~~  252 (1470)
T PLN03140        177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV----PRKTSAYISQNDVHVG  252 (1470)
T ss_pred             cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc----ccceeEEecccccCCC
Confidence            356999999999999999999999999999999999999998   999999999875432    2457899999999999


Q ss_pred             CCCHHHhHHHHHHhcC-------------cc--------c------------------cHHHHHHHhCCChhh-----cC
Q 027067           99 KFTVLDNVQWFEVLEG-------------KQ--------G------------------NSLPALELMGLGRLA-----KE  134 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~-------------~~--------~------------------~~~~~l~~~~l~~~~-----~~  134 (229)
                      .+||+|++.+......             .+        .                  ...++++.+||.+..     ++
T Consensus       253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~  332 (1470)
T PLN03140        253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE  332 (1470)
T ss_pred             cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence            9999999988654321             00        0                  024578889997654     56


Q ss_pred             CCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCh-hhHHhhhc
Q 027067          135 KARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLP-IQIEDAMN  206 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~~  206 (229)
                      .+..|||||||||+||++|+.+|++++|||||+|||..+...+.+.++++++ .|+|+|+++|++ .++.+.+|
T Consensus       333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD  406 (1470)
T PLN03140        333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFD  406 (1470)
T ss_pred             cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhh
Confidence            7789999999999999999999999999999999999999999999999865 589999999996 46666654

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.5e-36  Score=310.95  Aligned_cols=163  Identities=25%  Similarity=0.354  Sum_probs=135.6

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      +++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|              .++|++|++.+++. |+
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--------------~iayv~Q~~~l~~~-Ti  503 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--------------RISFSPQTSWIMPG-TI  503 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--------------EEEEEeCCCccCCc-cH
Confidence            4589999999999999999999999999999999999999999999987              37999999988875 99


Q ss_pred             HHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067          103 LDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY  171 (229)
Q Consensus       103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~  171 (229)
                      +||+.++....  ..+..++++.+++.+           ....++.+|||||||||+||||++.+|+++||||||++||+
T Consensus       504 ~eNI~~g~~~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       504 KDNIIFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             HHHHHhccccc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            99998764221  112233333333322           23556889999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHh
Q 027067          172 DGVRLLEY-IIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       172 ~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ...+.+.+ .+..+. +++|+|++||+++.+..
T Consensus       582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~~~~  613 (1490)
T TIGR01271       582 VTEKEIFESCLCKLM-SNKTRILVTSKLEHLKK  613 (1490)
T ss_pred             HHHHHHHHHHHHHHh-cCCeEEEEeCChHHHHh
Confidence            99988876 455554 48999999999988865

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=3.3e-35  Score=247.61  Aligned_cols=183  Identities=23%  Similarity=0.271  Sum_probs=124.1

Q ss_pred             EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH-HHHHCCCCCCccEEEEcC-------EeC---CCCchhhhhhhc
Q 027067           18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFL-RMLAGFSKPSAGEILWNG-------HDI---TQSGIFHQYKLQ   86 (229)
Q Consensus        18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~~p~~G~I~~~g-------~~~---~~~~~~~~~~~~   86 (229)
                      ++..+..+|++|||+|++||+++|+||||||||||+ .++.     .+|++.+..       ...   ............
T Consensus         3 ~~~~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (226)
T cd03270           3 VRGAREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLS   77 (226)
T ss_pred             eccchhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCC
Confidence            344567899999999999999999999999999996 4443     134332210       000   000000000011


Q ss_pred             ceEeecccc--cCCCCCHH---HhHHHHHHhcC--ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC-
Q 027067           87 LNWLSLKDA--VKEKFTVL---DNVQWFEVLEG--KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR-  157 (229)
Q Consensus        87 ~~~~~~~~~--~~~~~tv~---e~l~~~~~~~~--~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p-  157 (229)
                      ..+..+++.  ..+..++.   +...+......  ......+.++.+++.+ ..++++.+|||||||||+|||||+.+| 
T Consensus        78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~  157 (226)
T cd03270          78 PAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLT  157 (226)
T ss_pred             ceEEecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCC
Confidence            222223222  22333432   22222211111  1122356789999976 479999999999999999999999998 


Q ss_pred             -CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 -PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 -~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                       ++|||||||++||+..+..+.+++.+++++|.|||++||+++++. .+|
T Consensus       158 ~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~-~~d  206 (226)
T cd03270         158 GVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIR-AAD  206 (226)
T ss_pred             CCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHH-hCC
Confidence             599999999999999999999999998778999999999998864 554

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=2.9e-35  Score=302.06  Aligned_cols=167  Identities=28%  Similarity=0.349  Sum_probs=135.3

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      +++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.              ..++|++|++.++ ..
T Consensus       671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--------------~~i~yv~Q~~~l~-~~  735 (1560)
T PTZ00243        671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--------------RSIAYVPQQAWIM-NA  735 (1560)
T ss_pred             CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--------------CeEEEEeCCCccC-CC
Confidence            45679999999999999999999999999999999999999999999762              2589999998876 46


Q ss_pred             CHHHhHHHHHHhcC--cc-----ccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067          101 TVLDNVQWFEVLEG--KQ-----GNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY  171 (229)
Q Consensus       101 tv~e~l~~~~~~~~--~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~  171 (229)
                      |++||+.++.....  ..     ....+.++.+  |+....++++.+|||||||||+||||++.+|+++||||||++||+
T Consensus       736 Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~  815 (1560)
T PTZ00243        736 TVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA  815 (1560)
T ss_pred             cHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence            99999987532110  00     0112233444  666667888999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHHHhCCcEEEEEeCChhhHHh
Q 027067          172 DGVRLLEY-IIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       172 ~~~~~l~~-~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ...+.+.+ ++... .+|+|+|++||+++.+..
T Consensus       816 ~~~~~i~~~~~~~~-~~~~TvIlvTH~~~~~~~  847 (1560)
T PTZ00243        816 HVGERVVEECFLGA-LAGKTRVLATHQVHVVPR  847 (1560)
T ss_pred             HHHHHHHHHHHHHh-hCCCEEEEEeCCHHHHHh
Confidence            97766654 44333 248999999999998865

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.3e-35  Score=258.82  Aligned_cols=191  Identities=25%  Similarity=0.341  Sum_probs=159.7

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+.+.+|++.|. .+++|+++||++++|+.++++||+|+||||++++|..++.+++|.|.++|+++.... .+..++.+|
T Consensus       262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt-q~slR~aIg  340 (497)
T COG5265         262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT-QQSLRRAIG  340 (497)
T ss_pred             eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH-HHHHHHHhC
Confidence            488999999995 688999999999999999999999999999999999999999999999999986543 234577899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      .+||+..+|.. |..-|+.++.... ..+++..+.+...+.+           ....+.-.|||||||||+|||+++.+|
T Consensus       341 ~VPQDtvLFND-ti~yni~ygr~~a-t~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p  418 (497)
T COG5265         341 IVPQDTVLFND-TIAYNIKYGRPDA-TAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP  418 (497)
T ss_pred             cCcccceehhh-hHHHHHhccCccc-cHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence            99999888765 8999988764322 2223334444443332           234556789999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +||+|||.||+||..+.+.+...+++.. .|+|.+++.|.++.+.++
T Consensus       419 ~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlsti~~a  464 (497)
T COG5265         419 PILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLSTIIDA  464 (497)
T ss_pred             CEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhhccCC
Confidence            9999999999999999999999998875 588999999999998876

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=100.00  E-value=1.4e-34  Score=239.07  Aligned_cols=161  Identities=22%  Similarity=0.286  Sum_probs=127.1

Q ss_pred             eeee-eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---------cEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           23 QQIL-RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---------GEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        23 ~~iL-~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---------G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      ..-+ +++++++.+| +++|+||||||||||+++|+|+.++..         |++.+.|++....    .....+++++|
T Consensus         9 fr~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~vfq   83 (197)
T cd03278           9 FKSFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANFAEVTLTFD   83 (197)
T ss_pred             CcCcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC----CceEEEEEEEE
Confidence            3345 7889999999 999999999999999999999986653         4677777665321    12457899999


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCC
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVA  168 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~  168 (229)
                      ++..+.  ..           ....++.++++.   .+..++++.+||+|||||++||++++    .+|+++||||||++
T Consensus        84 ~~~~~~--~~-----------~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~  147 (197)
T cd03278          84 NSDGRY--SI-----------ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA  147 (197)
T ss_pred             cCCCce--eE-----------EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence            876551  10           012345556665   45678899999999999999999997    46699999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+..++.+.++++++++ +.|||++||+++.++ .+|
T Consensus       148 LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~~~~-~~d  183 (197)
T cd03278         148 LDDANVERFARLLKEFSK-ETQFIVITHRKGTME-AAD  183 (197)
T ss_pred             CCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHh-hcc
Confidence            999999999999999865 689999999998764 444

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=8e-34  Score=282.66  Aligned_cols=192  Identities=27%  Similarity=0.374  Sum_probs=166.6

Q ss_pred             CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ...++++|++.+|..  ..+|+||||+|++||.+||+|..|||||||+++|.++.+|.+|+|.+||.|+...+. .+.|.
T Consensus      1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL-~dLRs 1214 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL-HDLRS 1214 (1381)
T ss_pred             CCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH-HHHHh
Confidence            356999999999954  579999999999999999999999999999999999999999999999999998875 56788


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++.+||+|.+|.+ |++.|+.-+...  .+++..++|+.++|.+..           .....++|-||||.+||||||+
T Consensus      1215 rlsIIPQdPvLFsG-TvR~NLDPf~e~--sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALL 1291 (1381)
T KOG0054|consen 1215 RLSIIPQDPVLFSG-TVRFNLDPFDEY--SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALL 1291 (1381)
T ss_pred             cCeeeCCCCceecC-ccccccCccccc--CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHh
Confidence            99999999999987 999998633221  234566777777665443           2345789999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++++||+|||.||++|+++-..+.+.|++. =+++|||.+.|+++.+.++
T Consensus      1292 r~skILvLDEATAsVD~~TD~lIQ~tIR~~-F~dcTVltIAHRl~TVmd~ 1340 (1381)
T KOG0054|consen 1292 RKSKILVLDEATASVDPETDALIQKTIREE-FKDCTVLTIAHRLNTVMDS 1340 (1381)
T ss_pred             ccCCEEEEecccccCChHHHHHHHHHHHHH-hcCCeEEEEeeccchhhhc
Confidence            999999999999999999999999988874 2379999999999999886

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=2.7e-33  Score=240.21  Aligned_cols=180  Identities=26%  Similarity=0.409  Sum_probs=138.7

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH--------CC--CCCCcc-----------EEEEcCEeCCCCc---
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA--------GF--SKPSAG-----------EILWNGHDITQSG---   78 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~--------Gl--~~p~~G-----------~I~~~g~~~~~~~---   78 (229)
                      ...|+|||++|+.|.+++|+|+||||||||++.+.        +.  ..|..+           -|.++..++....   
T Consensus         8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~   87 (261)
T cd03271           8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN   87 (261)
T ss_pred             hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence            44699999999999999999999999999998652        11  012211           3566666654321   


Q ss_pred             ------hhhh-------------h---hhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCC
Q 027067           79 ------IFHQ-------------Y---KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEK  135 (229)
Q Consensus        79 ------~~~~-------------~---~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~  135 (229)
                            .+..             +   ...+.|...+...+..+|+.|++.|+..... ..+..++++.+||.. ..+++
T Consensus        88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~-~~~~~~~L~~vgL~~l~l~~~  166 (261)
T cd03271          88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK-IARKLQTLCDVGLGYIKLGQP  166 (261)
T ss_pred             HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh-HHHHHHHHHHcCCchhhhcCc
Confidence                  1111             0   1123344444555677899999988765432 234667899999987 57999


Q ss_pred             CCCCChhHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          136 ARMLSMGQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       136 ~~~LSgGqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +.+|||||+||++|||+|+.+   |+++||||||+|||+..++.+.+++.+++++|.|||++||+++.+..
T Consensus       167 ~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~  237 (261)
T cd03271         167 ATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKC  237 (261)
T ss_pred             cccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence            999999999999999999996   79999999999999999999999999998889999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=4.4e-33  Score=236.20  Aligned_cols=188  Identities=21%  Similarity=0.267  Sum_probs=133.5

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------CCCCCCcc--------E
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA----------------GFSKPSAG--------E   66 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----------------Gl~~p~~G--------~   66 (229)
                      ++++|. ++|++..++++++     |++++|+||||||||||+++|+                +++.+++|        +
T Consensus         4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~   77 (243)
T cd03272           4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE   77 (243)
T ss_pred             EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence            445544 3578888888887     8899999999999999999998                55556666        6


Q ss_pred             EEEcCEeCCCC--chhhhhhhcceEeecccccCC-CCCHHHhHHHHHHhcCccc------cHHHHHHHhCCChhhcCCCC
Q 027067           67 ILWNGHDITQS--GIFHQYKLQLNWLSLKDAVKE-KFTVLDNVQWFEVLEGKQG------NSLPALELMGLGRLAKEKAR  137 (229)
Q Consensus        67 I~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~tv~e~l~~~~~~~~~~~------~~~~~l~~~~l~~~~~~~~~  137 (229)
                      |.+++.+-...  ......++.+++++++..+++ ..|..|...+.....-...      ......+.+++.+..++++.
T Consensus        78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~  157 (243)
T cd03272          78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQ  157 (243)
T ss_pred             EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhcccccccccc
Confidence            66655321100  000123445788777776766 3566665554433211110      01234445566666788999


Q ss_pred             CCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          138 MLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       138 ~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +||||||||++||||++.    +|+++|+||||++||+.+++.+.+.+.++++ +.+||++||+.+ +.+.+|
T Consensus       158 ~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~~-~~~~~d  228 (243)
T cd03272         158 QLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRPE-LLEVAD  228 (243)
T ss_pred             ccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHhhCC
Confidence            999999999999999973    5899999999999999999999999998865 788999898864 556655

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=6e-34  Score=227.07  Aligned_cols=187  Identities=21%  Similarity=0.275  Sum_probs=156.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++||+..-    -|-.+|.++..||++-+||||||||||||-.++|+.+ -+|+|.++|.++..... ....++-.|
T Consensus         3 l~qln~v~~~t----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~-~sGsi~~~G~~l~~~~~-~eLArhRAY   76 (248)
T COG4138           3 LMQLNDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSA-TELARHRAY   76 (248)
T ss_pred             eeeeccccccc----cccccccccccceEEEEECCCCccHHHHHHHHhCCCC-CCceEEECCcchhHHhH-hHHHHHHHH
Confidence            57888887643    3778999999999999999999999999999999975 68999999999876543 234456688


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc-------CCCeEEE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI-------DRPIWLL  162 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~illl  162 (229)
                      +.|+....+.+.|..++.+............++...+++++.+.+..++|||||-|||-+|..+++       ..++||+
T Consensus        77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll  156 (248)
T COG4138          77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL  156 (248)
T ss_pred             HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence            888877777788888887653322222345677888999999999999999999999999998765       3479999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |||.++||...+-.+..++..++..|.+|||++||++.--
T Consensus       157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTL  196 (248)
T COG4138         157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTL  196 (248)
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHH
Confidence            9999999999999999999999999999999999987543

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.6e-32  Score=270.87  Aligned_cols=181  Identities=27%  Similarity=0.368  Sum_probs=153.8

Q ss_pred             CCCCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067            6 PPLPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus         6 ~~~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~   82 (229)
                      ++...++++|.+++++.   .+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|+|.++|.          
T Consensus       514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------  583 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------  583 (1381)
T ss_pred             CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe----------
Confidence            34567999999999854   44899999999999999999999999999999999999999999999873          


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAr  151 (229)
                          ++|++|.+.++.. ||+|||.|+..+.  +++.+++++.+.|....           ..+.-+||||||||++|||
T Consensus       584 ----iaYv~Q~pWI~ng-TvreNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLAR  656 (1381)
T KOG0054|consen  584 ----VAYVPQQPWIQNG-TVRENILFGSPYD--EERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLAR  656 (1381)
T ss_pred             ----EEEeccccHhhCC-cHHHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHH
Confidence                6899999988765 9999999986543  34566677777765332           4677899999999999999


Q ss_pred             HHhcCCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          152 LLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD~~-~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |+.++++|+|||.|+|++|.+ +++.+.+.+..+ -+++|+|+|||.+..+.++
T Consensus       657 AVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~~L~~a  709 (1381)
T KOG0054|consen  657 AVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQFLPHA  709 (1381)
T ss_pred             HHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchhhhhhC
Confidence            999999999999999999998 556777777554 3479999999998888775

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=100.00  E-value=4.4e-33  Score=237.91  Aligned_cols=188  Identities=22%  Similarity=0.215  Sum_probs=135.0

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCE-eCCCCc-hhhhhhhcc
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGH-DITQSG-IFHQYKLQL   87 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~-~~~~~~-~~~~~~~~~   87 (229)
                      ++++|. ++|.+..++.    .+. ..+++|+||||||||||+++|++++.++ .|++++.+. ++.... ........+
T Consensus         6 ~~~~~f-~~~~~~~~~~----~~~-~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v   79 (251)
T cd03273           6 IILDGF-KSYATRTVIS----GFD-PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV   79 (251)
T ss_pred             EEEeCc-cccCcCEeec----cCC-CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence            455554 4454433322    333 5699999999999999999999999886 468888775 332111 001123467


Q ss_pred             eEeeccc---------ccCCCCCHHHhHHHHHHh----cC---ccccHHHHHHHhCCC--------------------hh
Q 027067           88 NWLSLKD---------AVKEKFTVLDNVQWFEVL----EG---KQGNSLPALELMGLG--------------------RL  131 (229)
Q Consensus        88 ~~~~~~~---------~~~~~~tv~e~l~~~~~~----~~---~~~~~~~~l~~~~l~--------------------~~  131 (229)
                      .+++|++         .+.+.+||.+++......    ..   ...++.++++.+++.                    +.
T Consensus        80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~  159 (251)
T cd03273          80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGV  159 (251)
T ss_pred             EEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHh
Confidence            7778764         345567887776542211    11   123456788999985                    45


Q ss_pred             hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .++++.+||+|||||++||+||+    .+|+++|+||||++||+..++.+.+.++++. +|.|+|++||+.+.++ .+|
T Consensus       160 ~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~~~~~-~~d  236 (251)
T cd03273         160 WKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKEGMFN-NAN  236 (251)
T ss_pred             hcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHH-hCC
Confidence            67899999999999999999998    5789999999999999999999999999885 4889999999965544 344

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.98  E-value=3.5e-32  Score=227.10  Aligned_cols=183  Identities=17%  Similarity=0.124  Sum_probs=125.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEe-CCcEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIH-DGGALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~-~Ge~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .|+++|+. +|.+.   ++++|+.. +|++++|+||||||||||+++|++. +-+..+....+ ........ ......+
T Consensus         5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~-~~~~~~v   78 (213)
T cd03279           5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAP-GEDTAEV   78 (213)
T ss_pred             EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcC-CCccEEE
Confidence            47888888 55444   56677654 5899999999999999999999964 33444444332 00000000 1123346


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHH--HHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----------
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL--PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI----------  155 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~--~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----------  155 (229)
                      ++.++....  .+++..+..+      ......  ..+...++.++.++++.+||+||+||++||||++.          
T Consensus        79 ~~~f~~~~~--~~~~~r~~gl------~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~  150 (213)
T cd03279          79 SFTFQLGGK--KYRVERSRGL------DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGA  150 (213)
T ss_pred             EEEEEECCe--EEEEEEecCC------CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCC
Confidence            666655421  1112111100      001111  12344456678899999999999999999999985          


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|+++||||||++||+.+++.+.+++.++++++.|||++||+++.+..+++
T Consensus       151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~  201 (213)
T cd03279         151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQ  201 (213)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCc
Confidence            578999999999999999999999999987778999999999988877654

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.97  E-value=3.4e-33  Score=233.30  Aligned_cols=173  Identities=20%  Similarity=0.279  Sum_probs=131.7

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      |+++|.. +|+++.+++++++     ++++|+||||||||||+++|.          ++.|.+...     ....+++++
T Consensus         6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~-----~~~~~i~~~   64 (212)
T cd03274           6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK-----MRQKKLSDL   64 (212)
T ss_pred             EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH-----hhhhhHHHH
Confidence            6777776 7889999999987     899999999999999999997          234433211     112357777


Q ss_pred             ecccccCCCCCHHHhHHHHHHh--------cCc--cc-c----HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVL--------EGK--QG-N----SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~--------~~~--~~-~----~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++...+++.+++.++..++...        .+.  .. .    ..++++.+++.+..++++..||+|||||++||+|++.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~  144 (212)
T cd03274          65 IHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFAL  144 (212)
T ss_pred             hcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHh
Confidence            7777777777777765443211        111  01 1    1345567788777888999999999999999999974


Q ss_pred             ----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 ----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                          +|+++++||||++||+.++..+.+.+++++ ++.|+|++||+. ++.+.+|
T Consensus       145 ~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~-~~~~~iivs~~~-~~~~~~d  197 (212)
T cd03274         145 HHYKPTPLYVMDEIDAALDFRNVSIVANYIKERT-KNAQFIVISLRN-NMFELAD  197 (212)
T ss_pred             cccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECcH-HHHHhCC
Confidence                579999999999999999999999999985 467899999995 5555555

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.97  E-value=2.7e-32  Score=247.47  Aligned_cols=192  Identities=27%  Similarity=0.337  Sum_probs=151.2

Q ss_pred             CCCcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            7 PLPRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      +.|.+.++||+|.|.+. .++++++|-|..++.+++|||||||||||||++.|.+.|+.|.|.-.-...-     ..+.+
T Consensus       386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~-----~~y~Q  460 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKL-----PRYNQ  460 (614)
T ss_pred             CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccc-----hhhhh
Confidence            45789999999999765 6899999999999999999999999999999999999999999865322211     11111


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      +     +...+.-..++.|++.-........+.++.++.++||. +....++.+||+|||.||.+|+.++.+|.+|+|||
T Consensus       461 h-----~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE  535 (614)
T KOG0927|consen  461 H-----LAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE  535 (614)
T ss_pred             h-----hHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence            1     11233444566666542111112334577889999997 66788999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCCCCC
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRLPPR  212 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~~~~  212 (229)
                      ||+|||..+...+.+.|+++   ..+||+||||...+.++.+ +++.+
T Consensus       536 PtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrlI~qVae-Ei~~c  579 (614)
T KOG0927|consen  536 PTNHLDIETIDALAEAINEF---PGGVVLVSHDFRLISQVAE-EIWVC  579 (614)
T ss_pred             CCcCCCchhHHHHHHHHhcc---CCceeeeechhhHHHHHHH-HhHhh
Confidence            99999999999999999877   4689999999988887754 34433

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.6e-31  Score=240.17  Aligned_cols=216  Identities=20%  Similarity=0.300  Sum_probs=177.4

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..+.++++|++...    .++|+||++.+|||+||.|-=|||+|-|+++|.|..++++|+|+++|+++...++....+..
T Consensus       260 ~~~~l~v~~l~~~~----~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G  335 (500)
T COG1129         260 GEPVLEVRNLSGGG----KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG  335 (500)
T ss_pred             CCcEEEEecCCCCC----ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence            45678999888543    58999999999999999999999999999999999999999999999999877665566778


Q ss_pred             ceEeecc---cccCCCCCHHHhHHHHHH--hc-C--c-----cccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHH
Q 027067           87 LNWLSLK---DAVKEKFTVLDNVQWFEV--LE-G--K-----QGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARL  152 (229)
Q Consensus        87 ~~~~~~~---~~~~~~~tv~e~l~~~~~--~~-~--~-----~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAra  152 (229)
                      ++|++.+   ..++..+++.+|+.+...  .. .  .     ...+.++.+.+++. .-.+..+.+||||.||||.|||.
T Consensus       336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarw  415 (500)
T COG1129         336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARW  415 (500)
T ss_pred             CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHH
Confidence            9999965   468888999999977521  11 1  0     11234567778884 44678999999999999999999


Q ss_pred             HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc-------CCCCCCCCc-chHHhhhh
Q 027067          153 LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL-------RLPPRFPRR-MTLVDMLD  224 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~  224 (229)
                      |+.+|++|||||||.|.|..++..++++++++.++|++||++|.++.++...+|-       .+...+... ++.+.+|.
T Consensus       416 L~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~~tee~im~  495 (500)
T COG1129         416 LATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAIMA  495 (500)
T ss_pred             HhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988753       222223332 56666665


Q ss_pred             hc
Q 027067          225 RA  226 (229)
Q Consensus       225 ~~  226 (229)
                      ++
T Consensus       496 ~a  497 (500)
T COG1129         496 AA  497 (500)
T ss_pred             Hh
Confidence            43

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.3e-31  Score=233.31  Aligned_cols=187  Identities=24%  Similarity=0.304  Sum_probs=149.1

Q ss_pred             CcEEEEeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||.+.|... .-+..||++|++||++-|+|.||||||||++++.|+++|++|+|++||++++.... .+|+.-+
T Consensus       321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l-edYR~Lf  399 (546)
T COG4615         321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL-EDYRKLF  399 (546)
T ss_pred             cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH-HHHHHHH
Confidence            359999999999665 67899999999999999999999999999999999999999999999999987653 5677666


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh---hcC--CCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL---AKE--KARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~---~~~--~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +-++.+..+|+.+--.|+       ......+..+++++.+.+.   .+.  .+..||.|||+|+++.-|++-+.+|+++
T Consensus       400 SavFsDyhLF~~ll~~e~-------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~  472 (546)
T COG4615         400 SAVFSDYHLFDQLLGPEG-------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVL  472 (546)
T ss_pred             HHHhhhHhhhHhhhCCcc-------CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEe
Confidence            655555555443211111       0123345667777777543   333  3568999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHHh
Q 027067          163 DEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ||=-+..||.-+++++.. +-.++++|+||+.||||-.-...
T Consensus       473 DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~  514 (546)
T COG4615         473 DEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH  514 (546)
T ss_pred             ehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh
Confidence            999999999999888764 45578899999999999654443

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.97  E-value=3.2e-31  Score=220.14  Aligned_cols=156  Identities=24%  Similarity=0.316  Sum_probs=118.4

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHH----CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-----ccCC
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLA----GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-----AVKE   98 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-----~~~~   98 (229)
                      ..++++.+| +++|+||||||||||+++|.    |...|++|.+..+.+.+...    .....+.+.++++     .+..
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~----~~~~~v~~~f~~~~~~~~~v~r   89 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREG----EVRAQVKLAFENANGKKYTITR   89 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCC----CCcEEEEEEEEeCCCCEEEEEE
Confidence            344667777 99999999999999999995    99998888775222222211    1234567777665     3344


Q ss_pred             CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHH------HHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           99 KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKR------LQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR------v~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      .+++++|+.+..     ..+..         ...++++.+||+||+||      +++|||++.+|+++|+||||++||+.
T Consensus        90 ~~~~~~~~~~~~-----~~~~~---------~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~  155 (204)
T cd03240          90 SLAILENVIFCH-----QGESN---------WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE  155 (204)
T ss_pred             EhhHhhceeeec-----hHHHH---------HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH
Confidence            457777775421     11111         23378899999999996      78999999999999999999999999


Q ss_pred             HHH-HHHHHHHHHHhC-CcEEEEEeCChhhHH
Q 027067          173 GVR-LLEYIIAEHRKK-GGIVIVATHLPIQIE  202 (229)
Q Consensus       173 ~~~-~l~~~l~~~~~~-g~tii~vtH~~~~~~  202 (229)
                      .++ .+.+++.+++++ +.|||++||+++.+.
T Consensus       156 ~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~  187 (204)
T cd03240         156 NIEESLAEIIEERKSQKNFQLIVITHDEELVD  187 (204)
T ss_pred             HHHHHHHHHHHHHHhccCCEEEEEEecHHHHh
Confidence            999 999999998766 789999999988764

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=6e-31  Score=237.60  Aligned_cols=178  Identities=25%  Similarity=0.279  Sum_probs=131.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      -|.+.+.+..||++.+|++-++++..|-.||++|+||+|||||||+|+.      |.|.....+  +      ..+. .+
T Consensus        80 Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve--q------E~~g-~~  144 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE--Q------EVRG-DD  144 (582)
T ss_pred             ceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch--h------heec-cc
Confidence            4889999999999999999999999999999999999999999999988      444332211  0      0000 01


Q ss_pred             eec-ccccCCCCCHHHhHHHHHHhc-C-ccccHH-HHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSL-KDAVKEKFTVLDNVQWFEVLE-G-KQGNSL-PALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~-~~~~~~~~tv~e~l~~~~~~~-~-~~~~~~-~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++. ...+.....+.+.+.--..+. + ...++. .+|.-+|++ +...++..+||||-|.|++|||||..+||+|||||
T Consensus       145 t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE  224 (582)
T KOG0062|consen  145 TEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE  224 (582)
T ss_pred             hHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC
Confidence            110 011122223333322111111 1 111222 378889996 55678899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ||++||..+..++.+.|..+   +.|+|+||||-+++..+|
T Consensus       225 PTNhLDv~av~WLe~yL~t~---~~T~liVSHDr~FLn~V~  262 (582)
T KOG0062|consen  225 PTNHLDVVAVAWLENYLQTW---KITSLIVSHDRNFLNTVC  262 (582)
T ss_pred             CcccchhHHHHHHHHHHhhC---CceEEEEeccHHHHHHHH
Confidence            99999999999999998776   479999999999998876

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=240.83  Aligned_cols=179  Identities=28%  Similarity=0.381  Sum_probs=150.5

Q ss_pred             CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ...++++|+++.-+ +++.+++.||+|++||.+-|.||||||||||+|+|+|+.+.-+|+|.+-     .       ...
T Consensus       390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-----~-------~~~  457 (604)
T COG4178         390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-----A-------DSA  457 (604)
T ss_pred             cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-----C-------CCc
Confidence            35799999999875 4789999999999999999999999999999999999999989988552     0       123


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhc-CccccHHHHHHHhCCChhhcC------CCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNSLPALELMGLGRLAKE------KARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~~------~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      +-|+||.|.+... |.+|-+.++.... -..++..++|..+||.++.++      --..||+|||||+++||.++++|++
T Consensus       458 ~lflpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~  536 (604)
T COG4178         458 LLFLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKW  536 (604)
T ss_pred             eEEecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCE
Confidence            6789999887766 9999998865432 234567789999999876543      2358999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      ++|||.|++||+.+...+++.+++.. .+.|||-|+|....
T Consensus       537 v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~tl  576 (604)
T COG4178         537 VFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPTL  576 (604)
T ss_pred             EEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchhh
Confidence            99999999999999999999887632 47999999998643

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=2.3e-30  Score=253.92  Aligned_cols=176  Identities=26%  Similarity=0.388  Sum_probs=155.3

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE   98 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (229)
                      +.+++|+||+=-+.||..+||+|+|||||||||++|+|-..-  .+|+|.++|.+..+    ..+++..||+.|++.-.+
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q----~tF~R~~GYvqQ~DiH~~  877 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ----ETFARVSGYVEQQDIHSP  877 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch----hhhccccceeecccccCc
Confidence            457899999999999999999999999999999999997542  47999999998764    235678999999998889


Q ss_pred             CCCHHHhHHHHHHhcCc-----c---ccHHHHHHHhCCChhhcCCCCC----CChhHHHHHHHHHHHhcCC-CeEEEeCC
Q 027067           99 KFTVLDNVQWFEVLEGK-----Q---GNSLPALELMGLGRLAKEKARM----LSMGQRKRLQLARLLAIDR-PIWLLDEP  165 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~~-----~---~~~~~~l~~~~l~~~~~~~~~~----LSgGqkqRv~lAral~~~p-~illlDEP  165 (229)
                      .+||+|-+.|.+.++..     +   +.++++++.++|+++.+.-++.    ||.+||+|+.||--|+.+| .||+||||
T Consensus       878 ~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEP  957 (1391)
T KOG0065|consen  878 ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEP  957 (1391)
T ss_pred             ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCC
Confidence            99999999998776531     1   3367889999999888776665    9999999999999999999 99999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      |||||..+.-.+.++++++...|.||+++-|.|+.
T Consensus       958 TSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~  992 (1391)
T KOG0065|consen  958 TSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSI  992 (1391)
T ss_pred             CCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcH
Confidence            99999999999999999999999999999999753

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.96  E-value=4e-29  Score=223.37  Aligned_cols=180  Identities=23%  Similarity=0.273  Sum_probs=138.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .++..++.+.|++.+ |+-=.=+|..||+++++||||-||||+.++|+|.++|++|+    ..++           .++|
T Consensus       342 lv~y~~~~k~~g~F~-L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~-----------~vSy  405 (591)
T COG1245         342 LVEYPDLKKTYGDFK-LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL-----------KVSY  405 (591)
T ss_pred             eeecchheeecCceE-EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc-----------eEee
Confidence            455666666666443 33334466778999999999999999999999999999997    1111           2344


Q ss_pred             eecccccCCCCCHHHhHHHHHHh-cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVL-EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      -||.-......||.+.+.-.... .....-..++++.++|+...++++.+|||||.|||+||.||.+++++++||||.+.
T Consensus       406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~  485 (591)
T COG1245         406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY  485 (591)
T ss_pred             cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence            44443344566998876543221 11222345778899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067          169 LDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~  205 (229)
                      ||.+.+....+.|+.+.+ .++|.++|.||+-.+.-..
T Consensus       486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvs  523 (591)
T COG1245         486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVS  523 (591)
T ss_pred             ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhh
Confidence            999999999999988754 4789999999987665544

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.96  E-value=2.7e-29  Score=228.10  Aligned_cols=195  Identities=26%  Similarity=0.354  Sum_probs=134.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE--cCEeCCCCchhhhh----
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW--NGHDITQSGIFHQY----   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~--~g~~~~~~~~~~~~----   83 (229)
                      -+.+.|+++.|.++.+++|+.|++.+|+.|||+|+|||||||+|++|.|-..|..-++.+  ..+.+.... .+..    
T Consensus        75 dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~-~~av~~v~  153 (614)
T KOG0927|consen   75 DVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSE-KQAVQAVV  153 (614)
T ss_pred             cceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCch-HHHHHHHh
Confidence            499999999999999999999999999999999999999999999999999886544432  222221110 0000    


Q ss_pred             ------hhcceEeecccccC-CCCCHHHhHHHHHHhc---C--ccccHHHHHHHhCC-ChhhcCCCCCCChhHHHHHHHH
Q 027067           84 ------KLQLNWLSLKDAVK-EKFTVLDNVQWFEVLE---G--KQGNSLPALELMGL-GRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        84 ------~~~~~~~~~~~~~~-~~~tv~e~l~~~~~~~---~--~~~~~~~~l~~~~l-~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                            +..+.+...+..-. +...-.+-...+....   .  .+.++..+|.-+|. .+..++....||||++.|++||
T Consensus       154 ~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLA  233 (614)
T KOG0927|consen  154 METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALA  233 (614)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHH
Confidence                  00000000000000 0000000000001100   0  11123344555565 4678999999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+|..+|++|||||||+|||+.+..++.+.|..+..  .++++++|+.+++..+|..
T Consensus       234 r~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~QDfln~vCT~  288 (614)
T KOG0927|consen  234 RALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQDFLNGVCTN  288 (614)
T ss_pred             HHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecchhhhhhHhhh
Confidence            999999999999999999999999999999987642  2899999999999998853

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.96  E-value=2.1e-29  Score=206.43  Aligned_cols=198  Identities=16%  Similarity=0.280  Sum_probs=155.3

Q ss_pred             CcEEEEeEEEEe----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEEcCEeCCCCchh
Q 027067            9 PRLLLKNVSCMR----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP----SAGEILWNGHDITQSGIF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p----~~G~I~~~g~~~~~~~~~   80 (229)
                      +.+.+.|++..+    |..++++++|++++.||+-|++|+||||||-..|+|+|..+-    +.-..++++.++-+..+.
T Consensus         2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr   81 (330)
T COG4170           2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR   81 (330)
T ss_pred             CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence            467889999877    457899999999999999999999999999999999999763    355667777776665543


Q ss_pred             hhh---hhcceEeeccccc--CCCCCH----HHhHH-------HHHHhcCccccHHHHHHHhCCCh---hhcCCCCCCCh
Q 027067           81 HQY---KLQLNWLSLKDAV--KEKFTV----LDNVQ-------WFEVLEGKQGNSLPALELMGLGR---LAKEKARMLSM  141 (229)
Q Consensus        81 ~~~---~~~~~~~~~~~~~--~~~~tv----~e~l~-------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~LSg  141 (229)
                      ++.   ...+++++|++.-  .+.-++    .+|+-       ++..+...+.++.++|.++|+.+   ....+|.+|..
T Consensus        82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe  161 (330)
T COG4170          82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE  161 (330)
T ss_pred             HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence            221   2456778887653  333222    22221       11122223456788999999964   45789999999


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||-|+|+||.|++.+|++||.||||+++|+.++..+..++..+.+ +|.||+++|||+..+.+.+|
T Consensus       162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d  227 (330)
T COG4170         162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWAD  227 (330)
T ss_pred             CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhh
Confidence            999999999999999999999999999999999999999988754 47899999999999888764

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.96  E-value=2.7e-28  Score=248.61  Aligned_cols=192  Identities=21%  Similarity=0.274  Sum_probs=136.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHH---------HHHCCCCCCcc----E----EEEcC
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLR---------MLAGFSKPSAG----E----ILWNG   71 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~---------~i~Gl~~p~~G----~----I~~~g   71 (229)
                      +.+++++++.     ..|+++||+|++||+++|+|+||||||||++         .+.|...+..+    .    |.++-
T Consensus       599 ~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ  673 (1809)
T PRK00635        599 GTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR  673 (1809)
T ss_pred             CeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence            3688888763     3799999999999999999999999999999         66665433111    1    22322


Q ss_pred             EeCCCC---------chhhhhh---------hcce-----Eeec--------------------c---------------
Q 027067           72 HDITQS---------GIFHQYK---------LQLN-----WLSL--------------------K---------------   93 (229)
Q Consensus        72 ~~~~~~---------~~~~~~~---------~~~~-----~~~~--------------------~---------------   93 (229)
                      .++...         ..+...+         +..+     |.++                    +               
T Consensus       674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~  753 (1809)
T PRK00635        674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP  753 (1809)
T ss_pred             CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence            222110         0000000         0000     1111                    0               


Q ss_pred             ---cccCCCCCHHHhHHHHHHhc----C-c--cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHh---cCCCe
Q 027067           94 ---DAVKEKFTVLDNVQWFEVLE----G-K--QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLA---IDRPI  159 (229)
Q Consensus        94 ---~~~~~~~tv~e~l~~~~~~~----~-~--~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~---~~p~i  159 (229)
                         ...+...||.|++.+.....    . .  ..+..++++.+|+.+. .++++.+|||||+||++||+||+   .+|++
T Consensus       754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~L  833 (1809)
T PRK00635        754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTL  833 (1809)
T ss_pred             HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence               01345678888887643211    0 0  0112257888999876 79999999999999999999998   69999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||||+|||+..++.+.+++.+++++|.|||++||+++.+ .++|
T Consensus       834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aD  879 (1809)
T PRK00635        834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVAD  879 (1809)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCC
Confidence            999999999999999999999999988899999999999988 5654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=6.2e-29  Score=221.54  Aligned_cols=180  Identities=28%  Similarity=0.400  Sum_probs=145.4

Q ss_pred             CCCcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            7 PLPRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         7 ~~~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      .+|.|-+.||+|.| +.++++++++|-|.-...+||+||||.||||||++|.|-+.|+.|+.+-+            .+.
T Consensus       583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn------------hrL  650 (807)
T KOG0066|consen  583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN------------HRL  650 (807)
T ss_pred             CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc------------cee
Confidence            45789999999999 67889999999999999999999999999999999999999999987542            233


Q ss_pred             cceEeeccc--ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           86 QLNWLSLKD--AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        86 ~~~~~~~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ++||..|+.  .+...-|..|++.-.  +.-....++..|-.+||....+ -.+..||||||-||++|-.-+..|+||||
T Consensus       651 ~iG~FdQh~~E~L~~Eetp~EyLqr~--FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlIL  728 (807)
T KOG0066|consen  651 RIGWFDQHANEALNGEETPVEYLQRK--FNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLIL  728 (807)
T ss_pred             eeechhhhhHHhhccccCHHHHHHHh--cCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEe
Confidence            566655542  343444666655421  1223345677888999965544 46899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ||||++||.++...+.+.|+++   +..|||||||...+.+
T Consensus       729 DEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRLi~e  766 (807)
T KOG0066|consen  729 DEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERLIVE  766 (807)
T ss_pred             cCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccceeee
Confidence            9999999999999999999887   3579999999766644

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.96  E-value=7.5e-28  Score=236.01  Aligned_cols=103  Identities=29%  Similarity=0.457  Sum_probs=88.6

Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHH
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVR  175 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~  175 (229)
                      +|+.|++.|+....+. .+..+.++.+||.. .+++++.+|||||+||+.||++|+.+|   +++||||||+|||+..++
T Consensus       792 ltv~E~l~~f~~~~~i-~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~  870 (943)
T PRK00349        792 MTVEEALEFFEAIPKI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR  870 (943)
T ss_pred             CcHHHHHHHHHhchhh-hHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence            5777777776543321 23457889999976 478999999999999999999999999   999999999999999999


Q ss_pred             HHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          176 LLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       176 ~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .+.+++++++++|.|||++||+++.+..
T Consensus       871 ~L~~~L~~l~~~G~TVIiitH~~~~i~~  898 (943)
T PRK00349        871 KLLEVLHRLVDKGNTVVVIEHNLDVIKT  898 (943)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence            9999999998889999999999998853

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=215.15  Aligned_cols=203  Identities=20%  Similarity=0.312  Sum_probs=173.3

Q ss_pred             CCCCCCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC-CCCchhh
Q 027067            4 RKPPLPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFH   81 (229)
Q Consensus         4 ~~~~~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~~~~~   81 (229)
                      ..|..+.|++++|++.-. +...+++|||+|.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ...++..
T Consensus       251 ~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~  330 (501)
T COG3845         251 STPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRE  330 (501)
T ss_pred             CCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHH
Confidence            344567899999998764 36889999999999999999999999999999999999999999999999997 5556656


Q ss_pred             hhhhcceEeeccc---ccCCCCCHHHhHHHHHHhc----Cc--------cccHHHHHHHhCCC-hhhcCCCCCCChhHHH
Q 027067           82 QYKLQLNWLSLKD---AVKEKFTVLDNVQWFEVLE----GK--------QGNSLPALELMGLG-RLAKEKARMLSMGQRK  145 (229)
Q Consensus        82 ~~~~~~~~~~~~~---~~~~~~tv~e~l~~~~~~~----~~--------~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkq  145 (229)
                      .....++|+|.+.   .+.+.+|+.||+.+.....    ..        .....+.++.+++. .-...+..+||||.+|
T Consensus       331 ~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQ  410 (501)
T COG3845         331 RRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQ  410 (501)
T ss_pred             HHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCccee
Confidence            6778899999764   5788899999987643221    10        12345677888875 4456678999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+-+||-|..+|++||+-+||.|||..+.+.+.+.+.+.++.|+.|+++|-|++++-..+|
T Consensus       411 K~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsD  471 (501)
T COG3845         411 KLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSD  471 (501)
T ss_pred             hhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999988875

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1.7e-28  Score=202.97  Aligned_cols=166  Identities=19%  Similarity=0.177  Sum_probs=111.8

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      ..++++++++.+| +.+|+||||||||||+.+|.-....+.. ....|..+...-........+.+.+++..++.     
T Consensus        10 r~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----   82 (198)
T cd03276          10 MCHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----   82 (198)
T ss_pred             cceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----
Confidence            3457788899887 8899999999999999999754332211 01112211000000001223444555444333     


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL----AIDRPIWLLDEPSVALDYDGVRLLEY  179 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral----~~~p~illlDEPt~~LD~~~~~~l~~  179 (229)
                       |-...    .....+.++++.   .+..++++.+||+|||||++||+|+    +.+|+++||||||++||+..+..+.+
T Consensus        83 -~~~~~----~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~  154 (198)
T cd03276          83 -NPLCV----LSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD  154 (198)
T ss_pred             -CcCCH----HHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence             10000    001233445544   5667889999999999999999999    58999999999999999999999999


Q ss_pred             HHHHHHhC---CcEEEEEeCChhhHHhh
Q 027067          180 IIAEHRKK---GGIVIVATHLPIQIEDA  204 (229)
Q Consensus       180 ~l~~~~~~---g~tii~vtH~~~~~~~~  204 (229)
                      ++.+..++   +.|||++||+++++.++
T Consensus       155 ~l~~~~~~~~~~~~iii~th~~~~i~~~  182 (198)
T cd03276         155 LLVKEAKKQPGRQFIFITPQDISGLASS  182 (198)
T ss_pred             HHHHHHhcCCCcEEEEEECCcccccccc
Confidence            99887543   35899999999888764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=1e-28  Score=210.68  Aligned_cols=188  Identities=19%  Similarity=0.150  Sum_probs=118.8

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe--CCCCch----hhhhh
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD--ITQSGI----FHQYK   84 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~--~~~~~~----~~~~~   84 (229)
                      ++++|. ++|.+...     +.+.++ +++|+||||||||||+.+|+++..++.|+++..+..  +.....    .....
T Consensus         4 i~l~nf-~~~~~~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~   76 (247)
T cd03275           4 LELENF-KSYKGRHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAY   76 (247)
T ss_pred             EEEECc-cccCCCee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEE
Confidence            667775 45644332     233344 999999999999999999999998877877654321  110000    00111


Q ss_pred             hcceEeeccccc-CCCCCHHHhHH-HHHHh-cCccccHHHHHHHhCCCh--------------hh--------cCCCCCC
Q 027067           85 LQLNWLSLKDAV-KEKFTVLDNVQ-WFEVL-EGKQGNSLPALELMGLGR--------------LA--------KEKARML  139 (229)
Q Consensus        85 ~~~~~~~~~~~~-~~~~tv~e~l~-~~~~~-~~~~~~~~~~l~~~~l~~--------------~~--------~~~~~~L  139 (229)
                      ..+.|..++... ....++.+... +...- .....+..+.++.+|+..              +.        ++++.+|
T Consensus        77 v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~L  156 (247)
T cd03275          77 VTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNL  156 (247)
T ss_pred             EEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHc
Confidence            122332222110 00001111100 00000 001223456677777731              12        2345899


Q ss_pred             ChhHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          140 SMGQRKRLQLARLLAID----RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       140 SgGqkqRv~lAral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+|||||++||+|++.+    |+++||||||++||+..+..+.+++.+++++|.+||++||+.+.+ ..+|
T Consensus       157 S~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d  226 (247)
T cd03275         157 SGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKAD  226 (247)
T ss_pred             CHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCC
Confidence            99999999999999875    899999999999999999999999999877789999999997665 4444

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=1.7e-27  Score=215.26  Aligned_cols=183  Identities=24%  Similarity=0.308  Sum_probs=146.1

Q ss_pred             CCCcEEEEeEEEEeCCe--eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            7 PLPRLLLKNVSCMRNAQ--QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~--~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      .+|.+++.+|++.|...  +.+.++++.++.-+.++++|+||+||||++|++.|-..|..|.+.+.+.            
T Consensus       359 ~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r------------  426 (582)
T KOG0062|consen  359 SPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPR------------  426 (582)
T ss_pred             CCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeeccc------------
Confidence            45789999999999643  5999999999999999999999999999999999999999998876542            


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhc-C-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLE-G-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      .+++|..|...-+..+.|-. +.+....+ + .+++++..+..+|+. ++..+.+..||||||-||++|.+...+|.+|+
T Consensus       427 ~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLV  505 (582)
T KOG0062|consen  427 LRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLV  505 (582)
T ss_pred             ceecchhHhhhhHHHHHhHH-HHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEE
Confidence            23444444322111222211 12222221 2 345677889999996 66777789999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      |||||++||..+...+.+.|+.+   +..||+||||.+++...|
T Consensus       506 LDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~fi~~~c  546 (582)
T KOG0062|consen  506 LDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEFISSLC  546 (582)
T ss_pred             ecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHHHhhcC
Confidence            99999999999999988888877   457999999999999887

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.95  E-value=1.4e-26  Score=226.73  Aligned_cols=104  Identities=29%  Similarity=0.459  Sum_probs=85.7

Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhc---CCCeEEEeCCCCCCCHHHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAI---DRPIWLLDEPSVALDYDGVRL  176 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~---~p~illlDEPt~~LD~~~~~~  176 (229)
                      ||.|.+.|+...... .+..+.++.+||.. .+++++.+|||||+||+.||++|+.   +|+++||||||+|||+..++.
T Consensus       791 tv~e~~~f~~~~~~i-~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~  869 (924)
T TIGR00630       791 TVEEAYEFFEAVPSI-SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKK  869 (924)
T ss_pred             cHHHHHHHHHhccch-hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHH
Confidence            455555555432211 23456788899975 4799999999999999999999997   599999999999999999999


Q ss_pred             HHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          177 LEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       177 l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+++.+++++|.|||++||+++.+. .+|
T Consensus       870 L~~~L~~l~~~G~TVIvi~H~~~~i~-~aD  898 (924)
T TIGR00630       870 LLEVLQRLVDQGNTVVVIEHNLDVIK-TAD  898 (924)
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHH-hCC
Confidence            99999999888999999999999885 444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.94  E-value=3.9e-26  Score=208.86  Aligned_cols=182  Identities=24%  Similarity=0.287  Sum_probs=146.4

Q ss_pred             CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++++++|+..-+  +..+++|+||+|.+|+-+-|+||||||||+|+|+++|+.+..+|++..-.+.-         ...
T Consensus       432 n~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~---------~~~  502 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG---------PKD  502 (659)
T ss_pred             ceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC---------CCc
Confidence            4799999998764  46688999999999999999999999999999999999999999997643211         134


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHh-c-----CccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHH
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVL-E-----GKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQL  149 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~-~-----~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~l  149 (229)
                      +-|+||.|.+... |.+|.+.++... .     ...++....|+.++|.++..+           -...||+||+||+++
T Consensus       503 lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~  581 (659)
T KOG0060|consen  503 LFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF  581 (659)
T ss_pred             eEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence            7899999887666 999988775221 1     112345566777777655432           235899999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ||.+..+|++-||||-||++|......+++.+++.   |.|.|-|+|..+....
T Consensus       582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkSL~kf  632 (659)
T KOG0060|consen  582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKSLWKF  632 (659)
T ss_pred             HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHHHHhh
Confidence            99999999999999999999999998988887654   8999999998766543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.93  E-value=1.6e-25  Score=200.42  Aligned_cols=166  Identities=26%  Similarity=0.334  Sum_probs=121.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--------hhhh-----------cceEeec
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--------QYKL-----------QLNWLSL   92 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--------~~~~-----------~~~~~~~   92 (229)
                      ...+|+++||+|+||-||||-+|+|+|.+.|.=|+.  ++.+ .......        .|-.           ++.|+--
T Consensus        96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp-~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~  172 (591)
T COG1245          96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPP-SWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL  172 (591)
T ss_pred             CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCC-CHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence            356899999999999999999999999999987754  2211 1110000        0100           0111100


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      -|..+.. +|.|-+.-.    .......++.+.++|...+++.+++|||||.||++||.|++++++++++|||+|-||..
T Consensus       173 iPk~~KG-~v~elLk~~----de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~  247 (591)
T COG1245         173 IPKVVKG-KVGELLKKV----DERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIR  247 (591)
T ss_pred             HHHHhcc-hHHHHHHhh----hhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHH
Confidence            0111111 333322211    01134678899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      .+-...++++++.+.+++||+|.||+..+.-..
T Consensus       248 qRl~~ar~Irel~~~~k~ViVVEHDLavLD~ls  280 (591)
T COG1245         248 QRLNAARVIRELAEDGKYVIVVEHDLAVLDYLS  280 (591)
T ss_pred             HHHHHHHHHHHHhccCCeEEEEechHHHHHHhh
Confidence            999999999999888999999999987776554

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.91  E-value=2e-24  Score=178.62  Aligned_cols=133  Identities=22%  Similarity=0.271  Sum_probs=97.8

Q ss_pred             eeeeeeEEEeCCc-EEEEEcCCCccHHHHHHHHH--------CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccc
Q 027067           25 ILRHVNISIHDGG-ALVLTGTNGSGKSTFLRMLA--------GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA   95 (229)
Q Consensus        25 iL~~vsl~i~~Ge-~~~iiG~NGsGKSTLl~~i~--------Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~   95 (229)
                      .+.++||++.+|+ +++|+||||||||||||+|+        |..-|....+                  .++|..|.  
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~------------------~~~~~~~~--   75 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS------------------SLPVFENI--   75 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc------------------cCcCccEE--
Confidence            3558999999995 89999999999999999998        4443321111                  01111110  


Q ss_pred             cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 027067           96 VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR  175 (229)
Q Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~  175 (229)
                                                 +..++..+..+...+++|+||+|++.+++++ .+|+++++||||+++|+..+.
T Consensus        76 ---------------------------~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~  127 (200)
T cd03280          76 ---------------------------FADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGA  127 (200)
T ss_pred             ---------------------------EEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHH
Confidence                                       0012222345566789999999999999884 899999999999999999888


Q ss_pred             HHH-HHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          176 LLE-YIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       176 ~l~-~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+. .+++.+++.+.++|++||+. ++...++
T Consensus       128 ~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d  158 (200)
T cd03280         128 ALAIAILEELLERGALVIATTHYG-ELKAYAY  158 (200)
T ss_pred             HHHHHHHHHHHhcCCEEEEECCHH-HHHHHHh
Confidence            775 57788877789999999985 4555554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.91  E-value=4.2e-24  Score=174.58  Aligned_cols=192  Identities=20%  Similarity=0.244  Sum_probs=141.3

Q ss_pred             CCcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            8 LPRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         8 ~~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ...+++.++.|+|. ..+++-|+|++++.|....++|.||||||||||+++|-.-...|.|.+.|.+.-...... ....
T Consensus        11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~-~Sgd   89 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE-SSGD   89 (291)
T ss_pred             cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc-ccCc
Confidence            45799999999995 468999999999999999999999999999999999987777799999997643210000 0011


Q ss_pred             ceEee----------cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           87 LNWLS----------LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        87 ~~~~~----------~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      ..|+.          -+-.+-..+++...|. .-. .....+.+.+...++++  ..-+.+.+|.|||+||.|++.|+..
T Consensus        90 l~YLGgeW~~~~~~agevplq~D~sae~mif-gV~-g~dp~Rre~LI~iLDId--l~WRmHkvSDGqrRRVQicMGLL~P  165 (291)
T KOG2355|consen   90 LSYLGGEWSKTVGIAGEVPLQGDISAEHMIF-GVG-GDDPERREKLIDILDID--LRWRMHKVSDGQRRRVQICMGLLKP  165 (291)
T ss_pred             eeEecccccccccccccccccccccHHHHHh-hcc-CCChhHhhhhhhheecc--ceEEEeeccccchhhhHHHHhcccc
Confidence            12211          0111222445544332 111 11223344555665553  3446789999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~  204 (229)
                      =++|+|||-|-.||..++..+.+++++-.+ +|.||+++||.-+-++..
T Consensus       166 fkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~W  214 (291)
T KOG2355|consen  166 FKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETW  214 (291)
T ss_pred             eeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhc
Confidence            999999999999999999999999988655 589999999987766664

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.90  E-value=1.1e-23  Score=176.15  Aligned_cols=76  Identities=20%  Similarity=0.159  Sum_probs=64.0

Q ss_pred             hhhcCCCCCCChhHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCChhhHHh
Q 027067          130 RLAKEKARMLSMGQRKRLQLARLL----AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-G-GIVIVATHLPIQIED  203 (229)
Q Consensus       130 ~~~~~~~~~LSgGqkqRv~lAral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g-~tii~vtH~~~~~~~  203 (229)
                      +..+..+.+||+|||||+.+|+++    +.+|+++|+||||++||+..+..+.+.+..++++ | .|+|++||++..+..
T Consensus       118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~  197 (213)
T cd03277         118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLN  197 (213)
T ss_pred             CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCc
Confidence            345678899999999999877654    5899999999999999999999999999998765 5 579999999766555


Q ss_pred             hh
Q 027067          204 AM  205 (229)
Q Consensus       204 ~~  205 (229)
                      .+
T Consensus       198 ~~  199 (213)
T cd03277         198 YH  199 (213)
T ss_pred             cc
Confidence            44

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.90  E-value=4.3e-24  Score=176.76  Aligned_cols=140  Identities=18%  Similarity=0.129  Sum_probs=98.5

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      ++.++++++++.  |++++|+||||||||||+|+|+|...     +.+.|.++...          .+++|...++..+|
T Consensus        13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~----------~~~~q~~~l~~~~~   75 (199)
T cd03283          13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS----------SFELPPVKIFTSIR   75 (199)
T ss_pred             CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC----------ccCcccceEEEecc
Confidence            456788887775  79999999999999999999988553     12345444321          12334456778889


Q ss_pred             HHHhHHHHHHhcC-ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HH
Q 027067          102 VLDNVQWFEVLEG-KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EY  179 (229)
Q Consensus       102 v~e~l~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~  179 (229)
                      +.||+.+...... ...+..++++.++.                          .+|+++|+||||+|+|+.....+ ..
T Consensus        76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~--------------------------~~p~llllDEp~~glD~~~~~~l~~~  129 (199)
T cd03283          76 VSDDLRDGISYFYAELRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGTNSRERQAASAA  129 (199)
T ss_pred             chhccccccChHHHHHHHHHHHHHhccC--------------------------CCCeEEEEecccCCCCHHHHHHHHHH
Confidence            9998865321110 01223344444431                          69999999999999999987655 55


Q ss_pred             HHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          180 IIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       180 ~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +++.+.+.+.++|++||+++.+...
T Consensus       130 ll~~l~~~~~tiiivTH~~~~~~~~  154 (199)
T cd03283         130 VLKFLKNKNTIGIISTHDLELADLL  154 (199)
T ss_pred             HHHHHHHCCCEEEEEcCcHHHHHhh
Confidence            7788777789999999999887654

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.90  E-value=2.8e-23  Score=184.40  Aligned_cols=165  Identities=28%  Similarity=0.429  Sum_probs=128.6

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--------CCCCccEEEEcCEeCCCCchhhhhhhcceEeec--
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--------SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL--   92 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~--   92 (229)
                      ..+++|+||++++|++++|+|+|||||||+|++|+|.        ++|++|.|.+--..++.            .+|-  
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a------------~iPge~  463 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA------------LIPGEY  463 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhh------------ccCccc
Confidence            4589999999999999999999999999999999997        57889988774322221            1111  


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh--hhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR--LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      ++.+- ..|+.|.+.   ...++...+.++|.+.|+.+  +..+++++||.|||.|+.||++++..|.+++.||-.|+||
T Consensus       464 Ep~f~-~~tilehl~---s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD  539 (593)
T COG2401         464 EPEFG-EVTILEHLR---SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLD  539 (593)
T ss_pred             ccccC-chhHHHHHh---hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcC
Confidence            22222 345555542   11122334678899999964  3467899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHh
Q 027067          171 YDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIED  203 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~  203 (229)
                      +.+...+..-+.++. +.|.|++++||.++.+..
T Consensus       540 ~~TA~rVArkiselaRe~giTlivvThrpEv~~A  573 (593)
T COG2401         540 ELTAVRVARKISELAREAGITLIVVTHRPEVGNA  573 (593)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhc
Confidence            999888888888875 559999999999876544

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.90  E-value=8.3e-24  Score=192.00  Aligned_cols=177  Identities=21%  Similarity=0.327  Sum_probs=136.5

Q ss_pred             EEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      |.++|+-+-- .+..++..++|.|++|-.+.|+||||||||+|+|+|.|+.+...|...+-            ....+.|
T Consensus       482 I~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P------------~~~~mFY  549 (728)
T KOG0064|consen  482 IILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP------------RPNNIFY  549 (728)
T ss_pred             eEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC------------CCcceEe
Confidence            7788887654 56778899999999999999999999999999999999999876655431            1224788


Q ss_pred             eecccccCCCCCHHHhHHHHHHhc-----C-ccccHHHHHHHhCCChhhcCCC---------CCCChhHHHHHHHHHHHh
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLE-----G-KQGNSLPALELMGLGRLAKEKA---------RMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~-----~-~~~~~~~~l~~~~l~~~~~~~~---------~~LSgGqkqRv~lAral~  154 (229)
                      +||.|.+- .-|.+|.+.++....     + .+.+....|..+.|+..+.+-.         ..||||||||+.+||.+.
T Consensus       550 IPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~y  628 (728)
T KOG0064|consen  550 IPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFY  628 (728)
T ss_pred             ccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHh
Confidence            99888765 447777765542211     1 1234556666666665554432         479999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ++|+.-+|||-||+..+.-...+.+..+.   .|.+.|-+||.+....-
T Consensus       629 HrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpslwk~  674 (728)
T KOG0064|consen  629 HRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSLWKY  674 (728)
T ss_pred             cCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccHHHH
Confidence            99999999999999998877777776544   48999999999877654

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.90  E-value=7.6e-24  Score=189.15  Aligned_cols=193  Identities=20%  Similarity=0.333  Sum_probs=140.4

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC---CCCCccEEEEcCEeCCCCc------hh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF---SKPSAGEILWNGHDITQSG------IF   80 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl---~~p~~G~I~~~g~~~~~~~------~~   80 (229)
                      -|.++|.+.+-.++.++.|.||.|-.|..||++||||-||||||+-|+.-   ++| .=.|.+..+.+....      ..
T Consensus       264 DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPp-nIDvLlCEQEvvad~t~Ai~tvl  342 (807)
T KOG0066|consen  264 DIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPP-NIDVLLCEQEVVADSTSAIDTVL  342 (807)
T ss_pred             cceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCC-CCceEeeeeeeeecCcHHHHHHH
Confidence            48999999999999999999999999999999999999999999999864   344 334555555442211      00


Q ss_pred             hhhhhcceEeeccc----cc-CCCCCHHHhHHH-HHHh-----cCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHH
Q 027067           81 HQYKLQLNWLSLKD----AV-KEKFTVLDNVQW-FEVL-----EGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQ  148 (229)
Q Consensus        81 ~~~~~~~~~~~~~~----~~-~~~~tv~e~l~~-~~~~-----~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~  148 (229)
                      ..-.++..++-...    .+ .-..|+.|.+.- +..+     ...+.+++.+|.-+|+. +..+++...+|||-|.||+
T Consensus       343 ~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvS  422 (807)
T KOG0066|consen  343 KADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVS  422 (807)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehh
Confidence            00000111100000    00 112344443321 1111     11234566778888886 5678888999999999999


Q ss_pred             HHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          149 LARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||..+|-+|+|||||++||..+..++.++++.++   +|+++||||..++.++|+
T Consensus       423 LARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQgFLD~VCt  477 (807)
T KOG0066|consen  423 LARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQGFLDSVCT  477 (807)
T ss_pred             HHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccchHHHHHH
Confidence            9999999999999999999999999999999998885   599999999999999885

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.89  E-value=6.4e-23  Score=177.67  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=59.1

Q ss_pred             CCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          137 RMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       137 ~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ..|||||+||+++|++++.    +|+++|+||||++||+..+..+.+.+.++.+ +.|+|++||++... ..+|
T Consensus       169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~~~-~~~d  240 (276)
T cd03241         169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQVA-AMAD  240 (276)
T ss_pred             hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHHHH-HhcC
Confidence            3499999999999997654    9999999999999999999999999998754 78999999999854 4443

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.89  E-value=1.1e-22  Score=165.65  Aligned_cols=64  Identities=33%  Similarity=0.340  Sum_probs=59.3

Q ss_pred             CChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          139 LSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       139 LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      ||+||+||++|||+++    .+|+++|+|||+++||+..++.+.+.+.++.+.|.++|++||+++.+.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~  162 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFE  162 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHh
Confidence            9999999999999996    699999999999999999999999999998777899999999987664

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.89  E-value=7.5e-23  Score=163.95  Aligned_cols=131  Identities=31%  Similarity=0.383  Sum_probs=94.8

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE-eecccccCCCCCHHH
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW-LSLKDAVKEKFTVLD  104 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~tv~e  104 (229)
                      ....++.+.++.+.+|+|||||||||+++++....-..+|.+.... ..           +.++ ++.....+       
T Consensus        11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~-----------~~g~~~~~~~~~~-------   71 (162)
T cd03227          11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV-----------KAGCIVAAVSAEL-------   71 (162)
T ss_pred             EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc-----------cCCCcceeeEEEE-------
Confidence            3455566666679999999999999999998777655555443311 10           0110 11100000       


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYI  180 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~  180 (229)
                         .+                         ...+||+||+||+++|++|+.    +|+++|+|||++++|+.....+.+.
T Consensus        72 ---i~-------------------------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~  123 (162)
T cd03227          72 ---IF-------------------------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEA  123 (162)
T ss_pred             ---eh-------------------------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence               00                         001299999999999999987    7899999999999999999988888


Q ss_pred             HHHHHhCCcEEEEEeCChhhHHh
Q 027067          181 IAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       181 l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +.++..++.++|++||+++....
T Consensus       124 l~~~~~~~~~vii~TH~~~~~~~  146 (162)
T cd03227         124 ILEHLVKGAQVIVITHLPELAEL  146 (162)
T ss_pred             HHHHHhcCCEEEEEcCCHHHHHh
Confidence            88875558899999999988765

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.88  E-value=1.2e-22  Score=168.71  Aligned_cols=144  Identities=17%  Similarity=0.120  Sum_probs=108.0

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      .+..+.+|+++++.+|++++|+||||+||||++|+++++.                      ...++|...  +.....+
T Consensus        14 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------------~la~~G~~v--pa~~~~l   69 (204)
T cd03282          14 KKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------------IMAQIGCFV--PAEYATL   69 (204)
T ss_pred             CCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------------HHHHcCCCc--chhhcCc
Confidence            3567899999999999999999999999999999998874                      111222110  2233444


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH-HHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV-RLLEY  179 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~-~~l~~  179 (229)
                      ++.|++.                ..++..+..++..+++|.|++|+ ..+.+++.+|+++|+|||++|+|+... .....
T Consensus        70 ~~~d~I~----------------~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~  132 (204)
T cd03282          70 PIFNRLL----------------SRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAISLA  132 (204)
T ss_pred             cChhhee----------------EecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHHHHH
Confidence            5556542                22334444567788999999975 555668899999999999999999754 45566


Q ss_pred             HHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          180 IIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       180 ~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      +++.+.+.+.++|++||+.+.++.+.
T Consensus       133 il~~l~~~~~~~i~~TH~~~l~~~~~  158 (204)
T cd03282         133 ILECLIKKESTVFFATHFRDIAAILG  158 (204)
T ss_pred             HHHHHHhcCCEEEEECChHHHHHHhh
Confidence            77888778999999999998887644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.87  E-value=8.9e-22  Score=165.54  Aligned_cols=139  Identities=20%  Similarity=0.234  Sum_probs=99.7

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce-EeecccccCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN-WLSLKDAVKEK   99 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   99 (229)
                      +.+.+.+|++++..+|++++|+||||+|||||+++++=.                      .+..++| |+|......+ 
T Consensus        15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~----------------------~~la~~g~~vpa~~~~~~-   71 (222)
T cd03285          15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI----------------------VLMAQIGCFVPCDSADIP-   71 (222)
T ss_pred             CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH----------------------HHHHHhCCCcCcccEEEe-
Confidence            456789999999999999999999999999999999810                      1223344 4443321111 


Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHH
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLLDEP---SVALDYDGV  174 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illlDEP---t~~LD~~~~  174 (229)
                        .                ..+++..+++.+.   ....+|.|++|++.+++++  +.+|+++|||||   |+++|+.+.
T Consensus        72 --~----------------~~~il~~~~l~d~---~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~  130 (222)
T cd03285          72 --I----------------VDCILARVGASDS---QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGL  130 (222)
T ss_pred             --c----------------cceeEeeeccccc---hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHH
Confidence              1                1123344555433   2578999999999999999  899999999999   899999876


Q ss_pred             HHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          175 RLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       175 ~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ...  +++.+.+ .|.++|++||+ .++.+.++
T Consensus       131 ~~~--il~~l~~~~~~~vlisTH~-~el~~~~~  160 (222)
T cd03285         131 AWA--IAEYIATQIKCFCLFATHF-HELTALAD  160 (222)
T ss_pred             HHH--HHHHHHhcCCCeEEEEech-HHHHHHhh
Confidence            432  2233333 47899999996 66666665

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.84  E-value=1.5e-20  Score=155.58  Aligned_cols=137  Identities=18%  Similarity=0.160  Sum_probs=90.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067           27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~  105 (229)
                      -..|+++.+|++++|+||||||||||||+|++.. .+..|.....            ....+++..   .++..+..   
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~------------~~~~i~~~d---qi~~~~~~---   81 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA------------ESASIPLVD---RIFTRIGA---   81 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc------------cccccCCcC---EEEEEecC---
Confidence            4556677789999999999999999999999543 2233321110            011122111   11111111   


Q ss_pred             HHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHH
Q 027067          106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EYIIAEH  184 (229)
Q Consensus       106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~  184 (229)
                                             .+......+.+|.+++| +..+.+++.+|+++|+||||+|+|+.....+ ..+++.+
T Consensus        82 -----------------------~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l  137 (202)
T cd03243          82 -----------------------EDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHL  137 (202)
T ss_pred             -----------------------cccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence                                   11123334566766665 6666788899999999999999999877655 4567777


Q ss_pred             HhCCcEEEEEeCChhhHHhhh
Q 027067          185 RKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       185 ~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ++.+.++|++||+.+.+..+.
T Consensus       138 ~~~~~~vi~~tH~~~~~~~~~  158 (202)
T cd03243         138 LEKGCRTLFATHFHELADLPE  158 (202)
T ss_pred             HhcCCeEEEECChHHHHHHhh
Confidence            777899999999987766543

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.83  E-value=7.2e-20  Score=187.45  Aligned_cols=86  Identities=28%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             HHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067          119 SLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA  194 (229)
Q Consensus       119 ~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v  194 (229)
                      ..+.|..+||.-+ +.++..+|||||.||+-||.-|..+   +.+++|||||.||++...+.+..+++.+.+.|.|||+|
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivi 1758 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYI 1758 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            3456888899744 6899999999999999999999875   78999999999999999999999999999999999999


Q ss_pred             eCChhhHHhh
Q 027067          195 THLPIQIEDA  204 (229)
Q Consensus       195 tH~~~~~~~~  204 (229)
                      .||++.+..+
T Consensus      1759 eH~~~~i~~a 1768 (1809)
T PRK00635       1759 DHDPALLKQA 1768 (1809)
T ss_pred             eCCHHHHHhC
Confidence            9999988874

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=1.2e-20  Score=185.94  Aligned_cols=172  Identities=28%  Similarity=0.383  Sum_probs=144.0

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK   99 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
                      ..+|+|+|.-+++|+.+.++||.||||||||++++|-..-   ..|+|.++|.+......    +..++|.+|++.-++.
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~----~~~~aY~~e~DvH~p~  203 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP----KKTVAYNSEQDVHFPE  203 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc----CceEEeccccccccce
Confidence            4699999999999999999999999999999999998753   35799999998765321    5678999999999999


Q ss_pred             CCHHHhHHHHHHhcCc-----c---c-----cHHHHHHHhCCChhhc-----CCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067          100 FTVLDNVQWFEVLEGK-----Q---G-----NSLPALELMGLGRLAK-----EKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~-----~---~-----~~~~~l~~~~l~~~~~-----~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      +||+|-+.|.......     +   .     ..+.+++.+||..-.+     ......|||||+||++|-+++.+++++.
T Consensus       204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~  283 (1391)
T KOG0065|consen  204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF  283 (1391)
T ss_pred             eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence            9999999987654321     0   1     1235788999976664     4457899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCh
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLP  198 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~  198 (229)
                      +||+|.|||..+.-.+.+.++.+.. .+.|++++-|.+
T Consensus       284 ~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~  321 (1391)
T KOG0065|consen  284 WDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQP  321 (1391)
T ss_pred             eecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccC
Confidence            9999999999999888888888754 478888888864

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.81  E-value=1.5e-19  Score=156.22  Aligned_cols=67  Identities=28%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             CCCCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          135 KARMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ....+|+||+|++++|++|+         .+|+++|+||||++||+..++.+.+.+..+   + .+++++|+...+.+.+
T Consensus       180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~-q~ii~~~~~~~~~~~~  255 (270)
T cd03242         180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---V-QTFVTTTDLADFDALW  255 (270)
T ss_pred             HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---C-CEEEEeCCchhccchh
Confidence            35568999999999999985         799999999999999999999988888764   2 4666777666665544

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.81  E-value=3.6e-19  Score=168.62  Aligned_cols=86  Identities=33%  Similarity=0.464  Sum_probs=77.6

Q ss_pred             HHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067          119 SLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA  194 (229)
Q Consensus       119 ~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v  194 (229)
                      ..+.|..+||.- .+.++..+|||||.|||-||.-|....   -++||||||+||-..-.+.+.+.|..+..+|.|||++
T Consensus       802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI  881 (935)
T COG0178         802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI  881 (935)
T ss_pred             HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            446677889864 368999999999999999999999887   9999999999999999999999999999999999999


Q ss_pred             eCChhhHHhh
Q 027067          195 THLPIQIEDA  204 (229)
Q Consensus       195 tH~~~~~~~~  204 (229)
                      .|+++.+..+
T Consensus       882 EHNLdVIk~A  891 (935)
T COG0178         882 EHNLDVIKTA  891 (935)
T ss_pred             ecccceEeec
Confidence            9999877664

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.77  E-value=1.3e-18  Score=171.02  Aligned_cols=85  Identities=31%  Similarity=0.359  Sum_probs=77.5

Q ss_pred             HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      +.+..+||..+ +++++.+|||||+|||.||++|+.+|  ++|||||||+|||+...+.+.+++++++++|.|||+|+|+
T Consensus       469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd  548 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD  548 (924)
T ss_pred             HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence            35677888765 69999999999999999999999986  8999999999999999999999999998889999999999


Q ss_pred             hhhHHhhhc
Q 027067          198 PIQIEDAMN  206 (229)
Q Consensus       198 ~~~~~~~~~  206 (229)
                      ++.+. .+|
T Consensus       549 ~~~i~-~aD  556 (924)
T TIGR00630       549 EETIR-AAD  556 (924)
T ss_pred             HHHHh-hCC
Confidence            99886 554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.77  E-value=6.2e-18  Score=141.36  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=90.5

Q ss_pred             eeeeeeeEEEeCC--cEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCC
Q 027067           24 QILRHVNISIHDG--GALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKE   98 (229)
Q Consensus        24 ~iL~~vsl~i~~G--e~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~   98 (229)
                      .+=+|+++  .++  .+++|+||||+|||||||.++.  ++ +..|.+.+.. .           ..+++..+.. .+..
T Consensus        17 ~vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-~-----------~~~~~~d~i~~~l~~   81 (213)
T cd03281          17 FVPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-S-----------ATIGLVDKIFTRMSS   81 (213)
T ss_pred             eEcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-C-----------cEEeeeeeeeeeeCC
Confidence            34445554  444  7999999999999999999983  33 5566654421 0           1223332211 1111


Q ss_pred             CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH-HHHH
Q 027067           99 KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLL  177 (229)
Q Consensus        99 ~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~-~~~l  177 (229)
                      ..++.+++.                              ++ .-+.||+++|++++.+|.++|+|||++|+|+.. ...+
T Consensus        82 ~~si~~~~S------------------------------~f-~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~  130 (213)
T cd03281          82 RESVSSGQS------------------------------AF-MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLL  130 (213)
T ss_pred             ccChhhccc------------------------------hH-HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHH
Confidence            112222111                              11 235699999999999999999999999999975 5566


Q ss_pred             HHHHHHHHhC---CcEEEEEeCChhhHHhhh
Q 027067          178 EYIIAEHRKK---GGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       178 ~~~l~~~~~~---g~tii~vtH~~~~~~~~~  205 (229)
                      ..+++.+.+.   +.++|++||+.+.++.+.
T Consensus       131 ~ail~~l~~~~~~~~~vli~TH~~~l~~~~~  161 (213)
T cd03281         131 IATIEHLLKRGPECPRVIVSTHFHELFNRSL  161 (213)
T ss_pred             HHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence            6788887654   248999999999888765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.77  E-value=1.6e-18  Score=170.54  Aligned_cols=83  Identities=29%  Similarity=0.341  Sum_probs=77.1

Q ss_pred             HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      +.++.+||..+ +++++.+|||||+|||.||+||+.+|  ++|||||||+|||+..++.+.++|++++++|.|||+|+|+
T Consensus       471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~  550 (943)
T PRK00349        471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD  550 (943)
T ss_pred             HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            36778899866 79999999999999999999999997  9999999999999999999999999998889999999999


Q ss_pred             hhhHHh
Q 027067          198 PIQIED  203 (229)
Q Consensus       198 ~~~~~~  203 (229)
                      ++++..
T Consensus       551 ~~~i~~  556 (943)
T PRK00349        551 EDTIRA  556 (943)
T ss_pred             HHHHHh
Confidence            998863

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.76  E-value=3.1e-18  Score=152.81  Aligned_cols=166  Identities=25%  Similarity=0.295  Sum_probs=123.2

Q ss_pred             EeC-CeeeeeeeeEEEeCCc-----EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           19 MRN-AQQILRHVNISIHDGG-----ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        19 ~~~-~~~iL~~vsl~i~~Ge-----~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      +|. .+.-+.+..|.|..|+     ++..+|+||.|||||+++++|.++|++|.      ++..        ..++|-||
T Consensus       344 ~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~--------lnVSykpq  409 (592)
T KOG0063|consen  344 SYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPV--------LNVSYKPQ  409 (592)
T ss_pred             ccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------cccc--------cceecccc
Confidence            353 3567888999998885     78999999999999999999999998751      1111        13444454


Q ss_pred             ccccCCCCCHHHhHHHHH-HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 027067           93 KDAVKEKFTVLDNVQWFE-VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY  171 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~  171 (229)
                      .-.--..-||++-+.--- ..+-...-+.+.++.+.+++..++.+.+|||||+|||++|.+|=..+++++.|||.+-||.
T Consensus       410 kispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDS  489 (592)
T KOG0063|consen  410 KISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDS  489 (592)
T ss_pred             ccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcCh
Confidence            433334446766543110 0111223355678888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-HhCCcEEEEEeCCh
Q 027067          172 DGVRLLEYIIAEH-RKKGGIVIVATHLP  198 (229)
Q Consensus       172 ~~~~~l~~~l~~~-~~~g~tii~vtH~~  198 (229)
                      +.+..-...++.+ -..++|-.+|.||.
T Consensus       490 eQRi~AskvikRfilhakktafvVEhdf  517 (592)
T KOG0063|consen  490 EQRIIASKVIKRFILHAKKTAFVVEHDF  517 (592)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhhhHH
Confidence            9887666666664 34467888999984

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.76  E-value=3.9e-19  Score=145.41  Aligned_cols=126  Identities=18%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             EEEEEcCCCccHHHHHHHHH-CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLA-GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ  116 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  116 (229)
                      +++|+||||+|||||+|.++ ..+-+..|......            ...++++             +.           
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~------------~~~~~~~-------------d~-----------   44 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAE------------SAELPVF-------------DR-----------   44 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeeh------------heEeccc-------------ce-----------
Confidence            36899999999999999997 33333333321100            0011110             00           


Q ss_pred             ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhC-CcEEEEE
Q 027067          117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKK-GGIVIVA  194 (229)
Q Consensus       117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~-l~~~l~~~~~~-g~tii~v  194 (229)
                           ++..++..+..++..+++|+|++|...+++. +.+|+++|+|||++|+|+..... +..+++.+.++ +.++|++
T Consensus        45 -----il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~  118 (185)
T smart00534       45 -----IFTRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFA  118 (185)
T ss_pred             -----EEEEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence                 1122334445567788999988874444432 45999999999999999986654 45677777664 8899999


Q ss_pred             eCChhhHHhhhc
Q 027067          195 THLPIQIEDAMN  206 (229)
Q Consensus       195 tH~~~~~~~~~~  206 (229)
                      ||+.+ +...++
T Consensus       119 TH~~~-l~~~~~  129 (185)
T smart00534      119 THYHE-LTKLAD  129 (185)
T ss_pred             ecHHH-HHHHhh
Confidence            99985 555554

>TIGR01069 mutS2 MutS2 family protein

Probab=99.76  E-value=3.2e-18  Score=166.13  Aligned_cols=152  Identities=16%  Similarity=0.163  Sum_probs=102.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCC-cEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDG-GALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~G-e~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+.++++..-+-...-.-.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|-                     
T Consensus       295 ~i~l~~~rhPll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~---------------------  353 (771)
T TIGR01069       295 KIILENARHPLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI---------------------  353 (771)
T ss_pred             CEEEccccCceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC---------------------
Confidence            466666654221111122478899887 89999999999999999999997 4444441                     


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                       ++|.....  .+.+++.+.  .              .++-.+......+++|+||++++.+++++ .+|.++|+|||++
T Consensus       354 -~Vpa~~~~--~~~~~d~i~--~--------------~i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~  413 (771)
T TIGR01069       354 -PIPANEHS--EIPYFEEIF--A--------------DIGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGA  413 (771)
T ss_pred             -CccCCccc--cccchhhee--e--------------ecChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCC
Confidence             11111100  001111110  0              00111223345788999999999998876 7899999999999


Q ss_pred             CCCHHHHHHH-HHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          168 ALDYDGVRLL-EYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       168 ~LD~~~~~~l-~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |+|+.....+ ..++..+.+.|.++|++||+.+...
T Consensus       414 GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~  449 (771)
T TIGR01069       414 GTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA  449 (771)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence            9999988777 5778888778999999999987644

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.76  E-value=4.3e-18  Score=142.60  Aligned_cols=137  Identities=22%  Similarity=0.232  Sum_probs=87.8

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      ...+.++++++..+ ++++|+||||||||||||+++++.-.  |+   .|..+..      ....++++.   .++..++
T Consensus        17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~vp~------~~~~i~~~~---~i~~~~~   81 (216)
T cd03284          17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFVPA------SKAEIGVVD---RIFTRIG   81 (216)
T ss_pred             CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCeecc------ccceeccee---eEeccCC
Confidence            45689999999987 99999999999999999999875421  11   1211111      112334432   3456666


Q ss_pred             HHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEEeCC---CCCCCHHHHHH
Q 027067          102 VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLLDEP---SVALDYDGVRL  176 (229)
Q Consensus       102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illlDEP---t~~LD~~~~~~  176 (229)
                      +.|++...                             .|.-...+..+++++  +.+|+++|||||   |+++|....  
T Consensus        82 ~~~~ls~g-----------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~--  130 (216)
T cd03284          82 ASDDLAGG-----------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSI--  130 (216)
T ss_pred             chhhhccC-----------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHH--
Confidence            66655321                             133333444455554  569999999999   888887542  


Q ss_pred             HHHHHHHHHhC-CcEEEEEeCChhhHHhhh
Q 027067          177 LEYIIAEHRKK-GGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       177 l~~~l~~~~~~-g~tii~vtH~~~~~~~~~  205 (229)
                      ...+++.+.+. +.++|++||+.+ +.+..
T Consensus       131 ~~~il~~l~~~~~~~vi~~TH~~~-l~~l~  159 (216)
T cd03284         131 AWAIVEYLHEKIGAKTLFATHYHE-LTELE  159 (216)
T ss_pred             HHHHHHHHHhccCCcEEEEeCcHH-HHHHh
Confidence            33445555555 789999999964 33433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.75  E-value=1.8e-17  Score=143.04  Aligned_cols=120  Identities=18%  Similarity=0.151  Sum_probs=83.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ  116 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  116 (229)
                      .-++|+||||||||||+++|+|+++|++|+|.++|+++............+.+++|.. +....+|.+|....       
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k~-------  183 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPKA-------  183 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchHH-------
Confidence            5789999999999999999999999999999999999864321122333455566543 44455555542110       


Q ss_pred             ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067          117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                                              .|     ..+.+.+++|+++|+|||++      .+.+..+++.+. .|.++|++||
T Consensus       184 ------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~~~-~G~~vI~ttH  227 (270)
T TIGR02858       184 ------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEALH-AGVSIIATAH  227 (270)
T ss_pred             ------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHHHh-CCCEEEEEec
Confidence                                    01     13333446999999999974      344555655554 6899999999


Q ss_pred             Chhh
Q 027067          197 LPIQ  200 (229)
Q Consensus       197 ~~~~  200 (229)
                      +.+.
T Consensus       228 ~~~~  231 (270)
T TIGR02858       228 GRDV  231 (270)
T ss_pred             hhHH
Confidence            8533

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.68  E-value=2.7e-16  Score=132.20  Aligned_cols=138  Identities=19%  Similarity=0.175  Sum_probs=90.9

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC-CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG-FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      ...+.+++++.+.+|++++|+||||+||||+++++++ .+.++.|...+.. ..           .+++.   +.++..+
T Consensus        17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~~-----------~~~~~---~~i~~~~   81 (222)
T cd03287          17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-SA-----------TLSIF---DSVLTRM   81 (222)
T ss_pred             CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-ce-----------EEecc---ceEEEEe
Confidence            3578999999999999999999999999999999999 6778888876532 11           11111   1111111


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh--HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHH-H
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG--QRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL-L  177 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~~p~illlDEPt~~LD~~~~~~-l  177 (229)
                      ...|++.                             ..+|.=  |-+++.-+.--+.++.++|+|||++|.|+..... .
T Consensus        82 ~~~d~~~-----------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~  132 (222)
T cd03287          82 GASDSIQ-----------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIA  132 (222)
T ss_pred             cCccccc-----------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHH
Confidence            1111110                             111211  2223333333456899999999999999765443 4


Q ss_pred             HHHHHHHHhC-CcEEEEEeCChhhHHh
Q 027067          178 EYIIAEHRKK-GGIVIVATHLPIQIED  203 (229)
Q Consensus       178 ~~~l~~~~~~-g~tii~vtH~~~~~~~  203 (229)
                      ..+++.+.+. +.++|++||+.+..+-
T Consensus       133 ~~il~~l~~~~~~~~i~~TH~~~l~~~  159 (222)
T cd03287         133 YATLHYLLEEKKCLVLFVTHYPSLGEI  159 (222)
T ss_pred             HHHHHHHHhccCCeEEEEcccHHHHHH
Confidence            6677777665 7899999999877643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.68  E-value=7.6e-17  Score=134.68  Aligned_cols=66  Identities=38%  Similarity=0.475  Sum_probs=51.9

Q ss_pred             CCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          138 MLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       138 ~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .||||||.+++||-.|+    .+.+++|||||.++||...+..+.++|.++.+ +.-+|++||+...++.+
T Consensus       136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~~~~~~a  205 (220)
T PF02463_consen  136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNPEMFEDA  205 (220)
T ss_dssp             GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-HHHHTT-
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            99999999999997764    47799999999999999999999999998754 47899999998776654

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.68  E-value=1.5e-16  Score=142.17  Aligned_cols=169  Identities=27%  Similarity=0.326  Sum_probs=115.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC-CchhhhhhhcceEee-cccccCCCCCHHHhHH-HHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ-SGIFHQYKLQLNWLS-LKDAVKEKFTVLDNVQ-WFE  110 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~tv~e~l~-~~~  110 (229)
                      .+|++.+++|.||.||||-+++++|-++|.-|... ++-+.+. ..+++....+-.|.. ....+-.... .+++. ++.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~k-pQyvd~ipr  175 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIK-PQYVDQIPR  175 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCC-hHHHHHHHH
Confidence            57999999999999999999999999999877541 1111110 011110000000000 0000000000 01111 111


Q ss_pred             H--------hcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH
Q 027067          111 V--------LEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI  180 (229)
Q Consensus       111 ~--------~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~  180 (229)
                      .        +..  ......++++.+.|....++.+.+|||||-||.+||.+.+++.++.++|||.+.||...+..-...
T Consensus       176 ~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~  255 (592)
T KOG0063|consen  176 AVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT  255 (592)
T ss_pred             HHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH
Confidence            0        000  112345678888898899999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHhCCcEEEEEeCChhhHHhh
Q 027067          181 IAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       181 l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++.+...+.-||+|.||++.+.-.
T Consensus       256 IRsl~~p~~YiIVVEHDLsVLDyl  279 (592)
T KOG0063|consen  256 IRSLINPDRYIIVVEHDLSVLDYL  279 (592)
T ss_pred             HHHhhCCCCeEEEEEeechHHHhh
Confidence            999888788999999999877653

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.66  E-value=1.1e-16  Score=133.23  Aligned_cols=50  Identities=22%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             CCCChh--HHHHHHHHHHHhcCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 027067          137 RMLSMG--QRKRLQLARLLAIDRPIWLLDEPS-----VALDYDGVRLLEYIIAEHRK  186 (229)
Q Consensus       137 ~~LSgG--qkqRv~lAral~~~p~illlDEPt-----~~LD~~~~~~l~~~l~~~~~  186 (229)
                      +..||+  |++++.||++++.+|+++++||||     ++||+..++.+.+++++++.
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            444444  999999999999999999999999     99999999999999998753

>PRK00064 recF recombination protein F; Reviewed

Probab=99.66  E-value=2.9e-15  Score=134.48  Aligned_cols=67  Identities=33%  Similarity=0.297  Sum_probs=57.5

Q ss_pred             CCCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          136 ARMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       136 ~~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ...+|.||+|++++|++|+         .+|+|+|+|||+++||+..++.+.+.+..+   +..++++||+.+.+...+
T Consensus       271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~~~~~~  346 (361)
T PRK00064        271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLEDLADLL  346 (361)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhhhhhhh
Confidence            4689999999999999996         799999999999999999999988887653   458999999987766543

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.64  E-value=7.5e-16  Score=150.02  Aligned_cols=138  Identities=20%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             eeeEEEeC-CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce-EeecccccCCCCCHHHh
Q 027067           28 HVNISIHD-GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN-WLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        28 ~vsl~i~~-Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~e~  105 (229)
                      ..|+.+.. +.++.|+|||++||||+||.++...                      +..+.| ++|-...  ..+.++++
T Consensus       318 pndi~l~~~~~~~iITGpN~gGKTt~lktigl~~----------------------~maq~G~~vpa~~~--~~i~~~~~  373 (782)
T PRK00409        318 PKDISLGFDKTVLVITGPNTGGKTVTLKTLGLAA----------------------LMAKSGLPIPANEP--SEIPVFKE  373 (782)
T ss_pred             CceeEECCCceEEEEECCCCCCcHHHHHHHHHHH----------------------HHHHhCCCcccCCC--ccccccce
Confidence            34555543 5689999999999999999995331                      011112 2222110  01122222


Q ss_pred             HHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHH
Q 027067          106 VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLL-EYIIAEH  184 (229)
Q Consensus       106 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~  184 (229)
                      +.                ..+|-.+...+.++++|+||+|++.|++++ .+|.++|+|||++|+|+.....+ ..++..+
T Consensus       374 i~----------------~~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l  436 (782)
T PRK00409        374 IF----------------ADIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYL  436 (782)
T ss_pred             EE----------------EecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence            21                012223344567889999999999999998 89999999999999999977666 4577777


Q ss_pred             HhCCcEEEEEeCChhhHHhhhc
Q 027067          185 RKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       185 ~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+.|.++|++||+.+....+.+
T Consensus       437 ~~~~~~vIitTH~~el~~~~~~  458 (782)
T PRK00409        437 RKRGAKIIATTHYKELKALMYN  458 (782)
T ss_pred             HHCCCEEEEECChHHHHHHHhc
Confidence            7778999999999887776654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.60  E-value=1.3e-15  Score=113.57  Aligned_cols=77  Identities=14%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      ++.+|++++|++++|++++|+||||||||||++++.      +|++.++|.++..... ....+..++.+|+  + ...|
T Consensus         1 ~~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~-~~~~~~~~~~~q~--l-f~~t   70 (107)
T cd00820           1 GTTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRE-DSKDELIGRNPEL--G-LEIR   70 (107)
T ss_pred             CceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhh-hhcCCEEEEechh--c-chhh
Confidence            357899999999999999999999999999999986      7999999999865432 1223334555554  3 3458


Q ss_pred             HHHhHHH
Q 027067          102 VLDNVQW  108 (229)
Q Consensus       102 v~e~l~~  108 (229)
                      ++|||.+
T Consensus        71 i~~Ni~~   77 (107)
T cd00820          71 LRLNIFL   77 (107)
T ss_pred             HHhhcee
Confidence            9999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.58  E-value=2.3e-14  Score=120.21  Aligned_cols=144  Identities=19%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK   99 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
                      ++..+-+|++|+.++|++++|+||||+||||+++++++..-. ..|-      .+...      ...++   ..+.++..
T Consensus        15 ~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa~------~~~i~---~~~~i~~~   79 (218)
T cd03286          15 ASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPAK------SMRLS---LVDRIFTR   79 (218)
T ss_pred             CCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCcc------ccEec---cccEEEEe
Confidence            356789999999999999999999999999999999886322 1121      11110      00111   01111222


Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY  179 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~  179 (229)
                      +...|++..                          .-++++ .|.+++.-....+.+|.++|+|||++|+|+.....+..
T Consensus        80 ~~~~d~~~~--------------------------~~StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~  132 (218)
T cd03286          80 IGARDDIMK--------------------------GESTFM-VELSETANILRHATPDSLVILDELGRGTSTHDGYAIAH  132 (218)
T ss_pred             cCccccccc--------------------------CcchHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHH
Confidence            222222210                          001111 13334433333457899999999999999987655544


Q ss_pred             H-HHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          180 I-IAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       180 ~-l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      . ++.+.+. +.++|++||+.+.+.....
T Consensus       133 ail~~L~~~~~~~~i~~TH~~el~~~~~~  161 (218)
T cd03286         133 AVLEYLVKKVKCLTLFSTHYHSLCDEFHE  161 (218)
T ss_pred             HHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence            4 6666665 8899999999998887653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.56  E-value=5e-14  Score=119.10  Aligned_cols=148  Identities=18%  Similarity=0.176  Sum_probs=89.1

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHH-HHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTF-LRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTL-l~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +.++++.+.+++         .+++|+++.|+|+|||||||| +++++++.++....+++....                
T Consensus         8 ~~~~~ld~~l~g---------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~----------------   62 (230)
T PRK08533          8 LSRDELHKRLGG---------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL----------------   62 (230)
T ss_pred             EEEeeeehhhCC---------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC----------------
Confidence            455666665544         278999999999999999999 699999876554444443211                


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEP  165 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEP  165 (229)
                                 +..+.+.....+..   ...+.... +.-...+-.+ .+|+++.++-.+.+.+-.    +|+++++|||
T Consensus        63 -----------~~~~~~~~~~~~g~---~~~~~~~~-~~l~~~~~~~-~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~  126 (230)
T PRK08533         63 -----------TTTEFIKQMMSLGY---DINKKLIS-GKLLYIPVYP-LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSL  126 (230)
T ss_pred             -----------CHHHHHHHHHHhCC---chHHHhhc-CcEEEEEecc-cccChHHHHHHHHHHHHHHHhcCCCEEEEECc
Confidence                       22222221111100   01111110 1000111122 366666666555554433    6999999999


Q ss_pred             CCCC----CHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          166 SVAL----DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       166 t~~L----D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      |+++    |+...+.+.++++.++++|.|+++ ||+...
T Consensus       127 t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~  164 (230)
T PRK08533        127 SSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKE  164 (230)
T ss_pred             cHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-Eecccc
Confidence            9999    777777888888888777876655 565443

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.54  E-value=1.8e-14  Score=119.23  Aligned_cols=67  Identities=34%  Similarity=0.411  Sum_probs=54.7

Q ss_pred             CCCCCChhHHHHHHHHHHHhcCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          135 KARMLSMGQRKRLQLARLLAIDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAral~~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      +...+|.|++|.+.++.++...+   .++++|||-++|.|..+..+.+++....+.+.-||++||++..+
T Consensus       233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il  302 (303)
T PF13304_consen  233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL  302 (303)
T ss_dssp             GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred             eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence            45677999999999998888877   89999999999999999999999987765578999999998664

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.50  E-value=2.6e-13  Score=109.88  Aligned_cols=68  Identities=26%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             hcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      ..+..+..|.||-=---+.+.+- +.-++|||||-++|.+..+-.+...++.+.+.|..+||+||.+-.
T Consensus       123 ~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL  190 (233)
T COG3910         123 GGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL  190 (233)
T ss_pred             CCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            34567789999987777777765 456999999999999999999999999999999999999998743

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=99.49  E-value=1.5e-13  Score=125.29  Aligned_cols=156  Identities=16%  Similarity=0.112  Sum_probs=114.6

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++-+.++..|. +..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+..              
T Consensus       130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------------  194 (432)
T PRK06793        130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------------  194 (432)
T ss_pred             chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence            467777777774 46788885 99999999999999999999999999999999999887666432              


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHh-------cCCCeE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLA-------IDRPIW  160 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~-------~~p~il  160 (229)
                                 .+|.|.+.......             ++. ...=....+.|.|+|+|++.+.+.+       .++-++
T Consensus       195 -----------~ev~e~~~~~l~~~-------------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLl  250 (432)
T PRK06793        195 -----------REVKDFIRKELGEE-------------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLL  250 (432)
T ss_pred             -----------ccHHHHHHHHhhhc-------------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence                       13334332111000             110 0011346788999999999999988       789999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|+||+..|+.  .++...+.+....|.+..+.||....++.+..
T Consensus       251 ilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~  294 (432)
T PRK06793        251 MMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK  294 (432)
T ss_pred             EecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc
Confidence            999999999996  45555555555457888888997777777654

>TIGR00618 sbcc exonuclease SbcC

Probab=99.49  E-value=8.1e-14  Score=140.16  Aligned_cols=78  Identities=21%  Similarity=0.125  Sum_probs=70.5

Q ss_pred             ChhhcCCCCCCChhHHHHHHHHHHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          129 GRLAKEKARMLSMGQRKRLQLARLLAI----------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       129 ~~~~~~~~~~LSgGqkqRv~lAral~~----------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      ....++++.+|||||++||+||+||+.          +|++||+||||++||+.+...+.+.|..++..|.+|+||||++
T Consensus       941 ~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~ 1020 (1042)
T TIGR00618       941 YTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVP 1020 (1042)
T ss_pred             CCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence            345567899999999999999999986          7999999999999999999999999999987899999999999


Q ss_pred             hhHHhhhc
Q 027067          199 IQIEDAMN  206 (229)
Q Consensus       199 ~~~~~~~~  206 (229)
                      +....+++
T Consensus      1021 ~~~~~~~~ 1028 (1042)
T TIGR00618      1021 EFRERIPH 1028 (1042)
T ss_pred             HHHHhhCC
Confidence            88877654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.48  E-value=2.2e-14  Score=122.48  Aligned_cols=160  Identities=15%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE--EEc--CEeCCCCchhhhhhhcc---eEeecccccCCCCCHH
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI--LWN--GHDITQSGIFHQYKLQL---NWLSLKDAVKEKFTVL  103 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I--~~~--g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~tv~  103 (229)
                      +.+.+||.++|+||+|+|||||++.+++......+++  ++.  +..-  ... ......+   -++.+-..     +..
T Consensus        11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~--~ev-~el~~~I~~~~v~~~~~~-----~~~   82 (249)
T cd01128          11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP--EEV-TDMQRSVKGEVIASTFDE-----PPE   82 (249)
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC--ccH-HHHHHHhccEEEEecCCC-----CHH
Confidence            4788999999999999999999999999887653322  221  1110  111 1111111   11211111     112


Q ss_pred             HhHHH-------HHHh--cCcc-----ccHHHHHHHhCCChhhcCCCCCCChhH--------HHHHHHHHHHhcCCCeEE
Q 027067          104 DNVQW-------FEVL--EGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQ--------RKRLQLARLLAIDRPIWL  161 (229)
Q Consensus       104 e~l~~-------~~~~--~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGq--------kqRv~lAral~~~p~ill  161 (229)
                      ..+..       ....  .+..     ++...+.+  +..+........+|||+        +||+++||++..+++|.+
T Consensus        83 ~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~--a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~  160 (249)
T cd01128          83 RHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLAR--AYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTI  160 (249)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhh--hhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEE
Confidence            21111       0000  0100     01111111  11223334556689999        999999999999999999


Q ss_pred             EeCCCCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          162 LDEPSVALDYDGV-RLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       162 lDEPt~~LD~~~~-~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |  ||+.+|..+. ..+.  +.+++..+.|.|+.||++.....+
T Consensus       161 l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~  200 (249)
T cd01128         161 I--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIF  200 (249)
T ss_pred             e--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCC
Confidence            9  9999996433 2132  566665678999999998776653

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.47  E-value=2.9e-13  Score=109.74  Aligned_cols=77  Identities=9%  Similarity=0.013  Sum_probs=63.4

Q ss_pred             HHhCCChhhcCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEE
Q 027067          124 ELMGLGRLAKEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALD---YDGVRLLEYIIAEHRKKGGIVIVA  194 (229)
Q Consensus       124 ~~~~l~~~~~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD---~~~~~~l~~~l~~~~~~g~tii~v  194 (229)
                      ...+.....+..+..+|+|++|      +...+.+...+|+++++|||++.+|   ...+..+.+++..+++.|.|+|++
T Consensus        57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v  136 (187)
T cd01124          57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLT  136 (187)
T ss_pred             HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            3445545667888999999998      5555666778999999999999999   777788888888888889999999


Q ss_pred             eCChhh
Q 027067          195 THLPIQ  200 (229)
Q Consensus       195 tH~~~~  200 (229)
                      +|+...
T Consensus       137 ~~~~~~  142 (187)
T cd01124         137 SEQSGL  142 (187)
T ss_pred             eccccC
Confidence            998664

A related protein is found in archaea.

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.45  E-value=1.4e-13  Score=129.74  Aligned_cols=66  Identities=30%  Similarity=0.365  Sum_probs=59.1

Q ss_pred             CCCCCCChhHHHHHHHHHHHh----------cCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          134 EKARMLSMGQRKRLQLARLLA----------IDRPIWLLDEPS-VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       134 ~~~~~LSgGqkqRv~lAral~----------~~p~illlDEPt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ..+.+|||||+||++||+||+          .+|+++|||||| ++||+.++..+.+++..+  .|.|||++||++...
T Consensus       464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~~~  540 (562)
T PHA02562        464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDHDP  540 (562)
T ss_pred             cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchhch
Confidence            356899999999999999988          599999999998 789999999999999987  578999999996544

>TIGR00606 rad50 rad50

Probab=99.44  E-value=3e-13  Score=138.73  Aligned_cols=79  Identities=27%  Similarity=0.280  Sum_probs=68.1

Q ss_pred             CCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCCcEEEEEeCChhhHHh
Q 027067          135 KARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-----KKGGIVIVATHLPIQIED  203 (229)
Q Consensus       135 ~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-----~~g~tii~vtH~~~~~~~  203 (229)
                      .++.|||||||      |++||+|++.+|++|+|||||++||+.+...+...+..+.     ..|.+||+||||+.++..
T Consensus      1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606      1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred             CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence            45789999999      9999999999999999999999999999988888777752     237899999999999999


Q ss_pred             hhccCCCCCC
Q 027067          204 AMNLRLPPRF  213 (229)
Q Consensus       204 ~~~~~~~~~~  213 (229)
                      ++....+..|
T Consensus      1276 ~~~~~~~~~~ 1285 (1311)
T TIGR00606      1276 LGRSEYVEKF 1285 (1311)
T ss_pred             Hhhcccccee
Confidence            8865554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00634 recN DNA repair protein RecN

Probab=99.43  E-value=3.2e-13  Score=127.84  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=61.5

Q ss_pred             CCCChhHHHHHHHHHHHhcC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          137 RMLSMGQRKRLQLARLLAID----RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       137 ~~LSgGqkqRv~lAral~~~----p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ..|||||+||++||++++..    |++|||||||+|||+.....+.+.+..+.+ +.+||+|||++..+. .+|.
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~~~~-~ad~  511 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQVAA-HADA  511 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHHHHH-hcCe
Confidence            47899999999999999985    699999999999999999999999999864 899999999998775 4543

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=99.42  E-value=4.4e-13  Score=134.73  Aligned_cols=72  Identities=25%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             hcCCCCCCChhHHHHHHHHHHHhc--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          132 AKEKARMLSMGQRKRLQLARLLAI--------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~~--------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ..+++.+|||||+++++||+||+.        +|++||+||||++||+.+...+.+.|..+++.|+||+||||.....+.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~ 1022 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKER 1022 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHh
Confidence            357899999999999999999996        899999999999999999999999999998889999999996554433

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.42  E-value=6.8e-13  Score=104.02  Aligned_cols=132  Identities=15%  Similarity=0.070  Sum_probs=84.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG  117 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  117 (229)
                      +++|.|+||+||||+++.+++...+..|.|.+.+.+.....    .                   .++.......     
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~----~-------------------~~~~~~~~~~-----   52 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE----L-------------------TERLIGESLK-----   52 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH----H-------------------HHHHhhhhhc-----
Confidence            47899999999999999999988776677766443321110    0                   0000000000     


Q ss_pred             cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHHhC
Q 027067          118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA----------LDYDGVRLLEYIIAEHRKK  187 (229)
Q Consensus       118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~~  187 (229)
                            ...+...+........+.++.+++..+++...+|+++++|||++-          .|....+.+.++....++.
T Consensus        53 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  126 (165)
T cd01120          53 ------GALDNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKG  126 (165)
T ss_pred             ------cccccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Confidence                  000001112222334455566688899999999999999999954          4555567777877777777


Q ss_pred             CcEEEEEeCChhhHHh
Q 027067          188 GGIVIVATHLPIQIED  203 (229)
Q Consensus       188 g~tii~vtH~~~~~~~  203 (229)
                      +.|+|+++|.....+.
T Consensus       127 ~~~vv~~~~~~~~~~~  142 (165)
T cd01120         127 GVTVIFTLQVPSGDKG  142 (165)
T ss_pred             CceEEEEEecCCcccc
Confidence            9999999998765433

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK10869 recombination and repair protein; Provisional

Probab=99.40  E-value=6.7e-13  Score=125.22  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=60.9

Q ss_pred             CCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067          138 MLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR  208 (229)
Q Consensus       138 ~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~  208 (229)
                      .|||||+|||+||++++.    +|+++|||||++|||..+...+.+.+..+.+ +.+||+|||++..+ ..+|.+
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~~~-~~ad~~  502 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQVA-GCGHQH  502 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEE
Confidence            479999999999999997    5899999999999999999999999999864 68999999999765 455433

>PRK03918 chromosome segregation protein; Provisional

Probab=99.38  E-value=1.1e-12  Score=129.86  Aligned_cols=73  Identities=34%  Similarity=0.388  Sum_probs=63.0

Q ss_pred             cCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          133 KEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       133 ~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++++..|||||+|      |++||++++.+|+++||||||++||+..+..+.+++..+...+.+||+|||+++. ..++|
T Consensus       783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d  861 (880)
T PRK03918        783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD  861 (880)
T ss_pred             cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence            5678999999999      5566678889999999999999999999999999998876667899999999864 45555

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.37  E-value=2e-12  Score=118.52  Aligned_cols=155  Identities=14%  Similarity=0.169  Sum_probs=93.2

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-------hhhhhhcceEeeccc
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-------FHQYKLQLNWLSLKD   94 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-------~~~~~~~~~~~~~~~   94 (229)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.....       ....++.+.++.+.+
T Consensus       145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            46789999 9999999999999999999999999999999999999996654322110       011234556664322


Q ss_pred             ccCCCCCHHHhHHH-HHHhcCccccHHHHHHHhCCChhhcCCCCCCCh-hHHHH-HHHHHHHhcCCCeEEEeCC--CCCC
Q 027067           95 AVKEKFTVLDNVQW-FEVLEGKQGNSLPALELMGLGRLAKEKARMLSM-GQRKR-LQLARLLAIDRPIWLLDEP--SVAL  169 (229)
Q Consensus        95 ~~~~~~tv~e~l~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSg-GqkqR-v~lAral~~~p~illlDEP--t~~L  169 (229)
                      .     +..+.+.- +..     -...|.+...|..-+.  -..+|+- -|.+| ++           +.+.||  |+|+
T Consensus       224 ~-----~~~~r~~~~~~a-----~~iAEyfr~~g~~Vll--~~Dsltr~A~A~rEis-----------l~~ge~P~~~G~  280 (438)
T PRK07721        224 Q-----PALMRIKGAYTA-----TAIAEYFRDQGLNVML--MMDSVTRVAMAQREIG-----------LAVGEPPTTKGY  280 (438)
T ss_pred             C-----CHHHHHHHHHHH-----HHHHHHHHHCCCcEEE--EEeChHHHHHHHHHHH-----------HhcCCCCccccC
Confidence            1     22221110 000     0111222222221000  0011110 01111 11           123454  7899


Q ss_pred             CHHHHHHHHHHHHHHHh--CCc-----EEEEEeCChhh
Q 027067          170 DYDGVRLLEYIIAEHRK--KGG-----IVIVATHLPIQ  200 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~--~g~-----tii~vtH~~~~  200 (229)
                      |+.....+.++++.+..  .|.     ||++.+||+++
T Consensus       281 dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e  318 (438)
T PRK07721        281 TPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE  318 (438)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc
Confidence            99999999999998863  575     99999999874

>PRK13695 putative NTPase; Provisional

Probab=99.37  E-value=7.9e-13  Score=106.79  Aligned_cols=62  Identities=15%  Similarity=-0.007  Sum_probs=47.9

Q ss_pred             cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       133 ~~~~~~LSgGqkqRv~lAral~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      .++...+|++++-++.+++..+.+|+++++||  |+.++|....    +.+..+.+.+.++|+++|+.
T Consensus        73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~----~~l~~~~~~~~~~i~v~h~~  136 (174)
T PRK13695         73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFV----KAVEEVLDSEKPVIATLHRR  136 (174)
T ss_pred             eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHH----HHHHHHHhCCCeEEEEECch
Confidence            44566799999999999999999999999999  5445554433    44444445688999999984

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=99.35  E-value=5.6e-13  Score=121.96  Aligned_cols=52  Identities=29%  Similarity=0.401  Sum_probs=48.4

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCC
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQS   77 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~   77 (229)
                      ++|++||+++++||+++|+|||||||||||+  +|+.+|++| +|.++|.++...
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~   72 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSP   72 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCC
Confidence            5899999999999999999999999999999  788888888 799999998764

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.30  E-value=1.3e-11  Score=108.59  Aligned_cols=117  Identities=17%  Similarity=0.119  Sum_probs=75.0

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHH
Q 027067           29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW  108 (229)
Q Consensus        29 vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~  108 (229)
                      +++.+..|+.++|+||+|||||||+++|++++++..|.+.+.+  .......  ....+.+..+.               
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~--~~~~~~l~~~~---------------  197 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLP--HPNYVHLFYSK---------------  197 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCC--CCCEEEEEecC---------------
Confidence            4567889999999999999999999999999999999888742  2111100  00000000000               


Q ss_pred             HHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 027067          109 FEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG  188 (229)
Q Consensus       109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g  188 (229)
                             .                .......|    ..-.++.+|-++|+++++|||.+       .....+++... .|
T Consensus       198 -------~----------------~~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~-~g  242 (308)
T TIGR02788       198 -------G----------------GQGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------DEAFDFIRAVN-TG  242 (308)
T ss_pred             -------C----------------CCCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHh-cC
Confidence                   0                00001111    22246667889999999999996       23455666665 45


Q ss_pred             c-EEEEEeCChh
Q 027067          189 G-IVIVATHLPI  199 (229)
Q Consensus       189 ~-tii~vtH~~~  199 (229)
                      . +++.++|..+
T Consensus       243 ~~~~i~T~Ha~~  254 (308)
T TIGR02788       243 HPGSITTLHAGS  254 (308)
T ss_pred             CCeEEEEEeCCC
Confidence            4 5799999876

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.30  E-value=4.6e-12  Score=127.84  Aligned_cols=73  Identities=29%  Similarity=0.353  Sum_probs=63.9

Q ss_pred             hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+.++..|||||+||++||++++    .+|+++||||||++||+..+..+..++..+.+ +.+||+|||++..+. .+|
T Consensus      1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~~~-~~d 1159 (1179)
T TIGR02168      1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGTME-VAD 1159 (1179)
T ss_pred             ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhHHH-Hhh
Confidence            45788999999999999999985    67799999999999999999999999988854 478999999988764 454

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK01156 chromosome segregation protein; Provisional

Probab=99.28  E-value=9.8e-12  Score=123.44  Aligned_cols=72  Identities=26%  Similarity=0.372  Sum_probs=60.9

Q ss_pred             CCCCCCChhHHHHHHH------HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH-HhCC--cEEEEEeCChhhHHhh
Q 027067          134 EKARMLSMGQRKRLQL------ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH-RKKG--GIVIVATHLPIQIEDA  204 (229)
Q Consensus       134 ~~~~~LSgGqkqRv~l------Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~-~~~g--~tii~vtH~~~~~~~~  204 (229)
                      ..+..|||||++|++|      |++++.+|++++|||||++||+..+..+.+++... +..+  .+||++||+...+ .+
T Consensus       797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~  875 (895)
T PRK01156        797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV  875 (895)
T ss_pred             CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence            4688999999999975      59999999999999999999999999999988764 3333  4899999999866 45


Q ss_pred             hc
Q 027067          205 MN  206 (229)
Q Consensus       205 ~~  206 (229)
                      +|
T Consensus       876 ~d  877 (895)
T PRK01156        876 AD  877 (895)
T ss_pred             cC
Confidence            54

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.25  E-value=4.8e-10  Score=84.51  Aligned_cols=118  Identities=29%  Similarity=0.311  Sum_probs=80.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE  113 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~  113 (229)
                      ++..+.|+||+|+||||+++.++....... +-++++.........                       .+..       
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~-------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL-----------------------DQLL-------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH-----------------------HHHH-------
Confidence            367899999999999999999999987654 445554433221100                       0000       


Q ss_pred             CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH------HHHHHHhC
Q 027067          114 GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEY------IIAEHRKK  187 (229)
Q Consensus       114 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~------~l~~~~~~  187 (229)
                                     ...........++++..+..+++|-..+|.++++||+..-.+.........      ........
T Consensus        51 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (148)
T smart00382       51 ---------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEK  115 (148)
T ss_pred             ---------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcC
Confidence                           112233445777888888888888888899999999999999887654442      22333345


Q ss_pred             CcEEEEEeCC
Q 027067          188 GGIVIVATHL  197 (229)
Q Consensus       188 g~tii~vtH~  197 (229)
                      +..+|+++|.
T Consensus       116 ~~~~i~~~~~  125 (148)
T smart00382      116 NLTVILTTND  125 (148)
T ss_pred             CCEEEEEeCC
Confidence            6788888885

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=99.24  E-value=1e-10  Score=115.13  Aligned_cols=49  Identities=20%  Similarity=0.086  Sum_probs=45.7

Q ss_pred             hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          154 AIDRPIWLLDEPSVAL-DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       154 ~~~p~illlDEPt~~L-D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      ..+|.++++|||+.+| |+...+.+.+.++..++.|.+++++||+++++.
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~  699 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAE  699 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh
Confidence            5799999999999999 688999999999999888999999999999886

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.18  E-value=1.3e-10  Score=98.08  Aligned_cols=141  Identities=17%  Similarity=0.197  Sum_probs=81.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHH-CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLA-GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE  110 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~  110 (229)
                      -+++|.++.|.|++|||||||...++ +..+ ..+.+.|-..+  . .. .+...+..      .  ..+.+.+.+..  
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e--~-~~-~~~~~~~~------~--~g~~~~~~~~~--   85 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTE--N-TS-KSYLKQME------S--VKIDISDFFLW--   85 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcC--C-CH-HHHHHHHH------H--CCCChhHHHhC--
Confidence            47899999999999999999998774 3222 23344332211  0 00 01111000      0  00111111100  


Q ss_pred             HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc--CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHH
Q 027067          111 VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI--DRPIWLLDEPSVALD---YDGVRLLEYIIAEHR  185 (229)
Q Consensus       111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~illlDEPt~~LD---~~~~~~l~~~l~~~~  185 (229)
                         +          .+.+.+..-......|.++++.+..++.++.  +|+++++||||+.+|   ......+...+..++
T Consensus        86 ---g----------~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~  152 (234)
T PRK06067         86 ---G----------YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLV  152 (234)
T ss_pred             ---C----------CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHH
Confidence               0          0001011111234557788999999999987  999999999996544   444444444566667


Q ss_pred             hCCcEEEEEeCChhh
Q 027067          186 KKGGIVIVATHLPIQ  200 (229)
Q Consensus       186 ~~g~tii~vtH~~~~  200 (229)
                      ++|.|+++++|+...
T Consensus       153 ~~g~tvllt~~~~~~  167 (234)
T PRK06067        153 DLGKTILITLHPYAF  167 (234)
T ss_pred             hCCCEEEEEecCCcC
Confidence            778999999997654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.17  E-value=1.4e-10  Score=107.31  Aligned_cols=145  Identities=19%  Similarity=0.206  Sum_probs=92.5

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD  104 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e  104 (229)
                      ++++.++.+.+|++++++||||+||||++..|++.+....|..                  .++++..+.   ...++.|
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~------------------kV~LI~~Dt---~RigA~E  303 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS------------------KVALLTTDS---YRIGGHE  303 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC------------------eEEEEeCCc---cchhHHH
Confidence            4567777888999999999999999999999999876666532                  123333332   2357888


Q ss_pred             hHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHH-HHHHHHHHhcCC-----CeEEEeCCCCCCCHHH
Q 027067          105 NVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRK-RLQLARLLAIDR-----PIWLLDEPSVALDYDG  173 (229)
Q Consensus       105 ~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq-Rv~lAral~~~p-----~illlDEPt~~LD~~~  173 (229)
                      ++.++....+.     ...........++.+.....+.+.+.+++- .+.-..+++.++     .+|+||.++.+     
T Consensus       304 QLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~-----  378 (484)
T PRK06995        304 QLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG-----  378 (484)
T ss_pred             HHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-----
Confidence            88876654321     123334455666665545566665444432 223334444444     68999999886     


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEeC
Q 027067          174 VRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       174 ~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                       ..+.+.++.++..+.+-++.|+
T Consensus       379 -~~l~~i~~~f~~~~~~g~IlTK  400 (484)
T PRK06995        379 -DTLNEVVQAYRGPGLAGCILTK  400 (484)
T ss_pred             -HHHHHHHHHhccCCCCEEEEeC
Confidence             4455556666555666556677

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.16  E-value=5.3e-11  Score=120.43  Aligned_cols=72  Identities=22%  Similarity=0.279  Sum_probs=62.5

Q ss_pred             cCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          133 KEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       133 ~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+++..||||||++++||++|+.    +|+++|||||+++||+..+..+..+|..+.. +.++|++||+...+ ..+|
T Consensus      1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~~~-~~~d 1144 (1164)
T TIGR02169      1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSPMI-EYAD 1144 (1164)
T ss_pred             CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHHHH-Hhcc
Confidence            45678999999999999999985    7899999999999999999999999988754 57899999998655 4444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=99.14  E-value=7.4e-10  Score=91.53  Aligned_cols=109  Identities=21%  Similarity=0.296  Sum_probs=66.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ  116 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  116 (229)
                      ++.|+||+||||||+++.+++.+.+ ..|.|...+.++...     ......++.|..                      
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-----~~~~~~~i~q~~----------------------   55 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-----HESKRSLINQRE----------------------   55 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-----ccCccceeeecc----------------------
Confidence            7899999999999999999888764 356766544433110     000001111100                      


Q ss_pred             ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067          117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                               ++.      ....++      =+++++|..+|+++++|||.   |.+.   +...++ ....|..++.++|
T Consensus        56 ---------vg~------~~~~~~------~~i~~aLr~~pd~ii~gEir---d~e~---~~~~l~-~a~~G~~v~~t~H  107 (198)
T cd01131          56 ---------VGL------DTLSFE------NALKAALRQDPDVILVGEMR---DLET---IRLALT-AAETGHLVMSTLH  107 (198)
T ss_pred             ---------cCC------CccCHH------HHHHHHhcCCcCEEEEcCCC---CHHH---HHHHHH-HHHcCCEEEEEec
Confidence                     000      001111      14889999999999999996   5543   333333 3456899999999


Q ss_pred             ChhhH
Q 027067          197 LPIQI  201 (229)
Q Consensus       197 ~~~~~  201 (229)
                      ..+..
T Consensus       108 a~~~~  112 (198)
T cd01131         108 TNSAA  112 (198)
T ss_pred             CCcHH
Confidence            87654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK02224 chromosome segregation protein; Provisional

Probab=99.12  E-value=1.3e-10  Score=115.29  Aligned_cols=71  Identities=34%  Similarity=0.439  Sum_probs=61.0

Q ss_pred             CCCCCChhHHH------HHHHHHHHhcC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCChhhH
Q 027067          135 KARMLSMGQRK------RLQLARLLAID-----R-PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG-IVIVATHLPIQI  201 (229)
Q Consensus       135 ~~~~LSgGqkq------Rv~lAral~~~-----p-~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~-tii~vtH~~~~~  201 (229)
                      .+..||||||+      |+++|++++.+     | +++|+||||++||+..+..+..+|..+...|. +||+|||++..+
T Consensus       778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~  857 (880)
T PRK02224        778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV  857 (880)
T ss_pred             ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence            46799999999      99999999864     2 67999999999999999999999999876664 799999999887


Q ss_pred             Hhhhc
Q 027067          202 EDAMN  206 (229)
Q Consensus       202 ~~~~~  206 (229)
                      . .+|
T Consensus       858 ~-~ad  861 (880)
T PRK02224        858 G-AAD  861 (880)
T ss_pred             H-hcC
Confidence            5 344

>TIGR00611 recf recF protein

Probab=99.10  E-value=1.3e-10  Score=104.56  Aligned_cols=64  Identities=33%  Similarity=0.373  Sum_probs=57.4

Q ss_pred             CCCChhHHHHHHHHHHHhc---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          137 RMLSMGQRKRLQLARLLAI---------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       137 ~~LSgGqkqRv~lAral~~---------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ..+|.||+|++.||.+|+.         +|+|||||||+++||+..++.+.+.+...   |.+|+++||+++.+..
T Consensus       274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~~~~~  346 (365)
T TIGR00611       274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLDHLKE  346 (365)
T ss_pred             HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChhhccc
Confidence            4799999999999999999         99999999999999999999988888643   6799999999876554

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.08  E-value=8.9e-12  Score=116.04  Aligned_cols=149  Identities=12%  Similarity=0.096  Sum_probs=93.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHH--HCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRML--AGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF  109 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i--~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  109 (229)
                      -+.+|.++.|.|++|||||||..-.  .|..+..+.-+++....-.  ....+....++|-.+...-      .+++.+.
T Consensus        17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~--~~l~~~~~~~G~~~~~~~~------~g~l~~~   88 (484)
T TIGR02655        17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP--QDIIKNARSFGWDLQKLVD------EGKLFIL   88 (484)
T ss_pred             CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH--HHHHHHHHHcCCCHHHHhh------cCceEEE
Confidence            4779999999999999999999765  5666555556666543211  1111222333432211000      0000000


Q ss_pred             HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 027067          110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA--RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK  187 (229)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA--ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~  187 (229)
                      ..  ........+++.+++.+..++.+..+|+|++|||.|+  .++...|+..          ...++.+.++++.+++.
T Consensus        89 ~~--~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~  156 (484)
T TIGR02655        89 DA--SPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQI  156 (484)
T ss_pred             ec--CchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHC
Confidence            00  0000111234456667778888999999999999999  5665555444          45677888899888888


Q ss_pred             CcEEEEEeCChhh
Q 027067          188 GGIVIVATHLPIQ  200 (229)
Q Consensus       188 g~tii~vtH~~~~  200 (229)
                      |.|+|++||+.+.
T Consensus       157 g~TvLLtsh~~~~  169 (484)
T TIGR02655       157 GVTTVMTTERIEE  169 (484)
T ss_pred             CCEEEEEecCccc
Confidence            9999999998754

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.07  E-value=8.1e-10  Score=105.80  Aligned_cols=83  Identities=33%  Similarity=0.393  Sum_probs=72.5

Q ss_pred             HHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          122 ALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       122 ~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      .|..+||.-+ ++|...+|||||.||+-||.-+=.+  -=+++||||+.||-+.--+.+.+.|+.++..|.|+|+|.||.
T Consensus       464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe  543 (935)
T COG0178         464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE  543 (935)
T ss_pred             HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence            3556788644 6899999999999999999998765  357899999999999999999999999999999999999998


Q ss_pred             hhHHhh
Q 027067          199 IQIEDA  204 (229)
Q Consensus       199 ~~~~~~  204 (229)
                      +.+..|
T Consensus       544 dti~~A  549 (935)
T COG0178         544 DTIRAA  549 (935)
T ss_pred             HHHhhc
Confidence            887665

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=99.05  E-value=7.3e-10  Score=101.50  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC---EeCCCCch--hh-
Q 027067            9 PRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGI--FH-   81 (229)
Q Consensus         9 ~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g---~~~~~~~~--~~-   81 (229)
                      +.++.+++++.| .+..+++.++ .|.+||+++|+|+||||||||+++|+++.+|+.|.|.+.|   +++.....  .. 
T Consensus       138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~  216 (450)
T PRK06002        138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD  216 (450)
T ss_pred             CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence            469999999998 4678999996 9999999999999999999999999999999999998864   44432111  11 


Q ss_pred             hhhhcceEeecccc
Q 027067           82 QYKLQLNWLSLKDA   95 (229)
Q Consensus        82 ~~~~~~~~~~~~~~   95 (229)
                      ..++.+++++|.+.
T Consensus       217 ~r~rtI~vV~qsd~  230 (450)
T PRK06002        217 NLKKAVAVVATSDE  230 (450)
T ss_pred             hhCCeEEEEEcCCC
Confidence            12346788887543

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=99.04  E-value=2.6e-10  Score=93.17  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=55.6

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecc--cccCCCCCHHH
Q 027067           27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK--DAVKEKFTVLD  104 (229)
Q Consensus        27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~tv~e  104 (229)
                      +=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-....    ....+.+..+.  .......+..+
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   91 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP----HPNWVRLVTRPGNVEGSGEVTMAD   91 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC----CCCEEEEEEecCCCCCCCccCHHH
Confidence            3345678899999999999999999999999999999999999764321111    11223333332  23345567777


Q ss_pred             hHHHHH
Q 027067          105 NVQWFE  110 (229)
Q Consensus       105 ~l~~~~  110 (229)
                      .+....
T Consensus        92 ~l~~~l   97 (186)
T cd01130          92 LLRSAL   97 (186)
T ss_pred             HHHHHh
Confidence            776543

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=99.03  E-value=8.6e-09  Score=101.99  Aligned_cols=55  Identities=20%  Similarity=0.167  Sum_probs=50.5

Q ss_pred             HHHHHhcCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          149 LARLLAIDRPIWLLDEPSVAL-DYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       149 lAral~~~p~illlDEPt~~L-D~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +++++..+|.++++|||+.+| |+..++.+.+.++.+++.|.+++++||+++++..
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~  735 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN  735 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence            677888999999999999999 6888999999999998889999999999998875

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.02  E-value=1.5e-09  Score=91.94  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=37.1

Q ss_pred             HHhcCCCeEEEeCCCCC------CCHHHHHHHHHHHHHHHh-CCcEEEEEeCChh
Q 027067          152 LLAIDRPIWLLDEPSVA------LDYDGVRLLEYIIAEHRK-KGGIVIVATHLPI  199 (229)
Q Consensus       152 al~~~p~illlDEPt~~------LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~  199 (229)
                      +...+|+++++| |+++      +|+.....+.+.+..+.+ .|.+||+++|...
T Consensus       107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence            346799999999 8764      688877777777777654 5899999999754

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=99.01  E-value=5.4e-10  Score=102.13  Aligned_cols=90  Identities=12%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---EEcCEeCCCCch--hh---hhhhcceEeecc
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---LWNGHDITQSGI--FH---QYKLQLNWLSLK   93 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---~~~g~~~~~~~~--~~---~~~~~~~~~~~~   93 (229)
                      +..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+   -.++.++.....  ..   ..+..+++.+++
T Consensus       142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d  220 (434)
T PRK07196        142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD  220 (434)
T ss_pred             ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence            56799999 9999999999999999999999999999999886433   233333321100  00   123357888888


Q ss_pred             cccCCCCCHHHhHHHHHHh
Q 027067           94 DAVKEKFTVLDNVQWFEVL  112 (229)
Q Consensus        94 ~~~~~~~tv~e~l~~~~~~  112 (229)
                      ...+..+++.++....+.+
T Consensus       221 ~s~~~rl~a~e~a~~iAEy  239 (434)
T PRK07196        221 ESPLMRIKATELCHAIATY  239 (434)
T ss_pred             CChhhhHHHHHHHHHHHHH
Confidence            8888888998887665543

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.01  E-value=2.6e-09  Score=105.58  Aligned_cols=134  Identities=22%  Similarity=0.296  Sum_probs=83.5

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      ..+=+|+++. ..+.++.|+|||.+||||+||.++-.. -..-|.                      |+|-...   .+.
T Consensus       595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~----------------------~VPa~~a---~i~  648 (854)
T PRK05399        595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS----------------------FVPAESA---RIG  648 (854)
T ss_pred             ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC----------------------ceeccce---Eec
Confidence            3456677777 667899999999999999999986431 112221                      1111110   011


Q ss_pred             HHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc--CCCeEEEeCC---CCCCCHHHHHH
Q 027067          102 VLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI--DRPIWLLDEP---SVALDYDGVRL  176 (229)
Q Consensus       102 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~--~p~illlDEP---t~~LD~~~~~~  176 (229)
                      +.+.+                +.++|-   .+.-...+|.-+.....++.+|-.  ++.++|+|||   |+.+|..  ..
T Consensus       649 ~~d~I----------------~triga---~d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~--ai  707 (854)
T PRK05399        649 IVDRI----------------FTRIGA---SDDLASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGL--SI  707 (854)
T ss_pred             ccCee----------------eeccCc---ccccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhH--HH
Confidence            11211                001111   122335677777778888887765  8999999999   8888843  34


Q ss_pred             HHHHHHHHHhC-CcEEEEEeCChhhHHhh
Q 027067          177 LEYIIAEHRKK-GGIVIVATHLPIQIEDA  204 (229)
Q Consensus       177 l~~~l~~~~~~-g~tii~vtH~~~~~~~~  204 (229)
                      ...+++.+.+. +.++|++||+.+ +...
T Consensus       708 a~aile~l~~~~~~~~l~aTH~~e-l~~l  735 (854)
T PRK05399        708 AWAVAEYLHDKIGAKTLFATHYHE-LTEL  735 (854)
T ss_pred             HHHHHHHHHhcCCceEEEEechHH-HHHH
Confidence            55566666655 588999999944 4443

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.00  E-value=2.6e-10  Score=93.80  Aligned_cols=113  Identities=12%  Similarity=0.098  Sum_probs=68.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh-hhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH-QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ  116 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  116 (229)
                      ++||+||||||||||.++|++++  ..|.+.+.+.+--...... ...........    ++. + .           ..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~----~~~-~-~-----------~~   61 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLSHEELEERKNNNYD----HPD-A-F-----------DF   61 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccccccHHHhccCCCC----CCC-c-c-----------cH
Confidence            58999999999999999999998  3455555444321100000 00000000000    000 0 0           01


Q ss_pred             ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067          117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus       117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      ....+.+..+...+..+.+..+.|.|++++..+   .+..++++|+|+|+.+.++.
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~  114 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE  114 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence            122345555555556677888999999876655   56789999999999999863

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=99.00  E-value=9.2e-09  Score=101.30  Aligned_cols=52  Identities=21%  Similarity=0.083  Sum_probs=46.4

Q ss_pred             HHhcCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          152 LLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       152 al~~~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .+..+|.++++|||...|| +...+.+.+.++..++.|..++++||+++++..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~  690 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK  690 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence            3456899999999999999 778889999999999889999999999988765

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.96  E-value=1.8e-09  Score=107.53  Aligned_cols=68  Identities=29%  Similarity=0.301  Sum_probs=60.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHh------cC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          134 EKARMLSMGQRKRLQLARLLA------ID--RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       134 ~~~~~LSgGqkqRv~lAral~------~~--p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      +.+.+|||||+-.++||-+|+      .+  -++++|||||..||+...+.+..++..+...+.+|++|||+.+..
T Consensus       811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~  886 (908)
T COG0419         811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELK  886 (908)
T ss_pred             cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence            678999999999888887765      35  699999999999999999999999999988889999999997655

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.94  E-value=1.7e-09  Score=111.26  Aligned_cols=65  Identities=15%  Similarity=0.057  Sum_probs=55.9

Q ss_pred             hhcCCCCCCChhHHHHHH----HHHH--------HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          131 LAKEKARMLSMGQRKRLQ----LARL--------LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       131 ~~~~~~~~LSgGqkqRv~----lAra--------l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      ..++.++.||||||||++    +|++        +..+|++++|||||+++|+.++..+.+++..+   +.++||+||.+
T Consensus      1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680      1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred             chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence            345567999999999996    5755        55899999999999999999999999998877   78899999963

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.88  E-value=2.7e-08  Score=88.94  Aligned_cols=113  Identities=26%  Similarity=0.326  Sum_probs=69.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL  112 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  112 (229)
                      .++..+.|.||+||||||+++++.+.+. +..|.|..-+.++...     .......+.|.                   
T Consensus       120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-----~~~~~~~i~q~-------------------  175 (343)
T TIGR01420       120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-----HRNKRSLINQR-------------------  175 (343)
T ss_pred             hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-----ccCccceEEcc-------------------
Confidence            4688999999999999999999998765 4467766544332110     00000000000                   


Q ss_pred             cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEE
Q 027067          113 EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI  192 (229)
Q Consensus       113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii  192 (229)
                                  ..+..        ..+    -.-+++++|-++|+++++||+.   |.++....   ++ ....|.+|+
T Consensus       176 ------------evg~~--------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~---l~-aa~tGh~v~  224 (343)
T TIGR01420       176 ------------EVGLD--------TLS----FANALRAALREDPDVILIGEMR---DLETVELA---LT-AAETGHLVF  224 (343)
T ss_pred             ------------ccCCC--------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHH---HH-HHHcCCcEE
Confidence                        00100        001    1224677888999999999997   77765432   22 345689999


Q ss_pred             EEeCChhhH
Q 027067          193 VATHLPIQI  201 (229)
Q Consensus       193 ~vtH~~~~~  201 (229)
                      .+.|-.+..
T Consensus       225 ~T~Ha~~~~  233 (343)
T TIGR01420       225 GTLHTNSAA  233 (343)
T ss_pred             EEEcCCCHH
Confidence            999975443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.83  E-value=8.8e-09  Score=98.57  Aligned_cols=110  Identities=17%  Similarity=0.127  Sum_probs=74.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--------EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--------EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV  106 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--------~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l  106 (229)
                      ..+.++|+||||+|||||++++.+..++..|        -|.+++..+.. .. ....        . .++.  .+.+..
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~-~~i~--------~-~llg--~~~~~~  240 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DP-REVT--------N-PLLG--SVHDPI  240 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CH-HHHh--------H-HhcC--CccHHH
Confidence            4567999999999999999999998865444        36666544321 00 0000        0 0000  011111


Q ss_pred             HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          107 QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                               .......++.+|+.+.....+.++|||                +|++|| +..||+..+..+...+++
T Consensus       241 ---------~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       241 ---------YQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             ---------HHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence                     012334577788888888899999999                999999 899999999998888865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.81  E-value=4.7e-09  Score=85.27  Aligned_cols=68  Identities=19%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHH
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQW  108 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~  108 (229)
                      +||+++|+|+||||||||+++|+|++.+    +.++|.++......  .....++.+++....+..++..++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~--r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNI--DKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHH--HHHhcCCCCCcccchHHHHHHHHHHH
Confidence            6999999999999999999999999887    57888877432111  11123344444343444556565554

>PF00488 MutS_V: MutS domain V C-terminus

Probab=98.79  E-value=1.6e-07  Score=79.66  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=36.2

Q ss_pred             hcCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHh-CCcEEEEEeCChhhHHh
Q 027067          154 AIDRPIWLLDEPSVALDYDGV-RLLEYIIAEHRK-KGGIVIVATHLPIQIED  203 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~-~~l~~~l~~~~~-~g~tii~vtH~~~~~~~  203 (229)
                      +.+..++|+||+..|=++... .....+++.+.+ .+..+|++||+.+..+.
T Consensus       120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~~  171 (235)
T PF00488_consen  120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAEL  171 (235)
T ss_dssp             --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGGH
T ss_pred             cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHHH
Confidence            346779999999999999754 455667777776 48889999999865443

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.79  E-value=2.2e-08  Score=76.14  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCChhh
Q 027067          144 RKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-----KGGIVIVATHLPIQ  200 (229)
Q Consensus       144 kqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-----~g~tii~vtH~~~~  200 (229)
                      .+......+...++.++++||.-.. +......+...+.....     .+..+|++|+....
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~  132 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL  132 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence            5666667777889999999997664 45555667777777543     46789999997653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.79  E-value=8.2e-09  Score=94.43  Aligned_cols=63  Identities=17%  Similarity=0.277  Sum_probs=56.8

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD   73 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~   73 (229)
                      .++.+.++..+ .+..+++++ +.+.+||+++|+|+||+|||||+++|+|+.+++.|.+.+.|+.
T Consensus       129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeR  192 (433)
T PRK07594        129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGER  192 (433)
T ss_pred             ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCC
Confidence            47788888777 578899999 9999999999999999999999999999999999988777754

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.77  E-value=6.4e-09  Score=96.95  Aligned_cols=62  Identities=23%  Similarity=0.309  Sum_probs=57.8

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      +.|++..||+..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.+....+
T Consensus       187 ~~d~~~v~Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i  248 (506)
T PRK09862        187 QHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI  248 (506)
T ss_pred             ccCeEEEECcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence            46899999999999999999999999999999999999999999999999999998877655

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.71  E-value=1.7e-07  Score=92.49  Aligned_cols=51  Identities=27%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             HhcCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          153 LAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +-.+|.++++|||+..|| +..++.+.+.++..++.|.+++++||+++++..
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~  683 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDG  683 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhc
Confidence            345899999999999999 567889999999998889999999999987754

>PLN03210 Resistant to P

Probab=98.70  E-value=4.1e-08  Score=100.15  Aligned_cols=44  Identities=16%  Similarity=0.245  Sum_probs=36.5

Q ss_pred             eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-CCCccEEEEcCE
Q 027067           29 VNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-KPSAGEILWNGH   72 (229)
Q Consensus        29 vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-~p~~G~I~~~g~   72 (229)
                      ++++.+.+++++|+|++|+|||||++++++.. ...+|.+++++.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~  244 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA  244 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence            46778889999999999999999999996554 445799988753

syringae 6; Provisional

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.70  E-value=2.8e-08  Score=88.02  Aligned_cols=52  Identities=23%  Similarity=0.332  Sum_probs=47.2

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD   73 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~   73 (229)
                      .+.++++++ +.+.+|++++|+|+||+|||||+++|+|...|+.|.+..-|++
T Consensus        55 tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer  106 (326)
T cd01136          55 TGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGER  106 (326)
T ss_pred             CCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecC
Confidence            457899999 9999999999999999999999999999999999888776654

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.69  E-value=3e-08  Score=90.67  Aligned_cols=55  Identities=20%  Similarity=0.370  Sum_probs=49.8

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc---cEEEEcCEeCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA---GEILWNGHDITQ   76 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~---G~I~~~g~~~~~   76 (229)
                      .+.++++++ +++.+||+++|+|+||+|||||+++|++...++.   |.|..+|+++..
T Consensus       137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e  194 (428)
T PRK08149        137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTE  194 (428)
T ss_pred             CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHH
Confidence            456799999 9999999999999999999999999999999887   888888887653

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.66  E-value=5.8e-09  Score=87.60  Aligned_cols=39  Identities=28%  Similarity=0.404  Sum_probs=30.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHH--CCCCCCccEEEEcC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLA--GFSKPSAGEILWNG   71 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~--Gl~~p~~G~I~~~g   71 (229)
                      -+++|+++.|.|++|||||||...++  ++ ++..+-+++..
T Consensus        16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~   56 (229)
T TIGR03881        16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTT   56 (229)
T ss_pred             CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEc
Confidence            47899999999999999999987554  44 44555566654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.65  E-value=5.1e-08  Score=89.50  Aligned_cols=49  Identities=20%  Similarity=0.334  Sum_probs=41.9

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNG   71 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g   71 (229)
                      +..+++++ |.+.+|++++|+|+||||||||+++|+|+.++ +.|.|.+.|
T Consensus       151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liG  200 (442)
T PRK06315        151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIG  200 (442)
T ss_pred             eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEEC
Confidence            45689988 99999999999999999999999999999854 446666644

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.64  E-value=4.1e-08  Score=66.01  Aligned_cols=39  Identities=31%  Similarity=0.452  Sum_probs=31.0

Q ss_pred             eeeeeEEEeC-CcEEEEEcCCCccHHHHHHHHHCCCCCCc
Q 027067           26 LRHVNISIHD-GGALVLTGTNGSGKSTFLRMLAGFSKPSA   64 (229)
Q Consensus        26 L~~vsl~i~~-Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~   64 (229)
                      +++.++++.+ |+++.|+||||||||||+.+|.=++-+..
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~   51 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT   51 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            3456667775 57999999999999999999987766543

>PRK14079 recF recombination protein F; Provisional

Probab=98.63  E-value=4.3e-08  Score=87.86  Aligned_cols=61  Identities=26%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CCCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          137 RMLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       137 ~~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      ..+|+||++++++|..|+         .+|+++|||||+++||...+..+.+.+...   ..++|-+|+.++.
T Consensus       262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~~~  331 (349)
T PRK14079        262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAPPG  331 (349)
T ss_pred             HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCCCC
Confidence            468999999999999999         899999999999999999999988887543   2345555544333

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.63  E-value=5.5e-08  Score=79.37  Aligned_cols=38  Identities=32%  Similarity=0.455  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ   76 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   76 (229)
                      |++++|+||||||||||+++|++...+   .+.+.+..+..
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~   39 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITR   39 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCC
Confidence            789999999999999999999999876   57777776654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.62  E-value=5.1e-08  Score=85.13  Aligned_cols=74  Identities=20%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCC--CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSK--PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL  112 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  112 (229)
                      -.++||.|+||||||||+++|.+++.  |++|+|.+-+.|-.....  ......++. +...+.+.+++.+.+.+...+
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~--~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~L  137 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN--QVLKERNLM-KKKGFPESYDMHRLVKFLSDL  137 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH--HHHHHcCCc-cccCCChhccHHHHHHHHHHH
Confidence            46999999999999999999999987  778888775555322211  112223432 444556667777766654433

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.61  E-value=6.4e-08  Score=81.60  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccE----EEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE----ILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF  109 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~----I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  109 (229)
                      .+..++||.||||||||||+++|++++++++|.    |.+++....     .......+++.+. .....+++.+...+.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~-----~~~~~~~g~~~~~-~~~~~~d~~~~~~~l  104 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLD-----NAVLDAHGLRPRK-GAPETFDVAGLAALL  104 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCC-----HHHHHhccccccc-CCCCCCCHHHHHHHH
Confidence            456799999999999999999999999999998    444442221     1122234554432 233455666655544


Q ss_pred             HH
Q 027067          110 EV  111 (229)
Q Consensus       110 ~~  111 (229)
                      ..
T Consensus       105 ~~  106 (229)
T PRK09270        105 RR  106 (229)
T ss_pred             HH
Confidence            33

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.61  E-value=5.8e-08  Score=89.14  Aligned_cols=53  Identities=21%  Similarity=0.299  Sum_probs=48.6

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|+|...++.|.|.+.|+.-
T Consensus       149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~  201 (441)
T PRK09099        149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG  201 (441)
T ss_pred             CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence            456799999 99999999999999999999999999999999999998888543

>TIGR00152 dephospho-CoA kinase

Probab=98.59  E-value=3.5e-08  Score=80.59  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=62.3

Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh--HHhhhccCCCCCCCCcchH
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ--IEDAMNLRLPPRFPRRMTL  219 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~--~~~~~~~~~~~~~~~~~~~  219 (229)
                      |+-+|..||.++..+|+.+..+|  +.+||...+.+.+.+.+..+.|.+||+.+|.+.+  +...+|.-+-=..+....+
T Consensus        61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~  138 (188)
T TIGR00152        61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQL  138 (188)
T ss_pred             CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHH
Confidence            88999999999999999988887  7899999999998888876666799999998854  5555543332223333344


Q ss_pred             HhhhhhcCC
Q 027067          220 VDMLDRADI  228 (229)
Q Consensus       220 ~~~~~~~~~  228 (229)
                      ..++.|.++
T Consensus       139 ~Rl~~R~~~  147 (188)
T TIGR00152       139 ERLMQRDNL  147 (188)
T ss_pred             HHHHHcCCC
Confidence            455544443

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=98.58  E-value=1e-07  Score=87.01  Aligned_cols=62  Identities=18%  Similarity=0.270  Sum_probs=52.0

Q ss_pred             EEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067           11 LLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD   73 (229)
Q Consensus        11 l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~   73 (229)
                      ++-+.++..|. +..+++.+ |.+.+|++++|+|+||+|||||+++|++..+|+.+.+...|+.
T Consensus       112 ~~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer  174 (411)
T TIGR03496       112 LKRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGER  174 (411)
T ss_pred             HhccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecC
Confidence            45555665563 57889999 9999999999999999999999999999999988877666654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.57  E-value=6e-08  Score=88.90  Aligned_cols=51  Identities=22%  Similarity=0.304  Sum_probs=47.1

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD   73 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~   73 (229)
                      +..+++++ |.+.+|++++|+|+||+|||||+++|+|..+|+.|.+...|+.
T Consensus       132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~  182 (422)
T TIGR02546       132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGER  182 (422)
T ss_pred             Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccC
Confidence            56799999 9999999999999999999999999999999999998886554

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=98.57  E-value=9.7e-08  Score=69.16  Aligned_cols=51  Identities=22%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             cCCCCCCChhHHH-HHHHHHHH------hc------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          133 KEKARMLSMGQRK-RLQLARLL------AI------DRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       133 ~~~~~~LSgGqkq-Rv~lAral------~~------~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      .+....+|||||| .+.+|.++      ..      .|++++|||||++||....+.+.+++++
T Consensus        27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            5678899999994 44444333      23      3799999999999999999998888753

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.57  E-value=4.7e-08  Score=80.54  Aligned_cols=28  Identities=36%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++|++++|+||||||||||+++|++.++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5899999999999999999999999975

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.56  E-value=9e-08  Score=87.43  Aligned_cols=54  Identities=24%  Similarity=0.289  Sum_probs=47.8

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      .+..+++ .+|.+.+|++++|+|+||+|||||+++|++..+|+.|.|.+.|+.-.
T Consensus       126 tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~  179 (418)
T TIGR03498       126 TGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR  179 (418)
T ss_pred             CccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence            3556665 69999999999999999999999999999999999999988887643

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.55  E-value=7.1e-08  Score=85.37  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=53.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh-----hhhhcceEeecccccCCCCCHHHhHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH-----QYKLQLNWLSLKDAVKEKFTVLDNVQW  108 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~tv~e~l~~  108 (229)
                      .+|++++++|||||||||++..|++.+.+..++|.+.+.|..+.....     ..+.++.++++.....+..++++++..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~  191 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA  191 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence            578999999999999999999999999988889999887764321111     123456777665444444455666543

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.55  E-value=9.1e-08  Score=88.02  Aligned_cols=53  Identities=21%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .+..+++++ +.+.+|++++|+|+||+|||||+++|+|..+++.|.+...|+.-
T Consensus       149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~  201 (440)
T TIGR01026       149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG  201 (440)
T ss_pred             ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence            356789999 99999999999999999999999999999999988777766543

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.55  E-value=1.3e-07  Score=86.33  Aligned_cols=53  Identities=25%  Similarity=0.312  Sum_probs=48.6

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .+.++++++ +.+.+|++++|+|+||+|||||+++|++..+++.|.|.+.|+..
T Consensus       123 tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~  175 (413)
T TIGR03497       123 TGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERG  175 (413)
T ss_pred             ccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccch
Confidence            456799999 99999999999999999999999999999999999988888654

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR00767 rho transcription termination factor Rho

Probab=98.54  E-value=1.8e-07  Score=84.66  Aligned_cols=54  Identities=19%  Similarity=0.260  Sum_probs=48.6

Q ss_pred             CcEEEEeEEEEeCC-eeeee-----------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067            9 PRLLLKNVSCMRNA-QQILR-----------HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus         9 ~~l~l~~l~~~~~~-~~iL~-----------~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      ..+.++||++.|.+ +.+|+           |+++.|.+|+.++|+||.|||||||++.|+..+..
T Consensus       129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~  194 (415)
T TIGR00767       129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR  194 (415)
T ss_pred             CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence            35999999999965 56887           99999999999999999999999999999988653

Members of this family differ in the specificity of RNA binding.

>PRK09183 transposase/IS protein; Provisional

Probab=98.51  E-value=9e-07  Score=76.17  Aligned_cols=36  Identities=28%  Similarity=0.377  Sum_probs=31.7

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .|.+++| +++|+.+.|+||+|+|||+|..+|+....
T Consensus        92 ~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~  127 (259)
T PRK09183         92 SLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV  127 (259)
T ss_pred             HHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5778888 99999999999999999999999966543

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.49  E-value=4e-07  Score=73.49  Aligned_cols=33  Identities=21%  Similarity=0.375  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      |++++|+||||||||||++.|++.+.+. |.+.+
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~   33 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHF   33 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEE
Confidence            6789999999999999999999987654 65555

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR00235 udk uridine kinase

Probab=98.49  E-value=8e-08  Score=79.71  Aligned_cols=29  Identities=28%  Similarity=0.306  Sum_probs=27.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      ++|++++|+||||||||||++.|++++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            57999999999999999999999999876

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
1sgw_A	214	Putative Abc Transporter (Atp-Binding Protein) From		8e-12
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		8e-11
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		5e-10
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		8e-10
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		3e-09
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		4e-09
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		4e-09
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-09
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		5e-09
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		5e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		7e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		1e-08
1g29_1	372	Malk Length = 372		1e-08
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		3e-08
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		5e-08
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		5e-08
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		2e-07
4hlu_D	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		3e-07
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		4e-07
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		4e-07
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		4e-07
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		4e-07
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		4e-07
3j15_B	593	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		5e-07
3bk7_A	607	Structure Of The Complete Abce1RNAASE-L Inhibitor P		6e-07
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		7e-07
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		8e-07
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		8e-07
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		8e-07
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		9e-07
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		9e-07
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		1e-06
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-06
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-06
1yqt_A	538	Rnase-L Inhibitor Length = 538		3e-06
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		3e-06
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		3e-06
2pjz_A	263	The Crystal Structure Of Putative Cobalt Transport		4e-06
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		4e-06
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		5e-06
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		6e-06
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		6e-06
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		7e-06
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		7e-06
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		1e-05
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		1e-05
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		2e-05
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		2e-05
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-05
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		5e-05
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		6e-05
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		6e-05
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		8e-05
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		1e-04
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
3j16_B	608	Models Of Ribosome-Bound Dom34p And Rli1p And Their		2e-04
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		4e-04
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		4e-04
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		5e-04
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		5e-04

>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 90/179 (50%), Gaps = 16/179 (8%)
Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           + +L  + ++I  G  +   G NG GK+T L+ ++ + KP  GEI++NG  IT      +
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------K 75
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN------SLPALELMGLGRLAKEKA 136
            K ++ +L  +  V  K +V D ++    L G + N      +L ++E++ L    K+K 
Sbjct: 76  VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL----KKKL 131
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVAT 195
             LS G            ++  I++LD+P VA+D D    +   I E  K+ GIVI+++
Sbjct: 132 GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 91/188 (48%), Gaps = 13/188 (6%)
Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           ++IL+ ++  I +G    L G NG+GK+T LR+++   KPS+G +   G ++ +    H+
Sbjct: 28  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP--HE 85
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP--------ALELMGLGRLAKE 134
            +  +++L  +      +  +  +++   + G   +S          A E+ GLG   K+
Sbjct: 86  VRKLISYLPEEAGA---YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 142
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
           +    S G            ++  + +LDEP+  LD    R +  I+ +  ++G  ++V+
Sbjct: 143 RVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVS 202
Query: 195 THLPIQIE 202
           +H  +++E
Sbjct: 203 SHNMLEVE 210

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 82/181 (45%), Gaps = 11/181 (6%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI-TQSGIFHQY 83
           +L  +++S+  G  L + G +G GK+T LR LAGF +P +GEI  +G  I +++      
Sbjct: 19  VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-------PALELMGLGRLAKEKA 136
           + +L +L  +  +    TV  N+ +   L   +G +          LEL G+  LA    
Sbjct: 79  ERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQERQRIEAMLELTGISELAGRYP 136
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRKKGGIVIVAT 195
             LS G             D  + LLDEP  ALD    R + E +IA  R  G   +  +
Sbjct: 137 HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVS 196
Query: 196 H 196
           H
Sbjct: 197 H 197

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 30/190 (15%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH--DITQSGIFHQY 83
           L+ +N++I  G    + G NG GKST  +   G  KPS+G IL++    D ++ GI    
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGI---- 79
Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWF------EVLEGKQGNSLP----------ALELMG 127
                 + L++++   F   DN Q F      +V  G     LP          AL+  G
Sbjct: 80  ------MKLRESIGIVFQDPDN-QLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTG 132
Query: 128 LGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           +  L  +    LS G            ++  + +LDEP+  LD  GV  +  ++ E +K+
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192
Query: 188 GGI-VIVATH 196
            GI +I+ATH
Sbjct: 193 LGITIIIATH 202

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L HV+ SI  G  + L G +GSGKST   +   F    +G I  +GHD+        YKL
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV------RDYKL 412
Query: 86  Q--LNWLSLKDAVKEKF--TVLDNVQWF-------EVLE--GKQGNSLPALELM--GLGR 130
                  +L       F  T+ +N+ +        E +E   +Q +++  +E M  GL  
Sbjct: 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDT 472
Query: 131 LAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
           +  E    LS G             D P+ +LDE + ALD +  R ++  + E +K   +
Sbjct: 473 VIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTV 532
Query: 191 VIVATHLPIQIEDA 204
           +++A  L   IE A
Sbjct: 533 LVIAHRLST-IEQA 545

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-----GHDITQS 77
           ++ L +V++ I++G  L++ G  GSGKST L+++AG  +P++G++L++     G++I ++
Sbjct: 20  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 79
Query: 78  -GIFHQYK-----LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
            GI  QY       +  +  +  AVK  +   D V   +           A+E +GL   
Sbjct: 80  IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK----------KAMEFVGLDFD 129
Query: 132 A-KEKARMLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
           + K++      G            +  P I +LDEP V LD +G   L  I+ + +  G 
Sbjct: 130 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 189
Query: 190 IVIVATHLPIQIEDAMN 206
            VI+ +H    IE  +N
Sbjct: 190 TVILISH---DIETVIN 203

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQ 82
           ++L+ +N+ I +G  +V+ G +GSGKSTFLR L        GEI+ +G ++       ++
Sbjct: 17  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNV--------QWFEVLEGKQGNSLPALELMGLGRLAKE 134
            + ++  +  +  +    TVL+N+        +W    E  +  ++  L+ +GL   A  
Sbjct: 77  VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--EKAEAKAMELLDKVGLKDKAHA 134
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
               LS G            ++  I L DEP+ ALD + V  +  ++ +   +G  ++V 
Sbjct: 135 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 195 TH 196
           TH
Sbjct: 195 TH 196

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 96/197 (48%), Gaps = 26/197 (13%)
Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN-----GHDITQS 77
           ++ L +V++ I++G  L++ G  GSGKST L+++AG  +P++G++L++     G++I ++
Sbjct: 22  KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRN 81
Query: 78  -GIFHQYK-----LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL 131
            GI  QY       +  +  +  AVK  +   D V   +           A+E +GL   
Sbjct: 82  IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK----------KAMEFVGLDFD 131
Query: 132 A-KEKARMLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
           + K++      G            +  P I +LDEP V LD +G   L  I+ + +  G 
Sbjct: 132 SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK 191
Query: 190 IVIVATHLPIQIEDAMN 206
            VI+ +H    IE  +N
Sbjct: 192 TVILISH---DIETVIN 205

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---TQSGIFHQ 82
           LR++N+ I  G  + L G +GSGKST   ++  F     GEIL +GHD+   T + + +Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 83  YKL-QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELM-----GLGRLAKEKA 136
             L   N     D V          Q+      +      A++ +     GL  +  E  
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 137 RMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            +LS G             D PI +LDE + ALD +  R ++  + E +K    +++A  
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
Query: 197 LPIQIEDA 204
           L   IE A
Sbjct: 539 LS-TIEKA 545

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 11/182 (6%)
Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-FHQ 82
           ++L+ +N+ I +G  +V+ G +GSGKSTFLR L        GEI+ +G ++       ++
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNV--------QWFEVLEGKQGNSLPALELMGLGRLAKE 134
            + ++  +  +  +    TVL+N+        +W    E  +  ++  L+ +GL   A  
Sbjct: 98  VREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPR--EKAEAKAMELLDKVGLKDKAHA 155
Query: 135 KARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA 194
               LS G            ++  I L DEP+ ALD + V  +  ++ +   +G  ++V 
Sbjct: 156 YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 195 TH 196
           TH
Sbjct: 216 TH 217

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
           L++VN++I +G  + + G +GSGKST L ++    KP+ GE+  +    +D+    +   
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
            + ++ ++  +  +    T L+NV+   +         E ++  +L  L++  L  R A 
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
            K   LS G             + PI L D+P+ ALD   G ++++ +   + + G  V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
           V TH
Sbjct: 201 VVTH 204

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
           L++VN++I +G  + + G +GSGKST L ++    KP+ GE+  +    +D+    +   
Sbjct: 21  LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
            + ++ ++  +  +    T L+NV+   +         E ++  +L  L++  L  R A 
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
            K   LS G             + PI L D+P+ ALD   G ++++ +   + + G  V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
           V TH
Sbjct: 201 VVTH 204

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 9/180 (5%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQY 83
           +R +++ + DG  ++L G +G GK+T LRM+AG  +PS G+I      +   + GIF   
Sbjct: 19  VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 84  KLQLNWLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEKAR 137
           K +   +  +  A+    TV DN+ +   L       +        EL+GL  L   K R
Sbjct: 79  KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPR 138
Query: 138 MLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVIVATH 196
            LS G                ++L+DEP   LD    VR+   +    R+ G   I  TH
Sbjct: 139 ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG---HDITQSGIFHQ 82
           L++VN++I +G  + + G +GSGKST L ++    KP+ GE+  +    +D+    +   
Sbjct: 21  LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVL--------EGKQGNSLPALELMGL-GRLAK 133
            + ++ ++  +  +    T L+NV+   +         E ++  +L  L+   L  R A 
Sbjct: 81  RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 134 EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGIVI 192
            K   LS G             + PI L DEP+ ALD   G ++ + +   + + G  V+
Sbjct: 141 HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVV 200
Query: 193 VATH 196
           V TH
Sbjct: 201 VVTH 204

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 84/194 (43%), Gaps = 22/194 (11%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           LR++N+ I  G  + L G +GSGKST   ++  F     G IL +GHD+       +Y L
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL------REYTL 412
Query: 86  Q--LNWLSLKDAVKEKF--TVLDNVQWFEVLE---------GKQGNSLPALELM--GLGR 130
               N ++L       F  TV +N+ +    E          +   ++  +  M  GL  
Sbjct: 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 131 LAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
           +  E   +LS G             D PI +LDE + ALD +  R ++  + E +K    
Sbjct: 473 IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532
Query: 191 VIVATHLPIQIEDA 204
           +++A  L   IE A
Sbjct: 533 LVIAHRLS-TIEQA 545

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGIF 80
           +N++I DG  LVL G +G GK+T LRM+AG  +P+ G I +   D+T         S +F
Sbjct: 31  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 90
Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEK 135
             Y           AV    TV +N+ +   ++    + +      A EL+ +  L    
Sbjct: 91  QSY-----------AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 139
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALD 170
              LS G            ++  + L+DEP   LD
Sbjct: 140 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 67/155 (43%), Gaps = 24/155 (15%)
Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SGIF 80
           +N++I DG  LVL G +G GK+T LRM+AG  +P+ G I +   D+T         S +F
Sbjct: 30  LNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 89
Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEK 135
             Y           AV    TV +N+ +   ++    + +      A EL+ +  L    
Sbjct: 90  QSY-----------AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRY 138
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALD 170
              LS G            ++  + L+DEP   LD
Sbjct: 139 PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
          L ++N+ I DG  + L G +GSGKST L  +AG  KP++G+I ++  D+T+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69

>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 15  NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
           +VS   N   +L+ VN     G   V+ G NGSGK+T L++LAG    +AGEI  +G   
Sbjct: 16  SVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIFLDGSPA 74
Query: 75  -------TQSGIFHQYKLQLNWLSLKDAVKEKFTV--LDNVQWFEVLEGKQGNSLPALEL 125
                      +F     Q+   ++++ V     +  LD  +  + ++         LEL
Sbjct: 75  DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIK-------KVLEL 127
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
           +GL  LA      LS G             D     LDEP   LD    R +  ++   +
Sbjct: 128 VGLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK 187
Query: 186 KKGGIVIVATH 196
            +G  +I+ TH
Sbjct: 188 NEGKGIILVTH 198

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 70
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 71  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
             +  E+   LS G             +  I + DE + ALDY+     E++I  +    
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 185
Query: 187 -KGGIVIVATHLPIQIEDA 204
            KG  VI+  H    +++A
Sbjct: 186 CKGRTVIIIAHRLSTVKNA 204

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 77  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
             +  E+   LS G             +  I + DE + ALDY+     E++I  +    
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 191
Query: 187 -KGGIVIVATHLPIQIEDA 204
            KG  VI+  H    +++A
Sbjct: 192 CKGRTVIIIAHRLSTVKNA 210

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
           + + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++       N     + G 
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79  --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
             +F  Y           A+    +V +N+ +   L G +   +        E++ L  L
Sbjct: 78  GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
              K + LS G             +  ++LLDEP   LD    V++   I   H++ G  
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
           +I  TH
Sbjct: 187 MIYVTH 192

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
           + + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++       N     + G 
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79  --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
             +F  Y           A+    +V +N+ +   L G +   +        E++ L  L
Sbjct: 78  GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
              K + LS G             +  ++LLDEP   LD    V++   I   H++ G  
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
           +I  TH
Sbjct: 187 MIYVTH 192

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 20  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 72
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 73  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
             +  E+   LS G             +  I + DE + ALDY+     E++I  +    
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 187
Query: 187 -KGGIVIVATHLPIQIEDA 204
            KG  VI+  H    +++A
Sbjct: 188 CKGRTVIIIAHRLSTVKNA 206

>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 32  SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
            I  G  + + G NG GK+TF++MLAG  +P+ G++ W   D+T +     YK Q     
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVA-----YKPQYIKAE 415
Query: 92  LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---MGLGRLAKEKARMLSMGXXXXXX 148
            +  V E  + +D+         K  ++    EL   +G+  L       LS G      
Sbjct: 416 YEGTVYELLSKIDS--------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 467
Query: 149 XXXXXXIDRPIWLLDEPSVALD 170
                  D  I+LLDEPS  LD
Sbjct: 468 IAATLLRDADIYLLDEPSAYLD 489

>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 19/142 (13%)
Query: 32  SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
            I  G  + + G NG GK+TF++MLAG  +P+ G++ W   D+T +     YK Q     
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW---DLTVA-----YKPQYIKAE 429
Query: 92  LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL---MGLGRLAKEKARMLSMGXXXXXX 148
            +  V E  + +D+         K  ++    EL   +G+  L       LS G      
Sbjct: 430 YEGTVYELLSKIDS--------SKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVA 481
Query: 149 XXXXXXIDRPIWLLDEPSVALD 170
                  D  I+LLDEPS  LD
Sbjct: 482 IAATLLRDADIYLLDEPSAYLD 503

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 31/199 (15%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G  GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 20  ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 72
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 73  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 131
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
             +  E+   LS G             +  I + DE + ALDY+     E++I  +    
Sbjct: 132 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES----EHVIMRNMHKI 187
Query: 187 -KGGIVIVATHLPIQIEDA 204
            KG  VI+  H    +++A
Sbjct: 188 CKGRTVIIIAHRLSTVKNA 206

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 70
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 71  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 129
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
             +  E+   LS G             +  I + DE + ALDY+   ++   + +  K  
Sbjct: 130 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 189
Query: 189 GIVIVATHL 197
            ++I+A  L
Sbjct: 190 TVIIIAARL 198

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 81/189 (42%), Gaps = 24/189 (12%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 77  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
             +  E+   LS G             +  I + DE + ALDY+   ++   + +  K  
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR 195
Query: 189 GIVIVATHL 197
            ++I+A  L
Sbjct: 196 TVIIIAARL 204

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 82/198 (41%), Gaps = 34/198 (17%)
Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI------ 74
           N   IL+ +N+SI  G  +   G +G GKST + ++  F   ++G+IL +GH+I      
Sbjct: 352 NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 411
Query: 75  ---TQSGIFHQYKLQLNWLSLKDAVKEKF-----TVLDNVQWFEVLE-GKQGNS------ 119
               Q G+  Q     + +   D VKE       T  D     EV+E  K  N+      
Sbjct: 412 SLRNQIGLVQQ-----DNILFSDTVKENILLGRPTATDE----EVVEAAKMANAHDFIMN 462
Query: 120 LPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEY 179
           LP     G      E+   LS G             + PI +LDE + ALD +   +++ 
Sbjct: 463 LP----QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 180 IIAEHRKKGGIVIVATHL 197
            +    K    +IVA  L
Sbjct: 519 ALDVLSKDRTTLIVAHRL 536

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----WNGHDITQSG- 78
           + + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++       N     + G 
Sbjct: 18  VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGV 77
Query: 79  --IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRL 131
             +F  Y           A+    +V +N+ +   L G +   +        E++ L  L
Sbjct: 78  GMVFQSY-----------ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHL 126
Query: 132 AKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRKKGGI 190
              K + LS G             +  ++LLD+P   LD    V++   I   H++ G  
Sbjct: 127 LDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 191 VIVATH 196
           +I  TH
Sbjct: 187 MIYVTH 192

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+  +       
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA------- 76
Query: 85  LQLNWLS------LKDAVKEKFTVLDNVQWFE--------VLEGKQGNSLPALELM--GL 128
              NWL       L+D V    +++DN+            +   K   +   +  +  G 
Sbjct: 77  -DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGY 135
Query: 129 GRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-- 186
             +  E+   LS G             +  I + D+ + ALDY+     E++I  +    
Sbjct: 136 NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYES----EHVIMRNMHKI 191
Query: 187 -KGGIVIVATHLPIQIEDA 204
            KG  VI+  H    +++A
Sbjct: 192 CKGRTVIIIAHRLSTVKNA 210

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 73/182 (40%), Gaps = 19/182 (10%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           +R V+  I +G  + L G +GSGK+T LR++AG  +P+ G++   G  +T        K 
Sbjct: 31  VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTD---LPPQKR 87
Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA----------LELMGLGRLAKEK 135
            +  +    A+ +  TV DNV +     G +   +P           L  M L   A   
Sbjct: 88  NVGLVFQNYALFQHMTVYDNVSF-----GLREKRVPKDEMDARVRELLRFMRLESYANRF 142
Query: 136 ARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVA 194
              LS G                + L DEP  A+D    R L   + + H + G   +  
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202
Query: 195 TH 196
           TH
Sbjct: 203 TH 204

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 25   ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            +L+ +++ +  G  L L G++G GKST +++L  F  P AG +  +G +I Q  +    +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLR 1106
Query: 85   LQLNWLS-----LKDAVKEKFTVLDN---VQWFEVLE-GKQGN------SLPALELMGLG 129
             QL  +S        ++ E     DN   V + E++   K+ N      SLP      +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 130  RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
                +K   LS G                I LLDE + ALD +  ++++  + + R +G 
Sbjct: 1167 ----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGR 1221
Query: 190  IVIVATHLPIQIEDA 204
              IV  H    I++A
Sbjct: 1222 TCIVIAHRLSTIQNA 1236

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 25   ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            +L+ +++ +  G  L L G++G GKST +++L  F  P AG +  +G +I Q  +    +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLR 1106
Query: 85   LQLNWLS-----LKDAVKEKFTVLDN---VQWFEVLE-GKQGN------SLPALELMGLG 129
             QL  +S        ++ E     DN   V + E++   K+ N      SLP      +G
Sbjct: 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166
Query: 130  RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
                +K   LS G                I LLDE + ALD +  ++++  + + R +G 
Sbjct: 1167 ----DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGR 1221
Query: 190  IVIVATHLPIQIEDA 204
              IV  H    I++A
Sbjct: 1222 TCIVIAHRLSTIQNA 1236

>pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 21/143 (14%)
Query: 32  SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLS 91
            I  G  + + G NG GK+TF++ LAG  +P+ G+I W   D+T +     YK Q     
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEW---DLTVA-----YKPQYIKAD 359
Query: 92  LKDAVKEKFTVLD----NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXX 147
            +  V E  + +D    N  +++            L+ +G+  L   +   LS G     
Sbjct: 360 YEGTVYELLSKIDASKLNSNFYKT---------ELLKPLGIIDLYDREVNELSGGELQRV 410
Query: 148 XXXXXXXIDRPIWLLDEPSVALD 170
                   D  I+LLDEPS  LD
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLD 433

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 14/188 (7%)
Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           + ++ L+ V+ ++  G  L L G +G+GKST LR+L  F   S+G I  +G DI+Q    
Sbjct: 65  DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQ---V 121
Query: 81  HQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALEL----------MGLG 129
            Q  L+ +  +  +D V    T+ DN+++  V  G       A              G  
Sbjct: 122 TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYR 181
Query: 130 RLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG 189
               E+   LS G                I LLDE + ALD    R ++  +A+      
Sbjct: 182 TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRT 241
Query: 190 IVIVATHL 197
            ++VA  L
Sbjct: 242 TIVVAHRL 249

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           I +  ++SI  G    L G +GSGKST L +L     P++G I  +GHDI Q        
Sbjct: 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-------- 410
Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALEL----------------- 125
           L   WL  K     +  +L +    E +       +S+ A E+                 
Sbjct: 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 470
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
            G   +  EK  +LS G             +  I LLDE + ALD +     EY++ E  
Sbjct: 471 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN----EYLVQEAL 526
Query: 186 KK---GGIVIVATHLPIQIEDA 204
            +   G  V+V  H    I++A
Sbjct: 527 DRLMDGRTVLVIAHRLSTIKNA 548

>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 12/173 (6%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L ++N+ + +G  +++ G NGSGK+T LR ++G   P +G I  NG ++ +   + +Y  
Sbjct: 21  LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYS- 77
Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN-SLPALELMGLG-RLAKEKARMLSMGX 143
                +L +A +   TV D V  +E L+G   +  L  L+ + LG  + + K   LS G 
Sbjct: 78  ----TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQ 133
Query: 144 XXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
                          I  LDEP   +D     ++   I E+ K+G   I+ TH
Sbjct: 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEG---ILVTH 183

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 80/202 (39%), Gaps = 34/202 (16%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           I +  ++SI  G    L G +GSGKST L +L     P++G I  +GHDI Q        
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ-------- 441
Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALEL----------------- 125
           L   WL  K     +  +L +    E +       +S+ A E+                 
Sbjct: 442 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFP 501
Query: 126 MGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
            G   +  EK  +LS G             +  I LLDE + ALD +     EY++ E  
Sbjct: 502 QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN----EYLVQEAL 557
Query: 186 KK---GGIVIVATHLPIQIEDA 204
            +   G  V+V  H    I++A
Sbjct: 558 DRLMDGRTVLVIAHHLSTIKNA 579

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 74/182 (40%), Gaps = 37/182 (20%)
Query: 19  MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
           MR+  +ILR                V+IS++ G   ++ G NGSGKST + ++ GF K  
Sbjct: 1   MRDTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64  AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG-NSL 120
            G + +   DIT  +    + Y + +        +KE  TVL+N+   E+  G+   NSL
Sbjct: 61  EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEICPGESPLNSL 118
Query: 121 -----------------PALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
                              LE + L  L   KA  LS G             +  + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
           EP
Sbjct: 179 EP 180

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 8/179 (4%)
Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-GIFHQY 83
           + + +N  ++ G  L + G NG GKST L +L G  +P  G+I     ++ QS G   Q+
Sbjct: 20  LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI-----EVYQSIGFVPQF 74
Query: 84  KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGX 143
                  S+ D V    +   N  + +        ++ AL+ + L  LAK +   LS G 
Sbjct: 75  FSSPFAYSVLDIVLMGRSTHINT-FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQ 133
Query: 144 XXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRL-LEYIIAEHRKKGGIVIVATHLPIQI 201
                       +  + LLDEP+ ALD     + L  +I   + +   V+  TH P Q+
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQV 192

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 10/154 (6%)
Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQY 83
           ++ +++ I DG  LVL G +G GK+T LR +AG  +P+ G+I    + +   + G+F   
Sbjct: 22  VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 84  KLQ-LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL-----PALELMGLGRLAKEKAR 137
           K + +  +    A+    TV DN+ +   L       +        E +GL  L   K R
Sbjct: 82  KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKPR 141
Query: 138 MLSMGXXXXXXXXXXXXIDRP-IWLLDEPSVALD 170
            LS G            I RP ++L DEP   LD
Sbjct: 142 ELS-GGQRQRVALGRAIIRRPKVFLXDEPLSNLD 174

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG 78
          L +VNI+I +G    + G +G+GK+TF+R++AG   PS GE+ ++   +  +G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG 78
          L +VNI+I +G    + G +G+GK+TF+R++AG   PS GE+ ++   +  +G
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 29  VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN 88
           V+  + DG  + L G +G GK+T L MLAG  KP++GEI ++  D+  + I  +Y+ ++ 
Sbjct: 22  VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYR-EVG 78
Query: 89  WLSLKDAVKEKFTVLDNVQW 108
            +    A+    TV +N+ +
Sbjct: 79  MVFQNYALYPHMTVFENIAF 98

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75
          L ++++ +  G   V+ G  G+GK+ FL ++AGF  P +G IL +G D+T
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 6/134 (4%)
Query: 40  VLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK 99
           VL G  G+GKS FL ++AG  KP  GE+  NG DIT        +  + ++    A+   
Sbjct: 28  VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP---LPPERRGIGFVPQDYALFPH 84
Query: 100 FTVLDNVQW---FEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXID 156
            +V  N+ +         +        E +G+  L   K   LS G            I 
Sbjct: 85  LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 157 RPIWLLDEPSVALD 170
             + LLDEP  A+D
Sbjct: 145 PRLLLLDEPLSAVD 158

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 70/182 (38%), Gaps = 37/182 (20%)
Query: 19  MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
           MR+  +ILR                V+IS+  G   ++ G NGSGKST + ++ GF K  
Sbjct: 1   MRDTMEILRTENIVKYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64  AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------------- 106
            G + +   DIT  +    + Y + +        +KE  TVL+N+               
Sbjct: 61  EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEINPGESPLNSL 118
Query: 107 ---QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
              +W    E     +   LE + L  L   KA  LS G             +  + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
           EP
Sbjct: 179 EP 180

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 37/182 (20%)
Query: 19  MRNAQQILRH---------------VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS 63
           MR+  +ILR                V+IS++ G   ++ G NGSGKST + ++ GF K  
Sbjct: 1   MRDTMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD 60
Query: 64  AGEILWNGHDIT--QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------------- 106
            G + +   DIT  +    + Y + +        +KE  TVL+N+               
Sbjct: 61  EGRVYFENKDITNKEPAELYHYGI-VRTFQTPQPLKE-MTVLENLLIGEINPGESPLNSL 118
Query: 107 ---QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLD 163
              +W    E     +   LE + L  L   KA  LS G             +  + ++D
Sbjct: 119 FYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178
Query: 164 EP 165
           +P
Sbjct: 179 QP 180

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
          +++QILR ++        +   G +G GKST   +L  F +P+AGEI  +G  I    + 
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL- 71
Query: 81 HQYKLQLNWLSLKDAV 96
            ++ Q+ ++S   A+
Sbjct: 72 ENWRSQIGFVSQDSAI 87

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT 75
          ++ +++ +  G  + L G NG+GK+T L  +AG  +   G+I++NG DIT
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDIT 71

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
           Q L +V++ +  G    + G +G+GKST +R +    +P+ G +L +G ++T        
Sbjct: 19  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 78
Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
               Q G+  Q+    N LS +       TV  NV     L+    + +       L L+
Sbjct: 79  KARRQIGMIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 128
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
           GLG         LS G             +  + L DE + ALD    R +LE +   +R
Sbjct: 129 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
Query: 186 KKGGIVIVATH 196
           + G  +++ TH
Sbjct: 189 RLGLTILLITH 199

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
          Q ++  V++ I  G  + + G NG+GKST LR+L G+  PS GE    G ++
Sbjct: 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
           Q L +V++ +  G    + G +G+GKST +R +    +P+ G +L +G ++T        
Sbjct: 42  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
               Q G+  Q+    N LS +       TV  NV     L+    + +       L L+
Sbjct: 102 KARRQIGMIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
           GLG         LS G             +  + L D+ + ALD    R +LE +   +R
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 186 KKGGIVIVATH 196
           + G  +++ TH
Sbjct: 212 RLGLTILLITH 222

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
          Q+L+ +  +++ G    L G NGSGKST   +L    +P+ G++L +G  + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85

>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 27/174 (15%)
Query: 35  DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD 94
           D   LV+ G NG+GK+T +++LAG  KP  G+      DI           +LN      
Sbjct: 377 DSEILVMMGENGTGKTTLIKLLAGALKPDEGQ------DIP----------KLNVSMKPQ 420
Query: 95  AVKEKFTVLDNVQWFEVLEGKQGN---SLPALELMGLGRLAKEKARMLSMGXXXXXXXXX 151
            +  KF       +F+ + G+  N       ++ + +  +  ++ + LS G         
Sbjct: 421 KIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVL 480
Query: 152 XXXIDRPIWLLDEPSVALDYDGVRLLEYIIAE---HRKKGGIV-----IVATHL 197
              I   I+L+DEPS  LD +   +   +I     H KK   +     I+AT+L
Sbjct: 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
          Q+L+ +  +++ G    L G NGSGKST   +L    +P+ G++L +G  + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ 76
          Q+L+ +  +++ G    L G NGSGKST   +L    +P+ G++L +G  + Q
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 28/191 (14%)
Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT-------- 75
           Q L +V++ +  G    + G +G+GKST +R +    +P+ G +L +G ++T        
Sbjct: 42  QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101
Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELM 126
               Q G   Q+    N LS +       TV  NV     L+    + +       L L+
Sbjct: 102 KARRQIGXIFQH---FNLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLV 151
Query: 127 GLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHR 185
           GLG         LS G             +  + L D+ + ALD    R +LE +   +R
Sbjct: 152 GLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
Query: 186 KKGGIVIVATH 196
           + G  +++ TH
Sbjct: 212 RLGLTILLITH 222

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 84/199 (42%), Gaps = 26/199 (13%)
Query: 15  NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI 74
           N+  +    +IL+ +++S+  G  + + G +GSGKST L +L     P+ G++   G ++
Sbjct: 9   NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
Query: 75  TQS-----GIFHQYKL----QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-------QGN 118
             +      +    KL    Q ++L        + T L+NV    +  GK       +G 
Sbjct: 69  DYTNEKELSLLRNRKLGFVFQFHYLI------PELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 119 SLPALELMGLGRLAKEKARMLSMGXXXXXXXXXXXXIDRPIWLL-DEPSVALDYDGVRLL 177
            L  L  +GLG     K   LS G             + PI L  DEP+  LD    + +
Sbjct: 123 YL--LSELGLGDKLSRKPYELS-GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 178 EYIIAEHRKKGGIVIVATH 196
             I  +  + G  +++ TH
Sbjct: 180 MDIFLKINEGGTSIVMVTH 198

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------ 75
             ++L+ V++    G  + + G++GSGKSTFLR +    KPS G I+ NG +I       
Sbjct: 18  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 76  -QSGIFHQYKLQLNWLSLKDAVKE-----KFTVLDNVQW--FEVL----EGKQGNSLPAL 123
            Q  +  + +L+L    L    +        TVL+NV     +VL       +  +L  L
Sbjct: 78  GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 124 ELMGLGRLAKEKARM-LSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
             +G+   A+ K  + LS G            ++  + L DEP+ ALD + V  +  I+ 
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197
Query: 183 EHRKKGGIVIVATH 196
           +  ++G  ++V TH
Sbjct: 198 QLAEEGKTMVVVTH 211

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 79/191 (41%), Gaps = 24/191 (12%)
Query: 24   QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
            +IL+ ++ S+  G  L L G +G GKST + +L  F     GEI  +G +I      H  
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHT- 1151
Query: 84   KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK---------- 133
            + Q+  +S      ++ T+ D      ++ G   +S+   ++    RLA           
Sbjct: 1152 RSQIAIVS------QEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE 1205
Query: 134  -------EKARMLSMGXXXXXXXXXXXXIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK 186
                   ++   LS G             +  I LLDE + ALD +  ++++  +   R+
Sbjct: 1206 GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE 1265
Query: 187  KGGIVIVATHL 197
                +++A  L
Sbjct: 1266 GRTCIVIAHRL 1276

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	2e-30
1sgw_A	214	Putative ABC transporter; structural genomics, P p	2e-29
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	3e-27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	9e-22
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	3e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-23
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	2e-26
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	5e-17
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	4e-26
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-25
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	3e-17
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	5e-24
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	6e-23
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	1e-22
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	1e-22
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	2e-22
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	6e-22
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	1e-20
1g6h_A	257	High-affinity branched-chain amino acid transport	5e-20
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	7e-20
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	1e-17
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	1e-16
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	2e-16
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	7e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	8e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-07
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-06
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	1e-14
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	5e-14
1b0u_A	262	Histidine permease; ABC transporter, transport pro	2e-14
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	3e-14
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	4e-14
1ji0_A	240	ABC transporter; ATP binding protein, structural g	9e-14
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	2e-13
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	5e-13
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	6e-13
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	1e-12
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	2e-12
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	2e-12
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	4e-12
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	1e-11
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	3e-11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	4e-11
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	6e-11
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	7e-11
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	9e-11
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-10
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	9e-10
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	1e-09
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	2e-09
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	2e-08
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	2e-08
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	4e-08
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	2e-07
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	6e-05

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  112 bits (283), Expect = 2e-30
 Identities = 50/233 (21%), Positives = 104/233 (44%), Gaps = 24/233 (10%)

Query: 2   TLRKPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61
            + +     + L  +  M+  + IL+ ++  I  G   +L G NG+GK+T L +L  +  
Sbjct: 13  LVPRGSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72

Query: 62  PSAGEILWNGHDITQSGI-FHQYKLQLNWLS--LKDAVKEKFTVLDNV---------QWF 109
            ++G +   G    + G      +  + ++S  L +  +E   V+D V          + 
Sbjct: 73  ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQ 132

Query: 110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169
           ++ +  +  +   L+L+G+   A++    LS G+++R+ +AR L     + +LDEP+  L
Sbjct: 133 DIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGL 192

Query: 170 DYDGVR-LLEYI--IAEHRKKGGIVIVATHLPIQIEDAMNLRLPPRFPRRMTL 219
           D+     LL  +  +++      ++ V TH    IE+         F + + L
Sbjct: 193 DFIARESLLSILDSLSDSYPTLAMIYV-TH---FIEEI-----TANFSKILLL 236

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  108 bits (272), Expect = 2e-29
 Identities = 55/178 (30%), Positives = 96/178 (53%), Gaps = 11/178 (6%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           + +L  + ++I  G  +   G NG GK+T L+ ++ + KP  GEI++NG  IT      +
Sbjct: 22  KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------K 75

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS---LPALELMGLGRLAKEKARML 139
            K ++ +L  +  V  K +V D ++    L G + N    + ALE + +  L K K   L
Sbjct: 76  VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK-KLGEL 134

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHRKKGGIVIVATH 196
           S G  +R+QLA  L ++  I++LD+P VA+D D    +L+ I+   ++KG ++I +  
Sbjct: 135 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE 192

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  107 bits (270), Expect = 3e-27
 Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 14/178 (7%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
                +L        D   LV+ G NG+GK+T +++LAG  KP  G+ +   +       
Sbjct: 362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLN------- 414

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARML 139
               K Q         V++ F     +   + L  +    +  ++ + +  +  ++ + L
Sbjct: 415 -VSMKPQKIAPKFPGTVRQLFF--KKI-RGQFLNPQFQTDV--VKPLRIDDIIDQEVQHL 468

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKKGGIVIVATH 196
           S G+ +R+ +   L I   I+L+DEPS  LD +  +   + I            +  H
Sbjct: 469 SGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 92.4 bits (230), Expect = 9e-22
 Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 20/207 (9%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           LP  L  +V+   +A     H   +   G  L L GTNG GKST L++LAG  KP+ G  
Sbjct: 75  LPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV---------------- 111
                       F   +LQ      K    +   ++       +                
Sbjct: 135 DDPPEWQEIIKYFRGSELQN--YFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK 192

Query: 112 --LEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVAL 169
             +E    +    ++++ L  + K     LS G+ +R  +      +  +++ DEPS  L
Sbjct: 193 LRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYL 252

Query: 170 DYDGVRLLEYIIAEHRKKGGIVIVATH 196
           D         II         VI   H
Sbjct: 253 DVKQRLNAAQIIRSLLAPTKYVICVEH 279

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  103 bits (260), Expect = 3e-27
 Identities = 41/176 (23%), Positives = 88/176 (50%), Gaps = 7/176 (3%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL 85
           L+ ++  I +G    L G NG+GK+T LR+++   KPS+G +   G ++ +     + + 
Sbjct: 31  LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH--EVRK 88

Query: 86  QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGLGRLAKEKARMLS 140
            +++L  +         ++ +++         + +      A E+ GLG   K++    S
Sbjct: 89  LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYS 148

Query: 141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            G  ++L +AR L ++  + +LDEP+  LD    R +  I+ +  ++G  ++V++H
Sbjct: 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  106 bits (266), Expect = 1e-26
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 20/176 (11%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            L      I  G  + + G NG GK+TF++MLAG  +P+ G++ W+            YK
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--------YK 422

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA---LELMGLGRLAKEKARMLSM 141
            Q      +  V E  +        ++   K  ++      L+ +G+  L       LS 
Sbjct: 423 PQYIKAEYEGTVYELLS--------KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSG 474

Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATH 196
           G+ +R+ +A  L  D  I+LLDEPS  LD +    +   I     K     +V  H
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 97.4 bits (243), Expect = 1e-23
 Identities = 45/200 (22%), Positives = 84/200 (42%), Gaps = 13/200 (6%)

Query: 8   LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           LP  L ++          + +    + DG  + + G NG+GK+T +++LAG   P+  E 
Sbjct: 89  LPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED 148

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKD-----AVKEKFTVLDNVQWF----EVLEGKQ-- 116
             +  ++ ++  F   +LQ  +  LK+      VK ++  L          E+L+     
Sbjct: 149 NDSWDNVIRA--FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV 206

Query: 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL 176
           G     ++ + L  +   +   LS G+ +R+ +A  L      +  DEPS  LD      
Sbjct: 207 GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266

Query: 177 LEYIIAEHRKKGGIVIVATH 196
           +  +I     +G  V+V  H
Sbjct: 267 VARVIRRLANEGKAVLVVEH 286

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  105 bits (263), Expect = 2e-26
 Identities = 38/178 (21%), Positives = 71/178 (39%), Gaps = 12/178 (6%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           +     L   N    +G  + + G NG GK+TF R+L G      G +      ++    
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS---- 333

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARML 139
              YK Q  + +    V++           + L           + + L RL +     L
Sbjct: 334 ---YKPQRIFPNYDGTVQQYLENASK----DALSTSSWFFEEVTKRLNLHRLLESNVNDL 386

Query: 140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKKGGIVIVATH 196
           S G+ ++L +A  LA +  +++LD+PS  LD +    + + I    R++  +  +  H
Sbjct: 387 SGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 78.1 bits (193), Expect = 5e-17
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 17/185 (9%)

Query: 26  LRHVNISI-HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            +   +    +   L + G NG GK+T L++LAG   P+ G+             F   +
Sbjct: 14  FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73

Query: 85  LQL---NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP----------ALELMGLGRL 131
           +        S +  +  K   ++     + L+G     L             EL+ +  L
Sbjct: 74  IYNYFKELYSNELKIVHKIQYVEYAS--KFLKGTVNEILTKIDERGKKDEVKELLNMTNL 131

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV 191
             + A +LS G  +RL +A  L  +  +++ D+PS  LD      +   I E   K   V
Sbjct: 132 WNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE-LLKNKYV 190

Query: 192 IVATH 196
           IV  H
Sbjct: 191 IVVDH 195

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  100 bits (252), Expect = 4e-26
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 29/206 (14%)

Query: 13  LKNVS----CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           LKNV          +  L ++N+ + +G  +++ G NGSGK+T LR ++G   P +G I 
Sbjct: 4   LKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIF 61

Query: 69  WNGHDITQ-----SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPA 122
            NG ++ +         +  +     +          TV D V  +E L+G  +   L  
Sbjct: 62  INGMEVRKIRNYIRYSTNLPEAYEIGV----------TVNDIVYLYEELKGLDRDLFLEM 111

Query: 123 LELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           L+ + LG  + + K   LS GQ   ++ +  LA    I  LDEP   +D         I 
Sbjct: 112 LKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA---ARRHVIS 168

Query: 182 AEHRKKGGIVIVATHLPIQIEDAMNL 207
              ++ G   I+ TH   +++     
Sbjct: 169 RYIKEYGKEGILVTH---ELDMLNLY 191

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  101 bits (255), Expect = 3e-25
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 26/179 (14%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
            L      I  G  + + G NG GK+TF++MLAG  +P+ G+I W+            YK
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--------YK 352

Query: 85  LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA---LELMGLGRLAKEKARMLSM 141
            Q      +  V E  +        ++   K  ++      L+ +G+  L   +   LS 
Sbjct: 353 PQYIKADYEGTVYELLS--------KIDASKLNSNFYKTELLKPLGIIDLYDREVNELSG 404

Query: 142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDG----VRLLEYIIAEHRKKGGIVIVATH 196
           G+ +R+ +A  L  D  I+LLDEPS  LD +      R + +++ ++ K     +V  H
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK---TALVVEH 460

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 78.9 bits (195), Expect = 3e-17
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 9/194 (4%)

Query: 12  LLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS--AGEILW 69
           L ++          + +    + +G  + + G NG+GKST +++LAG   P+       W
Sbjct: 23  LEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82

Query: 70  NGHDITQSGI-FHQYKLQLNWLSLKDAVKEKFTVLDNVQWF----EVLEGKQ--GNSLPA 122
           +G      G     Y  +L    ++  VK ++  L          E+L+     G     
Sbjct: 83  DGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEV 142

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
           ++ + L  + + + + LS G+ +R+ +A  L  +   +  DEPS  LD          I 
Sbjct: 143 VKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202

Query: 183 EHRKKGGIVIVATH 196
              ++G  V+V  H
Sbjct: 203 RLSEEGKSVLVVEH 216

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 97.3 bits (243), Expect = 5e-24
 Identities = 60/218 (27%), Positives = 86/218 (39%), Gaps = 53/218 (24%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L + ++S       +L  +++S+  G  L + G +G GK+T LR LAGF +P +GEI 
Sbjct: 3   AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62

Query: 69  WNGHDITQSG------------IFHQYKLQLNWLSLKDAVKEKF---TVLDNVQWFEVLE 113
            +G  I                +  +  L              F   TV  N+ +     
Sbjct: 63  LSGKTIFSKNTNLPVRERRLGYLVQEGVL--------------FPHLTVYRNIAY----- 103

Query: 114 GKQGNSLP----------ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
           G                  LEL G+  LA      LS GQ++R  LAR LA D  + LLD
Sbjct: 104 GLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163

Query: 164 EPSVALDYDGVRLLEYIIAEHR---KKGGI--VIVATH 196
           EP  ALD    +L   I  +     +  G   V V +H
Sbjct: 164 EPFSALD---EQLRRQIREDMIAALRANGKSAVFV-SH 197

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score = 91.8 bits (229), Expect = 6e-23
 Identities = 48/161 (29%), Positives = 66/161 (40%), Gaps = 33/161 (20%)

Query: 28  HVNISIHDGGALV-LTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------SG 78
            +N+    G     L G  G+GKS FL ++AG  KP  GE+  NG DIT           
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF 74

Query: 79  IFHQYKLQLNWLSLKDAVKEKF---TVLDNVQWFEVLEGKQGNSLP-----ALELMGLGR 130
           +   Y L              F   +V  N+ +   L   +            E +G+  
Sbjct: 75  VPQDYAL--------------FPHLSVYRNIAY--GLRNVERVERDRRVREMAEKLGIAH 118

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
           L   K   LS G+R+R+ LAR L I   + LLDEP  A+D 
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 91.5 bits (228), Expect = 1e-22
 Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 41/207 (19%)

Query: 9   PRLLLKNVSCM-RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
             L ++N+    +    + + +N  ++ G  L + G NG GKST L +L G  +P  G+I
Sbjct: 3   KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------QWFE--------- 110
                     G   Q+           +    ++VLD V          F          
Sbjct: 63  EVYQ----SIGFVPQFF----------SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV 108

Query: 111 VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
            ++        AL+ + L  LAK +   LS GQR+ + +AR +A +  + LLDEP+ ALD
Sbjct: 109 AMQ--------ALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALD 160

Query: 171 YDG-VRLLEYIIAEHRKKGGIVIVATH 196
                 +L  +I   + +   V+  TH
Sbjct: 161 LANQDIVLSLLIDLAQSQNMTVVFTTH 187

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 52/197 (26%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ--------S 77
           L ++++ +  G   V+ G  G+GK+ FL ++AGF  P +G IL +G D+T         +
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75

Query: 78  GIFHQYKLQLNWLSLKDAVKEKF---TVLDNVQWF-----------EVLEGKQGNSLPAL 123
            ++  Y L              F    V  N++ F            VL+          
Sbjct: 76  FVYQNYSL--------------FPHMNVKKNLE-FGMRMKKIKDPKRVLD--------TA 112

Query: 124 ELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE 183
             + +  L       LS G+++R+ LAR L  +  I LLDEP  ALD    R  E     
Sbjct: 113 RDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP---RTQENAREM 169

Query: 184 ----HRKKGGIVIVATH 196
               H+K    V+  TH
Sbjct: 170 LSVLHKKNKLTVLHITH 186

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score = 91.5 bits (228), Expect = 2e-22
 Identities = 56/207 (27%), Positives = 89/207 (42%), Gaps = 35/207 (16%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           +    L+ +N++I  G    + G NG GKST  +   G  KPS+G IL++   I  S   
Sbjct: 19  DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK- 77

Query: 81  HQYKLQLNWLSLKDAVKEKFTVL---DNVQWFE--VLE----GKQGNSLP---------- 121
                      +    +    V    DN Q F   V +    G     LP          
Sbjct: 78  ----------GIMKLRESIGIVFQDPDN-QLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
           AL+  G+  L  +    LS GQ+KR+ +A +L ++  + +LDEP+  LD  GV  +  ++
Sbjct: 127 ALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186

Query: 182 AE-HRKKGGIVIVATHLPIQIEDAMNL 207
            E  ++ G  +I+ATH    I+     
Sbjct: 187 VEMQKELGITIIIATH---DIDIVPLY 210

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 91.1 bits (227), Expect = 6e-22
 Identities = 52/185 (28%), Positives = 72/185 (38%), Gaps = 49/185 (26%)

Query: 13  LKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
              V        + +R V+  I +G  + L G +GSGK+T LR++AG  +P+ G++   G
Sbjct: 17  FVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG 76

Query: 72  HDITQSG--------IFHQYKLQLNWLSLKDAVKEKF---TVLDNVQWF----------- 109
             +T           +F  Y L              F   TV DNV  F           
Sbjct: 77  KRVTDLPPQKRNVGLVFQNYAL--------------FQHMTVYDNVS-FGLREKRVPKDE 121

Query: 110 ---EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS 166
               V E         L  M L   A      LS GQ++R+ LAR LA    + L DEP 
Sbjct: 122 MDARVRE--------LLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173

Query: 167 VALDY 171
            A+D 
Sbjct: 174 AAIDT 178

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 86.1 bits (214), Expect = 1e-20
 Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 29/203 (14%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             + L++V+        L  ++  +  G  L L G NG+GKST L  +AG      G I 
Sbjct: 3   IVMQLQDVA----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 57

Query: 69  WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV-------QWFEVLEGKQGNSLP 121
           + G  +       +  L   +LS +        V   +          E+L         
Sbjct: 58  FAGQPLEAWSA-TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND------- 109

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW-------LLDEPSVALD-YDG 173
               + L          LS G+ +R++LA ++    P         LLDEP  +LD    
Sbjct: 110 VAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169

Query: 174 VRLLEYIIAEHRKKGGIVIVATH 196
             L + I++   ++G  +++++H
Sbjct: 170 SALDK-ILSALSQQGLAIVMSSH 191

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 84.5 bits (210), Expect = 5e-20
 Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 40/169 (23%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--------QS 77
           L  V+IS++ G   ++ G NGSGKST + ++ GF K   G + +   DIT          
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82

Query: 78  GI---FHQYKLQLNWLSLKDAVKEKFTVLDNV----------QWFEVLEGK--------Q 116
           GI   F   +       LK+      TVL+N+              +   K         
Sbjct: 83  GIVRTFQTPQP------LKEM-----TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV 131

Query: 117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP 165
             +   LE + L  L   KA  LS GQ K +++ R L  +  + ++DEP
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score = 84.2 bits (209), Expect = 7e-20
 Identities = 56/209 (26%), Positives = 100/209 (47%), Gaps = 46/209 (22%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT------ 75
            ++ L +V++ I++G  L++ G  GSGKST L+++AG  +P++G++L++G          
Sbjct: 19  EKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRR 78

Query: 76  QSGIFHQY-KLQL--------------NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSL 120
             GI  QY + Q               N+   +D V         V+             
Sbjct: 79  NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVP-------LVKK------------ 119

Query: 121 PALELMGLGRLA-KEKA-RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLE 178
            A+E +GL   + K++    LS G+++R+ +A ++  +  I +LDEP V LD +G   L 
Sbjct: 120 -AMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178

Query: 179 YIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
            I+ + +  G  VI+ +H    IE  +N 
Sbjct: 179 RIVEKWKTLGKTVILISH---DIETVINH 204

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score = 78.0 bits (193), Expect = 1e-17
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 35/197 (17%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
             L++VN++I +G  + + G +GSGKST L ++    KP+ GE+  +             
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78

Query: 79  ---------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS--------LP 121
                    +F Q+ L +  L          T L+NV+   + + +   S        L 
Sbjct: 79  KIRRDKIGFVFQQFNL-IPLL----------TALENVELPLIFKYRGAMSGEERRKRALE 127

Query: 122 ALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEY 179
            L++  L  R A  K   LS GQ++R+ +AR LA + PI L D+P+ ALD   G ++++ 
Sbjct: 128 CLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187

Query: 180 IIAEHRKKGGIVIVATH 196
           +   + + G  V+V TH
Sbjct: 188 LKKLNEEDGKTVVVVTH 204

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score = 74.8 bits (185), Expect = 1e-16
 Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 32/193 (16%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           +IL+ +++S+  G  + + G +GSGKST L +L     P+ G++   G ++  +      
Sbjct: 18  EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77

Query: 79  ---------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN-----SLPALE 124
                    +F  + L    +        + T L+NV    +  GK            L 
Sbjct: 78  LLRNRKLGFVFQFHYL----IP-------ELTALENVIVPMLKMGKPKKEAKERGEYLLS 126

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAE 183
            +GLG     K   LS G+++R+ +AR LA +  +   DEP+  LD  +  R+++ I  +
Sbjct: 127 ELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMD-IFLK 185

Query: 184 HRKKGGIVIVATH 196
             + G  +++ TH
Sbjct: 186 INEGGTSIVMVTH 198

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 76.2 bits (188), Expect = 2e-16
 Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 55/229 (24%)

Query: 10  RLLLKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           R+++KNVS +  +     L +VNI+I +G    + G +G+GK+TF+R++AG   PS GE+
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 68  LWNGHDITQSGIFHQYKLQLNWLSLKD----------AVKEKFTVLDNVQWF-------- 109
            ++   +  +G           +  +D          A+    T  +N+  F        
Sbjct: 63  YFDDRLVASNG--------KLIVPPEDRKIGMVFQTWALYPNLTAFENIA-FPLTNMKMS 113

Query: 110 ------EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
                  V E          +++ +  +     R LS  Q++R+ LAR L  D  + LLD
Sbjct: 114 KEEIRKRVEE--------VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD 165

Query: 164 EPSVALDYDGVRL-----LEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
           EP   LD    R+        +     + G  ++V +H     +    +
Sbjct: 166 EPFSNLD---ARMRDSARAL-VKEVQSRLGVTLLVVSH--DPAD-IFAI 207

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 73.4 bits (181), Expect = 7e-16
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 37/169 (21%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG----- 78
           ++L+ +N+ I +G  +V+ G +GSGKSTFLR L        GEI+ +G ++         
Sbjct: 38  EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97

Query: 79  -------IFHQYKLQLNWLSLKDAVKEKF---TVLDNV----QWFEVLEGKQGNSLPALE 124
                  +F ++ L              F   TVL+N+            ++  +  A+E
Sbjct: 98  VREEVGMVFQRFNL--------------FPHMTVLNNITLAPMKVRKWPREKAEAK-AME 142

Query: 125 LM---GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           L+   GL   A      LS GQ +R+ +AR LA++  I L DEP+ ALD
Sbjct: 143 LLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 75.1 bits (184), Expect = 8e-16
 Identities = 46/194 (23%), Positives = 64/194 (32%), Gaps = 30/194 (15%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG-----FSKPS 63
             L     S    A+ +L    + +       + G NG GKST +R +A      F    
Sbjct: 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQE 493

Query: 64  AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPAL 123
               ++  HDI                   D      +VLD V  FE   G +      L
Sbjct: 494 ECRTVYVEHDI-------------------DGTHSDTSVLDFV--FESGVGTKEAIKDKL 532

Query: 124 ELMGLGRLAKEKA-RMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
              G            LS G + +L LAR +  +  I LLDEP+  LD   V  L   + 
Sbjct: 533 IEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLN 592

Query: 183 EHRKKGGIVIVATH 196
                    I  +H
Sbjct: 593 TCG---ITSITISH 603

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 23/170 (13%), Positives = 53/170 (31%), Gaps = 8/170 (4%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ 82
           +  +  +N        + + G NG+GKST + +L G   P++GE+ +   +  +     Q
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV-YTHENC-RIAYIKQ 743

Query: 83  YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG 142
           +        L        T  + +QW       +     A   +               G
Sbjct: 744 HAFAHIESHLDK------TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEG 797

Query: 143 QRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
             +R+         +  +  +   +  +  G++   ++         I  
Sbjct: 798 TPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPR 847

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 18/119 (15%)

Query: 81  HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM-- 138
              K+       +     +F  L   +  E               +GL       +R+  
Sbjct: 853 SHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSM-----------LGLDPEIVSHSRIRG 901

Query: 139 LSMGQRKRLQLARLLAIDRP-IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
           LS GQ+ +L LA      RP + +LDEP+  LD D +  L   + E   +GG++I+ TH
Sbjct: 902 LSGGQKVKLVLAAGT-WQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIII-TH 956

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 47/187 (25%), Positives = 76/187 (40%), Gaps = 45/187 (24%)

Query: 13   LKNVS---CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
               V      R +  +L+ +++ +  G  L L G++G GKST +++L  F  P AG +  
Sbjct: 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092

Query: 70   NGHDITQSGIFHQYKLQLNWL----------------SLKDAV---KEKFTVLDNVQWFE 110
            +G +I         +L + WL                S+ + +        V       E
Sbjct: 1093 DGKEIK--------QLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYE----E 1140

Query: 111  VLE-GKQGN------SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD 163
            ++   K+ N      SLP            +K   LS GQ++R+ +AR L     I LLD
Sbjct: 1141 IVRAAKEANIHQFIDSLPD----KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLD 1196

Query: 164  EPSVALD 170
            E + ALD
Sbjct: 1197 EATSALD 1203

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score = 69.7 bits (171), Expect = 5e-14
 Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 45/186 (24%)

Query: 13  LKNVSCM---RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            KN+      R   QIL+ +N+ +  G  + L G +G GKST ++++     P  G +  
Sbjct: 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSI 449

Query: 70  NGHDITQSGIFHQYKLQLNWL-----------SLKDAVKEKFTVLDNVQW-------FEV 111
           +G DI          + + +L            L        T+ +N+++        E+
Sbjct: 450 DGQDIR--------TINVRYLREIIGVVSQEPVLFAT-----TIAENIRYGREDVTMDEI 496

Query: 112 LEG-KQGN------SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164
            +  K+ N       LP         L  E+   LS GQ++R+ +AR L  +  I LLDE
Sbjct: 497 EKAVKEANAYDFIMKLP----HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDE 552

Query: 165 PSVALD 170
            + ALD
Sbjct: 553 ATSALD 558

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 43/180 (23%)

Query: 22  AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH 81
             ++L+ V++    G  + + G++GSGKSTFLR +    KPS G I+ NG +I       
Sbjct: 18  GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77

Query: 82  QYKLQLNWLSLKDAVKEK-------------FTVLDNVQWFEVLEG-------------K 115
                 +   L   ++ +              TVL+N     V+E              +
Sbjct: 78  GQLKVADKNQL-RLLRTRLTMVFQHFNLWSHMTVLEN-----VMEAPIQVLGLSKHDARE 131

Query: 116 QGNSLPALELMGLGRLAKEKAR-----MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           +      L  +G+     E+A+      LS GQ++R+ +AR LA++  + L DEP+ ALD
Sbjct: 132 RALKY--LAKVGID----ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 29/163 (17%)

Query: 26  LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG------- 78
           L +V++ +  G    + G +G+GKST +R +    +P+ G +L +G ++T          
Sbjct: 44  LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103

Query: 79  ------IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA-----LELMG 127
                 IF  +    N LS +       TV  NV     L+    + +       L L+G
Sbjct: 104 RRQIGMIFQHF----NLLSSR-------TVFGNVALPLELDNTPKDEVKRRVTELLSLVG 152

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           LG         LS GQ++R+ +AR LA +  + L D+ + ALD
Sbjct: 153 LGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score = 68.3 bits (168), Expect = 4e-14
 Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 58/221 (26%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           ++  IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +GHD+      
Sbjct: 20  DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL---- 75

Query: 81  HQYKLQLNWLSLKDAV--KEKF----TVLDNVQWF-------EVLE-GKQGN------SL 120
                  NWL  +  V  ++      +++DN+          +V+   K          L
Sbjct: 76  ----ADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRL---- 176
                 G   +  E+   LS GQR+R+ +AR L  +  I + DE + ALDY+   +    
Sbjct: 132 R----EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187

Query: 177 LE--------YIIAEHR-------------KKGGIVIVATH 196
           +          IIA HR             +KG IV    H
Sbjct: 188 MHKICKGRTVIIIA-HRLSTVKNADRIIVMEKGKIVEQGKH 227

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 67.1 bits (165), Expect = 9e-14
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 35/181 (19%)

Query: 9   PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
             L ++++     A   ++ +++ +  G  + L G NG+GK+T L  +AG  +   G+I+
Sbjct: 5   IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64

Query: 69  WNGHDIT--------QSGIFHQYKLQLNWLSLKDAVKE------KFTVLDNVQWFEVLEG 114
           +NG DIT        + GI                V E      + TV +N+        
Sbjct: 65  FNGQDITNKPAHVINRMGIAL--------------VPEGRRIFPELTVYENLMMGAYNRK 110

Query: 115 KQGNSLPALELM-----GLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-IWLLDEPSVA 168
            +      LE +      L    K+    LS G+++ L + R L + RP + ++DEPS+ 
Sbjct: 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL-MSRPKLLMMDEPSLG 169

Query: 169 L 169
           L
Sbjct: 170 L 170

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 36/182 (19%)

Query: 13  LKNVSC---MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            ++VS         Q+L+ +  +++ G    L G NGSGKST   +L    +P+ G++L 
Sbjct: 19  FQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78

Query: 70  NGHDITQSGIFHQYKLQLNWLSLK------------DAVKE--KFTVLDNVQWFEVLE-G 114
           +G  + Q           ++L  +             + +E   + +       E+    
Sbjct: 79  DGEPLVQ--------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVA 130

Query: 115 KQGN------SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA 168
            +          P     G      E    LS GQR+ + LAR L     + +LD  + A
Sbjct: 131 MESGAHDFISGFP----QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186

Query: 169 LD 170
           LD
Sbjct: 187 LD 188

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 46/180 (25%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            + L+N+         L ++N+ I DG  + L G +GSGKST L  +AG  KP++G+I +
Sbjct: 3   EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62

Query: 70  NGHDITQS-----GI---FHQY--------------KLQLNWLSLKDAVKEKFTVLDNVQ 107
           +  D+T+       +   F  +               L+L     ++ + +K      V+
Sbjct: 63  DEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAP-REEIDKK------VR 115

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEP 165
                           +++ + +L       LS GQ++R+ +AR  A+ +   + LLDEP
Sbjct: 116 E-------------VAKMLHIDKLLNRYPWQLSGGQQQRVAIAR--ALVKEPEVLLLDEP 160

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 43/180 (23%), Positives = 72/180 (40%), Gaps = 46/180 (25%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            + + N+       + +  V+  + DG  + L G +G GK+T L MLAG  KP++GEI +
Sbjct: 3   SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62

Query: 70  NGHDITQS-----GI---FHQY--------------KLQLNWLSLKDAVKEKFTVLDNVQ 107
           +   +         +   F  Y               L+   +S KD V+++      V 
Sbjct: 63  DDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS-KDEVEKR------VV 115

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEP 165
                             + +  L   K   LS GQ++R+ LAR  A+ +   + L DEP
Sbjct: 116 E-------------IARKLLIDNLLDRKPTQLSGGQQQRVALAR--ALVKQPKVLLFDEP 160

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 52/186 (27%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            + L +V  +      +R +++ + DG  ++L G +G GK+T LRM+AG  +PS G+I  
Sbjct: 3   GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKD----------AVKEKFTVLDN-------------- 105
               +           +  ++  KD          A+    TV DN              
Sbjct: 63  GDKLVAD-------PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQE 115

Query: 106 ----VQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PI 159
               V+                EL+GL  L   K R LS GQR+R+ L R  AI R   +
Sbjct: 116 IDQRVRE-------------VAELLGLTELLNRKPRELSGGQRQRVALGR--AIVRKPQV 160

Query: 160 WLLDEP 165
           +L+DEP
Sbjct: 161 FLMDEP 166

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 46/180 (25%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            + L+N++        +  +N++I DG  LVL G +G GK+T LRM+AG  +P+ G I +
Sbjct: 11  EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70

Query: 70  NGHDITQS-----GI---FHQY--------------KLQLNWLSLKDAVKEKFTVLDNVQ 107
              D+T        I   F  Y               L++     KD + ++      V+
Sbjct: 71  GDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-KDEIDKR------VR 123

Query: 108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEP 165
           W             A EL+ +  L       LS GQR+R+ +AR  AI     + L+DEP
Sbjct: 124 W-------------AAELLQIEELLNRYPAQLSGGQRQRVAVAR--AIVVEPDVLLMDEP 168

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score = 63.6 bits (156), Expect = 2e-12
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 37/173 (21%)

Query: 21  NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           +++QILR ++        +   G +G GKST   +L  F +P+AGEI  +G  I      
Sbjct: 13  DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDN---- 68

Query: 81  HQYKLQLNWLSLKDAV--KEKF----TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK- 133
               + L     +     ++      T+ +N+ +     G +G+     +L  +  LA  
Sbjct: 69  ----ISLENWRSQIGFVSQDSAIMAGTIRENLTY-----GLEGDYTDE-DLWQVLDLAFA 118

Query: 134 ----------------EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                           E+   +S GQR+RL +AR    +  I +LDE + +LD
Sbjct: 119 RSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLD 171

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 62.9 bits (154), Expect = 4e-12
 Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----AGE 66
           L ++++    + + IL+ VN+ +  G    L G NG+GKST  ++LAG   P      GE
Sbjct: 4   LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGE 61

Query: 67  ILWNGHDIT--------QSGIF--HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ 116
           IL +G +I         + G+F   QY +++  +++ + ++              L+ K 
Sbjct: 62  ILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLR------------LALQAKL 109

Query: 117 GNSLPALELMGLGRLAKEKARMLSM---------------GQRKR---LQLARL---LAI 155
           G  +   E        K+   +L                 G++KR   LQL  L    A+
Sbjct: 110 GREVGVAEFW---TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAV 166

Query: 156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
                 LDE    LD D ++++   +   R      +V TH
Sbjct: 167 ------LDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 54/225 (24%), Positives = 85/225 (37%), Gaps = 62/225 (27%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS----AGE 66
           L +K++      + ILR +++ +H G    + G NGSGKST    LAG  +       G 
Sbjct: 21  LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGT 78

Query: 67  ILWNGHDIT--------QSGIFH--QYKLQL----NWLSLKDAVKEKFTVLDNVQWFEVL 112
           + + G D+           GIF   QY +++    N   L+ A+                
Sbjct: 79  VEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAV------------- 125

Query: 113 EGKQGNSLPALELMGLGRLAKEKARMLSM---------------GQRKR---LQLARL-- 152
             +       L+      L +EK  +L M               G++KR   LQ+A L  
Sbjct: 126 --RSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEP 183

Query: 153 -LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH 196
            L I      LDE    LD D ++++   +   R      I+ TH
Sbjct: 184 ELCI------LDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 44/174 (25%)

Query: 23  QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---TQS-- 77
           ++ L+ V+ ++  G  L L G +G+GKST LR+L  F   S+G I  +G DI   TQ+  
Sbjct: 67  RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASL 126

Query: 78  ----GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK 133
               G+  Q           D V    T+ DN+++     G+        E+    + A 
Sbjct: 127 RSHIGVVPQ-----------DTVLFNDTIADNIRY-----GRVTAGND--EVEAAAQAAG 168

Query: 134 -----------------EKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                            E+   LS G+++R+ +AR +     I LLDE + ALD
Sbjct: 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALD 222

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 43/189 (22%), Positives = 63/189 (33%), Gaps = 52/189 (27%)

Query: 13  LKNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           +K+++  +       IL +++ SI  G  + L G  GSGKST L           GEI  
Sbjct: 22  VKDLT-AKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQI 79

Query: 70  NGHDITQSGI---------------------------FHQYKLQLNWLSLKDAVKEKFTV 102
           +G       +                              +  Q  W            V
Sbjct: 80  DGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIW-----------KV 128

Query: 103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL 162
            D V    V+E   G          L  +  +   +LS G ++ + LAR +     I LL
Sbjct: 129 ADEVGLRSVIEQFPG---------KLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 179

Query: 163 DEPSVALDY 171
           DEPS  LD 
Sbjct: 180 DEPSAHLDP 188

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 35/170 (20%)

Query: 23  QQILRHVNISIHDGG--ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
              LR++N+ I  G   ALV  G +GSGKST   ++  F     G IL +GHD+      
Sbjct: 356 VPALRNINLKIPAGKTVALV--GRSGSGKSTIASLITRFYDIDEGHILMDGHDL------ 407

Query: 81  HQYKL-----------QLNWLSLKDAVKE--KFTVLDNVQWFEVLEG-KQGN------SL 120
            +Y L           Q   L   D V     +   +     ++ E  +          +
Sbjct: 408 REYTLASLRNQVALVSQNVHL-FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM 466

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                 GL  +  E   +LS GQR+R+ +AR L  D PI +LDE + ALD
Sbjct: 467 DN----GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score = 59.9 bits (146), Expect = 9e-11
 Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 35/170 (20%)

Query: 23  QQILRHVNISIHDGG--ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF 80
           +  L HV+ SI  G   ALV  G +GSGKST   +   F    +G I  +GHD+      
Sbjct: 356 KPALSHVSFSIPQGKTVALV--GRSGSGKSTIANLFTRFYDVDSGSICLDGHDV------ 407

Query: 81  HQYKL-----------QLNWLSLKDAVKE--KFTVLDNVQWFEVLEG-KQGN------SL 120
             YKL           Q   L   D +     +         ++ +  +Q +      ++
Sbjct: 408 RDYKLTNLRRHFALVSQNVHL-FNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
           P     GL  +  E    LS GQR+R+ +AR L  D P+ +LDE + ALD
Sbjct: 467 PQ----GLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 43/186 (23%), Positives = 72/186 (38%), Gaps = 48/186 (25%)

Query: 14  KNVS---CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            +V+     +   + L+ +N  I  G    L G  GSGKST  ++L  F     G+I   
Sbjct: 21  SDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDIKIG 79

Query: 71  GHDI---TQS------GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
           G ++    ++      GI  Q           D +    T+  N+ +     GK   +  
Sbjct: 80  GKNVNKYNRNSIRSIIGIVPQ-----------DTILFNETIKYNILY-----GKLDATDE 123

Query: 122 ALELMGLGRLAK-----------------EKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164
             E++   + A+                  K   LS G+R+R+ +AR L  D  I + DE
Sbjct: 124 --EVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDE 181

Query: 165 PSVALD 170
            + +LD
Sbjct: 182 ATSSLD 187

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 56.2 bits (136), Expect = 9e-10
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 25/181 (13%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK 84
           +L+ +N  I  G  L + G+ G+GK++ L M+ G  +PS G+I  +G     S     + 
Sbjct: 53  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RIS-----FC 104

Query: 85  LQLNWL---SLKDAVKEKFTVLDNVQWFEVLE----GKQGNSLPALELMGLGRLAKEKAR 137
            Q +W+   ++K+ +       D  ++  V++     +  +     + + LG    E   
Sbjct: 105 SQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLG----EGGI 158

Query: 138 MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEH-RKKGGIVIVAT 195
            LS GQR R+ LAR +  D  ++LLD P   LD      + E  + +    K    I+ T
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANK--TRILVT 216

Query: 196 H 196
            
Sbjct: 217 S 217

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score = 56.4 bits (137), Expect = 1e-09
 Identities = 56/177 (31%), Positives = 81/177 (45%), Gaps = 46/177 (25%)

Query: 21  NAQQILRHVNISIHDGG--ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---- 74
           N   IL+ +N+SI  G   A V  G +G GKST + ++  F   ++G+IL +GH+I    
Sbjct: 352 NEAPILKDINLSIEKGETVAFV--GMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409

Query: 75  -----TQSGIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQWF-------EVLE-GKQGN- 118
                 Q G+      Q N L         F  TV +N+          EV+E  K  N 
Sbjct: 410 TGSLRNQIGLV----QQDNIL---------FSDTVKENILLGRPTATDEEVVEAAKMANA 456

Query: 119 -----SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                +LP     G      E+   LS GQ++RL +AR+   + PI +LDE + ALD
Sbjct: 457 HDFIMNLP----QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 509

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 38/201 (18%)

Query: 13  LKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           ++NV+         +L+ +N  I  G  L + G+ G+GK++ L M+ G  +PS G+I  +
Sbjct: 9   MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 68

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV--------QWFE-VLE----GKQG 117
           G     S     +  Q +W+          T+ +N+          +  V++     +  
Sbjct: 69  G---RIS-----FCSQFSWI-------MPGTIKENIIFGVSYDEYRYRSVIKACQLEEDI 113

Query: 118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRL 176
           +     + + LG    E    LS GQR R+ LAR +  D  ++LLD P   LD      +
Sbjct: 114 SKFAEKDNIVLG----EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169

Query: 177 LEYIIAEH-RKKGGIVIVATH 196
            E  + +    K    I+ T 
Sbjct: 170 FESCVCKLMANK--TRILVTS 188

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 43/179 (24%), Positives = 76/179 (42%), Gaps = 46/179 (25%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           + L+NV+       + + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++   
Sbjct: 4   VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63

Query: 71  GHDIT-----QSGI---FHQY--------------KLQLNWLSLKDAVKEKFTVLDNVQW 108
              +      + G+   F  Y               L+L     K+ + ++         
Sbjct: 64  EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK-KEVINQR--------- 113

Query: 109 FEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEP 165
             V +          E++ L  L   K + LS GQR+R+ + R   +     ++LLDEP
Sbjct: 114 --VNQ--------VAEVLQLAHLLDRKPKALSGGQRQRVAIGR--TLVAEPSVFLLDEP 160

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 71/258 (27%)

Query: 3   LRKPPLPRLLLKNVSCMRNAQQILR-HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK 61
             K  + RL  +    +R A   LR   N+ I         G  GSGK+           
Sbjct: 126 FAKYNVSRL--QPYLKLRQALLELRPAKNVLID--------GVLGSGKTWV--------- 166

Query: 62  PSAGEILWNGHDITQS---GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGN 118
             A ++    + +       IF        WL+LK+      TVL+ +Q           
Sbjct: 167 --ALDVC-LSYKVQCKMDFKIF--------WLNLKN-CNSPETVLEMLQKLLYQIDPNWT 214

Query: 119 SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID--RPIWLLD------------- 163
           S          R+   +A +  + + K  +   LL +   +     +             
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 164 EPSVALDYDGVRLLEYIIAEHRKKG-----GIVIVATHLPIQIEDAMNLRLPPR----FP 214
              V  D+       +I  +H            ++  +L  + +D     LP       P
Sbjct: 274 FKQVT-DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPREVLTTNP 327

Query: 215 RRMTLV-----DMLDRAD 227
           RR++++     D L   D
Sbjct: 328 RRLSIIAESIRDGLATWD 345

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 38/192 (19%), Positives = 73/192 (38%), Gaps = 36/192 (18%)

Query: 25  ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI---TQSGIFH 81
           +L  VN S+  G  + + G  GSGKST + ++     P  G +  +  D+       +  
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417

Query: 82  Q--YKLQLNWLSLKDAVKEKF--TVLDNVQWFEVLEGKQGNSLP----ALEL-------- 125
                 Q   L         F  T+ +N++W     G++  +      A ++        
Sbjct: 418 HISAVPQETVL---------FSGTIKENLKW-----GREDATDDEIVEAAKIAQIHDFII 463

Query: 126 ---MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
               G     +   R  S GQ++RL +AR L     + +LD+ + ++D    + +   + 
Sbjct: 464 SLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523

Query: 183 EHRKKGGIVIVA 194
            + K     I+ 
Sbjct: 524 RYTKGCTTFIIT 535

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 51.8 bits (125), Expect = 2e-08
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 28/189 (14%)

Query: 20  RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI 79
           R+    L  +  SI +G  + + G  G GKS+ L  L        G +   G   + +  
Sbjct: 15  RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVA-- 69

Query: 80  FHQYKLQLNWL---SLKDAV---KEKFTVLDNVQWFEVLE----GKQGNSLPALELMGLG 129
              Y  Q  W+   SL++ +    +    L+   +  V++          LP+ +   +G
Sbjct: 70  ---YVPQQAWIQNDSLRENILFGCQ----LEEPYYRSVIQACALLPDLEILPSGDRTEIG 122

Query: 130 RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD-YDGVRLLEYIIAEHRK-K 187
               EK   LS GQ++R+ LAR +  +  I+L D+P  A+D + G  + E +I      K
Sbjct: 123 ----EKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLK 178

Query: 188 GGIVIVATH 196
               I+ TH
Sbjct: 179 NKTRILVTH 187

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 135 KARMLSMGQRKRLQLARLLAI------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKG 188
               LS G+R  L LA  LA+      +  + +LDEP+  LD +  R L  I+  + KK 
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 304

Query: 189 GIVIVATHLP 198
             VI+ +H  
Sbjct: 305 PQVILVSHDE 314

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAI------DRPIWLLDEPSVALDYDGVRL 176
           +   G  R        LS G+R  L LA  LA+      +  + +LDEP+  LD +  R 
Sbjct: 46  VVWEGKER----PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRK 101

Query: 177 LEYIIAEHRKKGGIVIVATH 196
           L  I+  + KK   VI+ +H
Sbjct: 102 LITIMERYLKKIPQVILVSH 121

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 46/169 (27%), Positives = 67/169 (39%), Gaps = 46/169 (27%)

Query: 23  QQILRHVNISIHDGG--ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT----- 75
           + +L+ +   I  G   ALV  G  GSGK+T + +L  F     G+IL +G DI      
Sbjct: 368 KPVLKDITFHIKPGQKVALV--GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425

Query: 76  ----QSGIFHQYKLQLNWLSLKDAVKEKF--TVLDNVQW-------FEVLEG-KQGN--- 118
                 GI     LQ   L         F  TV +N+++        E+ E  K  +   
Sbjct: 426 SLRSSIGIV----LQDTIL---------FSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472

Query: 119 ---SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE 164
               LP     G   +  +    LS GQR+ L + R    +  I +LDE
Sbjct: 473 FIKHLPE----GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDE 517

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ghi_A	260	Transport protein; multidrug resistance protein, M	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	100.0
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	100.0
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	100.0
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	100.0
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	100.0
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	100.0
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	100.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	100.0
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	100.0
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	100.0
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	100.0
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	100.0
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	100.0
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	100.0
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	100.0
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	100.0
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	100.0
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.97
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.97
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.97
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.95
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.95
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.94
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.94
2og2_A	359	Putative signal recognition particle receptor; nuc	99.94
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.94
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.93
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.92
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.92
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.92
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.92
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.91
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.91
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.9
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.9
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	99.9
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.9
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.89
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.89
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.89
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.89
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.88
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.88
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.88
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	99.87
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.87
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.86
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.86
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.85
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.85
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.84
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.83
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.83
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.82
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.82
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.82
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.82
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.81
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.81
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.81
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.78
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.78
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.77
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.76
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.76
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.74
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.73
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.72
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	99.71
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.7
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.7
3kta_B	173	Chromosome segregation protein SMC; structural mai	99.7
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.69
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.69
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.68
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.66
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.66
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.66
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.65
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	99.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.62
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.6
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.59
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.56
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.56
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	99.56
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	99.54
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.54
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.51
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.49
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.49
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.47
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.46
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	99.44
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.43
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.35
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.33
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.31
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.3
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	99.29
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.28
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	99.28
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	99.27
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.24
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.24
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.18
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.06
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.05
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	99.03
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.98
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.97
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.95
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.94
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	98.9
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.85
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.83
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.81
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.81
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.77
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.72
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.67
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.66
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.66
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.65
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.64
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.63
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.62
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.58
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.55
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.54
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.52
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.51
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.48
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.48
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	98.46
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.45
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.45
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.44
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.43
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.41
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.37
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.37
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.35
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.32
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.32
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.29
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.21
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.2
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.2
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.19
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.18
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.18
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.15
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.15
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.1
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	98.07
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.05
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	98.05
3ice_A	422	Transcription termination factor RHO; transcriptio	98.05
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.04
3bos_A	242	Putative DNA replication factor; P-loop containing	98.04
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.02
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.99
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.95
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.93
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.92
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.92
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.91
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.9
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.89
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.86
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.85
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.84
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.82
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.82
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.72
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.72
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.69
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.65
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.64
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.64
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	97.64
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.62
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.62
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.61
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.57
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.57
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.57
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.5
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.5
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.48
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.45
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.4
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.39
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.36
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.34
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.33
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.33
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.32
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.32
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.32
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.32
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.31
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.3
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.27
3io5_A	333	Recombination and repair protein; storage dimer, i	97.27
1via_A	175	Shikimate kinase; structural genomics, transferase	97.26
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.25
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.24
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.24
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.24
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.2
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.18
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.18
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.17
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.16
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.16
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.14
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.14
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.13
3co5_A	143	Putative two-component system transcriptional RES	97.08
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.07
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.06
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.06
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.05
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.04
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.04
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.03
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.0
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.98
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.96
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.96
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.94
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.93
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.92
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.91
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.9
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.89
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.88
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.88
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.87
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.87
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.87
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.86
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.85
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.85
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.84
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.84
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.83
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.82
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.82
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.82
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.81
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.81
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.8
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.8
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.79
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.79
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.77
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.77
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.77
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.76
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.76
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.76
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.75
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.74
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.74
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.74
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.73
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.7
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.67
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.67
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.67
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.67
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.67
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.67
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.66
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.66
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.65
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.65
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.64
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.63
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.63
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.62
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.62
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.61
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	96.61
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.6
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.6
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.6
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.6
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.59
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.59
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.58
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.58
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.57
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.56
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.55
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.54
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.54
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	96.54
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.54
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.53
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.53
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.53
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.53
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.52
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.51
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.49
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.49
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.49
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.48
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.48
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.48
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	96.48
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.48
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.46
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.46
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.46
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.46
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.45
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.44
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.44
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.44
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.44
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.43
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.42
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.41
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.41
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.41
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.41
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.41
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.4
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.4
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.4
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.4
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.39
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.38
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.38
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.38
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.38
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.38
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.37
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.37
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.36
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.36
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.35
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.35
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.35
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.34
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.33
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.33
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.33
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.33
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.32
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.32
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.31
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.3
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.3
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.27
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.27
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	96.26
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.26
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.24
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.23
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.23
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.22
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.22
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.22
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.17
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.17
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.17
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.16
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.12
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.12
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.11
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.09
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.08
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.08
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.07
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.04
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.02
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.02
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.02
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.98
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.89
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.88
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.84
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.81
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.79
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.72
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.72
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.71
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.67
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.64
3pvs_A	447	Replication-associated recombination protein A; ma	95.63
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.62
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.57
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.56
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.45
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.44
2qgz_A	308	Helicase loader, putative primosome component; str	95.42
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.41
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.41
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.38
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.37
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.36
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.36

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.3e-56  Score=376.08  Aligned_cols=197  Identities=23%  Similarity=0.332  Sum_probs=174.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhh--hh-hh
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFH--QY-KL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~--~~-~~   85 (229)
                      ++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.......  .. +.
T Consensus         3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   82 (224)
T 2pcj_A            3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR   82 (224)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred             cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence            3799999999999999999999999999999999999999999999999999999999999999986543211  12 25


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .++|++|++.+++.+||.||+.++.....     ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  162 (224)
T 2pcj_A           83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILL  162 (224)
T ss_dssp             HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEE
T ss_pred             cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            79999999999999999999988654322     1234567899999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.+++.+.+++++++++|.|||++|||++.+ ..+|
T Consensus       163 lLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d  207 (224)
T 2pcj_A          163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTH  207 (224)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSS
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCC
Confidence            99999999999999999999999977799999999999876 5554

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=2.1e-56  Score=398.19  Aligned_cols=200  Identities=24%  Similarity=0.320  Sum_probs=178.0

Q ss_pred             CCCcEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--
Q 027067            7 PLPRLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--   80 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--   80 (229)
                      ..++|+++||+++|++    .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+..  
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~  100 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL  100 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence            3468999999999953    5799999999999999999999999999999999999999999999999999765432  


Q ss_pred             hhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           81 HQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ...+++++|++|++.+++.+||+||+.++....+.     ..++.++++.+||.+..++++.+|||||||||+|||||+.
T Consensus       101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~  180 (366)
T 3tui_C          101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS  180 (366)
T ss_dssp             HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred             HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            22456899999999999999999999987654322     2346788999999999999999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.+++.+.++++++++ .|.|||+||||++.+...+|
T Consensus       181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD  232 (366)
T 3tui_C          181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD  232 (366)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS
T ss_pred             CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999999999999865 49999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=7.4e-57  Score=384.84  Aligned_cols=198  Identities=25%  Similarity=0.331  Sum_probs=176.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus         6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   85 (257)
T 1g6h_A            6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   85 (257)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999865433233456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHh--cC------------c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVL--EG------------K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~--~~------------~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      |++|++.+++.+||.||+.++...  .+            .    ..++.++++.+++.+..++++.+|||||||||+||
T Consensus        86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA  165 (257)
T 1g6h_A           86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  165 (257)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence            999999999999999999875322  11            1    12356789999999999999999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||+|||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus       166 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d  221 (257)
T 1g6h_A          166 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID  221 (257)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            99999999999999999999999999999999987779999999999999888765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.5e-56  Score=382.83  Aligned_cols=198  Identities=25%  Similarity=0.363  Sum_probs=175.8

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC-Cchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ-SGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~~~~   87 (229)
                      ++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.. .......++.+
T Consensus        23 ~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i  102 (263)
T 2olj_A           23 QMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV  102 (263)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred             heEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence            47999999999999999999999999999999999999999999999999999999999999999851 11112345679


Q ss_pred             eEeecccccCCCCCHHHhHHHHH-HhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFE-VLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~-~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      +|++|++.+++.+||.||+.++. ...+.     ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++||
T Consensus       103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lll  182 (263)
T 2olj_A          103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIML  182 (263)
T ss_dssp             EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence            99999999999999999998853 22221     2345678999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus       183 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d  227 (263)
T 2olj_A          183 FDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD  227 (263)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC
Confidence            999999999999999999999997779999999999999988765

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6.2e-56  Score=379.05  Aligned_cols=196  Identities=23%  Similarity=0.403  Sum_probs=177.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++|+++||+++|+++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...  ....++.++
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~--~~~~~~~i~   91 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHEVRKLIS   91 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHHHHTTEE
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcc--HHHHhhcEE
Confidence            679999999999999999999999999999999999999999999999999999999999999998652  133456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+||.||+.++......     ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD  171 (256)
T 1vpl_A           92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD  171 (256)
T ss_dssp             EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999999999999999999886533221     134567899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus       172 EPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d  214 (256)
T 1vpl_A          172 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD  214 (256)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred             CCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCC
Confidence            9999999999999999999998779999999999999988665

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.3e-56  Score=377.30  Aligned_cols=198  Identities=20%  Similarity=0.298  Sum_probs=174.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++||+++|+++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.........+..++
T Consensus         5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~   84 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA   84 (240)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred             ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999865443222344699


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc----cccHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK----QGNSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+||.||+.++......    ...+.++++.+ ++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus        85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD  164 (240)
T 1ji0_A           85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD  164 (240)
T ss_dssp             EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence            999999999999999999875311111    12345678888 4888889999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+.+++.+.+++++++++|+|||++|||++++...+|
T Consensus       165 EPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d  207 (240)
T 1ji0_A          165 EPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH  207 (240)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999987779999999999999888775

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.8e-56  Score=382.30  Aligned_cols=198  Identities=27%  Similarity=0.383  Sum_probs=176.0

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC----------Cc
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ----------SG   78 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~----------~~   78 (229)
                      ++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..          ..
T Consensus         5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~   84 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD   84 (262)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence            47999999999999999999999999999999999999999999999999999999999999999851          11


Q ss_pred             h--hhhhhhcceEeecccccCCCCCHHHhHHHHH-HhcCc-----cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHH
Q 027067           79 I--FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE-VLEGK-----QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        79 ~--~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~-~~~~~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~l  149 (229)
                      .  ....++.++|++|++.+++.+||.||+.++. ...+.     ..++.++++.+++.+. .++++.+|||||||||+|
T Consensus        85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l  164 (262)
T 1b0u_A           85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI  164 (262)
T ss_dssp             HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred             hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence            1  1224567999999999999999999998853 22211     2345678999999998 999999999999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+.+|++|||||||+|||+.+++.+.+++++++++|.|||+||||++++...+|
T Consensus       165 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d  221 (262)
T 1b0u_A          165 ARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS  221 (262)
T ss_dssp             HHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS
T ss_pred             HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999999999987779999999999999988765

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=7.2e-56  Score=374.18  Aligned_cols=196  Identities=27%  Similarity=0.351  Sum_probs=169.9

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---   82 (229)
                      +|+++||+++|++    +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........   
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   80 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence            5899999999963    469999999999999999999999999999999999999999999999999876543221   


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhc---Cc-----cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE---GK-----QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral  153 (229)
                      .+..++|++|++.+++.+||.||+.+.....   ..     ..++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus        81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral  160 (235)
T 3tif_A           81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (235)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence            2346999999999999999999998864332   11     1235678899999875 4999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++++++++ |+|||+||||++.+ ..+|
T Consensus       161 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d  213 (235)
T 3tif_A          161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE  213 (235)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSS
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC
Confidence            9999999999999999999999999999998655 99999999999854 4444

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=6.9e-56  Score=382.34  Aligned_cols=198  Identities=25%  Similarity=0.344  Sum_probs=173.4

Q ss_pred             CcEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~   86 (229)
                      ++|+++||+++|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... .....++.
T Consensus         6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~   85 (275)
T 3gfo_A            6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES   85 (275)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred             cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence            58999999999975 56999999999999999999999999999999999999999999999999985321 11235678


Q ss_pred             ceEeecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           87 LNWLSLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        87 ~~~~~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ++|++|++. .+..+||+||+.++....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus        86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lL  165 (275)
T 3gfo_A           86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL  165 (275)
T ss_dssp             EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            999999863 34478999999987543321     234667899999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+|||+.+++.+.+++++++ ++|.|||+||||++++...+|
T Consensus       166 lLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d  212 (275)
T 3gfo_A          166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD  212 (275)
T ss_dssp             EEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCS
T ss_pred             EEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCC
Confidence            9999999999999999999999986 569999999999999988765

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=9.9e-56  Score=395.88  Aligned_cols=194  Identities=26%  Similarity=0.396  Sum_probs=177.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+|+|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   ..+.++|
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~---~~r~ig~   79 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---AERGVGM   79 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG---GGSCEEE
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH---HHCCEEE
Confidence            5999999999999999999999999999999999999999999999999999999999999999876543   3467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||.||+.++....+.     ..++.++++.+++.++.+++|.+|||||||||+|||||+.+|++|||||
T Consensus        80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDE  159 (381)
T 3rlf_A           80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE  159 (381)
T ss_dssp             ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred             EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999987654332     2346788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus       160 Pts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD  202 (381)
T 3rlf_A          160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD  202 (381)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence            99999999999999999998654 9999999999999988764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=1.4e-55  Score=378.87  Aligned_cols=199  Identities=24%  Similarity=0.288  Sum_probs=178.2

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      +.++|+++||++.|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...++.
T Consensus         8 ~~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~-~~~~~~   86 (266)
T 4g1u_C            8 PVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP-KALART   86 (266)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH-HHHHHH
T ss_pred             CcceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH-HHHhhe
Confidence            3468999999999999999999999999999999999999999999999999999999999999999976543 234567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc------CC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI------DR  157 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~------~p  157 (229)
                      ++|++|++.+++.+||.||+.++.....   ...++.++++.+++.+..++++.+|||||||||+|||||+.      +|
T Consensus        87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p  166 (266)
T 4g1u_C           87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTP  166 (266)
T ss_dssp             EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCC
T ss_pred             EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence            8999999998889999999988643221   12346788999999999999999999999999999999999      99


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||+|||+.+++.+.+++++++++ ++|||+||||++++...+|
T Consensus       167 ~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d  216 (266)
T 4g1u_C          167 RWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYAD  216 (266)
T ss_dssp             EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCS
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCC
Confidence            999999999999999999999999998765 5799999999999988765

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=9.6e-56  Score=393.39  Aligned_cols=197  Identities=29%  Similarity=0.372  Sum_probs=174.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-hhhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-IFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~~~~   88 (229)
                      +|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.... .....+++++
T Consensus         4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig   83 (359)
T 3fvq_A            4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG   83 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence            799999999999999999999999999999999999999999999999999999999999999983211 1122456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      |++|++.+++.+||+||+.++....+.     ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++||||
T Consensus        84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD  163 (359)
T 3fvq_A           84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD  163 (359)
T ss_dssp             EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            999999999999999999986433221     234678899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||++||+..++.+.+.+.++ ++.|.|+|+||||++++...+|
T Consensus       164 EPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aD  207 (359)
T 3fvq_A          164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYAD  207 (359)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCS
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC
Confidence            999999999999998766664 5679999999999999988765

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=4.7e-55  Score=388.77  Aligned_cols=196  Identities=27%  Similarity=0.349  Sum_probs=177.3

Q ss_pred             CCcEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            8 LPRLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         8 ~~~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....   ..++.
T Consensus        12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~   88 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---PQKRN   88 (355)
T ss_dssp             CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSS
T ss_pred             CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---hhhCc
Confidence            4589999999999 8888999999999999999999999999999999999999999999999999986543   23567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++.+||+||+.|+....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++||
T Consensus        89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL  168 (355)
T 1z47_A           89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLL  168 (355)
T ss_dssp             EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence            99999999999999999999987544321     2346788999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||++||+..++.+.+.|++++++ |.|+|+||||++++...+|
T Consensus       169 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad  214 (355)
T 1z47_A          169 FDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVAD  214 (355)
T ss_dssp             EESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC
Confidence            99999999999999999999998654 8999999999999988765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=1.7e-55  Score=367.19  Aligned_cols=190  Identities=31%  Similarity=0.465  Sum_probs=172.4

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+|+++||+++|++ ++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.      ..+..++
T Consensus         9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~------~~~~~i~   81 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT------KVKGKIF   81 (214)
T ss_dssp             CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG------GGGGGEE
T ss_pred             ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh------hhcCcEE
Confidence            57999999999998 9999999999999999999999999999999999999999999999999875      1356799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      |++|++.+++.+||.||+.++.....   ...++.++++.+++.+. ++++.+|||||||||+|||||+.+|++||||||
T Consensus        82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEP  160 (214)
T 1sgw_A           82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDP  160 (214)
T ss_dssp             EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEEST
T ss_pred             EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECC
Confidence            99999999999999999988654322   12346788999999888 999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++||+.+++.+.+++++++++|+|||++|||++++..++|
T Consensus       161 ts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d  201 (214)
T 1sgw_A          161 VVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNE  201 (214)
T ss_dssp             TTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEE
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999987668999999999998887765

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=8.7e-55  Score=387.73  Aligned_cols=194  Identities=23%  Similarity=0.289  Sum_probs=175.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   .+++++|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~   79 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---KYREVGM   79 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEE
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh---hhCcEEE
Confidence            5999999999999999999999999999999999999999999999999999999999999999875432   3467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||+||+.|+....+     ...++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDE  159 (359)
T 2yyz_A           80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDE  159 (359)
T ss_dssp             ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            9999999999999999998643222     12346789999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus       160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad  202 (359)
T 2yyz_A          160 PLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS  202 (359)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence            99999999999999999998654 8999999999999988765

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=8.8e-55  Score=386.40  Aligned_cols=193  Identities=24%  Similarity=0.341  Sum_probs=175.3

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      ||+++||+++|+++ +|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....   ..+++++|
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~   76 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAF   76 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEE
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc---hhhCcEEE
Confidence            58999999999988 999999999999999999999999999999999999999999999999986533   23568999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      ++|++.+++.+||+||+.++....+.  ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s  156 (348)
T 3d31_A           77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS  156 (348)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred             EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            99999999999999999987543221  2456789999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          168 ALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+..++.+.+.++++++ .|.|+|+||||++++...+|
T Consensus       157 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad  196 (348)
T 3d31_A          157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD  196 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999865 48999999999999888765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-54  Score=387.30  Aligned_cols=194  Identities=25%  Similarity=0.323  Sum_probs=176.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   .+++++|
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~   79 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---KDRNVGL   79 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEE
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH---hHCcEEE
Confidence            5999999999999899999999999999999999999999999999999999999999999999875432   2467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||+||+.++....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE  159 (362)
T 2it1_A           80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDE  159 (362)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            99999999999999999987543321     2346788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus       160 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad  202 (362)
T 2it1_A          160 PLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD  202 (362)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred             ccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence            99999999999999999998654 8999999999999887764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=2.2e-54  Score=387.04  Aligned_cols=194  Identities=26%  Similarity=0.363  Sum_probs=175.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC------Cchhhhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ------SGIFHQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~------~~~~~~~   83 (229)
                      +|+++||+++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++..      ..   ..
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~---~~   79 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVP---PK   79 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECC---GG
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCC---Hh
Confidence            5999999999999999999999999999999999999999999999999999999999999998754      22   13


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +++++|++|++.+++.+||+||+.|+....+.     ..++.++++.++|.++.++++.+|||||||||+|||||+.+|+
T Consensus        80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~  159 (372)
T 1g29_1           80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQ  159 (372)
T ss_dssp             GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred             HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            46799999999999999999999987544321     2346788999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus       160 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad  208 (372)
T 1g29_1          160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD  208 (372)
T ss_dssp             EEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred             EEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC
Confidence            99999999999999999999999998654 8999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=2.3e-54  Score=386.60  Aligned_cols=194  Identities=27%  Similarity=0.345  Sum_probs=169.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+++|+++++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++.....   .+++++|
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~   87 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISM   87 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEE
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh---hhCcEEE
Confidence            5999999999999999999999999999999999999999999999999999999999999999875432   3467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||+||+.|+....+.     ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus        88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDE  167 (372)
T 1v43_A           88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE  167 (372)
T ss_dssp             EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred             EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            99999999999999999986432211     2346788999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+..++.+.+.+++++++ |.|+|+||||++++...+|
T Consensus       168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad  210 (372)
T 1v43_A          168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD  210 (372)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred             CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999998654 8999999999999987765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=2e-54  Score=368.42  Aligned_cols=195  Identities=24%  Similarity=0.268  Sum_probs=167.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      +|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+  ++|++|+|+++|+++.........+..+
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i   82 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL   82 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence            69999999999999999999999999999999999999999999999999  7899999999999987544322234458


Q ss_pred             eEeecccccCCCCCHHHhHHHHHH-hcC---c----cccHHHHHHHhCC-ChhhcCCCCC-CChhHHHHHHHHHHHhcCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEV-LEG---K----QGNSLPALELMGL-GRLAKEKARM-LSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~-~~~---~----~~~~~~~l~~~~l-~~~~~~~~~~-LSgGqkqRv~lAral~~~p  157 (229)
                      +|++|++.+++.+|+.||+.+... ...   .    ..++.++++.+++ .+..++++.+ |||||||||+|||||+.+|
T Consensus        83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p  162 (250)
T 2d2e_A           83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP  162 (250)
T ss_dssp             CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred             EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence            899999999999999999987542 111   0    1245678999999 5788999999 9999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++|||||||++||+.+++.+.+++++++++|+|||++|||++++..+
T Consensus       163 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~  209 (250)
T 2d2e_A          163 TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYI  209 (250)
T ss_dssp             SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTS
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence            99999999999999999999999999876789999999999988775

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=6.9e-55  Score=376.85  Aligned_cols=199  Identities=23%  Similarity=0.331  Sum_probs=171.1

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC--CCchhhhhh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT--QSGIFHQYK   84 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~--~~~~~~~~~   84 (229)
                      ..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.  .... ...+
T Consensus        18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~-~~~~   96 (279)
T 2ihy_A           18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA-ETVR   96 (279)
T ss_dssp             -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH-HHHH
T ss_pred             CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH-HHHc
Confidence            345799999999999999999999999999999999999999999999999999999999999999875  3322 2345


Q ss_pred             hcceEeecccccC--CCCCHHHhHHHHHH----hcC--c---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           85 LQLNWLSLKDAVK--EKFTVLDNVQWFEV----LEG--K---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        85 ~~~~~~~~~~~~~--~~~tv~e~l~~~~~----~~~--~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      +.++|++|++.++  ..+||+||+.+...    ...  .   ..++.++++.+++.+..++++.+|||||||||+|||||
T Consensus        97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL  176 (279)
T 2ihy_A           97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARAL  176 (279)
T ss_dssp             TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence            6799999987643  34699999987421    011  1   12456789999999999999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE--EEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIV--IVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~ti--i~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++++++++|+||  |+||||++++...+|
T Consensus       177 ~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d  231 (279)
T 2ihy_A          177 MGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS  231 (279)
T ss_dssp             HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCC
T ss_pred             hCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCC
Confidence            99999999999999999999999999999987668999  999999998877664

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.2e-54  Score=386.48  Aligned_cols=197  Identities=26%  Similarity=0.392  Sum_probs=174.8

Q ss_pred             cEEEEeEEEEeCCee--eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--hhhhhhh
Q 027067           10 RLLLKNVSCMRNAQQ--ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--IFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~--iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~~~~~~~   85 (229)
                      +|+++||+++|++++  +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++....  .....++
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r   82 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence            699999999999888  999999999999999999999999999999999999999999999999875310  0112356


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      +++|++|++.+++.+||+||+.++....+.     ..++.++++.+++.++.++++.+|||||||||+|||||+.+|++|
T Consensus        83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL  162 (353)
T 1oxx_K           83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (353)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            799999999999999999999986433221     234678899999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+..++.+.+.++++++ .|.|+|+||||++++...+|
T Consensus       163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad  209 (353)
T 1oxx_K          163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD  209 (353)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999865 48999999999999988765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=4.3e-54  Score=369.48  Aligned_cols=193  Identities=26%  Similarity=0.406  Sum_probs=171.1

Q ss_pred             cEEEEeEEEEeC--C---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067           10 RLLLKNVSCMRN--A---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus        10 ~l~l~~l~~~~~--~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +|+++||+++|+  +   +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...    ..+
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----~~~   77 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY----EIR   77 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH----HHG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH----Hhh
Confidence            699999999997  5   6899999999999999999999999999999999999999999999999987531    345


Q ss_pred             hcceEeeccc-ccCCCCCHHHhHHHHHHh--cC--ccccHHHHHHHhCCC--hhhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           85 LQLNWLSLKD-AVKEKFTVLDNVQWFEVL--EG--KQGNSLPALELMGLG--RLAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        85 ~~~~~~~~~~-~~~~~~tv~e~l~~~~~~--~~--~~~~~~~~l~~~~l~--~~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      ..++|++|++ ..++.+||.||+.++...  ..  ...++.++++.+|+.  +..++++.+|||||||||+|||||+.+|
T Consensus        78 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p  157 (266)
T 2yz2_A           78 RNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP  157 (266)
T ss_dssp             GGEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             hhEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence            6799999985 466778999999875321  11  123467889999999  9999999999999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++++++++|.|||++|||++.+...+|
T Consensus       158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d  206 (266)
T 2yz2_A          158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVD  206 (266)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCS
T ss_pred             CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999999999999987679999999999999887664

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.1e-54  Score=366.31  Aligned_cols=191  Identities=26%  Similarity=0.319  Sum_probs=169.8

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      |++++||+++|++  +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|+++|+++....   ..+++++|
T Consensus         1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~i~~   74 (240)
T 2onk_A            1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP---PERRGIGF   74 (240)
T ss_dssp             CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC---TTTSCCBC
T ss_pred             CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc---hhhCcEEE
Confidence            4789999999976  49999999999 999999999999999999999999999999999999986432   23457999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ++|++.+++.+||.||+.++.....   ...++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus        75 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt  154 (240)
T 2onk_A           75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             EcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            9999999999999999987532211   1234667899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+.+++.+.+++.++++ .|+|||++|||++++...+|
T Consensus       155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d  195 (240)
T 2onk_A          155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD  195 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999865 48999999999999988765

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=8.4e-54  Score=367.88  Aligned_cols=198  Identities=20%  Similarity=0.243  Sum_probs=169.1

Q ss_pred             CCCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEEcCEeCCCCchhhhhh
Q 027067            7 PLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--SKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         7 ~~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      ..++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+  ++|++|+|+++|+++.........+
T Consensus        17 ~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~   96 (267)
T 2zu0_C           17 GSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG   96 (267)
T ss_dssp             ---CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred             CCceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence            44689999999999999999999999999999999999999999999999999  4689999999999986543222223


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHH-h---cC----c----cccHHHHHHHhCCC-hhhcCCCC-CCChhHHHHHHHH
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEV-L---EG----K----QGNSLPALELMGLG-RLAKEKAR-MLSMGQRKRLQLA  150 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~-~---~~----~----~~~~~~~l~~~~l~-~~~~~~~~-~LSgGqkqRv~lA  150 (229)
                      ..++|++|++.+++.+|+.||+.+... .   ..    .    ..++.++++.+++. ...++++. +|||||||||+||
T Consensus        97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA  176 (267)
T 2zu0_C           97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL  176 (267)
T ss_dssp             HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred             CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence            458999999999999999999976431 1   11    0    12356789999996 57888987 5999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |||+.+|++|||||||++||+.+++.+.+++++++++|+|||++|||++++...
T Consensus       177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~  230 (267)
T 2zu0_C          177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYI  230 (267)
T ss_dssp             HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTS
T ss_pred             HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhh
Confidence            999999999999999999999999999999999876789999999999988764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=6.2e-53  Score=358.70  Aligned_cols=190  Identities=26%  Similarity=0.426  Sum_probs=164.4

Q ss_pred             cEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      -++++||+++|  +++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...+..+
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~-~~~~~~i   85 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP-NWLRRQV   85 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHE
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhcE
Confidence            48999999999  46789999999999999999999999999999999999999999999999999875432 2345679


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++ .||.||+.++.. .....++.++++.+++.++.++           ++.+|||||||||+|||||+.+
T Consensus        86 ~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~  163 (247)
T 2ff7_A           86 GVVLQDNVLLN-RSIIDNISLANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN  163 (247)
T ss_dssp             EEECSSCCCTT-SBHHHHHTTTCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCCcccc-ccHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence            99999998886 599999987521 1122345677888888766554           4589999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++|||||||++||+.+++.+.+++++++ +|+|||++|||++.++.
T Consensus       164 p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~  209 (247)
T 2ff7_A          164 PKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKN  209 (247)
T ss_dssp             CSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTT
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHh
Confidence            99999999999999999999999999985 58999999999988764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=5.1e-53  Score=360.45  Aligned_cols=184  Identities=27%  Similarity=0.386  Sum_probs=165.9

Q ss_pred             cEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +|+++||+++|+ ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+              +..++
T Consensus         4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~--------------~~~i~   69 (253)
T 2nq2_C            4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV--------------YQSIG   69 (253)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE--------------CSCEE
T ss_pred             eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE--------------eccEE
Confidence            799999999998 889999999999999999999999999999999999999999999982              23589


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhc-------Cc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLE-------GK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~-------~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      |++|++.+++.+||.||+.++....       ..  ..++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus        70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l  149 (253)
T 2nq2_C           70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL  149 (253)
T ss_dssp             EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred             EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence            9999999988999999998864211       11  13456789999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||||||++||+.+++.+.+++.+++++ |.|||++|||++++...+|.
T Consensus       150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~  198 (253)
T 2nq2_C          150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK  198 (253)
T ss_dssp             EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSE
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence            9999999999999999999999998776 89999999999999887653

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=3.7e-53  Score=364.66  Aligned_cols=196  Identities=22%  Similarity=0.278  Sum_probs=166.2

Q ss_pred             CCcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            8 LPRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      ..+|+++||+++|++   +++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ..++
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~-~~~~   92 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH-HYLH   92 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH-HHHH
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH-HHHh
Confidence            357999999999986   789999999999999999999999999999999999999999999999999864332 2345


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCc-c--------ccHHHHHHHh--CCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-Q--------GNSLPALELM--GLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-~--------~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      .+++|++|++.+++ .||.||+.++...... .        ....++++.+  |+....++++.+|||||||||+|||||
T Consensus        93 ~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL  171 (271)
T 2ixe_A           93 TQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL  171 (271)
T ss_dssp             HHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred             ccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence            67999999998887 5999999875321111 0        1123455666  677777889999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+.+++.++++ +|+|||+||||++.+.. +|
T Consensus       172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d  224 (271)
T 2ixe_A          172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AH  224 (271)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CS
T ss_pred             hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CC
Confidence            999999999999999999999999999998754 48999999999998764 44

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=100.00  E-value=4.9e-53  Score=359.76  Aligned_cols=191  Identities=22%  Similarity=0.282  Sum_probs=170.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +++++||+++    ++|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|+++|+++..... ...+..++|
T Consensus         4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~-~~~~~~i~~   77 (249)
T 2qi9_C            4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSA-TKLALHRAY   77 (249)
T ss_dssp             EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCH-HHHHHHEEE
T ss_pred             EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCH-HHHhceEEE
Confidence            7999999987    6999999999999999999999999999999999999999 999999999854332 234567999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC-------eEEE
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP-------IWLL  162 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~-------illl  162 (229)
                      ++|++.+++.+||.||+.++........++.++++.+++.+..++++.+|||||||||+|||||+.+|+       +|||
T Consensus        78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL  157 (249)
T 2qi9_C           78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL  157 (249)
T ss_dssp             ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred             ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence            999999998999999998752111113456788999999999999999999999999999999999999       9999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||+|||+.+++.+.+++++++++|+|||++|||++.+...+|
T Consensus       158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d  201 (249)
T 2qi9_C          158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH  201 (249)
T ss_dssp             SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999987779999999999999988765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=3.1e-53  Score=359.58  Aligned_cols=193  Identities=25%  Similarity=0.395  Sum_probs=165.6

Q ss_pred             cEEEEeEEEEe-CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMR-NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~-~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      +++++||+++| +++++|++|||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..++..++
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~i~   79 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-ENWRSQIG   79 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-SCCTTTCC
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHHhhEE
Confidence            58999999999 67889999999999999999999999999999999999999999999999999865332 23456799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++ .||.||+.++........++.++++.+++.++.++           ++.+|||||||||+|||||+.+|
T Consensus        80 ~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p  158 (243)
T 1mv5_A           80 FVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (243)
T ss_dssp             EECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCC
Confidence            9999998877 49999998752111123346678888888766544           46799999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++|||||||++||+.+++.+.+++.+++ +|+|||++|||++.+.. +|
T Consensus       159 ~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d  205 (243)
T 1mv5_A          159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVD-AD  205 (243)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHH-CS
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHh-CC
Confidence            9999999999999999999999999987 58999999999988764 43

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=100.00  E-value=9e-52  Score=361.38  Aligned_cols=191  Identities=27%  Similarity=0.359  Sum_probs=165.2

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++..... ..++.++
T Consensus        52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~-~~~r~~i  130 (306)
T 3nh6_A           52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ-ASLRSHI  130 (306)
T ss_dssp             CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH-HHHHHTE
T ss_pred             CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH-HHHhcce
Confidence            4699999999995 6789999999999999999999999999999999999999999999999999987653 3467789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+|. .||+||+.++.... ...+..++++.+++.++.           .+++.+|||||||||+|||||+.+
T Consensus       131 ~~v~Q~~~lf~-~Tv~eNi~~~~~~~-~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~  208 (306)
T 3nh6_A          131 GVVPQDTVLFN-DTIADNIRYGRVTA-GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA  208 (306)
T ss_dssp             EEECSSCCCCS-EEHHHHHHTTSTTC-CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEecCCccCc-ccHHHHHHhhcccC-CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence            99999998885 59999998754221 223455666666665443           456689999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |+||||||||++||+.++..+.+.+.++.+ ++|+|+|||+++.+..
T Consensus       209 p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~  254 (306)
T 3nh6_A          209 PGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLSTVVN  254 (306)
T ss_dssp             CSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHHHHT
T ss_pred             CCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHHHHc
Confidence            999999999999999999999999998854 7899999999999877

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1e-51  Score=354.23  Aligned_cols=186  Identities=28%  Similarity=0.368  Sum_probs=166.2

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      +|+++||+++|++    +++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++...   .. ++
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~---~~-~~   74 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI---RN-YI   74 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC---SC-CT
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch---HH-hh
Confidence            5899999999987    789999999999 9999999999999999999999999 9999999999987532   12 45


Q ss_pred             cce-EeecccccCCCCCHHHhHHHHHHhcC-ccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           86 QLN-WLSLKDAVKEKFTVLDNVQWFEVLEG-KQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        86 ~~~-~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      .++ |++|++.+  .+|+.||+.++..... ...++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus        75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL  152 (263)
T 2pjz_A           75 RYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL  152 (263)
T ss_dssp             TEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             heEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            789 99999877  7899999988654322 234567889999999 999999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||++||+.+++.+.++++++++   |||++|||++++...+|
T Consensus       153 DEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~~~~~~~d  193 (263)
T 2pjz_A          153 DEPFENVDAARRHVISRYIKEYGK---EGILVTHELDMLNLYKE  193 (263)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGGGGGGCTT
T ss_pred             ECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHHHHHHhcC
Confidence            999999999999999999988753   99999999999887776

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=100.00  E-value=3.4e-51  Score=350.38  Aligned_cols=190  Identities=23%  Similarity=0.324  Sum_probs=162.1

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ++|+++||+++|++   +++|++|||+|++||+++|+||||||||||+|+|+|+++| +|+|+++|+++..... ...+.
T Consensus        16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~-~~~~~   93 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR-NSIRS   93 (260)
T ss_dssp             CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCH-HHHHT
T ss_pred             CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCH-HHHhc
Confidence            57999999999976   4699999999999999999999999999999999999987 8999999999864332 23456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~  154 (229)
                      .++|++|++.+++ .||.||+.++.. .....+..++++.+++.+..           ++++.+|||||||||+|||||+
T Consensus        94 ~i~~v~Q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~  171 (260)
T 2ghi_A           94 IIGIVPQDTILFN-ETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL  171 (260)
T ss_dssp             TEEEECSSCCCCS-EEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCcccc-cCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence            7999999998886 599999987421 11223455677777775442           3678899999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .+|++|||||||++||+.+++.+.+++.++++ ++|||++|||++.+..
T Consensus       172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~~~~  219 (260)
T 2ghi_A          172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLSTISS  219 (260)
T ss_dssp             HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGSTT
T ss_pred             cCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHh
Confidence            99999999999999999999999999999864 8999999999988754

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=1e-49  Score=335.20  Aligned_cols=179  Identities=23%  Similarity=0.329  Sum_probs=149.8

Q ss_pred             CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .+|+++||+++|+  ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|              .
T Consensus         5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------~   70 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------R   70 (229)
T ss_dssp             EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------------C
T ss_pred             ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------------E
Confidence            3799999999994  57899999999999999999999999999999999999999999999987              3


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. ||.||+.++...  ......+.++.+++.+..           ++++.+|||||||||+|||||+.
T Consensus        71 i~~v~q~~~~~~~-tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~  147 (229)
T 2pze_A           71 ISFCSQFSWIMPG-TIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK  147 (229)
T ss_dssp             EEEECSSCCCCSB-CHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred             EEEEecCCcccCC-CHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence            7899999988875 999999874211  111233455555554333           33468999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYI-IAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~-l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.+++.+.+. +..+. +|+|||++|||++.+.. +|
T Consensus       148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~~~~-~d  197 (229)
T 2pze_A          148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK-AD  197 (229)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH-CS
T ss_pred             CCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHHHHh-CC
Confidence            9999999999999999999999886 45554 47899999999988764 44

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.1e-50  Score=361.11  Aligned_cols=189  Identities=22%  Similarity=0.272  Sum_probs=167.0

Q ss_pred             CcEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..|+++||+|+|  +++++|++|||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++..... ..+++.
T Consensus        18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~-~~~rr~   95 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL-EQWRKA   95 (390)
T ss_dssp             CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH-HHHHHT
T ss_pred             CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh-HHHhCC
Confidence            579999999999  67889999999999999999999999999999999999998 89999999999876543 335678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCC-----------CChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARM-----------LSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----------LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++ .||+||+.++.  .....++.++++.+++.++.++++.+           |||||||||+|||||+.
T Consensus        96 ig~v~Q~~~lf~-~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~  172 (390)
T 3gd7_A           96 FGVIPQKVFIFS-GTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS  172 (390)
T ss_dssp             EEEESCCCCCCS-EEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCcccCc-cCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence            999999999887 59999997432  11234567889999999999999998           99999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+..++.+.+.++++. .+.|+|++|||++.+..
T Consensus       173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e~~~~  219 (390)
T 3gd7_A          173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAMLE  219 (390)
T ss_dssp             TCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSGGGTT
T ss_pred             CCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHHHHHh
Confidence            999999999999999999999999998764 47899999999876544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.6e-49  Score=335.69  Aligned_cols=178  Identities=21%  Similarity=0.270  Sum_probs=149.2

Q ss_pred             cEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      +++++||+++|+  ++++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|              .+
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------------~i   68 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------------SV   68 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------------CE
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------EE
Confidence            599999999997  57899999999999999999999999999999999999999999999988              27


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+ +..||.||+.++...  ......++++.+++.+           ..++++.+|||||||||+|||||+.+
T Consensus        69 ~~v~Q~~~~-~~~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~  145 (237)
T 2cbz_A           69 AYVPQQAWI-QNDSLRENILFGCQL--EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN  145 (237)
T ss_dssp             EEECSSCCC-CSEEHHHHHHTTSCC--CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred             EEEcCCCcC-CCcCHHHHhhCcccc--CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence            899998765 578999999875321  1122333444444321           24678999999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIA---EHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~---~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |++|||||||++||+.+++.+.+.+.   .++ +|+|||++|||++.+. .+|
T Consensus       146 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~~~-~~d  196 (237)
T 2cbz_A          146 ADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSYLP-QVD  196 (237)
T ss_dssp             CSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTTGG-GSS
T ss_pred             CCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHHHH-hCC
Confidence            99999999999999999999998884   333 4899999999998875 344

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=100.00  E-value=2.7e-48  Score=365.72  Aligned_cols=192  Identities=29%  Similarity=0.406  Sum_probs=166.4

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .+++++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~  418 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL-ASLRNQ  418 (582)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH-HHHHHT
T ss_pred             CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH-HHHHhh
Confidence            46999999999973  789999999999999999999999999999999999999999999999999976543 345678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++.......++..++++.+++.++.+           +++.+||||||||++|||||+.
T Consensus       419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~  497 (582)
T 3b60_A          419 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  497 (582)
T ss_dssp             EEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             CeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999998875 999999875311122344667777777765543           4568999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+.++++.+ |+|+|++||+++.++.
T Consensus       498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~  544 (582)
T 3b60_A          498 DSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQ  544 (582)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTT
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHh
Confidence            9999999999999999999999999999865 8999999999988764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=100.00  E-value=2.6e-48  Score=365.85  Aligned_cols=194  Identities=27%  Similarity=0.383  Sum_probs=167.3

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .+++++||+++|++  +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~~~~  418 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL-TNLRRH  418 (582)
T ss_pred             CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH-HHHhcC
Confidence            46999999999974  689999999999999999999999999999999999999999999999999875443 345678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++.......++..++++.+++.++.++           ++.+||||||||++|||||+.
T Consensus       419 i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~  497 (582)
T 3b5x_A          419 FALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR  497 (582)
T ss_pred             eEEEcCCCccccc-cHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence            9999999998875 9999998753111223456677888877665544           458999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.+++.+.+.++++++ |+|+|++||+++.+.. +|
T Consensus       498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~-~d  546 (582)
T 3b5x_A          498 DAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLSTIEQ-AD  546 (582)
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHHh-CC
Confidence            9999999999999999999999999998864 8999999999998864 44

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=100.00  E-value=2.4e-47  Score=359.04  Aligned_cols=191  Identities=25%  Similarity=0.397  Sum_probs=164.6

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|++  +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...+.+
T Consensus       338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~-~~~r~~  416 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT-GSLRNQ  416 (578)
T ss_dssp             CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH-HHHHHT
T ss_pred             CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-HHHhhh
Confidence            46999999999964  579999999999999999999999999999999999999999999999999876543 345778


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++... ...++..++++.+++.++.++           ++.+||||||||++|||||+.
T Consensus       417 i~~v~Q~~~l~~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~  494 (578)
T 4a82_A          417 IGLVQQDNILFSD-TVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN  494 (578)
T ss_dssp             EEEECSSCCCCSS-BHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred             eEEEeCCCccCcc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence            9999999998876 999999875321 123345667777777555443           446999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+.+++++ +++|+|++||+++.+..
T Consensus       495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~  541 (578)
T 4a82_A          495 NPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLSTITH  541 (578)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGTTT
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence            999999999999999999999999998875 47899999999998865

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-47  Score=360.76  Aligned_cols=191  Identities=23%  Similarity=0.311  Sum_probs=166.5

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++++||+++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+.++
T Consensus       353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~-~~~r~~i  431 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR-SSLRSSI  431 (598)
T ss_dssp             CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCH-HHHHHHE
T ss_pred             CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCH-HHHHhce
Confidence            3699999999996 4679999999999999999999999999999999999999999999999999976543 3467789


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCC-----------CCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKA-----------RMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.+++. |++||+.++... ...++..++++.+++.++.++.|           .+||||||||++|||||+.+
T Consensus       432 ~~v~Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~  509 (598)
T 3qf4_B          432 GIVLQDTILFST-TVKENLKYGNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN  509 (598)
T ss_dssp             EEECTTCCCCSS-BHHHHHHSSSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred             EEEeCCCccccc-cHHHHHhcCCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999988864 999999875321 12344566777777766666555           79999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |++|||||||++||+.+++.+.+.+.++. +|+|+|+|||+++.+..
T Consensus       510 p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~~~~  555 (598)
T 3qf4_B          510 PKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNTIKN  555 (598)
T ss_dssp             CSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTHHHH
T ss_pred             CCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence            99999999999999999999999999885 58999999999999876

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=3e-47  Score=358.92  Aligned_cols=191  Identities=19%  Similarity=0.269  Sum_probs=163.1

Q ss_pred             CcEEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..++++||+++|+  ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.+
T Consensus       340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~-~~~r~~  418 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL-KDLRGH  418 (587)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH-HHHHHH
T ss_pred             CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH-HHHHhh
Confidence            4699999999994  4689999999999999999999999999999999999999999999999999876543 345678


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-----------hhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-----------RLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.+++. |++||+.++... ...++..++++..++.           ...++++.+||||||||++|||||+.
T Consensus       419 i~~v~Q~~~lf~~-tv~eni~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~  496 (587)
T 3qf4_A          419 ISAVPQETVLFSG-TIKENLKWGRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK  496 (587)
T ss_dssp             EEEECSSCCCCSE-EHHHHHTTTCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred             eEEECCCCcCcCc-cHHHHHhccCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence            9999999998865 999999875321 1223344555555443           34467789999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|++|||||||++||+.+++.+.+.++++. +|+|+|+|||+++.+..
T Consensus       497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~~~~  543 (587)
T 3qf4_A          497 KPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPTALL  543 (587)
T ss_dssp             CCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHHHTT
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHHHHh
Confidence            999999999999999999999999998874 58999999999998863

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=100.00  E-value=9.5e-47  Score=327.51  Aligned_cols=174  Identities=25%  Similarity=0.310  Sum_probs=134.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ++++++||++.  .+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|              +++
T Consensus        39 ~~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~  102 (290)
T 2bbs_A           39 DSLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RIS  102 (290)
T ss_dssp             -------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEE
T ss_pred             ceEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEE
Confidence            57999999986  36799999999999999999999999999999999999999999999987              378


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++. ||+||+. ..  ........++++.+++.+..+           +++.+|||||||||+|||||+.+|
T Consensus       103 ~v~Q~~~l~~~-tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p  178 (290)
T 2bbs_A          103 FCSQNSWIMPG-TIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA  178 (290)
T ss_dssp             EECSSCCCCSS-BHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCC
T ss_pred             EEeCCCccCcc-cHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCC
Confidence            99999888875 9999997 31  111112334556666654433           345899999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYII-AEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l-~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ++|||||||++||+.+++.+.+.+ ..++ +|+|||++|||++.+..
T Consensus       179 ~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~~~~  224 (290)
T 2bbs_A          179 DLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEHLKK  224 (290)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHHHHH
T ss_pred             CEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHHHHc
Confidence            999999999999999999998863 4443 48899999999988754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=1.6e-44  Score=337.19  Aligned_cols=184  Identities=24%  Similarity=0.289  Sum_probs=161.4

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++++|+++.|++. .|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+.              ..+
T Consensus       285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--------------~~i  349 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--------------LTV  349 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--------------CCE
T ss_pred             CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--------------ceE
Confidence            3579999999999875 6999999999999999999999999999999999999999999751              258


Q ss_pred             eEeecccccCCCCCHHHhHHHH-HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWF-EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      +|++|+....+.+||.+++... .........+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt  429 (538)
T 1yqt_A          350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS  429 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9999998777788998887653 111122234567888999988899999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+.+++.+.++++++. +.|.|||+||||++++..++|
T Consensus       430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d  470 (538)
T 1yqt_A          430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD  470 (538)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999986 458999999999999998775

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=2.3e-44  Score=339.96  Aligned_cols=184  Identities=24%  Similarity=0.285  Sum_probs=161.9

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.              ..+
T Consensus       355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--------------~~i  419 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------------LTV  419 (607)
T ss_dssp             CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--------------CCE
T ss_pred             ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--------------eEE
Confidence            3579999999999875 6899999999999999999999999999999999999999999751              258


Q ss_pred             eEeecccccCCCCCHHHhHHHH-HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWF-EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      +|++|+....+.+||.|++... .........+.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt  499 (607)
T 3bk7_A          420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPS  499 (607)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred             EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            9999998777888999988654 111112234567899999998999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+.+++.+.++++++. +.|.|||+||||++++...+|
T Consensus       500 ~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad  540 (607)
T 3bk7_A          500 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD  540 (607)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999985 468999999999999988765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.8e-44  Score=336.63  Aligned_cols=185  Identities=19%  Similarity=0.181  Sum_probs=160.0

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+.++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++|++|+|.+++.             .+
T Consensus       267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~-------------~i  332 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ-------------IL  332 (538)
T ss_dssp             CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC-------------CE
T ss_pred             cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe-------------ee
Confidence            3579999999999874 588889999999999999999999999999999999999999987542             35


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhc--CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLE--GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++|+.......||.||+.+.....  .......++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus       333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP  412 (538)
T 3ozx_A          333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP  412 (538)
T ss_dssp             EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred             EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            77888766666789999987632111  1122356778889999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          166 SVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+|||+.++..+.++++++++ .|.|||+||||++++..++|
T Consensus       413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD  454 (538)
T 3ozx_A          413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD  454 (538)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999864 58999999999999998765

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=2.5e-44  Score=364.37  Aligned_cols=193  Identities=25%  Similarity=0.379  Sum_probs=167.7

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+++|++   .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+. ..++.
T Consensus      1075 g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~-~~lR~ 1153 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP-EHTRS 1153 (1321)
T ss_dssp             CCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH-HHHHT
T ss_pred             CeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH-HHHHh
Confidence            36999999999954   469999999999999999999999999999999999999999999999999988764 46788


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHH-hcCccccHHHHHHHhCCChhhc-----------CCCCCCChhHHHHHHHHHHH
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEV-LEGKQGNSLPALELMGLGRLAK-----------EKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral  153 (229)
                      +++++||++.+|.. |++|||.++.. .....+++.++++..++.++..           ....+||||||||++|||||
T Consensus      1154 ~i~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A         1154 QIAIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp             TEEEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred             heEEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence            99999999999876 99999987532 1123456778888888765533           34578999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +++|+|||||||||+||+++.+.+.+.+++.. +|+|+|+|+|+++.+.++
T Consensus      1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsTi~~a 1282 (1321)
T 4f4c_A         1233 VRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNTVMNA 1282 (1321)
T ss_dssp             HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSSTTTTC
T ss_pred             HhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHHHHhC
Confidence            99999999999999999999999998887753 489999999999988775

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=2.5e-43  Score=356.31  Aligned_cols=191  Identities=25%  Similarity=0.361  Sum_probs=162.8

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+++|++   .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~-~~~r~  464 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV-RYLRE  464 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCH-HHHHH
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCH-HHHHh
Confidence            35999999999964   479999999999999999999999999999999999999999999999999976653 34667


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++|++|++.+++. |++||+.++... ...++..++++..++.+           ...+++.+|||||||||+|||||+
T Consensus       465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~  542 (1284)
T 3g5u_A          465 IIGVVSQEPVLFAT-TIAENIRYGRED-VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV  542 (1284)
T ss_dssp             HEEEECSSCCCCSS-CHHHHHHHHCSS-CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred             heEEEcCCCccCCc-cHHHHHhcCCCC-CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence            89999999998876 999999876321 12233445555554433           234567799999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .+|+|||||||||+||+++.+.+.+.++.+. +|+|+|+|||+++.+..
T Consensus       543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~i~~  590 (1284)
T 3g5u_A          543 RNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLSTVRN  590 (1284)
T ss_dssp             HCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHc
Confidence            9999999999999999999999999988764 58999999999999877

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=100.00  E-value=4.6e-44  Score=337.91  Aligned_cols=192  Identities=19%  Similarity=0.227  Sum_probs=156.8

Q ss_pred             cEEE--------EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---------EEcC
Q 027067           10 RLLL--------KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---------LWNG   71 (229)
Q Consensus        10 ~l~l--------~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---------~~~g   71 (229)
                      +|++        +||+++|+++ .+|+++| +|++||+++|+||||||||||+|+|+|+++|++|++         .++|
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G  161 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG  161 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred             eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence            5888        8999999876 4999999 999999999999999999999999999999999995         3445


Q ss_pred             EeCCCCc-hhhhhhhcceEeecccccCC---CCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHH
Q 027067           72 HDITQSG-IFHQYKLQLNWLSLKDAVKE---KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRL  147 (229)
Q Consensus        72 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv  147 (229)
                      .++.... ........+++++|.....+   ..|+.||+..    .....++.++++.+|+.+..++++.+|||||||||
T Consensus       162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRv  237 (607)
T 3bk7_A          162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VDEVGKFEEVVKELELENVLDRELHQLSGGELQRV  237 (607)
T ss_dssp             STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHH
T ss_pred             EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHH
Confidence            4332100 00011234566666532222   2389888753    22235688899999999999999999999999999


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||+.+|++|||||||++||+.+++.+.++|++++++|.|||+||||++++..++|
T Consensus       238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~ad  296 (607)
T 3bk7_A          238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSD  296 (607)
T ss_dssp             HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCC
Confidence            99999999999999999999999999999999999998789999999999999887754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=100.00  E-value=5.3e-44  Score=333.66  Aligned_cols=191  Identities=19%  Similarity=0.227  Sum_probs=153.7

Q ss_pred             EEE-EeEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE---------EEcCEeCCCCc-
Q 027067           11 LLL-KNVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI---------LWNGHDITQSG-   78 (229)
Q Consensus        11 l~l-~~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I---------~~~g~~~~~~~-   78 (229)
                      .++ +||+++|+++ .+|+++| +|++||++||+||||||||||+|+|+|+++|++|++         .++|.++.... 
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~   99 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE   99 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence            566 6999999886 5999999 999999999999999999999999999999999985         34444321100 


Q ss_pred             hhhhhhhcceEeecccccCCC---CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           79 IFHQYKLQLNWLSLKDAVKEK---FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~---~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ........+++++|.....+.   .++.+++..    .....++.++++.+|+.+..++++.+|||||||||+|||||+.
T Consensus       100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~  175 (538)
T 1yqt_A          100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----ADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLR  175 (538)
T ss_dssp             HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            000012346677765433221   378887753    1223568889999999988999999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.+++.+.+++++++++|.|||+||||++++..++|
T Consensus       176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~d  226 (538)
T 1yqt_A          176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD  226 (538)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence            999999999999999999999999999998789999999999999988764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=100.00  E-value=3e-43  Score=355.74  Aligned_cols=192  Identities=24%  Similarity=0.395  Sum_probs=163.8

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..++++||+++|++   .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ...+.
T Consensus      1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~ 1107 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV-QWLRA 1107 (1284)
T ss_dssp             CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH-HHHTT
T ss_pred             CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH-HHHHh
Confidence            35999999999975   369999999999999999999999999999999999999999999999999987654 45677


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhc-CccccHHHHHHHhCCChhhcC-----------CCCCCChhHHHHHHHHHHH
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLE-GKQGNSLPALELMGLGRLAKE-----------KARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGqkqRv~lAral  153 (229)
                      +++|++|++.++. .|++||+.++.... ...++..++++..++.++.++           .+.+|||||||||+|||||
T Consensus      1108 ~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A         1108 QLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp             SCEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred             ceEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence            8999999998775 59999998753211 122345566777776555443           4568999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +.+|+||||||||++||+.+++.+.+.+++. .+|+|+|+||||++.+..
T Consensus      1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~i~~ 1235 (1284)
T 3g5u_A         1187 VRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLSTIQN 1235 (1284)
T ss_dssp             HHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTGGGS
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHHHHc
Confidence            9999999999999999999999999999875 458999999999999866

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=100.00  E-value=6.8e-43  Score=353.95  Aligned_cols=191  Identities=24%  Similarity=0.363  Sum_probs=166.9

Q ss_pred             cEEEEeEEEEeC---CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRN---AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~---~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .++++||+|+|+   ++++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.++...+. ..++.+
T Consensus       415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~-~~lr~~  493 (1321)
T 4f4c_A          415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL-EFLRKN  493 (1321)
T ss_dssp             CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHH
T ss_pred             cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH-HHHhhc
Confidence            599999999995   4679999999999999999999999999999999999999999999999999987764 456788


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.++.. |++|||.++... ..++++.++++..++.++.           ..+..+||||||||++||||++.
T Consensus       494 i~~v~Q~~~Lf~~-TI~eNI~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~  571 (1321)
T 4f4c_A          494 VAVVSQEPALFNC-TIEENISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR  571 (1321)
T ss_dssp             EEEECSSCCCCSE-EHHHHHHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred             ccccCCcceeeCC-chhHHHhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence            9999999998866 999999986421 2345567777777765443           35668999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +|+|||||||||+||+++.+.+.+.+..+. +|+|+|+|||+++.+..+
T Consensus       572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~i~~a  619 (1321)
T 4f4c_A          572 NPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLSTIRNA  619 (1321)
T ss_dssp             CCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTTTTTC
T ss_pred             CCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHHHHhC
Confidence            999999999999999999889999998875 489999999999888764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-40  Score=314.83  Aligned_cols=179  Identities=22%  Similarity=0.247  Sum_probs=151.4

Q ss_pred             EeEEEEeCC-eeeeeeeeEEEeCC-----cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           14 KNVSCMRNA-QQILRHVNISIHDG-----GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        14 ~~l~~~~~~-~~iL~~vsl~i~~G-----e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+++++|++ ..+++++||++.+|     |+++|+||||||||||+|+|+|+++|++|+.      +.        ...+
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~--------~~~i  415 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP--------KLNV  415 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC--------SCCE
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc--------CCcE
Confidence            667788875 56899999999999     7899999999999999999999999999962      11        1357


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHh-cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVL-EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      +|++|+.......||.+++...... ........++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT  495 (608)
T 3j16_B          416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS  495 (608)
T ss_dssp             EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred             EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence            8999887666667999987532110 011234567899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHR-KKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+.++..+.++++++. +.|.|||+||||++++...+|
T Consensus       496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD  536 (608)
T 3j16_B          496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD  536 (608)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            9999999999999999975 569999999999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=2.2e-40  Score=324.32  Aligned_cols=196  Identities=21%  Similarity=0.244  Sum_probs=144.4

Q ss_pred             CCcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe-CC---------
Q 027067            8 LPRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD-IT---------   75 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~-~~---------   75 (229)
                      .++|+++||+++|++  +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.. +.         
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~~~I~yv~Q~~~~~  748 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAH  748 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTTCCEEEECHHHHHH
T ss_pred             CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCccceEeeccchhhh
Confidence            357999999999965  689999999999999999999999999999999999999999999997620 00         


Q ss_pred             -----CCchhh--hhh-----------------------------------hc-c----------eEeec-------ccc
Q 027067           76 -----QSGIFH--QYK-----------------------------------LQ-L----------NWLSL-------KDA   95 (229)
Q Consensus        76 -----~~~~~~--~~~-----------------------------------~~-~----------~~~~~-------~~~   95 (229)
                           .....+  ++.                                   +. .          .+..+       +-.
T Consensus       749 l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~  828 (986)
T 2iw3_A          749 IESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIG  828 (986)
T ss_dssp             GGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTT
T ss_pred             hhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhhhh
Confidence                 000000  000                                   00 0          00000       000


Q ss_pred             ----cCCCCCHHHhHHHH--------HH----h-----------c-CccccHHHHHHHhCCCh-h-hcCCCCCCChhHHH
Q 027067           96 ----VKEKFTVLDNVQWF--------EV----L-----------E-GKQGNSLPALELMGLGR-L-AKEKARMLSMGQRK  145 (229)
Q Consensus        96 ----~~~~~tv~e~l~~~--------~~----~-----------~-~~~~~~~~~l~~~~l~~-~-~~~~~~~LSgGqkq  145 (229)
                          .+..+++.+|+.+.        ..    .           . ....++.++++.+|+.. . .++++.+|||||||
T Consensus       829 l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQ  908 (986)
T 2iw3_A          829 MKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKV  908 (986)
T ss_dssp             STTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHHHH
T ss_pred             cccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHHHH
Confidence                12234444442110        00    0           0 01234677899999975 4 68999999999999


Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||+|||||+.+|++|||||||+|||+.+...+.+.++++   +.|||+||||++++...+|
T Consensus       909 RVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e~v~~l~D  966 (986)
T 2iw3_A          909 KLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAEFTKNLTE  966 (986)
T ss_dssp             HHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHHHHTTTCC
T ss_pred             HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHHHHHHhCC
Confidence            999999999999999999999999999998888877654   6799999999999988775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=100.00  E-value=1.4e-39  Score=318.62  Aligned_cols=178  Identities=24%  Similarity=0.287  Sum_probs=150.1

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ..+...|++++|+++.+|+|+||+|++|++++|+||||||||||+|+|+|      |+|  +|.+...       ..+++
T Consensus       434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-------~~~~~  498 (986)
T 2iw3_A          434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-------ECRTV  498 (986)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-------TSCEE
T ss_pred             ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-------ceeEE
Confidence            35788899999999999999999999999999999999999999999995      443  3433211       12357


Q ss_pred             Eeeccc-ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           89 WLSLKD-AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        89 ~~~~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      |++|+. .+++.+|+.||+.+  ...+...++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus       499 ~v~q~~~~~~~~ltv~e~l~~--~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPT  576 (986)
T 2iw3_A          499 YVEHDIDGTHSDTSVLDFVFE--SGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPT  576 (986)
T ss_dssp             ETTCCCCCCCTTSBHHHHHHT--TCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred             EEcccccccccCCcHHHHHHH--hhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            777764 56788899999875  1111134567889999995 6789999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ++||+.+++.+.++|++   .|.|||+||||++++...+|
T Consensus       577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~ad  613 (986)
T 2iw3_A          577 NHLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCE  613 (986)
T ss_dssp             TTCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCS
T ss_pred             cCCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCC
Confidence            99999999999999987   58999999999999998765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=4.8e-40  Score=313.96  Aligned_cols=180  Identities=25%  Similarity=0.368  Sum_probs=120.7

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH---------------------HHHHCCCCCC-------ccEEEEcCE
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFL---------------------RMLAGFSKPS-------AGEILWNGH   72 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl---------------------~~i~Gl~~p~-------~G~I~~~g~   72 (229)
                      ....+|+||||+|++||++||+||||||||||+                     +++.|+.+|+       .|.|.++|.
T Consensus        29 ~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~  108 (670)
T 3ux8_A           29 ARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQK  108 (670)
T ss_dssp             ECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSC
T ss_pred             CCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCc
Confidence            356799999999999999999999999999998                     9999999998       455566665


Q ss_pred             eCCCCchhhhhhhcceEeecc-------------------cccCCCCCHHHhHHHHHHhc--Cccc-----------cHH
Q 027067           73 DITQSGIFHQYKLQLNWLSLK-------------------DAVKEKFTVLDNVQWFEVLE--GKQG-----------NSL  120 (229)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~tv~e~l~~~~~~~--~~~~-----------~~~  120 (229)
                      +....     .+..+++++|.                   ...++.+||.||+.++....  ....           +..
T Consensus       109 ~~~~~-----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (670)
T 3ux8_A          109 TTSRN-----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL  183 (670)
T ss_dssp             C----------CCBHHHHTTCC-------------------------CC--------------------------CHHHH
T ss_pred             hhhcc-----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH
Confidence            44321     11122232222                   22345678999987643211  0000           112


Q ss_pred             HHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          121 PALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       121 ~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      ++++.+||.+. .++++.+|||||||||+|||||+.+|+  +|||||||+|||+..++.+.+++++++++|.|||+||||
T Consensus       184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd  263 (670)
T 3ux8_A          184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD  263 (670)
T ss_dssp             HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred             HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            34788999765 689999999999999999999999998  999999999999999999999999998889999999999


Q ss_pred             hhhHHhhhc
Q 027067          198 PIQIEDAMN  206 (229)
Q Consensus       198 ~~~~~~~~~  206 (229)
                      ++.+.. +|
T Consensus       264 ~~~~~~-~d  271 (670)
T 3ux8_A          264 EDTMLA-AD  271 (670)
T ss_dssp             HHHHHH-CS
T ss_pred             HHHHhh-CC
Confidence            987654 44

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-39  Score=307.86  Aligned_cols=187  Identities=22%  Similarity=0.263  Sum_probs=139.3

Q ss_pred             eEEEEeCCe-eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------EcCEeCCCCchhhh
Q 027067           15 NVSCMRNAQ-QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-----------WNGHDITQSGIFHQ   82 (229)
Q Consensus        15 ~l~~~~~~~-~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-----------~~g~~~~~~~~~~~   82 (229)
                      |++++|+.. ..|++++ .+++||++||+||||||||||||+|+|+++|++|+|.           +.|.++..  .+..
T Consensus        82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~--~~~~  158 (608)
T 3j16_B           82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQN--YFTK  158 (608)
T ss_dssp             TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHH--HHHH
T ss_pred             CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhh--hhhH
Confidence            467888754 4677777 6899999999999999999999999999999999982           22211100  0000


Q ss_pred             -hhhcce--Eeecccc----c--CCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           83 -YKLQLN--WLSLKDA----V--KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        83 -~~~~~~--~~~~~~~----~--~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                       ....+.  +.++...    .  .+..++.+++...  ......++.++++.+++.+..++++.+|||||||||+|||||
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL  236 (608)
T 3j16_B          159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR--MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSC  236 (608)
T ss_dssp             HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHH--CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhh--hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHH
Confidence             001111  1111100    0  0111333333211  111234577899999999999999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.++..+.+++++++++|.|||+||||++++..++|
T Consensus       237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~d  289 (608)
T 3j16_B          237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSD  289 (608)
T ss_dssp             HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCS
T ss_pred             HhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999999998889999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-39  Score=302.18  Aligned_cols=183  Identities=25%  Similarity=0.333  Sum_probs=140.4

Q ss_pred             eEEEEeCCeeeeeeeeEE-EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE-----------EEcCEeCCCCchhhh
Q 027067           15 NVSCMRNAQQILRHVNIS-IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-----------LWNGHDITQSGIFHQ   82 (229)
Q Consensus        15 ~l~~~~~~~~iL~~vsl~-i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I-----------~~~g~~~~~~~~~~~   82 (229)
                      +...+||..- ++-..|. +++||++||+||||||||||+|+|+|+++|++|+|           .++|+++...  +..
T Consensus         4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~--~~~   80 (538)
T 3ozx_A            4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNY--FKE   80 (538)
T ss_dssp             CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHH--HHH
T ss_pred             CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHH--HHH
Confidence            4667886432 3333343 45899999999999999999999999999999998           5666554211  111


Q ss_pred             -hhh------cceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           83 -YKL------QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        83 -~~~------~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                       ...      .+.++.+.+.++ ..++.+++..    ......+.++++.+++....++++.+|||||||||+|||||+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~l~~----~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~  155 (538)
T 3ozx_A           81 LYSNELKIVHKIQYVEYASKFL-KGTVNEILTK----IDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLR  155 (538)
T ss_dssp             HHTTCCCEEEECSCTTGGGTTC-CSBHHHHHHH----HCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred             Hhhcccchhhccchhhhhhhhc-cCcHHHHhhc----chhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence             011      122222222222 2367765532    1234567889999999999999999999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|++|||||||++||+.++..+.++++++++ |+|||+||||++++..++|
T Consensus       156 ~p~illlDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~~~~~~~d  205 (538)
T 3ozx_A          156 EADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLIVLDYLTD  205 (538)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHCS
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChHHHHhhCC
Confidence            9999999999999999999999999999976 8999999999999988765

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=100.00  E-value=4.2e-37  Score=293.62  Aligned_cols=182  Identities=25%  Similarity=0.338  Sum_probs=134.2

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH----------------------CCCCCCccEEEEcCEeCCCCch
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA----------------------GFSKPSAGEILWNGHDITQSGI   79 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~----------------------Gl~~p~~G~I~~~g~~~~~~~~   79 (229)
                      ...+|+||||+|++||+++|+||||||||||+++|+                      |+..+ .|.|.+++.++.....
T Consensus       334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~  412 (670)
T 3ux8_A          334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPR  412 (670)
T ss_dssp             CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTT
T ss_pred             cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCC
Confidence            356899999999999999999999999999998754                      44443 4688888877643210


Q ss_pred             ---------hhhhh-------------------------------hcceEeeccccc-----------------------
Q 027067           80 ---------FHQYK-------------------------------LQLNWLSLKDAV-----------------------   96 (229)
Q Consensus        80 ---------~~~~~-------------------------------~~~~~~~~~~~~-----------------------   96 (229)
                               +.+..                               ...++++++..+                       
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (670)
T 3ux8_A          413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV  492 (670)
T ss_dssp             CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred             cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence                     00000                               001111111111                       


Q ss_pred             ---------CCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhcCCC---eEEEe
Q 027067           97 ---------KEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAIDRP---IWLLD  163 (229)
Q Consensus        97 ---------~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~---illlD  163 (229)
                               +..+|+.||+.++.... ...+..+.+..+++.. ..++++.+|||||||||+|||||+.+|+   +||||
T Consensus       493 ~~~~~~~~~~~~ltv~e~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllD  571 (670)
T 3ux8_A          493 TYKGKNIAEVLDMTVEDALDFFASIP-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILD  571 (670)
T ss_dssp             CBTTBCHHHHHTSBHHHHHHHTTTCH-HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEE
T ss_pred             eecCCCHHHHhhCCHHHHHHHHHHhh-hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEe
Confidence                     12468888887643211 1134557788899864 4689999999999999999999999874   99999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+|||+.+++.+.+++++++++|.|||+||||++.+.. +|
T Consensus       572 EPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~-~d  613 (670)
T 3ux8_A          572 EPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKT-AD  613 (670)
T ss_dssp             STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-CS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHh-CC
Confidence            9999999999999999999998889999999999988753 44

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=100.00  E-value=4.1e-35  Score=284.30  Aligned_cols=192  Identities=23%  Similarity=0.263  Sum_probs=140.6

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHH-HHCCC-------CC-----------------
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRM-LAGFS-------KP-----------------   62 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~-i~Gl~-------~p-----------------   62 (229)
                      .+.|+++|+++     .+|+||||+|++||++||+|+||||||||+++ |+|++       +|                 
T Consensus       500 ~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~  574 (842)
T 2vf7_A          500 AGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA  574 (842)
T ss_dssp             SCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred             CceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence            45799999985     26999999999999999999999999999996 76543       23                 


Q ss_pred             -Ccc-------EEEEcCEeCCCCch---------hhhhh---------hcceEee----------------------ccc
Q 027067           63 -SAG-------EILWNGHDITQSGI---------FHQYK---------LQLNWLS----------------------LKD   94 (229)
Q Consensus        63 -~~G-------~I~~~g~~~~~~~~---------~~~~~---------~~~~~~~----------------------~~~   94 (229)
                       .+|       .|.+++.++.....         +...+         +..+|.+                      .+.
T Consensus       575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~  654 (842)
T 2vf7_A          575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL  654 (842)
T ss_dssp             EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred             cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence             356       67888877643211         01111         1111111                      111


Q ss_pred             ccC------------------------CCCCH--------HHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCCh
Q 027067           95 AVK------------------------EKFTV--------LDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSM  141 (229)
Q Consensus        95 ~~~------------------------~~~tv--------~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg  141 (229)
                      .++                        ...++        .+++.++.... ...++.++++.++|.. ..++++.+|||
T Consensus       655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~-~~~~~~~~L~~~gL~~~~l~~~~~~LSG  733 (842)
T 2vf7_A          655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADES-AIFRALDTLREVGLGYLRLGQPATELSG  733 (842)
T ss_dssp             CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSH-HHHHHHHHHHHTTCTTSBTTCCGGGCCH
T ss_pred             hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcch-HHHHHHHHHHHcCCCcccccCCcccCCH
Confidence            111                        12344        44433321110 1124567899999986 46899999999


Q ss_pred             hHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          142 GQRKRLQLARLLAID---RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       142 GqkqRv~lAral~~~---p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||+||++|+.+   |++|||||||+|||+..++.+.+++++++++|.|||+||||++++ ..+|
T Consensus       734 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD  800 (842)
T 2vf7_A          734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD  800 (842)
T ss_dssp             HHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC
Confidence            999999999999996   799999999999999999999999999988899999999999998 5554

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-38  Score=289.72  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=142.8

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-E-EEEcCEeCCCCchhhhhhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-E-ILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~-I~~~g~~~~~~~~~~~~~~   85 (229)
                      .++++++||+++|+      ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.          .++
T Consensus       116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~----------~~~  179 (460)
T 2npi_A          116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD----------PQQ  179 (460)
T ss_dssp             CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----------TTS
T ss_pred             cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----------ccC
Confidence            56899999998885      79999999999999999999999999999999999999 9 999982          134


Q ss_pred             cceEeecccc---cCCCCCHHHhHHHHHHh-cC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH--HhcCC
Q 027067           86 QLNWLSLKDA---VKEKFTVLDNVQWFEVL-EG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL--LAIDR  157 (229)
Q Consensus        86 ~~~~~~~~~~---~~~~~tv~e~l~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra--l~~~p  157 (229)
                      ++++++|+..   +...+|+.||+ ++... .+  ....+.++++.+|+.+..+  +.+|||||||||+||||  |+.+|
T Consensus       180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p  256 (460)
T 2npi_A          180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDP  256 (460)
T ss_dssp             CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCc
Confidence            6788888774   34456898888 54321 11  1233456778889887766  89999999999999999  99999


Q ss_pred             Ce----EEEeC-CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChh------hHHhhhc
Q 027067          158 PI----WLLDE-PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPI------QIEDAMN  206 (229)
Q Consensus       158 ~i----lllDE-Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~------~~~~~~~  206 (229)
                      ++    ||||| ||++||+. .+.+.+++++   .+.|+|+|||+.+      ++...+|
T Consensus       257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~d  312 (460)
T 2npi_A          257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGP  312 (460)
T ss_dssp             HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHH
T ss_pred             ccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcc
Confidence            99    99999 99999999 6666666554   3789999999987      5555555

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=100.00  E-value=2.6e-34  Score=280.02  Aligned_cols=191  Identities=25%  Similarity=0.311  Sum_probs=141.3

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-CCC-------CCCcc-------------EE
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA-GFS-------KPSAG-------------EI   67 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~-------~p~~G-------------~I   67 (229)
                      +.|+++|++.     ..|+||||+|++|+++||+|+||||||||+++|+ |.+       .+..|             .|
T Consensus       628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I  702 (972)
T 2r6f_A          628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI  702 (972)
T ss_dssp             CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred             eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence            5799999862     4699999999999999999999999999999854 221       12233             37


Q ss_pred             EEcCEeCCCCc---h------hhh---------hhhcceEeecccccC--------------------------------
Q 027067           68 LWNGHDITQSG---I------FHQ---------YKLQLNWLSLKDAVK--------------------------------   97 (229)
Q Consensus        68 ~~~g~~~~~~~---~------~~~---------~~~~~~~~~~~~~~~--------------------------------   97 (229)
                      .+++.++....   .      +..         ..+..+|+++...+.                                
T Consensus       703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c  782 (972)
T 2r6f_A          703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC  782 (972)
T ss_dssp             EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred             EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence            78887764211   0      000         012245554432221                                


Q ss_pred             --------------C--------CCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHh
Q 027067           98 --------------E--------KFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        98 --------------~--------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                                    .        .+|+.|++.++.... ...+..++++.++|.. ..++++.+|||||||||+||++|+
T Consensus       783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~-~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~  861 (972)
T 2r6f_A          783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP-KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELH  861 (972)
T ss_dssp             TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH-HHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHS
T ss_pred             ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch-hHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHh
Confidence                          0        346666665532111 1123457899999986 689999999999999999999999


Q ss_pred             cCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          155 IDR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       155 ~~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+|   ++|||||||+|||+..++.+.++|++++++|.|||+||||++++. .+|
T Consensus       862 ~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~aD  915 (972)
T 2r6f_A          862 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TAD  915 (972)
T ss_dssp             SCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCS
T ss_pred             cCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hCC
Confidence            875   999999999999999999999999999888999999999999874 444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=100.00  E-value=6.8e-34  Score=256.22  Aligned_cols=181  Identities=15%  Similarity=0.149  Sum_probs=127.8

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC--------------------------------------CC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK--------------------------------------PS   63 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--------------------------------------p~   63 (229)
                      +..++++++|++.+| +++|+|||||||||||++|+++..                                      +.
T Consensus        47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~  125 (415)
T 4aby_A           47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG  125 (415)
T ss_dssp             EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred             cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence            446899999999999 999999999999999999977764                                      45


Q ss_pred             ccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc-------------------------C----
Q 027067           64 AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE-------------------------G----  114 (229)
Q Consensus        64 ~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~-------------------------~----  114 (229)
                      +|+++++|++++...........+.+++|.+.++.. +..+...+.....                         .    
T Consensus       126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~  204 (415)
T 4aby_A          126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESS  204 (415)
T ss_dssp             CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             ceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            789999999986432222222336778887655432 3322222110000                         0    


Q ss_pred             ------------------------------------ccccHHHHHHHhCCChh-----------------------hc--
Q 027067          115 ------------------------------------KQGNSLPALELMGLGRL-----------------------AK--  133 (229)
Q Consensus       115 ------------------------------------~~~~~~~~l~~~~l~~~-----------------------~~--  133 (229)
                                                          ....+.+.++.+++...                       ..  
T Consensus       205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  284 (415)
T 4aby_A          205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN  284 (415)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence                                                00011223334444220                       01  


Q ss_pred             -----CCCCC-CChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          134 -----EKARM-LSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       134 -----~~~~~-LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                           +++.. |||||||||+||++|+.+|  ++|||||||++||+..++.+.++|+++. +|.|||+|||+++.+. .+
T Consensus       285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~-~~  362 (415)
T 4aby_A          285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAA-RA  362 (415)
T ss_dssp             SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHT-TC
T ss_pred             CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHh-hc
Confidence                 22222 6999999999999999999  9999999999999999999999999987 5899999999997664 44


Q ss_pred             c
Q 027067          206 N  206 (229)
Q Consensus       206 ~  206 (229)
                      |
T Consensus       363 d  363 (415)
T 4aby_A          363 H  363 (415)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=100.00  E-value=1.8e-32  Score=267.71  Aligned_cols=188  Identities=27%  Similarity=0.422  Sum_probs=135.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHH---------HHHHCCCCCCc------c------EEE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFL---------RMLAGFSKPSA------G------EIL   68 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl---------~~i~Gl~~p~~------G------~I~   68 (229)
                      .+++++++     ...|+||||+|++|++++|+|+||||||||+         +.+.|...+..      |      .+.
T Consensus       589 ~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~  663 (916)
T 3pih_A          589 SLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIA  663 (916)
T ss_dssp             EEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEE
T ss_pred             eEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEe
Confidence            35555543     4579999999999999999999999999997         45555544332      2      244


Q ss_pred             EcCEeCCCCc---------hhhhh-------------------------------hhcceEeecccccCC----------
Q 027067           69 WNGHDITQSG---------IFHQY-------------------------------KLQLNWLSLKDAVKE----------   98 (229)
Q Consensus        69 ~~g~~~~~~~---------~~~~~-------------------------------~~~~~~~~~~~~~~~----------   98 (229)
                      ++..++....         .+...                               ....+++.++..+++          
T Consensus       664 idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~  743 (916)
T 3pih_A          664 IDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCK  743 (916)
T ss_dssp             ECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTT
T ss_pred             eccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccccc
Confidence            4443332210         00000                               012345544443333          


Q ss_pred             ----------------------CCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           99 ----------------------KFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        99 ----------------------~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                                            .+|+.|++.++.... ...+..++++.+||.. ..++++.+|||||||||+|||||+.
T Consensus       744 g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~-~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~  822 (916)
T 3pih_A          744 GKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIP-SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRK  822 (916)
T ss_dssp             TSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCH-HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTS
T ss_pred             ccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcch-hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhh
Confidence                                  246666666543211 1234567899999964 3688999999999999999999998


Q ss_pred             CC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DR---PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p---~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|   ++|||||||+|||+..++.+.++|++++++|.|||+||||++.+..
T Consensus       823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~  873 (916)
T 3pih_A          823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN  873 (916)
T ss_dssp             CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            76   7999999999999999999999999998889999999999998865

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.97  E-value=5.2e-36  Score=248.39  Aligned_cols=150  Identities=13%  Similarity=0.118  Sum_probs=103.9

Q ss_pred             EEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC
Q 027067           18 CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK   97 (229)
Q Consensus        18 ~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (229)
                      ++|+++.+|+++    ++||+++|+||||||||||+|+|+|+ +|++|+|..  .++... . ...+..++|++|++   
T Consensus         8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~-~-~~~~~~ig~v~q~~---   75 (208)
T 3b85_A            8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRP-A-VEAGEKLGFLPGTL---   75 (208)
T ss_dssp             CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEEC-S-CCTTCCCCSSCC-----
T ss_pred             CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCC-c-hhhhcceEEecCCH---
Confidence            356777899996    89999999999999999999999999 999999943  222211 0 12345789998865   


Q ss_pred             CCCCHHHhH-HHHH----HhcC--ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067           98 EKFTVLDNV-QWFE----VLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus        98 ~~~tv~e~l-~~~~----~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD  170 (229)
                           .||+ .+..    ....  ....+.++++. ++             ||||||+|||||+.+|++|||||||++  
T Consensus        76 -----~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~--  134 (208)
T 3b85_A           76 -----NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT--  134 (208)
T ss_dssp             ---------CTTTHHHHHHHTTTSCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC--
T ss_pred             -----HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEEEeCCccc--
Confidence                 3343 2211    1111  11223344443 32             999999999999999999999999999  


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          171 YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       171 ~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                        +++.+.+++.++ ++|+||| +|||+++++..
T Consensus       135 --~~~~l~~~l~~l-~~g~tii-vtHd~~~~~~~  164 (208)
T 3b85_A          135 --TPAQMKMFLTRL-GFGSKMV-VTGDITQVDLP  164 (208)
T ss_dssp             --CHHHHHHHHTTB-CTTCEEE-EEEC-------
T ss_pred             --cHHHHHHHHHHh-cCCCEEE-EECCHHHHhCc
Confidence              778888888887 5688999 99999887763

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.97  E-value=3e-33  Score=224.35  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=102.4

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccccc-CCCCCHHHhH
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAV-KEKFTVLDNV  106 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~tv~e~l  106 (229)
                      ||||++++||+++|+||||||||||+|++.+      |...+...         ..   .+++++++.- ...-++++.+
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d---------~~---~g~~~~~~~~~~~~~~~~~~~   62 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSD---------FC---RGLMSDDENDQTVTGAAFDVL   62 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHH---------HH---HHHHCSSTTCGGGHHHHHHHH
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccH---------HH---HHHhcCcccchhhHHHHHHHH
Confidence            6899999999999999999999999998653      21111110         01   1333333210 0000112221


Q ss_pred             HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH--------------
Q 027067          107 QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD--------------  172 (229)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~--------------  172 (229)
                      ..          ........+.....+ .....|+|||||++||||++.+|++|+|||||++||+.              
T Consensus        63 ~~----------~~~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi  131 (171)
T 4gp7_A           63 HY----------IVSKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVI  131 (171)
T ss_dssp             HH----------HHHHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHH
T ss_pred             HH----------HHHHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHH
Confidence            11          111222345443333 34566999999999999999999999999999999999              


Q ss_pred             --HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          173 --GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       173 --~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                        .+..+.+.++.++++|.|+|++|||+++++.+
T Consensus       132 ~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~  165 (171)
T 4gp7_A          132 RKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV  165 (171)
T ss_dssp             HHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred             HHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence              55888888888877799999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.97  E-value=3.6e-33  Score=252.50  Aligned_cols=166  Identities=16%  Similarity=0.134  Sum_probs=134.3

Q ss_pred             eeeeeeeeEEEeCCc--------------------EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh
Q 027067           23 QQILRHVNISIHDGG--------------------ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge--------------------~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~   82 (229)
                      +.+|++|||+|++|+                    ++||+||||||||||+|+|+|+++|++|+|.++|.+++.      
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~------  109 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTM------  109 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----C------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecce------
Confidence            468999999999999                    999999999999999999999999999999998876531      


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh--HHHHHHHHHHHhc-----
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG--QRKRLQLARLLAI-----  155 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG--qkqRv~lAral~~-----  155 (229)
                          .++++|.+ .++.+++.|++.+..    ......++++.+++.+.. ..+. ||+|  |+||++||+||+.     
T Consensus       110 ----~~~v~q~~-~~~~ltv~D~~g~~~----~~~~~~~~L~~~~L~~~~-~~~~-lS~G~~~kqrv~la~aL~~~~~p~  178 (413)
T 1tq4_A          110 ----ERHPYKHP-NIPNVVFWDLPGIGS----TNFPPDTYLEKMKFYEYD-FFII-ISATRFKKNDIDIAKAISMMKKEF  178 (413)
T ss_dssp             ----CCEEEECS-SCTTEEEEECCCGGG----SSCCHHHHHHHTTGGGCS-EEEE-EESSCCCHHHHHHHHHHHHTTCEE
T ss_pred             ----eEEecccc-ccCCeeehHhhcccc----hHHHHHHHHHHcCCCccC-CeEE-eCCCCccHHHHHHHHHHHhcCCCe
Confidence                15677764 466788888876532    234678899999987543 3334 9999  9999999999999     


Q ss_pred             -----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----cEEEEEeCChhh--HHhhh
Q 027067          156 -----DRPIWLLDEPSVALDYDGVRLLEYIIAEHR-----KKG----GIVIVATHLPIQ--IEDAM  205 (229)
Q Consensus       156 -----~p~illlDEPt~~LD~~~~~~l~~~l~~~~-----~~g----~tii~vtH~~~~--~~~~~  205 (229)
                           +|+++++||||++||+..++.+.+.++++.     +.|    .+|+++||+++.  +++.+
T Consensus       179 ~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~  244 (413)
T 1tq4_A          179 YFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLM  244 (413)
T ss_dssp             EEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHH
T ss_pred             EEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHH
Confidence                 999999999999999999988888888874     332    578899998776  55544

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.96  E-value=2.6e-30  Score=226.79  Aligned_cols=73  Identities=30%  Similarity=0.401  Sum_probs=63.6

Q ss_pred             hcCCCCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          132 AKEKARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      .++++.+||+|||||++||+||+    .+|++|||||||++||+..++.+.++++++. ++.+||++||+++ +.+.+|
T Consensus       213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~-~~~~~d  289 (322)
T 1e69_A          213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI-VMEAAD  289 (322)
T ss_dssp             CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT-GGGGCS
T ss_pred             ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH-HHhhCc
Confidence            46678899999999999999997    6889999999999999999999999999884 4789999999964 344444

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.96  E-value=6.5e-29  Score=221.67  Aligned_cols=69  Identities=19%  Similarity=0.238  Sum_probs=65.0

Q ss_pred             cCCCCCCChhHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          133 KEKARMLSMGQRKRLQLARLLA------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       133 ~~~~~~LSgGqkqRv~lAral~------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ++++.+|||||||||+||+||+      .+|++|||||||++||+.+++.+.+++..+++.|.|||+||||++.+
T Consensus       274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~  348 (365)
T 3qf7_A          274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS  348 (365)
T ss_dssp             EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred             CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence            5688999999999999999999      79999999999999999999999999999988899999999999874

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.95  E-value=5.4e-30  Score=207.29  Aligned_cols=141  Identities=11%  Similarity=0.084  Sum_probs=101.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG  117 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  117 (229)
                      +++|+||||||||||+|+|+|++.     |.++|.+..... .......++|++|+.      ++.+++ + ....    
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~-~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----   63 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR-DPETKKRTGFRIITT------EGKKKI-F-SSKF----   63 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC-------CCEEEEEET------TCCEEE-E-EETT----
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc-cccccceeEEEeecC------cHHHHH-H-Hhhc----
Confidence            689999999999999999999985     455665432110 002345688888764      222332 1 0000    


Q ss_pred             cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCcE
Q 027067          118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARL-----LAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGGI  190 (229)
Q Consensus       118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAra-----l~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~t  190 (229)
                              +.-....++++.+||||||||++||+|     ++.+|+++||||  ||++||+..++.+.+++.+   .+.|
T Consensus        64 --------~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~  132 (178)
T 1ye8_A           64 --------FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVN  132 (178)
T ss_dssp             --------CCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSE
T ss_pred             --------CCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCe
Confidence                    000135678899999999999999996     999999999999  9999999999888888754   4677


Q ss_pred             EEEEeC---ChhhHHhhhcc
Q 027067          191 VIVATH---LPIQIEDAMNL  207 (229)
Q Consensus       191 ii~vtH---~~~~~~~~~~~  207 (229)
                      +|++||   +.+.++..++.
T Consensus       133 ~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A          133 VVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             EEEECCSSCCSHHHHHHHTC
T ss_pred             EEEEEccCCCchHHHHHHhc
Confidence            888885   88888887764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.95  E-value=4.1e-30  Score=224.10  Aligned_cols=158  Identities=15%  Similarity=0.143  Sum_probs=125.8

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccc-cCCC
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDA-VKEK   99 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~   99 (229)
                      ++++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+  +.+++|++|++. +++.
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~  169 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA  169 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence            4678999999999999999999999999999999999999999999987653211   112  347899999887 8888


Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHH
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLL  177 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l  177 (229)
                      .+++|++.+.... ...   ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|| ||+|||+..+.  
T Consensus       170 ~~v~e~l~~~~~~-~~d---~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~--  239 (302)
T 3b9q_A          170 TVLSKAVKRGKEE-GYD---VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--  239 (302)
T ss_dssp             HHHHHHHHHHHHT-TCS---EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred             HHHHHHHHHHHHc-CCc---chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--
Confidence            8999999875321 111   124566777777778889999   999999999999999  99999 99999998542  


Q ss_pred             HHHHHHHH-hCCcEEEEEeCC
Q 027067          178 EYIIAEHR-KKGGIVIVATHL  197 (229)
Q Consensus       178 ~~~l~~~~-~~g~tii~vtH~  197 (229)
                          +.++ +.|.|+|++||.
T Consensus       240 ----~~~~~~~g~t~iiiThl  256 (302)
T 3b9q_A          240 ----REFNEVVGITGLILTKL  256 (302)
T ss_dssp             ----HHHHHHTCCCEEEEECC
T ss_pred             ----HHHHHhcCCCEEEEeCC
Confidence                3343 458999999994

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.94  E-value=8.8e-31  Score=215.61  Aligned_cols=167  Identities=13%  Similarity=0.043  Sum_probs=113.1

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      ..+++|  .+|++||+++|+||||||||||+|+|+|+++.    |.+++....... ....+..++|++|++..++.+++
T Consensus         9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~~   81 (207)
T 1znw_A            9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAP-RPGEVDGVDYHFIDPTRFQQLID   81 (207)
T ss_dssp             ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCC-CTTCCBTTTBEECCHHHHHHHHH
T ss_pred             CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCC-cccccCCCeeEecCHHHHHHHHh
Confidence            457777  79999999999999999999999999999863    444432211111 11224568999998877776676


Q ss_pred             HHhHHHH----H--HhcCc-c----ccHHHH------HHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067          103 LDNVQWF----E--VLEGK-Q----GNSLPA------LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus       103 ~e~l~~~----~--~~~~~-~----~~~~~~------l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      .+++..+    .  ..++. .    ..+.+.      ++.+|+....++++.+||           +|+.+|++++||||
T Consensus        82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~~LDep  150 (207)
T 1znw_A           82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQDLQAR  150 (207)
T ss_dssp             TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHHHHHHH
T ss_pred             cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHHHHHHH
Confidence            6664311    1  11111 1    111222      445566666788888898           99999999999999


Q ss_pred             CCCC----CHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVAL----DYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~L----D~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+++    |+..++.+.+++.++++ .|.|+|++|||++++...+|.
T Consensus       151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~  197 (207)
T 1znw_A          151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVS  197 (207)
T ss_dssp             HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHH
Confidence            9998    67788899999998864 589999999999999887763

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.94  E-value=3.7e-31  Score=220.15  Aligned_cols=177  Identities=11%  Similarity=0.023  Sum_probs=113.1

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFT  101 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  101 (229)
                      ....|+||||+|++|++++|+||||||||||+++|+|++ |  |+|.+ |.++.........+..++|++|++.+++.++
T Consensus         9 ~~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~   84 (218)
T 1z6g_A            9 HHSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL   84 (218)
T ss_dssp             -------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred             ccccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence            455799999999999999999999999999999999999 6  99999 7765432211123456788888766554332


Q ss_pred             -HHHhHH---HHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH-----HHHHhcCCCeEEEeCCCCCCCH
Q 027067          102 -VLDNVQ---WFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL-----ARLLAIDRPIWLLDEPSVALDY  171 (229)
Q Consensus       102 -v~e~l~---~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l-----Aral~~~p~illlDEPt~~LD~  171 (229)
                       ..+++.   +....++. ...+.++++..... ..+   .+|||||+||+++     |++|+.+|++++|||||+++|.
T Consensus        85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~  160 (218)
T 1z6g_A           85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT  160 (218)
T ss_dssp             HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred             hccchhhhhhcccccCCCcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence             111111   10111111 12234455543321 222   5899999999999     8999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh-------CCcEEEEEeCChhhHHhhhc
Q 027067          172 DGVRLLEYIIAEHRK-------KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       172 ~~~~~l~~~l~~~~~-------~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+.+.+.+.+....+       .+.+.|+++|+++++...++
T Consensus       161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~  202 (218)
T 1z6g_A          161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK  202 (218)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence            877777766665432       45788999999887766543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.94  E-value=6.8e-29  Score=220.92  Aligned_cols=157  Identities=15%  Similarity=0.148  Sum_probs=126.3

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccc-cCCCC
Q 027067           27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDA-VKEKF  100 (229)
Q Consensus        27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~-~~~~~  100 (229)
                      ..+||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+  +.+++|++|++. +++..
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~  227 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT  227 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence            468999999999999999999999999999999999999999999987653211   112  357899999887 78888


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLE  178 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~  178 (229)
                      ++++++.+.... ...   ..+++.+|+.+..++++.+||   |||++||||++.+|+  +|+|| ||+|||+..+.   
T Consensus       228 tv~e~l~~~~~~-~~d---~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---  296 (359)
T 2og2_A          228 VLSKAVKRGKEE-GYD---VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---  296 (359)
T ss_dssp             HHHHHHHHHHHT-TCS---EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---
T ss_pred             hHHHHHHHHHhC-CCH---HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---
Confidence            999999875421 111   124556777766777888999   999999999999999  99999 99999998652   


Q ss_pred             HHHHHHH-hCCcEEEEEeCC
Q 027067          179 YIIAEHR-KKGGIVIVATHL  197 (229)
Q Consensus       179 ~~l~~~~-~~g~tii~vtH~  197 (229)
                         +.+. +.|.|+|++||.
T Consensus       297 ---~~~~~~~g~t~iiiThl  313 (359)
T 2og2_A          297 ---REFNEVVGITGLILTKL  313 (359)
T ss_dssp             ---HHHHHHTCCCEEEEESC
T ss_pred             ---HHHHHhcCCeEEEEecC
Confidence               2333 358999999994

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.94  E-value=1.2e-29  Score=217.95  Aligned_cols=150  Identities=15%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG  117 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  117 (229)
                      .++|+||||||||||+|+|+|+..|++|+|.++|+++...    .....+++++|++.+++.+||.||+.++....... 
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~----~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-   78 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT----VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-   78 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC------------CCCC----CSCCEEEESCC----CCEEEEECCCC--CCSBCTT-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc----eeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-
Confidence            4899999999999999999999999999999999887542    13457899999999999999999988754322111 


Q ss_pred             cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                       ..+.+..+....+.+..+.+||||||||+++|||++.   ++++|||+++||+...    ++++.+++. .+||++.|.
T Consensus        79 -~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~~~-~~vI~Vi~K  149 (270)
T 3sop_A           79 -CWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLSKV-VNIIPVIAK  149 (270)
T ss_dssp             -CSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHHTT-SEEEEEETT
T ss_pred             -HHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHHhc-CcEEEEEec
Confidence             1111222222456677788999999999999999887   9999999999999874    344555555 788888887


Q ss_pred             hhhH
Q 027067          198 PIQI  201 (229)
Q Consensus       198 ~~~~  201 (229)
                      .+.+
T Consensus       150 ~D~l  153 (270)
T 3sop_A          150 ADTM  153 (270)
T ss_dssp             GGGS
T ss_pred             cccC
Confidence            5533

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.93  E-value=1.3e-27  Score=210.56  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=95.7

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD  104 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e  104 (229)
                      +++++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|.+....   ...+..+++++             
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~---~~~~~~i~~~~-------------  223 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF---KHHKNYTQLFF-------------  223 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC---SSCSSEEEEEC-------------
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc---ccchhEEEEEe-------------
Confidence            78999999999999999999999999999999999999999999998642111   00111222211             


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH  184 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~  184 (229)
                                            +             |||+||++||+||..+|++||+||||+.       .+.+.++.+
T Consensus       224 ----------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~  261 (330)
T 2pt7_A          224 ----------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVL  261 (330)
T ss_dssp             ----------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHH
T ss_pred             ----------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHH
Confidence                                  0             8999999999999999999999999982       245566666


Q ss_pred             HhCCcEEEEEeCChhhHHhhh
Q 027067          185 RKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       185 ~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ...+.|+|++||+.+ +.+++
T Consensus       262 ~~g~~tvi~t~H~~~-~~~~~  281 (330)
T 2pt7_A          262 CSGHKGTLTTLHAGS-SEEAF  281 (330)
T ss_dssp             HTTCCCEEEEEECSS-HHHHH
T ss_pred             hcCCCEEEEEEcccH-HHHHh
Confidence            543457999999987 44443

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.92  E-value=2e-26  Score=227.98  Aligned_cols=158  Identities=18%  Similarity=0.186  Sum_probs=118.4

Q ss_pred             CCcEEEEe-----EEEEe-CCeeeeeeeeEEEeC-------CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067            8 LPRLLLKN-----VSCMR-NAQQILRHVNISIHD-------GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus         8 ~~~l~l~~-----l~~~~-~~~~iL~~vsl~i~~-------Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .++|+++|     |++.| ++..+++|++|++.+       |++++|+||||||||||||++ |++.+            
T Consensus       748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------  814 (1022)
T 2o8b_B          748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------  814 (1022)
T ss_dssp             CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred             CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence            45799999     99999 778899999999987       999999999999999999999 99863            


Q ss_pred             CCCchhhhhhhcce-EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           75 TQSGIFHQYKLQLN-WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                               ..++| |+|++..   .+++.+++..                .+|+.+...+..+++|+++++ +++|+++
T Consensus       815 ---------~aqiG~~Vpq~~~---~l~v~d~I~~----------------rig~~d~~~~~~stf~~em~~-~a~al~l  865 (1022)
T 2o8b_B          815 ---------MAQMGCYVPAEVC---RLTPIDRVFT----------------RLGASDRIMSGESTFFVELSE-TASILMH  865 (1022)
T ss_dssp             ---------HHTTTCCEESSEE---EECCCSBEEE----------------ECC---------CHHHHHHHH-HHHHHHH
T ss_pred             ---------HhheeEEeccCcC---CCCHHHHHHH----------------HcCCHHHHhhchhhhHHHHHH-HHHHHHh
Confidence                     12455 7887653   3456555411                134444444556788888775 9999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhcc
Q 027067          154 AIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~-~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~~  207 (229)
                      +.+|+++||||||+|+|+.. ...++.+++.+.++ |.++|++||+.+.+..+++.
T Consensus       866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~  921 (1022)
T 2o8b_B          866 ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN  921 (1022)
T ss_dssp             CCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred             CCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence            99999999999999999986 46678889888776 89999999999998887653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.92  E-value=1e-29  Score=222.52  Aligned_cols=163  Identities=11%  Similarity=0.006  Sum_probs=123.9

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEE-----------------------EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNIS-----------------------IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~-----------------------i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      ..|+++||++.|+  ++++++++.                       +++|+++||+||||||||||+++|+|+++|+.|
T Consensus        42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            4688999999884  566766664                       899999999999999999999999999999765


Q ss_pred             EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhc--C--ccccHHHHHHHhCCChhhcCCCCCCCh
Q 027067           66 EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLE--G--KQGNSLPALELMGLGRLAKEKARMLSM  141 (229)
Q Consensus        66 ~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~LSg  141 (229)
                      .                  ..+++++|+..+++. |+.||+.+.....  .  ......+.++.++ ....+.++.+|||
T Consensus       120 ~------------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~  179 (312)
T 3aez_A          120 H------------------PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSH  179 (312)
T ss_dssp             C------------------CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEET
T ss_pred             C------------------CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-CCcccCCcccCCh
Confidence            3                  247889998888877 9999976532111  0  1123556777777 5455677889999


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ||+||+++|+|++.+|+|||+|||+..+|+...        .+.+.=-.+|+++|+.+..
T Consensus       180 G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~--------~l~~~~D~~I~V~a~~~~~  231 (312)
T 3aez_A          180 LHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL--------MVSDLFDFSLYVDARIEDI  231 (312)
T ss_dssp             TTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC--------CGGGGCSEEEEEEECHHHH
T ss_pred             hhhhhhhhHHHhccCCCEEEECCccccCCcchH--------HHHHhcCcEEEEECCHHHH
Confidence            999999999999999999999999999985211        1122112457788887664

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.92  E-value=2.8e-28  Score=222.33  Aligned_cols=171  Identities=12%  Similarity=0.083  Sum_probs=133.8

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCE---eCCCCc----hh
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH---DITQSG----IF   80 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~---~~~~~~----~~   80 (229)
                      ++++++++++.|+ +.++|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+   ++....    ..
T Consensus       130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~  208 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP  208 (438)
T ss_dssp             CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred             CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence            5799999999997 78899999 999999999999999999999999999999999999999997   442210    01


Q ss_pred             hhhhhcceEeecc-cccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCe
Q 027067           81 HQYKLQLNWLSLK-DAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPI  159 (229)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~i  159 (229)
                      ...++.++|++|. ..+++.+++.+|+.+.........        -....+.+ .+..||+|| |||+||   +.+|++
T Consensus       209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~--------~~v~~~ld-~l~~lS~g~-qrvslA---l~~p~~  275 (438)
T 2dpy_A          209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG--------QHVLLIMD-SLTRYAMAQ-REIALA---IGEPPA  275 (438)
T ss_dssp             HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT--------CEEEEEEE-CHHHHHHHH-HHHHHH---TTCCCC
T ss_pred             cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC--------CCHHHHHH-hHHHHHHHH-HHHHHH---hCCCcc
Confidence            1245678999984 556677788888876543221100        00011122 267899999 999999   889988


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----EEEEEeCChh
Q 027067          160 WLLDEPSVALDYDGVRLLEYIIAEHRK---K-GG-----IVIVATHLPI  199 (229)
Q Consensus       160 lllDEPt~~LD~~~~~~l~~~l~~~~~---~-g~-----tii~vtH~~~  199 (229)
                            |+|||+.....+.+++.++.+   + |.     ||+++|||++
T Consensus       276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~  318 (438)
T 2dpy_A          276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ  318 (438)
T ss_dssp             ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC
T ss_pred             ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc
Confidence                  999999999999999988755   3 64     9999999985

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.92  E-value=2.6e-28  Score=226.98  Aligned_cols=171  Identities=13%  Similarity=0.096  Sum_probs=124.1

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeE-EEeCCcEEEEEcCCCccHHHHHHH--HHCCCCCCccEEEEcCEeCCCCchhhhhh
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNI-SIHDGGALVLTGTNGSGKSTFLRM--LAGFSKPSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~--i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      .++++.+++.+..++.++|++||| .|++|++++|+||||||||||+++  ++|+++|++|.|+++|++...  ......
T Consensus        10 ~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~--~~~~~~   87 (525)
T 1tf7_A           10 NNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQ--DIIKNA   87 (525)
T ss_dssp             ----CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH--HHHHHH
T ss_pred             CCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHH--HHHHHH
Confidence            456777778777778899999999 999999999999999999999999  789999999999999987321  112334


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ..++|++|++....+      +.+.. ... .....++++.+++.+..++.+.+||+||             |+++++||
T Consensus        88 ~~~g~~~q~~~~~~~------l~~~~-~~~-~~~~~~~l~~~~l~~~~~~~~~~LS~g~-------------~~~lilDe  146 (525)
T 1tf7_A           88 RSFGWDLAKLVDEGK------LFILD-ASP-DPEGQEVVGGFDLSALIERINYAIQKYR-------------ARRVSIDS  146 (525)
T ss_dssp             GGGTCCHHHHHHTTS------EEEEE-CCC-CSSCCSCCSSHHHHHHHHHHHHHHHHHT-------------CSEEEEEC
T ss_pred             HHcCCChHHhhccCc------EEEEe-cCc-ccchhhhhcccCHHHHHHHHHHHHHHcC-------------CCEEEECC
Confidence            567888876542211      10000 000 0111123344455555666667777764             78999999


Q ss_pred             CCCC-----CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          165 PSVA-----LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       165 Pt~~-----LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ||+.     +|+..++.+.++++.+++.|.|||++||+++++
T Consensus       147 ~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~  188 (525)
T 1tf7_A          147 VTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEY  188 (525)
T ss_dssp             STTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSS
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence            9984     688999999999999988899999999999875

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.92  E-value=9.2e-30  Score=221.90  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=100.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||++.|+ .++|+++||+|++|++++|+||||||||||+++|+|++   +|+|...                   
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~-------------------  157 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF-------------------  157 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG-------------------
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE-------------------
Confidence            488999999998 78999999999999999999999999999999999999   7998532                   


Q ss_pred             eecccccCCCCCHHH-hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           90 LSLKDAVKEKFTVLD-NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      ++|.+.++.. |+.+ |+.+..   .......+.++.+ +.+..+  +..||||||||   ||||+.+|+|||    |++
T Consensus       158 v~q~~~lf~~-ti~~~ni~~~~---~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~  223 (305)
T 2v9p_A          158 ANHKSHFWLA-SLADTRAALVD---DATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSN  223 (305)
T ss_dssp             GGTTSGGGGG-GGTTCSCEEEE---EECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred             ecCccccccc-cHHHHhhccCc---cccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence            2233333332 4554 554421   0111233445543 433344  88999999999   999999999999    999


Q ss_pred             CCHHHHHHHH
Q 027067          169 LDYDGVRLLE  178 (229)
Q Consensus       169 LD~~~~~~l~  178 (229)
                      ||+.+++.+.
T Consensus       224 LD~~~~~~i~  233 (305)
T 2v9p_A          224 IDVQAEDRYL  233 (305)
T ss_dssp             SCSTTCGGGG
T ss_pred             CCHHHHHHHH
Confidence            9999877664

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.91  E-value=2.8e-24  Score=189.67  Aligned_cols=74  Identities=32%  Similarity=0.363  Sum_probs=64.7

Q ss_pred             hcCCCCCCChhHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          132 AKEKARMLSMGQRK------RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       132 ~~~~~~~LSgGqkq------Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      .++++.+|||||||      |+++|+|++.+|++|||||||++||+..+..+.+++..+.+.|.|||+||||.+ +.+.+
T Consensus       242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~  320 (339)
T 3qkt_A          242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA  320 (339)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred             CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhC
Confidence            35678999999999      677888888999999999999999999999999999998777889999999964 45554


Q ss_pred             c
Q 027067          206 N  206 (229)
Q Consensus       206 ~  206 (229)
                      |
T Consensus       321 d  321 (339)
T 3qkt_A          321 D  321 (339)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.91  E-value=2.8e-26  Score=193.36  Aligned_cols=157  Identities=11%  Similarity=0.033  Sum_probs=103.7

Q ss_pred             eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067           20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK   99 (229)
Q Consensus        20 ~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
                      -+++++|+|+||++++|+++||+||||||||||+++|+|++    |.+.++           .....+++++++. +++.
T Consensus         9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~-----------~~~~~i~~v~~d~-~~~~   72 (245)
T 2jeo_A            9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE-----------QRQRKVVILSQDR-FYKV   72 (245)
T ss_dssp             --------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-----------GGGCSEEEEEGGG-GBCC
T ss_pred             CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-----------ccCCceEEEeCCc-Cccc
Confidence            46778999999999999999999999999999999999976    544443           1245688999884 7778


Q ss_pred             CCHHHhHHHHHHhcC---c-ccc---HHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067          100 FTVLDNVQWFEVLEG---K-QGN---SLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~---~-~~~---~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                      +++.+++.+......   . ...   ..+.++.  +.+..+.++..||+||+||+++ ++++.+|+++|+|||+...+..
T Consensus        73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~--l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~  149 (245)
T 2jeo_A           73 LTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKN--IVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE  149 (245)
T ss_dssp             CCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHH--HHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred             cCHhHhhhhhccCCCCCCcccccHHHHHHHHHH--HHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence            899998765432111   1 111   2334443  2344567789999999999988 6888999999999998888754


Q ss_pred             HHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       173 ~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                          +    ..+  .+.+|+++||+...+...+
T Consensus       150 ----l----~~~--~~~~i~v~th~~~~~~r~~  172 (245)
T 2jeo_A          150 ----I----RDM--FHLRLFVDTDSDVRLSRRV  172 (245)
T ss_dssp             ----H----HTT--CSEEEEEECCHHHHHHHHH
T ss_pred             ----H----HHh--cCeEEEEECCHHHHHHHHH
Confidence                1    111  3789999999855555443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.90  E-value=2.1e-26  Score=200.44  Aligned_cols=164  Identities=15%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC-CCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF-SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      +||+++|+++.++++++|+|      +|+||||||||||+++|+|. ..|++| |.++|.++... .   ....++++++
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-~---~~~~~~~~~q   70 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-V---QIEASTVEIE   70 (301)
T ss_dssp             ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------CEEEEC
T ss_pred             CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-c---eEeeEEEEec
Confidence            58899999999999999999      99999999999999999998 889999 88888776431 1   1234677887


Q ss_pred             ccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC-CCH
Q 027067           93 KDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA-LDY  171 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~-LD~  171 (229)
                      ...+...+++.|+..++..... .+........  +.+..++++.++|||||||+.+|||++    ++++||||++ ||+
T Consensus        71 ~~~~~~~ltv~Dt~g~~~~~~~-~e~~~~l~~~--l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~  143 (301)
T 2qnr_A           71 ERGVKLRLTVVDTPGYGDAINC-RDCFKTIISY--IDEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKP  143 (301)
T ss_dssp             ---CCEEEEEEEEC------------CTTHHHH--HHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCH
T ss_pred             CCCcccCcchhhhhhhhhhcCc-HHHHHHHHHH--HHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCH
Confidence            7777777888888766432211 0011111111  223456788999999999999999986    9999999985 999


Q ss_pred             HHHHHHHHHHHHHHhC-CcEEEEEeCChh
Q 027067          172 DGVRLLEYIIAEHRKK-GGIVIVATHLPI  199 (229)
Q Consensus       172 ~~~~~l~~~l~~~~~~-g~tii~vtH~~~  199 (229)
                      ...    ++++.+.+. +.++|+++||+.
T Consensus       144 ~~~----~~l~~l~~~~~iilV~~K~Dl~  168 (301)
T 2qnr_A          144 LDV----AFMKAIHNKVNIVPVIAKADTL  168 (301)
T ss_dssp             HHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred             HHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence            874    445555443 789999999974

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.90  E-value=6e-25  Score=204.34  Aligned_cols=153  Identities=13%  Similarity=0.097  Sum_probs=113.2

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccE--EEEcCEeCCCCchhhhhhhc
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE--ILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~--I~~~g~~~~~~~~~~~~~~~   86 (229)
                      .+++++++..|++ ..+|   +..|.+|++++|+||||||||||+++++|+..|+ |+  +++.+++..     .+    
T Consensus       257 ~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~~-----~~----  323 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEESR-----AQ----  323 (525)
T ss_dssp             CCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSCH-----HH----
T ss_pred             ccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCCH-----HH----
Confidence            3556666544432 2233   3489999999999999999999999999998875 64  344433210     01    


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                                     +.++..   .. +.  ...+ +...|+..+.+.++.+||+||+||+++|+++..+|++||+| ||
T Consensus       324 ---------------l~~~~~---~~-g~--~~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~  380 (525)
T 1tf7_A          324 ---------------LLRNAY---SW-GM--DFEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SL  380 (525)
T ss_dssp             ---------------HHHHHH---TT-SC--CHHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CH
T ss_pred             ---------------HHHHHH---Hc-CC--CHHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-Ch
Confidence                           111110   00 00  1112 33456666778889999999999999999999999999999 99


Q ss_pred             CCCCHH-----HHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          167 VALDYD-----GVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       167 ~~LD~~-----~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      ++||..     .++.+.++++.+++.|.|||++||+.
T Consensus       381 ~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~  417 (525)
T 1tf7_A          381 SALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD  417 (525)
T ss_dssp             HHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred             HHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence            999999     89999999999988899999999998

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=99.90  E-value=9.8e-24  Score=195.84  Aligned_cols=71  Identities=18%  Similarity=0.160  Sum_probs=64.8

Q ss_pred             CCCCCC-ChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          134 EKARML-SMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       134 ~~~~~L-SgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++.+| ||||+|||+||+||+.+|  ++|||||||+|||+.++..+.+++.++++ |.|||+|||+++.+.. +|
T Consensus       392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~-~d  465 (517)
T 4ad8_A          392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAAR-AH  465 (517)
T ss_dssp             CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHH-SS
T ss_pred             ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHh-CC
Confidence            456778 999999999999999999  99999999999999999999999999877 8999999999987764 44

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.90  E-value=1.4e-25  Score=198.88  Aligned_cols=171  Identities=13%  Similarity=0.080  Sum_probs=119.3

Q ss_pred             CcEEEEeEEEEeC-CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh------h
Q 027067            9 PRLLLKNVSCMRN-AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF------H   81 (229)
Q Consensus         9 ~~l~l~~l~~~~~-~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~------~   81 (229)
                      ++++++++++.|+ +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++......+      .
T Consensus        44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~  122 (347)
T 2obl_A           44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS  122 (347)
T ss_dssp             CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred             CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence            5799999999997 78899999 99999999999999999999999999999999999999988652110000      0


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCC-hhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG-RLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      .....+.++++.+     .+..+.+.......    ...+.+...+.. -..-..+..||+|| |||++|   +.+|++ 
T Consensus       123 ~~~~~v~~~~~~~-----~~~~~r~~~~~~~~----~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~-  188 (347)
T 2obl_A          123 TLSKCVLVVTTSD-----RPALERMKAAFTAT----TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV-  188 (347)
T ss_dssp             HHTTEEEEEECTT-----SCHHHHHHHHHHHH----HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC-
T ss_pred             hhhceEEEEECCC-----CCHHHHHHHHHHHH----HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc-
Confidence            1122344444321     12222221110000    000111111100 00014688999999 999999   688887 


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCChh
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRK--KGG-----IVIVATHLPI  199 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~--~g~-----tii~vtH~~~  199 (229)
                           |+|+|+.....+.++++++.+  .|.     ||+++|||++
T Consensus       189 -----t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~  229 (347)
T 2obl_A          189 -----RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN  229 (347)
T ss_dssp             -----BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC
T ss_pred             -----ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC
Confidence                 999999999999999998864  477     8999999987

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.89  E-value=9.2e-25  Score=186.56  Aligned_cols=134  Identities=18%  Similarity=0.194  Sum_probs=97.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .++++++++.    ++|+++|  +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....     ....+
T Consensus         5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-----~~~~~   73 (261)
T 2eyu_A            5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-----KHKKS   73 (261)
T ss_dssp             -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC-----CCSSS
T ss_pred             CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec-----CCcce
Confidence            3556677643    5899999  9999999999999999999999999999998 999999887653210     01112


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      +++|.                               .+++..      ..|      |++||+||..+|+++++||||  
T Consensus        74 ~v~q~-------------------------------~~gl~~------~~l------~~~la~aL~~~p~illlDEp~--  108 (261)
T 2eyu_A           74 IVNQR-------------------------------EVGEDT------KSF------ADALRAALREDPDVIFVGEMR--  108 (261)
T ss_dssp             EEEEE-------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEEEESCCC--
T ss_pred             eeeHH-------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEEEeCCCC--
Confidence            22210                               122221      122      899999999999999999999  


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                       |+.+...+   ++. .+.|.+|+++||+.+ +..++
T Consensus       109 -D~~~~~~~---l~~-~~~g~~vl~t~H~~~-~~~~~  139 (261)
T 2eyu_A          109 -DLETVETA---LRA-AETGHLVFGTLHTNT-AIDTI  139 (261)
T ss_dssp             -SHHHHHHH---HHH-HHTTCEEEEEECCSS-HHHHH
T ss_pred             -CHHHHHHH---HHH-HccCCEEEEEeCcch-HHHHH
Confidence             88875433   333 356899999999976 44443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.89  E-value=6.8e-24  Score=207.57  Aligned_cols=151  Identities=17%  Similarity=0.236  Sum_probs=102.3

Q ss_pred             cEEEEeEEEEe-------CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhh
Q 027067           10 RLLLKNVSCMR-------NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFH   81 (229)
Q Consensus        10 ~l~l~~l~~~~-------~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~   81 (229)
                      .+.+++...-.       +++.+++|+||++++|++++|+||||||||||||+++++.-. ..|                
T Consensus       640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g----------------  703 (918)
T 3thx_B          640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIG----------------  703 (918)
T ss_dssp             EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred             cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcC----------------
Confidence            46666655422       356799999999999999999999999999999999764211 001                


Q ss_pred             hhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           82 QYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                            .+++......   .+.+                .++..+++.+...+..+++|+||+|++.++++ +.+|+++|
T Consensus       704 ------~~vpa~~~~i---~~~d----------------~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlL  757 (918)
T 3thx_B          704 ------SYVPAEEATI---GIVD----------------GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVI  757 (918)
T ss_dssp             ------CCBSSSEEEE---ECCS----------------EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEE
T ss_pred             ------ccccchhhhh---hHHH----------------HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEE
Confidence                  1111110000   0000                01112333444456678999999999999999 89999999


Q ss_pred             EeCCCCCCCHHHHHHHH-HHHHHHHh-CCcEEEEEeCChhhHH
Q 027067          162 LDEPSVALDYDGVRLLE-YIIAEHRK-KGGIVIVATHLPIQIE  202 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~-~~l~~~~~-~g~tii~vtH~~~~~~  202 (229)
                      |||||+|||+.....+. .+++.+.+ .|.|+|++||+.+..+
T Consensus       758 LDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~  800 (918)
T 3thx_B          758 LDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE  800 (918)
T ss_dssp             EESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH
Confidence            99999999999777665 77777754 5899999999987654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.89  E-value=7.4e-24  Score=182.83  Aligned_cols=166  Identities=17%  Similarity=0.110  Sum_probs=106.2

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      +.++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+...    .+...++..+.+...    +
T Consensus        21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~----~~~~~r~~~~~~~~~----~   92 (296)
T 1cr0_A           21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV----EETAEDLIGLHNRVR----L   92 (296)
T ss_dssp             SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH----HHHHHHHHHHHTTCC----G
T ss_pred             CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCH----HHHHHHHHHHHcCCC----h
Confidence            35689999999999999999999999999999999999999888 77554433221    122222222222211    1


Q ss_pred             CHHHhHHHHHHhcCc-cccHHHHHHHhCCChhhcCCCCCCChhH-HHHHHHHHHHhcCCCeEEEeCCCC---C---CCH-
Q 027067          101 TVLDNVQWFEVLEGK-QGNSLPALELMGLGRLAKEKARMLSMGQ-RKRLQLARLLAIDRPIWLLDEPSV---A---LDY-  171 (229)
Q Consensus       101 tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq-kqRv~lAral~~~p~illlDEPt~---~---LD~-  171 (229)
                      ++.+++......... .....++++..++  .....+..+|.+| +||+. |+++..+|+++|+||||+   +   +|. 
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~  169 (296)
T 1cr0_A           93 RQSDSLKREIIENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER  169 (296)
T ss_dssp             GGCHHHHHHHHHHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred             hhccccccCCCCHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence            223333322111110 0111122221222  1334457899999 67776 999999999999999999   5   455 


Q ss_pred             HHHHHHHHHHHHHHh-CCcEEEEEeCCh
Q 027067          172 DGVRLLEYIIAEHRK-KGGIVIVATHLP  198 (229)
Q Consensus       172 ~~~~~l~~~l~~~~~-~g~tii~vtH~~  198 (229)
                      .....+.+.|+.+++ .|.|||++||+.
T Consensus       170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~  197 (296)
T 1cr0_A          170 KMIDNLMTKLKGFAKSTGVVLVVICHLK  197 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence            556678888888754 499999999995

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.88  E-value=5.4e-24  Score=205.25  Aligned_cols=144  Identities=21%  Similarity=0.224  Sum_probs=107.0

Q ss_pred             CcEEEEeEEEEe---CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcCEeCCCCchhhhhh
Q 027067            9 PRLLLKNVSCMR---NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus         9 ~~l~l~~l~~~~---~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      +.+++++...-.   +++.+++|+||+   |++++|+||||||||||||+|+|+.. ++.|.+.      ..      ..
T Consensus       549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa------~~  613 (765)
T 1ewq_A          549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA------EE  613 (765)
T ss_dssp             SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS------SE
T ss_pred             CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh------hc
Confidence            357777774333   456789999999   99999999999999999999999874 6777642      11      12


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--hcCCCeEEE
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--AIDRPIWLL  162 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--~~~p~illl  162 (229)
                      ..++++++   ++..+++.||+..                             .+|+|+++++.+|+++  +.+|+++||
T Consensus       614 ~~i~~v~~---i~~~~~~~d~l~~-----------------------------g~S~~~~e~~~la~il~~a~~p~LlLL  661 (765)
T 1ewq_A          614 AHLPLFDG---IYTRIGASDDLAG-----------------------------GKSTFMVEMEEVALILKEATENSLVLL  661 (765)
T ss_dssp             EEECCCSE---EEEECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEE
T ss_pred             cceeeHHH---hhccCCHHHHHHh-----------------------------cccHHHHHHHHHHHHHHhccCCCEEEE
Confidence            23455443   4555666665431                             3689999999999999  999999999


Q ss_pred             eCC---CCCCCHHHH-HHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          163 DEP---SVALDYDGV-RLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       163 DEP---t~~LD~~~~-~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      |||   |++||..+. ..+.+.+.+   .|.++|++||+.+...
T Consensus       662 DEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~  702 (765)
T 1ewq_A          662 DEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTA  702 (765)
T ss_dssp             ESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHT
T ss_pred             ECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHH
Confidence            999   999998875 456666654   5889999999987754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.88  E-value=2.1e-24  Score=188.15  Aligned_cols=151  Identities=15%  Similarity=0.148  Sum_probs=106.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh--hhcceEeecccccCCCCCHHHhHHHH
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY--KLQLNWLSLKDAVKEKFTVLDNVQWF  109 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~tv~e~l~~~  109 (229)
                      +|++++|+||||||||||+++|+|+++|++|+|.+.|.++......   ..+  +.++++++|.+..++..++++|+.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~  180 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM  180 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999997653211   111  35689999998888888999998764


Q ss_pred             HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 027067          110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRK-  186 (229)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~-  186 (229)
                      ... ...   ..+++..|+.+...+.+   +..++||++||||++.+|+  ++.|| |+++.      .+.+.+..+.+ 
T Consensus       181 ~~~-~~d---~~llDt~G~~~~~~~~~---~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~------~~~~~~~~~~~~  246 (304)
T 1rj9_A          181 KAR-GYD---LLFVDTAGRLHTKHNLM---EELKKVKRAIAKADPEEPKEVWLVLD-AVTGQ------NGLEQAKKFHEA  246 (304)
T ss_dssp             HHH-TCS---EEEECCCCCCTTCHHHH---HHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCT------HHHHHHHHHHHH
T ss_pred             HhC-CCC---EEEecCCCCCCchHHHH---HHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHH------HHHHHHHHHHHH
Confidence            321 111   01222334433222333   4445899999999999999  55555 44443      34444555543 


Q ss_pred             CCcEEEEEeCChh
Q 027067          187 KGGIVIVATHLPI  199 (229)
Q Consensus       187 ~g~tii~vtH~~~  199 (229)
                      .|.|+|++||+..
T Consensus       247 ~~~t~iivTh~d~  259 (304)
T 1rj9_A          247 VGLTGVIVTKLDG  259 (304)
T ss_dssp             HCCSEEEEECTTS
T ss_pred             cCCcEEEEECCcc
Confidence            3889999999843

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.88  E-value=1.3e-22  Score=180.50  Aligned_cols=62  Identities=26%  Similarity=0.262  Sum_probs=56.0

Q ss_pred             cCCCC-CCChhHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          133 KEKAR-MLSMGQRKRLQLARLLA---------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       133 ~~~~~-~LSgGqkqRv~lAral~---------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      ++++. .||+|||||++||++|+         .+|+||||||||++||+..++.+.+.+..+.   .|+|++||.
T Consensus       259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~  330 (359)
T 2o5v_A          259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL  330 (359)
T ss_dssp             TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC
T ss_pred             CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec
Confidence            34566 79999999999999999         8999999999999999999999999987763   699999994

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=99.87  E-value=5.4e-22  Score=180.04  Aligned_cols=67  Identities=31%  Similarity=0.364  Sum_probs=59.9

Q ss_pred             CCCCChhHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHH
Q 027067          136 ARMLSMGQRKRLQLARLLA----IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       136 ~~~LSgGqkqRv~lAral~----~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~  202 (229)
                      +..||||||||++||++|+    .+|+++||||||++||+..+..+.+++..+.+.+.++|++||+...+.
T Consensus       331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~  401 (430)
T 1w1w_A          331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE  401 (430)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred             cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence            4469999999999999999    589999999999999999999999999988656789999999965543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.87  E-value=7.6e-22  Score=193.56  Aligned_cols=146  Identities=23%  Similarity=0.200  Sum_probs=99.6

Q ss_pred             CcEEEEeEEEEe-----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHH--------HCCCCCCccEEEEcCEeCC
Q 027067            9 PRLLLKNVSCMR-----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRML--------AGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus         9 ~~l~l~~l~~~~-----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i--------~Gl~~p~~G~I~~~g~~~~   75 (229)
                      ..+.+++....+     +++.+++|++|++++|++++|+||||||||||||++        .|..-|.++.. +      
T Consensus       630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-~------  702 (934)
T 3thx_A          630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-V------  702 (934)
T ss_dssp             CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-E------
T ss_pred             cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-c------
Confidence            357777665432     345789999999999999999999999999999999        55444433211 0      


Q ss_pred             CCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH--
Q 027067           76 QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL--  153 (229)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral--  153 (229)
                                  +.   -..+                          +..+|+.   +.....+|+|++++..+|+++  
T Consensus       703 ------------~~---~d~i--------------------------~~~ig~~---d~l~~~lStf~~e~~~~a~il~~  738 (934)
T 3thx_A          703 ------------SI---VDCI--------------------------LARVGAG---DSQLKGVSTFMAEMLETASILRS  738 (934)
T ss_dssp             ------------EC---CSEE--------------------------EEECC------------CHHHHHHHHHHHHHHH
T ss_pred             ------------hH---HHHH--------------------------HHhcCch---hhHHHhHhhhHHHHHHHHHHHHh
Confidence                        00   0000                          0111221   122346788888888888888  


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLL-EYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l-~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|+++||||||+|+|+.....+ ..+++.+.+ .|.++|++||+.+.. ..++
T Consensus       739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad  792 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALAN  792 (934)
T ss_dssp             CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGG
T ss_pred             ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhc
Confidence            999999999999999999877665 777777765 489999999996554 4443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.86  E-value=2.1e-24  Score=176.01  Aligned_cols=176  Identities=18%  Similarity=0.153  Sum_probs=97.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC-----CCCccEEEEcC-------EeCCCC
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS-----KPSAGEILWNG-------HDITQS   77 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~-----~p~~G~I~~~g-------~~~~~~   77 (229)
                      +|+++|+++.|+ .+++++  |.+.+|..++|+|+||||||||++.|+|..     .|+.|.+.+.+       ..+...
T Consensus         3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt   79 (210)
T 1pui_A            3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL   79 (210)
T ss_dssp             --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred             chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence            589999999997 467887  899999999999999999999999999998     78888775422       111000


Q ss_pred             -ch---------hhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChh-hcCCCCCCChhHHHH
Q 027067           78 -GI---------FHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKR  146 (229)
Q Consensus        78 -~~---------~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqR  146 (229)
                       +.         ...++..++++.+.......+.+..++...  .........+++...++... ...++..+|+||+||
T Consensus        80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~  157 (210)
T 1pui_A           80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP--LKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA  157 (210)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC--CCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred             cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC--CchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence             00         000000000000000000000000000000  00000112344555666543 356678899999999


Q ss_pred             -HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 027067          147 -LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI  190 (229)
Q Consensus       147 -v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~t  190 (229)
                       +..+++++.+|+++++|||||++|..+.+.+.+.+.++..++.|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~  202 (210)
T 1pui_A          158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP  202 (210)
T ss_dssp             HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence             89999999999999999999999999999999888887655543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.86  E-value=2.1e-24  Score=203.95  Aligned_cols=168  Identities=12%  Similarity=0.084  Sum_probs=104.5

Q ss_pred             CcEEEEeEEEEeCC--eeeeeee----------eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCC
Q 027067            9 PRLLLKNVSCMRNA--QQILRHV----------NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDIT   75 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~v----------sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~   75 (229)
                      +.++++||++.|+.  +++|+.+          +++++.   +||+|||||||||||++|+|+..| ++|.|+++|.++.
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~   85 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK   85 (608)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred             chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence            46899999999975  3455544          366654   999999999999999999999988 7999999998853


Q ss_pred             CC--chhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHH
Q 027067           76 QS--GIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        76 ~~--~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      ..  .....++..++|++|+..+++..+|.+|+.+......             ..      ...+|   ++++.++.+.
T Consensus        86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~-------------~~------~~~~s---~~~i~l~i~~  143 (608)
T 3szr_A           86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA-------------GE------GMGIS---HELITLEISS  143 (608)
T ss_dssp             EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH-------------CS------SSCCC---SCCEEEEEEE
T ss_pred             EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc-------------CC------ccccc---hHHHHHHhcC
Confidence            11  1112345678999999999999999999876532110             00      00111   1223333344


Q ss_pred             hcCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHHh--CCcEEEEEeCChhhH
Q 027067          154 AIDRPIWLLDEP------SVALDYDGVRLLEYIIAEHRK--KGGIVIVATHLPIQI  201 (229)
Q Consensus       154 ~~~p~illlDEP------t~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH~~~~~  201 (229)
                      ...|+++|+|||      |++||+..++.+.+++..+.+  .+.+++++||+.+..
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a  199 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA  199 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence            558999999999      999999999999999998633  367899999997643

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.85  E-value=1.8e-22  Score=197.40  Aligned_cols=146  Identities=25%  Similarity=0.230  Sum_probs=102.5

Q ss_pred             HHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh
Q 027067           51 TFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR  130 (229)
Q Consensus        51 TLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~  130 (229)
                      |...|..+.++|..|+|+++|+++...... .....+.|+.+ .    .++..+......... ...+..+.+..+|+..
T Consensus       383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~-~v~~~l~~~~~-~----~l~~~~~~~~~~~~~-~~~~~~~~L~~vgL~~  455 (916)
T 3pih_A          383 TCSVCGGRRLNREALSVKINGLNIHEFTEL-SISEELEFLKN-L----NLTEREREIVGELLK-EIEKRLEFLVDVGLEY  455 (916)
T ss_dssp             ECTTTCSCCBCTTGGGEEETTEEHHHHHHS-BHHHHHHHHHS-C----CCCTTTTTTHHHHHH-HHHHHHHHHHTTTCTT
T ss_pred             cchhcccccCChHhcCcEECCccHHHhhhC-CHHHHHHHHHh-c----cCcHHHHHHHHhhHH-HHHHHHHHHHHcCCcc
Confidence            344666777899999999999987431100 00111111110 0    111111111000000 0112345678899975


Q ss_pred             h-hcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          131 L-AKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       131 ~-~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      . .++++.+|||||||||+|||||+.+|+  +|||||||+|||+...+.+.+++++++++|.|||+||||++.+..
T Consensus       456 l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~  531 (916)
T 3pih_A          456 LTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN  531 (916)
T ss_dssp             CBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT
T ss_pred             ccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence            5 689999999999999999999999887  999999999999999999999999998889999999999988765

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.85  E-value=2e-21  Score=152.54  Aligned_cols=74  Identities=34%  Similarity=0.367  Sum_probs=66.5

Q ss_pred             hcCCCCCCChhHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          132 AKEKARMLSMGQRKRLQLA------RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lA------ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      .++++.+||||||||++||      |||+.+|+++||||||++||+.+++.+.+.+..++++|.|||++||+. ++...+
T Consensus        51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~  129 (148)
T 1f2t_B           51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAA  129 (148)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGC
T ss_pred             ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhC
Confidence            5788999999999999876      899999999999999999999999999999999877789999999998 455555


Q ss_pred             c
Q 027067          206 N  206 (229)
Q Consensus       206 ~  206 (229)
                      |
T Consensus       130 d  130 (148)
T 1f2t_B          130 D  130 (148)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.85  E-value=9.3e-25  Score=179.13  Aligned_cols=143  Identities=12%  Similarity=0.045  Sum_probs=110.0

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccC--CCCCHHHhHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVK--EKFTVLDNVQWFE  110 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~e~l~~~~  110 (229)
                      .++|+++||+||||||||||+++|+|++.|                       .++++++++.++  ..+++.++..+..
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~   59 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------------------RVALLPMDHYYKDLGHLPLEERLRVNY   59 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence            578999999999999999999999998765                       245666665554  4567777765421


Q ss_pred             HhcC--ccccHHHHHHHhCCChhhcCCCCCCChhH----HHHHHHHHHHhcCCCeEEEeCCCCC-------CCHHHHHHH
Q 027067          111 VLEG--KQGNSLPALELMGLGRLAKEKARMLSMGQ----RKRLQLARLLAIDRPIWLLDEPSVA-------LDYDGVRLL  177 (229)
Q Consensus       111 ~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq----kqRv~lAral~~~p~illlDEPt~~-------LD~~~~~~l  177 (229)
                      ....  ......+.++.+++.+..+.++.++|+||    +||+++|++++.+|+++++||||++       ||+.....+
T Consensus        60 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~  139 (211)
T 3asz_A           60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERF  139 (211)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHH
T ss_pred             CChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHH
Confidence            1111  12335667888888777777899999997    4788999999999999999999999       999888777


Q ss_pred             HHHHHHH-HhCCcEEEEEeCCh
Q 027067          178 EYIIAEH-RKKGGIVIVATHLP  198 (229)
Q Consensus       178 ~~~l~~~-~~~g~tii~vtH~~  198 (229)
                      .+.+... +++|.|++.++|+.
T Consensus       140 ~r~l~r~~~~~g~t~~~~~~~~  161 (211)
T 3asz_A          140 IRRLKRDVLERGRSLEGVVAQY  161 (211)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHH
Confidence            7777664 56689999999974

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.84  E-value=2.1e-22  Score=166.20  Aligned_cols=140  Identities=13%  Similarity=0.103  Sum_probs=84.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-------CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-------SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD  104 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-------~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e  104 (229)
                      .|++|++++|+||||||||||+++|+|+..+       ..|.+++++.+...       ...+.++++...+++. ++.+
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-------~~~i~~~~~~~~~~~~-~~~~   92 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-------PERIREIAQNRGLDPD-EVLK   92 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-------HHHHHHHHHHTTSCHH-HHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-------HHHHHHHHHHcCCCHH-HHhh
Confidence            6899999999999999999999999996555       34477777654211       1122233333333222 4444


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChh-HHHHHHHHHHHhc-------CCCeEEEeCCCCCCCHH----
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMG-QRKRLQLARLLAI-------DRPIWLLDEPSVALDYD----  172 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG-qkqRv~lAral~~-------~p~illlDEPt~~LD~~----  172 (229)
                      |+.+.                           ...+.+ +++.+..+++++.       +|+++++||||+++|+.    
T Consensus        93 ~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~  145 (231)
T 4a74_A           93 HIYVA---------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR  145 (231)
T ss_dssp             TEEEE---------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCST
T ss_pred             cEEEE---------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCC
Confidence            43221                           112222 2333444555444       99999999999999983    


Q ss_pred             ---H-----HHHHHHHHHHH-HhCCcEEEEEeCChhh----HHhhhc
Q 027067          173 ---G-----VRLLEYIIAEH-RKKGGIVIVATHLPIQ----IEDAMN  206 (229)
Q Consensus       173 ---~-----~~~l~~~l~~~-~~~g~tii~vtH~~~~----~~~~~~  206 (229)
                         .     ...+...+..+ ++.|.|||++||....    ++..+|
T Consensus       146 ~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d  192 (231)
T 4a74_A          146 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSAT  192 (231)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCS
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhce
Confidence               1     12455555554 4559999999996555    555443

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.83  E-value=2.2e-23  Score=170.01  Aligned_cols=147  Identities=14%  Similarity=0.107  Sum_probs=99.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK  115 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~  115 (229)
                      |++++|+||||||||||+++|+|+++ ++| |.++|.+....   ......++|++|+.  ...   .+++..   ....
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~---~~~~~~ig~~~~~~--~g~---~~~l~~---~~~~   67 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV---RQGGRRIGFDVVTL--SGT---RGPLSR---VGLE   67 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE---ETTSSEEEEEEEET--TSC---EEEEEE---CCCC
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh---HhhhceEEEEEEec--ccc---eehhhc---cccc
Confidence            78999999999999999999999999 999 99999887432   23456788888754  111   122110   0000


Q ss_pred             cccHHHHHHHhCCChhhcCCCCCCChhHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHHHHHHHHHHhCCc
Q 027067          116 QGNSLPALELMGLGRLAKEKARMLSMGQRKRL-QLAR---LLAIDRPIWLLDE--PSVALDYDGVRLLEYIIAEHRKKGG  189 (229)
Q Consensus       116 ~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv-~lAr---al~~~p~illlDE--Pt~~LD~~~~~~l~~~l~~~~~~g~  189 (229)
                      ..       .........++...+|+|||+++ ++++   |++.+|++||+||  |+..+|....+.+.+++.    ...
T Consensus        68 ~~-------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~~~  136 (189)
T 2i3b_A           68 PP-------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----TPG  136 (189)
T ss_dssp             CC-------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----CSS
T ss_pred             CC-------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----CCC
Confidence            00       00001134556668999999988 4454   6899999999999  899999987777666664    233


Q ss_pred             EEEE----EeCCh--hhHHhhhc
Q 027067          190 IVIV----ATHLP--IQIEDAMN  206 (229)
Q Consensus       190 tii~----vtH~~--~~~~~~~~  206 (229)
                      ++|+    +||+.  .+++..++
T Consensus       137 ~~ilgti~vsh~~~~~~vd~i~~  159 (189)
T 2i3b_A          137 TIILGTIPVPKGKPLALVEEIRN  159 (189)
T ss_dssp             CCEEEECCCCCSSCCTTHHHHHT
T ss_pred             cEEEEEeecCCCCchHHHHHHee
Confidence            4443    44985  66666654

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.83  E-value=1.1e-20  Score=161.72  Aligned_cols=154  Identities=13%  Similarity=0.078  Sum_probs=101.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV  111 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~  111 (229)
                      .+++|++++|+||||||||||++.+++...  .|.++ .|.+...       ...+.|+..+....   .+...+.... 
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~-------~~~v~~~~~e~~~~---~~~~r~~~~g-   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP-------TGPVIYLPAEDPPT---AIHHRLHALG-   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC-------CCCEEEEESSSCHH---HHHHHHHHHH-
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC-------CccEEEEECCCCHH---HHHHHHHHHH-
Confidence            478999999999999999999999998654  46653 3443211       12344554332110   1111111000 


Q ss_pred             hcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHH---HHHHHHHHHHHH-
Q 027067          112 LEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV--ALDYDG---VRLLEYIIAEHR-  185 (229)
Q Consensus       112 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~--~LD~~~---~~~l~~~l~~~~-  185 (229)
                      .........++++.+.+.+..++++..||+||+|++   ++++.+|+++++||||+  ++|...   ...+...|..+. 
T Consensus        92 ~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~  168 (279)
T 1nlf_A           92 AHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAA  168 (279)
T ss_dssp             TTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHH
Confidence            001112234567788887778889999999998865   68888999999999999  999743   366667777764 


Q ss_pred             hCCcEEEEEeCChhhHH
Q 027067          186 KKGGIVIVATHLPIQIE  202 (229)
Q Consensus       186 ~~g~tii~vtH~~~~~~  202 (229)
                      +.|.|||++||+.....
T Consensus       169 ~~g~tvi~i~H~~~~~~  185 (279)
T 1nlf_A          169 DTGCSIVFLHHASKGAA  185 (279)
T ss_dssp             HHCCEEEEEEEC-----
T ss_pred             HcCCEEEEEecCCCccc
Confidence            56999999999987654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.82  E-value=4.9e-21  Score=185.58  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=99.4

Q ss_pred             CcEEEEeEEEEe-----CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEEcCEeCCCCchhhh
Q 027067            9 PRLLLKNVSCMR-----NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILWNGHDITQSGIFHQ   82 (229)
Q Consensus         9 ~~l~l~~l~~~~-----~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~~~~~~~~~~   82 (229)
                      +.+.+++...-.     +++.+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|.      .+..      
T Consensus       576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa------  642 (800)
T 1wb9_A          576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA------  642 (800)
T ss_dssp             SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS------
T ss_pred             CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch------
Confidence            357777654321     457799999999 99999999999999999999999997432 2221      1111      


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      ....++++.+   ++..+++.|++..                          ..+++|+++++ ++.+...+.+|+++||
T Consensus       643 ~~~~i~~~~~---i~~~~~~~d~l~~--------------------------~~stf~~e~~~-~~~il~~a~~psLlLL  692 (800)
T 1wb9_A          643 QKVEIGPIDR---IFTRVGAADDLAS--------------------------GRSTFMVEMTE-TANILHNATEYSLVLM  692 (800)
T ss_dssp             SEEEECCCCE---EEEEEC-------------------------------------CHHHHHH-HHHHHHHCCTTEEEEE
T ss_pred             hcccceeHHH---HHhhCCHHHHHHh--------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEE
Confidence            0112333322   3444455554321                          12356777765 4445556899999999


Q ss_pred             eCCCCCCCHHHHHH-HHHHHHHHHh-CCcEEEEEeCChhhHH
Q 027067          163 DEPSVALDYDGVRL-LEYIIAEHRK-KGGIVIVATHLPIQIE  202 (229)
Q Consensus       163 DEPt~~LD~~~~~~-l~~~l~~~~~-~g~tii~vtH~~~~~~  202 (229)
                      |||++|+|+..... ...+++.+.+ .|.++|++||+.+...
T Consensus       693 DEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~  734 (800)
T 1wb9_A          693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  734 (800)
T ss_dssp             ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             ECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH
Confidence            99999999876554 4778888877 4899999999987654

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.82  E-value=1e-21  Score=161.77  Aligned_cols=155  Identities=14%  Similarity=0.130  Sum_probs=101.5

Q ss_pred             CeeeeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           22 AQQILRHVNI-SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        22 ~~~iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      +.+.|+++.. .+++|++++|+||||||||||++.|++...++.|.|.+.+.+...... ......+++.++..... .+
T Consensus         8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~   85 (235)
T 2w0m_A            8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSI-IRQAKQFNWDFEEYIEK-KL   85 (235)
T ss_dssp             SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHH-HHHHHHTTCCCGGGBTT-TE
T ss_pred             CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHH-HHHHHHhcchHHHHhhC-CE
Confidence            3456788887 899999999999999999999999999888888888876544321111 11111222222111000 00


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC--eEEEeCCCCCC--CHHHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP--IWLLDEPSVAL--DYDGVRL  176 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~--illlDEPt~~L--D~~~~~~  176 (229)
                      .+.+.         .       ...++ ...   .....|.++.++...+.+...+|+  ++++||||+.+  |+.....
T Consensus        86 ~~~~~---------~-------~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~  145 (235)
T 2w0m_A           86 IIIDA---------L-------MKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK  145 (235)
T ss_dssp             EEEEC---------C-------C-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred             EEEec---------c-------ccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence            00000         0       00011 111   123449999999888888888999  99999999888  9887778


Q ss_pred             HHHHHHHHH-hCCcEEEEEeCCh
Q 027067          177 LEYIIAEHR-KKGGIVIVATHLP  198 (229)
Q Consensus       177 l~~~l~~~~-~~g~tii~vtH~~  198 (229)
                      +.+.+..+. +.|.|||++||+.
T Consensus       146 ~~~~l~~~~~~~~~~vi~~~h~~  168 (235)
T 2w0m_A          146 ISYYLKRVLNKWNFTIYATSQYA  168 (235)
T ss_dssp             HHHHHHHHHHHTTEEEEEEEC--
T ss_pred             HHHHHHHHHHhCCCeEEEEeccC
Confidence            888887764 5689999999998

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.5e-22  Score=181.92  Aligned_cols=167  Identities=14%  Similarity=0.094  Sum_probs=98.9

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      ..++.++||+++|+++.+++++||+|      +|+|+||||||||+++|+|...++.|   .+|..+....  ......+
T Consensus         9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~--t~~~~~i   77 (418)
T 2qag_C            9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK--TVQVEQS   77 (418)
T ss_dssp             ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-------CCEEEEE
T ss_pred             cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc--ceeeeeE
Confidence            35799999999999999999999998      99999999999999999999886555   1222221100  0112346


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC---eEEEeC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP---IWLLDE  164 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~---illlDE  164 (229)
                      +++++...++..+|+.|++.+....... .....+.+.      .+   ..++.+++||++|||+++.+|+   +|++||
T Consensus        78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~-~~~~~i~~~------i~---~~~~~~l~qr~~IaRal~~d~~~~vlL~lde  147 (418)
T 2qag_C           78 KVLIKEGGVQLLLTIVDTPGFGDAVDNS-NCWQPVIDY------ID---SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA  147 (418)
T ss_dssp             ECC------CEEEEEEECC------------CHHHHHH------HH---HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred             EEEEecCCcccceeeeechhhhhhccch-hhHHHHHHH------HH---HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence            7777777777778899988765432110 001111111      11   1455677889999999999999   999999


Q ss_pred             CC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          165 PS-VALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       165 Pt-~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      || .+||+...+.    ++.+.. +.+||+|.|-.+.
T Consensus       148 Pt~~~L~~~d~~~----lk~L~~-~v~iIlVinK~Dl  179 (418)
T 2qag_C          148 PSGHGLKPLDIEF----MKRLHE-KVNIIPLIAKADT  179 (418)
T ss_dssp             C-CCSCCHHHHHH----HHHHTT-TSEEEEEEESTTS
T ss_pred             CcccCCCHHHHHH----HHHHhc-cCcEEEEEEcccC
Confidence            99 6999887533    334443 6777777775443

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.82  E-value=7.8e-21  Score=185.52  Aligned_cols=106  Identities=26%  Similarity=0.356  Sum_probs=88.7

Q ss_pred             CCCCHHHhHHHHHHhcCcc-------------ccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEE
Q 027067           98 EKFTVLDNVQWFEVLEGKQ-------------GNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWL  161 (229)
Q Consensus        98 ~~~tv~e~l~~~~~~~~~~-------------~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~ill  161 (229)
                      ..+||.|++.|+..+.-..             .+..+.+..+||..+ +++.+.+|||||+|||+||++|+.+|  ++||
T Consensus       450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llI  529 (972)
T 2r6f_A          450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYV  529 (972)
T ss_dssp             HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEE
T ss_pred             hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEE
Confidence            3468999988865442110             011245888999865 79999999999999999999999985  9999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      |||||++||+...+.+.++|+.+++.|.|||+|+||++++..
T Consensus       530 LDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~  571 (972)
T 2r6f_A          530 LDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA  571 (972)
T ss_dssp             EECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred             EeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence            999999999999999999999999889999999999988753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.81  E-value=5.9e-21  Score=185.35  Aligned_cols=157  Identities=22%  Similarity=0.217  Sum_probs=107.3

Q ss_pred             CCCccHHHHHHHHHCC---------CCCCccEEEEcCEeCCCCchhhhhhhcceEeec---ccccC----CCCCHHHhHH
Q 027067           44 TNGSGKSTFLRMLAGF---------SKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL---KDAVK----EKFTVLDNVQ  107 (229)
Q Consensus        44 ~NGsGKSTLl~~i~Gl---------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~----~~~tv~e~l~  107 (229)
                      .+..||+++.+.+...         +.|.+|+|+++|+++...... .......++.+   .+...    ..++. ++..
T Consensus       270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~-~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  347 (842)
T 2vf7_A          270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRL-PLARVSELLRPYAEEREPGHAERVKNRP-EQAI  347 (842)
T ss_dssp             CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHS-BHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHH
T ss_pred             cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhc-CHHHHHHHHHhhhhhhhhcccchhhcch-hhHH
Confidence            3557999999988774         345678999999887541100 00011111111   11000    00111 1111


Q ss_pred             HHHHh-cCccccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          108 WFEVL-EGKQGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       108 ~~~~~-~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      ....+ .....+ .+.+..+|+... +++++.+|||||||||+||++|+.+|  .+|||||||++||+...+.+.++++.
T Consensus       348 i~~~i~~ei~~r-l~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~  426 (842)
T 2vf7_A          348 ALQRMAADLVKR-LDVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALEN  426 (842)
T ss_dssp             HHHHHHHHHHHH-HHHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHH
Confidence            11111 111122 236888999865 79999999999999999999999999  59999999999999999999999999


Q ss_pred             HHhCCcEEEEEeCChhhHHh
Q 027067          184 HRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       184 ~~~~g~tii~vtH~~~~~~~  203 (229)
                      +++.|.|||+|+||++.+..
T Consensus       427 L~~~G~TVIvVeHdl~~l~~  446 (842)
T 2vf7_A          427 LKRGGNSLFVVEHDLDVIRR  446 (842)
T ss_dssp             HHTTTCEEEEECCCHHHHTT
T ss_pred             HHHcCCEEEEEcCCHHHHHh
Confidence            99889999999999987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.81  E-value=2e-20  Score=166.21  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=88.9

Q ss_pred             eEEEEe--CCeeeeeeeeE-------EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhh
Q 027067           15 NVSCMR--NAQQILRHVNI-------SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYK   84 (229)
Q Consensus        15 ~l~~~~--~~~~iL~~vsl-------~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~   84 (229)
                      ++++++  ...+.|+++.+       .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.++...     ..
T Consensus        93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~-----~~  167 (356)
T 3jvv_A           93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV-----HE  167 (356)
T ss_dssp             EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC-----CC
T ss_pred             EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh-----hh
Confidence            344444  22345566655       67889999999999999999999999999987 56665543333211     11


Q ss_pred             hcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           85 LQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        85 ~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ...++++|........+..+                                           +||+||.++|++|++||
T Consensus       168 ~~~~~v~q~~~~~~~~~~~~-------------------------------------------~La~aL~~~PdvillDE  204 (356)
T 3jvv_A          168 SKKCLVNQREVHRDTLGFSE-------------------------------------------ALRSALREDPDIILVGE  204 (356)
T ss_dssp             CSSSEEEEEEBTTTBSCHHH-------------------------------------------HHHHHTTSCCSEEEESC
T ss_pred             ccccceeeeeeccccCCHHH-------------------------------------------HHHHHhhhCcCEEecCC
Confidence            12233433221111111100                                           99999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      ||   |.+..+.    +.++.+.|.+||+++|+.+.+ .++
T Consensus       205 p~---d~e~~~~----~~~~~~~G~~vl~t~H~~~~~-~~~  237 (356)
T 3jvv_A          205 MR---DLETIRL----ALTAAETGHLVFGTLHTTSAA-KTI  237 (356)
T ss_dssp             CC---SHHHHHH----HHHHHHTTCEEEEEESCSSHH-HHH
T ss_pred             CC---CHHHHHH----HHHHHhcCCEEEEEEccChHH-HHH
Confidence            99   6555433    333456799999999998877 444

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.81  E-value=7.1e-21  Score=168.73  Aligned_cols=145  Identities=14%  Similarity=0.093  Sum_probs=99.7

Q ss_pred             eeeeee-eEEEeCCcEEEEEcCCCccHHHHHHHHHCCC--CCCc----cE-EEEcCEeCCCCchhhhhhhcceEeecccc
Q 027067           24 QILRHV-NISIHDGGALVLTGTNGSGKSTFLRMLAGFS--KPSA----GE-ILWNGHDITQSGIFHQYKLQLNWLSLKDA   95 (229)
Q Consensus        24 ~iL~~v-sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~--~p~~----G~-I~~~g~~~~~~~~~~~~~~~~~~~~~~~~   95 (229)
                      +.|+.+ ++.|++|++++|+||||||||||++.+++..  +|++    |. |++++++..       ...+++++++...
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-------~~~~i~~i~q~~~  190 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-------RPERIREIAQNRG  190 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-------CHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-------CHHHHHHHHHHcC
Confidence            345554 6799999999999999999999999999998  6776    67 889886542       1123445555544


Q ss_pred             cCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-------cCCCeEEEeCCCCC
Q 027067           96 VKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-------IDRPIWLLDEPSVA  168 (229)
Q Consensus        96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-------~~p~illlDEPt~~  168 (229)
                      +++. ++.+|+.+...                          .-|.+++|++.++++++       .+|+++|+||||++
T Consensus       191 ~~~~-~v~~ni~~~~~--------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~  243 (349)
T 1pzn_A          191 LDPD-EVLKHIYVARA--------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH  243 (349)
T ss_dssp             CCHH-HHGGGEEEEEC--------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred             CCHH-HHhhCEEEEec--------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence            4332 45555432100                          01467788888888887       68999999999999


Q ss_pred             CCHHH------------HHHHHHHHHHH-HhCCcEEEEEeCChhhHH
Q 027067          169 LDYDG------------VRLLEYIIAEH-RKKGGIVIVATHLPIQIE  202 (229)
Q Consensus       169 LD~~~------------~~~l~~~l~~~-~~~g~tii~vtH~~~~~~  202 (229)
                      +|+..            ...+...|..+ ++.|.|||+++|......
T Consensus       244 ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~  290 (349)
T 1pzn_A          244 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD  290 (349)
T ss_dssp             HHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred             hhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence            99852            23444444554 345899999999876554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.79  E-value=1.2e-21  Score=157.79  Aligned_cols=149  Identities=17%  Similarity=0.082  Sum_probs=95.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV  111 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~  111 (229)
                      .+++|++++|+||||||||||+++|+|.  ++.|.|.++|.++....   .....++|+++...  +..++.+|+.+...
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~---~~~~~~~~~~~~~~--~~~~v~~~l~~~~~   77 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI---KHGRIDPWLPQSHQ--QNRMIMQIAADVAG   77 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC---CSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh---hcccccCCccchhh--hhHHHHHHHHHHHH
Confidence            4789999999999999999999999998  78899999986542110   01112345544332  34578888765432


Q ss_pred             hc---CccccHHHHHHHhCCChhh--cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 027067          112 LE---GKQGNSLPALELMGLGRLA--KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK  186 (229)
Q Consensus       112 ~~---~~~~~~~~~l~~~~l~~~~--~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  186 (229)
                      ..   +.......++..+++..+.  +.++..+|+|++||++++|++..+|+++        +|+...+.+.+.+..+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~  149 (191)
T 1zp6_A           78 RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGA  149 (191)
T ss_dssp             HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGG
T ss_pred             HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCc
Confidence            11   1111111111122333333  4456789999999999999999999876        688777777776665543


Q ss_pred             CCcEEEEEe
Q 027067          187 KGGIVIVAT  195 (229)
Q Consensus       187 ~g~tii~vt  195 (229)
                      .+..+|.++
T Consensus       150 ~~~~~i~t~  158 (191)
T 1zp6_A          150 FEHHVLPVS  158 (191)
T ss_dssp             GGGGEEECT
T ss_pred             ccccEEECC
Confidence            333344443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.78  E-value=9.9e-21  Score=157.63  Aligned_cols=131  Identities=11%  Similarity=0.180  Sum_probs=90.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH----HH
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV----LD  104 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv----~e  104 (229)
                      -..++|++++|+||||||||||+++|+|+++|  .+|.|.+.+++...     ..+.+++|++|.+..++.+++    .|
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-----~e~~gi~y~fq~~~~f~~~~~~~~f~E   85 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-----GEVHGEHYFFVNHDEFKEMISRDAFLE   85 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence            36789999999999999999999999999986  68999888765432     123467888887655444443    22


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH  184 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~  184 (229)
                      |+.+...                           +.|-.+++   +..++..++++|||     ||+.+...+.+.+.  
T Consensus        86 ~~~~~~~---------------------------~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~--  128 (219)
T 1s96_A           86 HAEVFGN---------------------------YYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP--  128 (219)
T ss_dssp             EEEETTE---------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT--
T ss_pred             HHHHHhc---------------------------cCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc--
Confidence            2211100                           00101121   33444568999999     99999998888765  


Q ss_pred             HhCCcEEEEEeCChhhHHhhh
Q 027067          185 RKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       185 ~~~g~tii~vtH~~~~~~~~~  205 (229)
                        ++.||+++||++++++.-+
T Consensus       129 --~~~tI~i~th~~~~l~~Rl  147 (219)
T 1s96_A          129 --HARSIFILPPSKIELDRRL  147 (219)
T ss_dssp             --TCEEEEEECSSHHHHHHHH
T ss_pred             --CCEEEEEECCCHHHHHHHH
Confidence              5889999999999888743

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.77  E-value=3.7e-21  Score=174.22  Aligned_cols=175  Identities=15%  Similarity=0.100  Sum_probs=113.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .+++++ ++.|++.+ |+++||++++|++  ++|+||||||||||+|+|+|+.        ++|.++..... ......+
T Consensus        16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~-~~~~~~i   84 (427)
T 2qag_B           16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQP-GVQLQSN   84 (427)
T ss_dssp             -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCS-SCEEEEE
T ss_pred             eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCc-cceEeeE
Confidence            477788 88998888 9999999999999  9999999999999999999984        23333321111 1123468


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcC----------ccccHHHHHHHh-CCC----hhhcCCC-----------CCCCh
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEG----------KQGNSLPALELM-GLG----RLAKEKA-----------RMLSM  141 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~----------~~~~~~~~l~~~-~l~----~~~~~~~-----------~~LSg  141 (229)
                      +|++|...+++.+|+.||+.++.....          ......+.+... ++.    ...+.++           ..|+-
T Consensus        85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~  164 (427)
T 2qag_B           85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS  164 (427)
T ss_dssp             EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred             EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence            899998888778899888765422110          001122334433 332    1112221           24555


Q ss_pred             hHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCh
Q 027067          142 GQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVATHLP  198 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~-~~~~g~tii~vtH~~  198 (229)
                      ..   +.++++|..+++++++|||+..|.+.....+.+.+++ ++..|..|+.+|.+-
T Consensus       165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d  219 (427)
T 2qag_B          165 LD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD  219 (427)
T ss_dssp             HH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred             HH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence            55   7999999999999999999999999888888887876 888899999999764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.76  E-value=3.3e-22  Score=177.88  Aligned_cols=151  Identities=11%  Similarity=0.070  Sum_probs=96.7

Q ss_pred             eeeeeeEEEeC--CcEEEEEcCCCccHHHHHHHHHCCCCCCc----cEEEEc----CEeCCCCchhhhhhhcceEeeccc
Q 027067           25 ILRHVNISIHD--GGALVLTGTNGSGKSTFLRMLAGFSKPSA----GEILWN----GHDITQSGIFHQYKLQLNWLSLKD   94 (229)
Q Consensus        25 iL~~vsl~i~~--Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~----G~I~~~----g~~~~~~~~~~~~~~~~~~~~~~~   94 (229)
                      +.+.|+++|.+  |+.++|+||||||||||+|+|+|+++|++    |+|+++    |.++ .... ..+ ..+++++|..
T Consensus       157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~-~~~-~~I~~~~q~~  233 (365)
T 1lw7_A          157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQY-SDY-PQMALGHQRY  233 (365)
T ss_dssp             GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCT-TTH-HHHHHHHHHH
T ss_pred             ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCCh-hHH-HHHHHHHHHH
Confidence            35679999999  99999999999999999999999999999    887764    2222 1110 111 2233333221


Q ss_pred             ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-cCCCeEEEeC---CC----
Q 027067           95 AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-IDRPIWLLDE---PS----  166 (229)
Q Consensus        95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p~illlDE---Pt----  166 (229)
                      ..+ ..++.+|+.++                 + .+..+..+..+|+|++|+..+++++. .+|++++|||   |+    
T Consensus       234 ~~~-~~t~~~nl~~~-----------------~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g  294 (365)
T 1lw7_A          234 IDY-AVRHSHKIAFI-----------------D-TDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDG  294 (365)
T ss_dssp             HHH-HHHHCSSEEEE-----------------S-SCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----
T ss_pred             HHH-HHhccCCEEEE-----------------e-CCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCC
Confidence            110 11222222110                 0 11122233456677788888888874 6999999999   65    


Q ss_pred             --CCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCC
Q 027067          167 --VALDYDGVRLLEYIIAEHR-KKGGIVIVATHL  197 (229)
Q Consensus       167 --~~LD~~~~~~l~~~l~~~~-~~g~tii~vtH~  197 (229)
                        .++|+..+..+.+.+.++. +.+.+||+++|.
T Consensus       295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~  328 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP  328 (365)
T ss_dssp             ------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred             CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence              5899999999999887764 448899999985

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.76  E-value=5.2e-22  Score=173.81  Aligned_cols=159  Identities=18%  Similarity=0.118  Sum_probs=107.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC--------CCCccEEEEcCEeCCCCch--------------hhhhhhcceEe---e
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS--------KPSAGEILWNGHDITQSGI--------------FHQYKLQLNWL---S   91 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~--------~p~~G~I~~~g~~~~~~~~--------------~~~~~~~~~~~---~   91 (229)
                      ++++|+|+||||||||+|.|.|+.        .|+.|+|.++|.++.....              .......++++   +
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~   84 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL   84 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence            689999999999999999999997        7899999999998754310              11233445555   4


Q ss_pred             cccccCCCCCHHHhHHHHH--H----h-cCcc----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           92 LKDAVKEKFTVLDNVQWFE--V----L-EGKQ----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        92 ~~~~~~~~~tv~e~l~~~~--~----~-~~~~----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      |...+++..++.|+..+..  .    + ....    .....++..+++.++.++.. ++|+||+||+..+++++.+|+++
T Consensus        85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill~k~dl~  163 (318)
T 1nij_A           85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILLTKTDVA  163 (318)
T ss_dssp             HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEEECTTTC
T ss_pred             hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEEECcccC
Confidence            5555555667777654321  0    0 0000    00011222334444433333 79999999999999999999987


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccC
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLR  208 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~  208 (229)
                        |||         +.+.+.++.++ .+.+|+++||+..+++..++..
T Consensus       164 --de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~~~~l~~~~  199 (318)
T 1nij_A          164 --GEA---------EKLHERLARIN-ARAPVYTVTHGDIDLGLLFNTN  199 (318)
T ss_dssp             --SCT---------HHHHHHHHHHC-SSSCEEECCSSCCCGGGGSCCC
T ss_pred             --CHH---------HHHHHHHHHhC-CCCeEEEecccCCCHHHHhCCC
Confidence              998         56667777764 5789999999877777766543

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.76  E-value=2.7e-21  Score=162.70  Aligned_cols=139  Identities=19%  Similarity=0.128  Sum_probs=95.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHH---CCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV  111 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~  111 (229)
                      ++++++|+||||||||||+++|+   |+..|+.|+|.++|.+...     .....+.+++++..+++..++.+++.....
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~  100 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST-----EVGEMAKQYIEKSLLVPDHVITRLMMSELE  100 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC-----HHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC-----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999   9999999999887654321     111223334455556666788888765321


Q ss_pred             --------hcCccccHH--HHHH---HhC------------CChhhcCCCCCCChhHHHHHHHHHHH-hcCCCeEEEe--
Q 027067          112 --------LEGKQGNSL--PALE---LMG------------LGRLAKEKARMLSMGQRKRLQLARLL-AIDRPIWLLD--  163 (229)
Q Consensus       112 --------~~~~~~~~~--~~l~---~~~------------l~~~~~~~~~~LSgGqkqRv~lAral-~~~p~illlD--  163 (229)
                              ..+......  +.+.   .++            +....++++.+|||    |+   +|+ +.+|+++++|  
T Consensus       101 ~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~  173 (246)
T 2bbw_A          101 NRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV  173 (246)
T ss_dssp             TCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred             hcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence                    111111111  1221   122            23345778899999    66   777 9999999999  


Q ss_pred             --CCCCCCCHHHHHHHHHHHHHHH
Q 027067          164 --EPSVALDYDGVRLLEYIIAEHR  185 (229)
Q Consensus       164 --EPt~~LD~~~~~~l~~~l~~~~  185 (229)
                        |||++||..+.+.+.+.+..+.
T Consensus       174 ~~EP~~~ld~~~~~~i~~~l~~~~  197 (246)
T 2bbw_A          174 TGEPLVQQEDDKPEAVAARLRQYK  197 (246)
T ss_dssp             TCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred             cccccccCCCCcHHHHHHHHHHHH
Confidence              9999999988777777766653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.74  E-value=3.6e-19  Score=156.59  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=102.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---hh--hcceEeecccccCCCCCHHHhHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---YK--LQLNWLSLKDAVKEKFTVLDNVQ  107 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~tv~e~l~  107 (229)
                      .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++.......+   +.  .++.+++|...+++..++++|+.
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~  205 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ  205 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999865443221   22  34558888888888889999987


Q ss_pred             HHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-h
Q 027067          108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR-K  186 (229)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~-~  186 (229)
                      +........    -.++..|+.+.....+.+||       .+++++..++.++++|.++. .      .+.+.++.+. +
T Consensus       206 ~~~~~~~d~----vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~------~~~~~~~~~~~~  267 (328)
T 3e70_C          206 HAKARGIDV----VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-N------AIVEQARQFNEA  267 (328)
T ss_dssp             HHHHHTCSE----EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-T------HHHHHHHHHHHH
T ss_pred             HHHhccchh----hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-H------HHHHHHHHHHHh
Confidence            654221110    01122333322233333333       48999999988999996654 2      3333444554 4


Q ss_pred             CCcEEEEEeCCh
Q 027067          187 KGGIVIVATHLP  198 (229)
Q Consensus       187 ~g~tii~vtH~~  198 (229)
                      .+.|+|++||.-
T Consensus       268 ~~it~iilTKlD  279 (328)
T 3e70_C          268 VKIDGIILTKLD  279 (328)
T ss_dssp             SCCCEEEEECGG
T ss_pred             cCCCEEEEeCcC
Confidence            588999999953

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.73  E-value=7.6e-21  Score=150.75  Aligned_cols=88  Identities=9%  Similarity=0.026  Sum_probs=73.0

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      .+++++.|+++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++....  . . .  .+++|
T Consensus        10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~-~-~--~~~~q   82 (158)
T 1htw_A           10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--N-I-A--GKMIY   82 (158)
T ss_dssp             SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--E-E-T--TEEEE
T ss_pred             CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--c-C-C--Cccee
Confidence            345567788888999999999999999999999999999999999999 99999999998764211  1 1 1  26788


Q ss_pred             ccccCCCCCHHHhHHH
Q 027067           93 KDAVKEKFTVLDNVQW  108 (229)
Q Consensus        93 ~~~~~~~~tv~e~l~~  108 (229)
                      +..++ .+|+.||+.+
T Consensus        83 ~~~l~-~ltv~e~l~~   97 (158)
T 1htw_A           83 HFDLY-RLADPEELEF   97 (158)
T ss_dssp             EEECT-TCSCTTHHHH
T ss_pred             ccccc-cCCcHHHHHH
Confidence            88888 8999999854

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.73  E-value=1.7e-21  Score=171.96  Aligned_cols=172  Identities=14%  Similarity=0.096  Sum_probs=117.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~~~~~   86 (229)
                      +++++++++.|+++.+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.|.++.....   ....+..
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~  108 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR  108 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence            4778888888988889999999999999999999999999999999999999999999999988743210   0123456


Q ss_pred             ceEeecccccCCCCC------------HHHhHHHHH-------------------Hh----------cC-c-cccHH---
Q 027067           87 LNWLSLKDAVKEKFT------------VLDNVQWFE-------------------VL----------EG-K-QGNSL---  120 (229)
Q Consensus        87 ~~~~~~~~~~~~~~t------------v~e~l~~~~-------------------~~----------~~-~-~~~~~---  120 (229)
                      +++++|++.++...+            +.|.+....                   ..          .. . .....   
T Consensus       109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~  188 (337)
T 2qm8_A          109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK  188 (337)
T ss_dssp             STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred             heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence            778888776654311            122211000                   00          00 0 00000   


Q ss_pred             -HHHHHhCCC--hhhcC-CCCCCChhHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 027067          121 -PALELMGLG--RLAKE-KARMLSMGQRKRLQLARLLAI------DRPIWLLDEPSVALDYDGVRLLEYIIAEHR  185 (229)
Q Consensus       121 -~~l~~~~l~--~~~~~-~~~~LSgGqkqRv~lAral~~------~p~illlDEPt~~LD~~~~~~l~~~l~~~~  185 (229)
                       ...+...+-  ...|. ....+|+|++|++..|++++.      +|+++.    +|++|..+.+.+.+.+.++.
T Consensus       189 ~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~  259 (337)
T 2qm8_A          189 KGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR  259 (337)
T ss_dssp             TTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence             011111111  12232 235689999999999999987      688876    99999999888888887754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.72  E-value=1.8e-18  Score=154.44  Aligned_cols=123  Identities=19%  Similarity=0.260  Sum_probs=89.0

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCC-ccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPS-AGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~-~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      +|++++  +++|++++|+||||||||||+++|+|+++|+ +|+|.+.+.++..     ..+..+++++|..         
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~-----~~~~~~~~v~Q~~---------  190 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY-----VFKHKKSIVNQRE---------  190 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS-----CCCCSSSEEEEEE---------
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh-----hhccCceEEEeee---------
Confidence            455554  7899999999999999999999999999997 8999776655431     1233456666531         


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                                            +|+.      +..+      +.+|+++|..+|+++++|||+   |++...   ..++.
T Consensus       191 ----------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~  230 (372)
T 2ewv_A          191 ----------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVE---TALRA  230 (372)
T ss_dssp             ----------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHH
T ss_pred             ----------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHH
Confidence                                  1211      2233      469999999999999999999   765533   34444


Q ss_pred             HHhCCcEEEEEeCChhhHHhhh
Q 027067          184 HRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       184 ~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      . ..|.+|+.++|+.+ +.+++
T Consensus       231 ~-~~g~~vi~t~H~~~-~~~~~  250 (372)
T 2ewv_A          231 A-ETGHLVFGTLHTNT-AIDTI  250 (372)
T ss_dssp             H-TTTCEEEECCCCCS-HHHHH
T ss_pred             H-hcCCEEEEEECcch-HHHHH
Confidence            3 46889999999855 44444

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=99.71  E-value=1.8e-19  Score=165.43  Aligned_cols=157  Identities=13%  Similarity=0.096  Sum_probs=106.0

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch---hhh--hhhcceEeecccccCCCC
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI---FHQ--YKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~  100 (229)
                      -+++||++.+|++++|+|+||||||||+++|+|++++++|+|.+.|.+......   ...  .+.+++|++|...+++..
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~  362 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS  362 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence            468999999999999999999999999999999999999999998877654211   111  246789999988777788


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh-cCC-CeEEEeCCCCCCCHHHHHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA-IDR-PIWLLDEPSVALDYDGVRLLE  178 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~-~~p-~illlDEPt~~LD~~~~~~l~  178 (229)
                      ++++|+.+.... +..   .-+++..|........+.+    .+|++.+++++. ..| ++||...|++|.|...     
T Consensus       363 tV~e~l~~a~~~-~~D---vVLIDTaGrl~~~~~lm~E----L~kiv~iar~l~~~~P~evLLvLDattGq~al~-----  429 (503)
T 2yhs_A          363 VIFDAIQAAKAR-NID---VLIADTAGRLQNKSHLMEE----LKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-----  429 (503)
T ss_dssp             HHHHHHHHHHHT-TCS---EEEECCCCSCCCHHHHHHH----HHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHH-----
T ss_pred             HHHHHHHHHHhc-CCC---EEEEeCCCccchhhhHHHH----HHHHHHHHHHhccCCCCeeEEEecCcccHHHHH-----
Confidence            999999876431 110   0011222221111111112    247888888764 456 4566666888865442     


Q ss_pred             HHHHHHH-hCCcEEEEEeC
Q 027067          179 YIIAEHR-KKGGIVIVATH  196 (229)
Q Consensus       179 ~~l~~~~-~~g~tii~vtH  196 (229)
                       .++.++ .-+.|.|++||
T Consensus       430 -~ak~f~~~~~itgvIlTK  447 (503)
T 2yhs_A          430 -QAKLFHEAVGLTGITLTK  447 (503)
T ss_dssp             -HHHHHHHHTCCSEEEEEC
T ss_pred             -HHHHHHhhcCCCEEEEEc
Confidence             233333 34789999999

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.70  E-value=3.8e-17  Score=133.66  Aligned_cols=138  Identities=13%  Similarity=-0.010  Sum_probs=84.4

Q ss_pred             eeeeeeE-EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           25 ILRHVNI-SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        25 iL~~vsl-~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      .|+.+.. .+++|++++|+||||||||||++.+++  .+..+.++++...-  ... .+                   +.
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~~--~~~-~~-------------------~~   63 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEGG--FSP-ER-------------------LV   63 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSCC--CCH-HH-------------------HH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCCC--CCH-HH-------------------HH
Confidence            4455544 588999999999999999999999999  33334444443220  000 00                   00


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhH--HHHHHHHHHHhcC-CCeEEEeCCCCCCCHHH-------
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQ--RKRLQLARLLAID-RPIWLLDEPSVALDYDG-------  173 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq--kqRv~lAral~~~-p~illlDEPt~~LD~~~-------  173 (229)
                      +.   ...   ......++++.+        .+.++|+++  +|+++.+++++.+ |+++++||||+.+|...       
T Consensus        64 ~~---~~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~  129 (220)
T 2cvh_A           64 QM---AET---RGLNPEEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIA  129 (220)
T ss_dssp             HH---HHT---TTCCHHHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHH
T ss_pred             HH---HHh---cCCChHHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHH
Confidence            00   000   000111122211        233455554  5688888899986 99999999999999732       


Q ss_pred             -HHHHHHHHHHHH-hCCcEEEEEeCChhh
Q 027067          174 -VRLLEYIIAEHR-KKGGIVIVATHLPIQ  200 (229)
Q Consensus       174 -~~~l~~~l~~~~-~~g~tii~vtH~~~~  200 (229)
                       ...+.+.+..+. +.|.|||+++|....
T Consensus       130 ~~~~~~~~L~~l~~~~~~~vi~~~h~~~~  158 (220)
T 2cvh_A          130 ELSRQLQVLLWIARKHNIPVIVINQVHFD  158 (220)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEeeEEEc
Confidence             133444455553 448999999998653

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.70  E-value=1.7e-18  Score=154.04  Aligned_cols=141  Identities=17%  Similarity=0.091  Sum_probs=98.0

Q ss_pred             EEEeEEEE---eCC--eeee---------eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC
Q 027067           12 LLKNVSCM---RNA--QQIL---------RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS   77 (229)
Q Consensus        12 ~l~~l~~~---~~~--~~iL---------~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~   77 (229)
                      ++++++++   |+.  ..+|         +++||.+++|++++|+||||||||||+++|+|+++|++|.|+++|..  ..
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~--e~  214 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP--EL  214 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS--CC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc--cc
Confidence            55666666   642  3444         99999999999999999999999999999999999999999998742  11


Q ss_pred             chhhhhhhcceEee-cccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC
Q 027067           78 GIFHQYKLQLNWLS-LKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      .. ...+..+++++ |++..                                         .++++..++..|+.++..+
T Consensus       215 ~~-~~~~~~v~~v~~q~~~~-----------------------------------------~~~~~~t~~~~i~~~l~~~  252 (361)
T 2gza_A          215 FL-PDHPNHVHLFYPSEAKE-----------------------------------------EENAPVTAATLLRSCLRMK  252 (361)
T ss_dssp             CC-TTCSSEEEEECC---------------------------------------------------CCHHHHHHHHTTSC
T ss_pred             Cc-cccCCEEEEeecCcccc-----------------------------------------ccccccCHHHHHHHHHhcC
Confidence            11 11233455554 22110                                         0134445888999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      |+.+++|||..       ....+++..+.....|++.++|..+ ...+
T Consensus       253 pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~  292 (361)
T 2gza_A          253 PTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELT  292 (361)
T ss_dssp             CSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHH
T ss_pred             CCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHH
Confidence            99999999986       2344566666443457899999854 4443

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.70  E-value=1.3e-20  Score=170.70  Aligned_cols=146  Identities=23%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc--h-hhhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG--I-FHQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~--~-~~~~~~~   86 (229)
                      .++++++++.|+...+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|.+.+.++....  . ..+....
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~  220 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR  220 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred             CCCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence            35667777777666788888 5 3899999999999999999999999999999999999887764210  0 0011223


Q ss_pred             ceEe---------ecccccC--CC----CCHHHhHHHHHHh-------c-CccccHHHHHHHhCCChhhcCCCCCCChhH
Q 027067           87 LNWL---------SLKDAVK--EK----FTVLDNVQWFEVL-------E-GKQGNSLPALELMGLGRLAKEKARMLSMGQ  143 (229)
Q Consensus        87 ~~~~---------~~~~~~~--~~----~tv~e~l~~~~~~-------~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq  143 (229)
                      +++.         .|++.+.  ..    .|+.+++.+...-       . .........+..+++....  .+.+|||||
T Consensus       221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg~  298 (418)
T 1p9r_A          221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGVL  298 (418)
T ss_dssp             GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEEE
T ss_pred             cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHHH
Confidence            3333         3665542  32    4778887654311       0 1112344567788887654  678999999


Q ss_pred             HHHHHHHHHHhcCCCeEE
Q 027067          144 RKRLQLARLLAIDRPIWL  161 (229)
Q Consensus       144 kqRv~lAral~~~p~ill  161 (229)
                      +||  |||+|+.+|++..
T Consensus       299 ~QR--LaraL~~~p~~~~  314 (418)
T 1p9r_A          299 AQR--LVRTLCPDCKEPY  314 (418)
T ss_dssp             EEE--EEEEECTTTCEEE
T ss_pred             HHH--hhhhhcCCCCccC
Confidence            999  9999999999876

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=99.70  E-value=3.9e-17  Score=131.23  Aligned_cols=69  Identities=28%  Similarity=0.358  Sum_probs=60.7

Q ss_pred             hcCCCCCCChhHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          132 AKEKARMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral~~----~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ..+++..||||||||++||++|+.    +|+++||||||++||+.++..+.++++++.+ +.++|++||+...+
T Consensus        58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~~~  130 (173)
T 3kta_B           58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDVMM  130 (173)
T ss_dssp             SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHHHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHHHH
Confidence            456788999999999999999974    4699999999999999999999999998864 46899999997654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.69  E-value=3.5e-18  Score=151.72  Aligned_cols=139  Identities=15%  Similarity=0.124  Sum_probs=91.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEc-CEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWN-GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      -++++++. .+|++++|+||||||||||+|+|+|+.. |++|+|.++ |+....     .....+++++|...+++..++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t-----t~~~~i~~v~q~~~l~dtpgv  278 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT-----TTAARLYHFPHGGDVIDSPGV  278 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC------------------CCCEEEECTTSCEEEECHHH
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc-----eEEEEEEEECCCCEecCcccH
Confidence            35666664 4799999999999999999999999999 999999987 654321     123457888888777777778


Q ss_pred             HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 027067          103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA  182 (229)
Q Consensus       103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~  182 (229)
                      .++..+............++++.+++.++.+..+.+|| ||+||++||+++               +++...+....++.
T Consensus       279 ~e~~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl---------------i~~~R~~~y~~l~~  342 (358)
T 2rcn_A          279 REFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA---------------IAETRFENYHRILE  342 (358)
T ss_dssp             HTCCCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS---------------SCHHHHHHHHHHHH
T ss_pred             HHhhhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC---------------CCHHHHHHHHHHHH
Confidence            77421100000001223467788899999999999999 999999999874               34444445555666


Q ss_pred             HHH
Q 027067          183 EHR  185 (229)
Q Consensus       183 ~~~  185 (229)
                      ++.
T Consensus       343 e~~  345 (358)
T 2rcn_A          343 SMA  345 (358)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            553

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.69  E-value=1.2e-17  Score=133.51  Aligned_cols=111  Identities=18%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067           30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF  109 (229)
Q Consensus        30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  109 (229)
                      +|++.+|+.++|+||||||||||++++++.+.|++|...                   .|          +++.+.+...
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------------------~~----------~~~~~~~~~~   82 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------------------YF----------FDTKDLIFRL   82 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------------------CE----------EEHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------------------EE----------EEHHHHHHHH
Confidence            466788999999999999999999999998876655210                   01          1222222111


Q ss_pred             HHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCC
Q 027067          110 EVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV-ALDYDGVRLLEYIIAEHRKKG  188 (229)
Q Consensus       110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g  188 (229)
                      ..          ....-...                   -+...+.+|++|++|||++ ++|+..++.+.+++....++|
T Consensus        83 ~~----------~~~~~~~~-------------------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~  133 (180)
T 3ec2_A           83 KH----------LMDEGKDT-------------------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNL  133 (180)
T ss_dssp             HH----------HHHHTCCS-------------------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HH----------HhcCchHH-------------------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcC
Confidence            10          00000000                   0111233899999999995 999999999999999887789


Q ss_pred             cEEEEEeCCh
Q 027067          189 GIVIVATHLP  198 (229)
Q Consensus       189 ~tii~vtH~~  198 (229)
                      +++|++||..
T Consensus       134 ~~ii~tsn~~  143 (180)
T 3ec2_A          134 KSTIITTNYS  143 (180)
T ss_dssp             CEEEEECCCC
T ss_pred             CCEEEEcCCC
Confidence            9999999975

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.68  E-value=6.2e-21  Score=153.84  Aligned_cols=155  Identities=15%  Similarity=0.080  Sum_probs=97.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCc
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK  115 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~  115 (229)
                      |++++|+||||||||||+++|++   +.+|.++++|.++...       ...+++++.....+..++++++.+.......
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   71 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM-------VVGGYRPPWESDELLALTWKNITDLTVNFLL   71 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT-------CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh-------hccccccCccchhHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999997   6789999988654221       1234444443333344677776553321100


Q ss_pred             cccHHHHHHHhCCChhhcCCCCCC--ChhHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 027067          116 QGNSLPALELMGLGRLAKEKARML--SMGQRKRLQLAR------LLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK  187 (229)
Q Consensus       116 ~~~~~~~l~~~~l~~~~~~~~~~L--SgGqkqRv~lAr------al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~  187 (229)
                      ... ..+++.+. .....+....+  |+||+|++.++.      +++.+|+...+|+   ++|+..... ++.+..+.+.
T Consensus        72 ~~~-~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~  145 (189)
T 2bdt_A           72 AQN-DVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGID  145 (189)
T ss_dssp             TTC-EEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCC
T ss_pred             cCC-cEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCC
Confidence            000 00001010 11111112234  889998988888      8889998888884   899987767 7777777666


Q ss_pred             CcEEEEEeCC-hhhHHhhhc
Q 027067          188 GGIVIVATHL-PIQIEDAMN  206 (229)
Q Consensus       188 g~tii~vtH~-~~~~~~~~~  206 (229)
                      +.++|.+||. +++++++++
T Consensus       146 ~~~ii~tsh~~~~~~e~~~~  165 (189)
T 2bdt_A          146 ERYFYNTSHLQPTNLNDIVK  165 (189)
T ss_dssp             TTSEEECSSSCGGGHHHHHH
T ss_pred             ccEEEeCCCCChhhHHHHHH
Confidence            7899999998 888887764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.66  E-value=5.8e-17  Score=126.94  Aligned_cols=92  Identities=22%  Similarity=0.314  Sum_probs=71.9

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      +|+++     +|+.++|+||||||||||+++++|...+ +|  .+++++.++..                      .   
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~----------------------~---   78 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL----------------------T---   78 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC----------------------C---
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH----------------------H---
Confidence            55666     8999999999999999999999999876 46  55554322110                      0   


Q ss_pred             HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 027067          103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA  182 (229)
Q Consensus       103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~  182 (229)
                                                                       +++.+|++|++|||++ ++...++.+.++++
T Consensus        79 -------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~  108 (149)
T 2kjq_A           79 -------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFN  108 (149)
T ss_dssp             -------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHH
T ss_pred             -------------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHH
Confidence                                                             2356899999999998 66666888999999


Q ss_pred             HHHhCCcE-EEEEeCC
Q 027067          183 EHRKKGGI-VIVATHL  197 (229)
Q Consensus       183 ~~~~~g~t-ii~vtH~  197 (229)
                      ...++|++ +|++||.
T Consensus       109 ~~~~~g~~~iiits~~  124 (149)
T 2kjq_A          109 RFRNSGKGFLLLGSEY  124 (149)
T ss_dssp             HHHHHTCCEEEEEESS
T ss_pred             HHHHcCCcEEEEECCC
Confidence            98888888 8888884

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.66  E-value=2.9e-16  Score=130.28  Aligned_cols=137  Identities=15%  Similarity=0.197  Sum_probs=74.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC--CCCC-----CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG--FSKP-----SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD  104 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p-----~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e  104 (229)
                      -+++|++++|+||||||||||++.|++  +.+|     ..|.+++++.+........+....+++.++.        +.+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--------~~~   91 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--------VLD   91 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH--------HHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH--------Hhh
Confidence            478999999999999999999999999  5655     5788888876521111011122222322110        111


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHH-HHHHHHHh--cCCCeEEEeCCCCCCCHH-------H-
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKR-LQLARLLA--IDRPIWLLDEPSVALDYD-------G-  173 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR-v~lAral~--~~p~illlDEPt~~LD~~-------~-  173 (229)
                      |+.+                           ....+..+... +.-+..++  .+|+++++|||++.+|..       . 
T Consensus        92 ~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~  144 (243)
T 1n0w_A           92 NVAY---------------------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSA  144 (243)
T ss_dssp             TEEE---------------------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHH
T ss_pred             CeEE---------------------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHH
Confidence            1100                           01123333221 22222222  589999999999999975       2 


Q ss_pred             ----HHHHHHHHHHH-HhCCcEEEEEeCChhhHHh
Q 027067          174 ----VRLLEYIIAEH-RKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       174 ----~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~  203 (229)
                          ...+...+..+ ++.|.|||+++|.....+.
T Consensus       145 r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~  179 (243)
T 1n0w_A          145 RQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDG  179 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCEEEEEC--------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCC
Confidence                22333334443 3459999999998766554

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.66  E-value=3.8e-19  Score=142.72  Aligned_cols=140  Identities=16%  Similarity=0.104  Sum_probs=81.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEeCCCCch--hhhhh-hcce----EeecccccCCCCCHHHhH
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHDITQSGI--FHQYK-LQLN----WLSLKDAVKEKFTVLDNV  106 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~--~~~~~-~~~~----~~~~~~~~~~~~tv~e~l  106 (229)
                      ++++|+|+||||||||+++|+|+++|+   .|.|.++|.++.....  ...++ ..++    +++|+..++    +.+. 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~~-   77 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRRV-   77 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEEC-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----EecC-
Confidence            689999999999999999999999998   8999999988543220  12233 3456    666665443    1110 


Q ss_pred             HHHHHhcCccccHHHHHHH-h-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE-------EEeCCCCC---CCHHHH
Q 027067          107 QWFEVLEGKQGNSLPALEL-M-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW-------LLDEPSVA---LDYDGV  174 (229)
Q Consensus       107 ~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il-------llDEPt~~---LD~~~~  174 (229)
                        ....   .....+++.. + +++...-.   .|||||+||++||||++.+|++.       .-|.|..+   +|....
T Consensus        78 --~~~~---~a~l~~~i~~~l~g~dt~i~E---glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~~~~~  149 (171)
T 2f1r_A           78 --SEEE---GNDLDWIYERYLSDYDLVITE---GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRRDEV  149 (171)
T ss_dssp             --CHHH---HTCHHHHHHHHTTTCSEEEEE---SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEECTTCH
T ss_pred             --Chhh---hhCHHHHHHhhCCCCCEEEEC---CcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccCcccH
Confidence              0000   1123344443 3 44332222   39999999999999999999873       23555322   233344


Q ss_pred             HHHHHHHHHHHhCCc
Q 027067          175 RLLEYIIAEHRKKGG  189 (229)
Q Consensus       175 ~~l~~~l~~~~~~g~  189 (229)
                      +.+.+++.+...+|.
T Consensus       150 ~~~a~~i~~~~~~~~  164 (171)
T 2f1r_A          150 ERIAEFILSLLREGG  164 (171)
T ss_dssp             HHHHHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhccC
Confidence            566666655444443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.65  E-value=6.3e-18  Score=152.96  Aligned_cols=156  Identities=12%  Similarity=0.054  Sum_probs=94.1

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC-----------CCccEEEEcCEeCCCCchhhhhhhcceEeeccc
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK-----------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD   94 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-----------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~   94 (229)
                      -++++|+++.|++++|+|+|||||||||++|+|..+           |+.|.|.+++.            .. ..+.+.+
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~------------~~-~~l~Dtp  213 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE------------ER-FTLADIP  213 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS------------CE-EEEEECC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc------------ce-EEEEecc
Confidence            479999999999999999999999999999999842           33333333220            00 0111222


Q ss_pred             ccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 027067           95 AVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGV  174 (229)
Q Consensus        95 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~  174 (229)
                      .+...  ..++..+.........++..++..+++.   ++++.+||+||+|++.+|++|+..|.++++    +.+|....
T Consensus       214 Gli~~--a~~~~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          214 GIIEG--ASEGKGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             CCCCC--GGGSCCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             ccccc--hhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence            22111  1111000000000001111223333443   566788999999999999999999999999    99998755


Q ss_pred             HHHHHHHHHHHhCCcEEEEEe-CChhhHHh
Q 027067          175 RLLEYIIAEHRKKGGIVIVAT-HLPIQIED  203 (229)
Q Consensus       175 ~~l~~~l~~~~~~g~tii~vt-H~~~~~~~  203 (229)
                      +.+..+...+++.+.+++++| |.-.-+++
T Consensus       285 ~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          285 EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            555555555555576766655 44333433

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=99.64  E-value=5.7e-20  Score=170.38  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=113.8

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe------------
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL------------   90 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~------------   90 (229)
                      ..+++++++.+++|++++|+||||||||||+++|+|+++|++|.|++.|.+-.....    ...+.+.            
T Consensus       247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~----~~~v~~~~r~~~~~~~~~~  322 (511)
T 2oap_1          247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH----ENWIAEVTRTGMGEGEIDM  322 (511)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC----SSEEEEECBCCSSSCCBCH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC----CCeEEEEeecccccCCcCH
Confidence            357889999999999999999999999999999999999999999998864111100    0011111            


Q ss_pred             --------eccc--ccCCCCCHHHhHHHHHHhc-Cc-------cccHHHHHHHhCCCh-----h----hc---CCCCCCC
Q 027067           91 --------SLKD--AVKEKFTVLDNVQWFEVLE-GK-------QGNSLPALELMGLGR-----L----AK---EKARMLS  140 (229)
Q Consensus        91 --------~~~~--~~~~~~tv~e~l~~~~~~~-~~-------~~~~~~~l~~~~l~~-----~----~~---~~~~~LS  140 (229)
                              .|+|  .++..++..|++.++.... +.       ...+.+++.++....     .    .+   .....+|
T Consensus       323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s  402 (511)
T 2oap_1          323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR  402 (511)
T ss_dssp             HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred             HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence                    1111  2334556666655443332 21       234566666654321     1    11   2334689


Q ss_pred             hhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE--EeCChhhHHhhhcc
Q 027067          141 MGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV--ATHLPIQIEDAMNL  207 (229)
Q Consensus       141 gGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~--vtH~~~~~~~~~~~  207 (229)
                      +||+||+++|.          + | |+|||+.....+.+.+..+...+.|+++  +||++++++..+..
T Consensus       403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~  459 (511)
T 2oap_1          403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV  459 (511)
T ss_dssp             SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred             CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence            99999987752          1 7 9999998776666666666666888875  99999999887753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.62  E-value=3.2e-17  Score=142.43  Aligned_cols=116  Identities=16%  Similarity=0.086  Sum_probs=84.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhh-hcceEeecccccC-----CCCCH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYK-LQLNWLSLKDAVK-----EKFTV  102 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~tv  102 (229)
                      ++.+|++++|+||||||||||+|+|+ +.+|++|+|.+   +|++++....  ... ..++|++|.+.+.     +.+|+
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~~g~v~d~pg~~~~~l~~~lt~  237 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGKGSFVGDTPGFSKVEATMFVKP  237 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCCCcEEEECcCcCcCcccccCCH
Confidence            44579999999999999999999999 99999999999   8988765421  112 3689999988653     67888


Q ss_pred             HHhH--HHHH------HhcC------ccccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHH
Q 027067          103 LDNV--QWFE------VLEG------KQGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLAR  151 (229)
Q Consensus       103 ~e~l--~~~~------~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAr  151 (229)
                       ||+  .|..      .+..      ....+.++++.++|.+ ..++++..|||.++|++.|||
T Consensus       238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence             777  3321      1111      1234778999999986 788999999999999999986

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.60  E-value=1.1e-15  Score=133.84  Aligned_cols=140  Identities=19%  Similarity=0.096  Sum_probs=75.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHC-CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG-FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQ  116 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G-l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~  116 (229)
                      .+.|.||||+|||||+++++| ++.|+.|.+.++|.+.....   .....++++++...+....+  +. .    . ...
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~-~----~-~~~  106 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS---NRKLELNVVSSPYHLEITPS--DM-G----N-NDR  106 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------------CCEECSSEEEECCC------------CCH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc---cccceeeeecccceEEecHh--hc-C----C-cch
Confidence            499999999999999999999 88999999999987654321   11334566665443211111  00 0    0 000


Q ss_pred             ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067          117 GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       117 ~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                      ....+.++.+......+... +|||           +..+|+++|+|||++ ||..+...+.+.+.+.. .+.++|++||
T Consensus       107 ~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~~~~~Il~t~  172 (354)
T 1sxj_E          107 IVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCD  172 (354)
T ss_dssp             HHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEES
T ss_pred             HHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-CCCEEEEEeC
Confidence            01223333322111111111 5666           778999999999999 99999999999888764 4689999999


Q ss_pred             ChhhHH
Q 027067          197 LPIQIE  202 (229)
Q Consensus       197 ~~~~~~  202 (229)
                      +++.+.
T Consensus       173 ~~~~l~  178 (354)
T 1sxj_E          173 SMSPII  178 (354)
T ss_dssp             CSCSSC
T ss_pred             CHHHHH
Confidence            976543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.59  E-value=3.1e-18  Score=149.11  Aligned_cols=139  Identities=17%  Similarity=0.149  Sum_probs=98.6

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEE-------------------eCCcEEEEEcCCCccHHHHHHHHHCCCC--CCccEE
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISI-------------------HDGGALVLTGTNGSGKSTFLRMLAGFSK--PSAGEI   67 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i-------------------~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I   67 (229)
                      .+|+++||++.|  .++++++++.+                   .+|+++||+||||||||||+++|+|++.  |++|+|
T Consensus        36 ~~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i  113 (308)
T 1sq5_A           36 EDLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV  113 (308)
T ss_dssp             TTCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             cccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence            468899999989  47899999988                   9999999999999999999999999988  999999


Q ss_pred             EE---cCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHH
Q 027067           68 LW---NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQR  144 (229)
Q Consensus        68 ~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk  144 (229)
                      .+   +|.....     ..+..++++ +...+++.+++.+++.+...+.....             ....+....+.+  
T Consensus       114 ~vi~~d~~~~~~-----~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~-------------~i~~P~~~~~~~--  172 (308)
T 1sq5_A          114 ELITTDGFLHPN-----QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP-------------NVTAPVYSHLIY--  172 (308)
T ss_dssp             EEEEGGGGBCCH-----HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS-------------CEEECCEETTTT--
T ss_pred             EEEecCCccCcH-----HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC-------------ceeccccccccc--
Confidence            99   8866421     123456777 66666677899998877654322110             011111222222  


Q ss_pred             HHHHHHHHHhcCCCeEEEeCCCCCCC
Q 027067          145 KRLQLARLLAIDRPIWLLDEPSVALD  170 (229)
Q Consensus       145 qRv~lAral~~~p~illlDEPt~~LD  170 (229)
                      +|+..+.+.+.+++++|+|.|....+
T Consensus       173 ~~~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          173 DVIPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             CcccccceecCCCCEEEECchhhCCC
Confidence            33332234456789999999998877

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.56  E-value=5.6e-19  Score=151.53  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=93.0

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKEK   99 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   99 (229)
                      +...+++++++++++|  ++|+||||||||||+|+|+|...+  |.|.++|.++..... ......++++++.. ...+.
T Consensus        31 ~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~-~~~~~~i~~vf~~a~~~~p~  105 (274)
T 2x8a_A           31 RNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYV-GESERAVRQVFQRAKNSAPC  105 (274)
T ss_dssp             HSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTT-HHHHHHHHHHHHHHHHTCSE
T ss_pred             hCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhh-hHHHHHHHHHHHHHHhcCCC
Confidence            4556889999999999  999999999999999999999876  799999987754321 12233455555543 33444


Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      +++.|++......+.. ..      .-......++.+.+|||||+||+.+++|+.++|++|  |||+.
T Consensus       106 i~~~Deid~~~~~r~~-~~------~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~  164 (274)
T 2x8a_A          106 VIFFDEVDALCPRRSD-RE------TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL  164 (274)
T ss_dssp             EEEEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred             eEeeehhhhhhcccCC-Cc------chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence            5566665432111100 00      001234556778899999999999999999999985  99975

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.56  E-value=1.4e-16  Score=138.21  Aligned_cols=109  Identities=14%  Similarity=0.072  Sum_probs=74.4

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhhhcceEeecccc------------
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYKLQLNWLSLKDA------------   95 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~~~~~~~~~~~~------------   95 (229)
                      |++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|++++...... ....+++++|.+.            
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~-~~~~~g~v~q~p~~~~~~~~~~~~~  242 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLL-KFDFGGYVVDTPGFANLEINDIEPE  242 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEE-ECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEE-EcCCCCEEEECcCCCccCCCcCCHH
Confidence            345679999999999999999999999999999999999   898876533111 1135788888764            


Q ss_pred             ----cCCCCCHHHhHHHHHHhc--CccccHHHHHHHhCCC-hhhcCCCCCCCh
Q 027067           96 ----VKEKFTVLDNVQWFEVLE--GKQGNSLPALELMGLG-RLAKEKARMLSM  141 (229)
Q Consensus        96 ----~~~~~tv~e~l~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LSg  141 (229)
                          +++.+|+ +|+.+.....  ....++.++++.++|. +..+++++.||+
T Consensus       243 ~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse  294 (301)
T 1u0l_A          243 ELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE  294 (301)
T ss_dssp             HHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence                5788888 9887742111  1234578899999995 778888988885

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=99.56  E-value=3.4e-15  Score=134.42  Aligned_cols=133  Identities=14%  Similarity=0.088  Sum_probs=76.9

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHH--HHHCCCCCCcc-----EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLR--MLAGFSKPSAG-----EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLD  104 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~--~i~Gl~~p~~G-----~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e  104 (229)
                      -|++|++++|+||||||||||++  ++.++.+++.|     .+++++++........+....+++.++        ++.+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~--------~vle  245 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD--------DALN  245 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH--------HHHH
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH--------hHhh
Confidence            58899999999999999999999  55687776544     788887653211111112223332211        2233


Q ss_pred             hHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHH--HHHHHHHHH--hcCCCeEEEeCCCCCCCHHHH------
Q 027067          105 NVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQR--KRLQLARLL--AIDRPIWLLDEPSVALDYDGV------  174 (229)
Q Consensus       105 ~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqk--qRv~lAral--~~~p~illlDEPt~~LD~~~~------  174 (229)
                      |+.+.                            ....++.  +.+.-+..+  ..+|+++++|||++.+|....      
T Consensus       246 ni~~~----------------------------~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~  297 (400)
T 3lda_A          246 NVAYA----------------------------RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELS  297 (400)
T ss_dssp             TEEEE----------------------------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHH
T ss_pred             cEEEe----------------------------ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchH
Confidence            32111                            0111222  222222222  257999999999999996422      


Q ss_pred             ------HHHHHHHHHHH-hCCcEEEEEeCChhh
Q 027067          175 ------RLLEYIIAEHR-KKGGIVIVATHLPIQ  200 (229)
Q Consensus       175 ------~~l~~~l~~~~-~~g~tii~vtH~~~~  200 (229)
                            ..+...|..+. +.|.|||+++|....
T Consensus       298 ~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~  330 (400)
T 3lda_A          298 ARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQ  330 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEEEeeccc
Confidence                  34555666654 459999999998443

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=99.54  E-value=8.5e-15  Score=130.34  Aligned_cols=71  Identities=27%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             CCCCCCChhHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          134 EKARMLSMGQRKRL------QLARLLAID-RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       134 ~~~~~LSgGqkqRv------~lAral~~~-p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +++..|||||+||+      ++|++++.+ |++|||||||++||+..+..+.+.+..+. .+.+||++||++. +...+|
T Consensus       276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~-~~~~~d  353 (371)
T 3auy_A          276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE-LEDVAD  353 (371)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG-GGGGCS
T ss_pred             cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH-HHhhCC
Confidence            45679999999988      567899999 99999999999999999999999998864 3568999999975 455444

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.54  E-value=8.6e-19  Score=154.03  Aligned_cols=172  Identities=16%  Similarity=0.171  Sum_probs=115.9

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCC-------cEEEEEcCCCccHHHHHHHHHCCC----CCCccEEEEcCEeCCCC
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDG-------GALVLTGTNGSGKSTFLRMLAGFS----KPSAGEILWNGHDITQS   77 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~G-------e~~~iiG~NGsGKSTLl~~i~Gl~----~p~~G~I~~~g~~~~~~   77 (229)
                      .+++.++++..|++..+++++++.+++|       +.++|+||||+|||||+++|+|.+    .+++|.+..++.++.. 
T Consensus        17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~-   95 (334)
T 1in4_A           17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA-   95 (334)
T ss_dssp             CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH-
T ss_pred             HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH-
Confidence            3567778888888888999999999887       899999999999999999999998    6667776655443321 


Q ss_pred             chhhh-hhhcceEeecccccCCCCCHHHhHHHHHHhcCc---------cccHHHHHHHhCCChhhcCCCCCCChhHHHHH
Q 027067           78 GIFHQ-YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK---------QGNSLPALELMGLGRLAKEKARMLSMGQRKRL  147 (229)
Q Consensus        78 ~~~~~-~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~---------~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv  147 (229)
                       .... ....+.++.+.+.+.+  ++.|++.........         ...+...+..+++.. ...++..||+|++||+
T Consensus        96 -~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~  171 (334)
T 1in4_A           96 -ILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRF  171 (334)
T ss_dssp             -HHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTC
T ss_pred             -HHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhc
Confidence             0111 1345778887766654  677776432211110         011222333344433 5677889999999998


Q ss_pred             HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          148 QLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       148 ~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      .++                .+||+...+.+.++++...+. +     ++|+.+.+..+++
T Consensus       172 ~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~~~~~ia~  210 (334)
T 1in4_A          172 GII----------------LELDFYTVKELKEIIKRAASLMD-----VEIEDAAAEMIAK  210 (334)
T ss_dssp             SEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHHHHHHHHH
T ss_pred             Cce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHHHHHHHHH
Confidence            655                778887788888888776432 3     3688777766654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.51  E-value=2.9e-16  Score=135.76  Aligned_cols=121  Identities=12%  Similarity=0.025  Sum_probs=80.8

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHH--
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV--  111 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~--  111 (229)
                      .++.+++|+|++|||||||.+.|++++.+. |      .         . ...+.+++++..+++. +..+|+.+...  
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~---------~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~   90 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G---------G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNN   90 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G---------G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C---------C-CceEEEeccccccCCh-HHHHHHhcccccc
Confidence            468899999999999999999999998763 2      0         0 1123344777665543 67777765321  


Q ss_pred             --hc--Cc-----cccHHHHHHHhCCC--------hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 027067          112 --LE--GK-----QGNSLPALELMGLG--------RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD  172 (229)
Q Consensus       112 --~~--~~-----~~~~~~~l~~~~l~--------~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~  172 (229)
                        ..  +.     .....+.++.+.-.        -....+...+||||+||+.+|++.+.+|+|+|+||||+++|+.
T Consensus        91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence              10  00     11233445554332        1134566799999999999984333399999999999999985

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.49  E-value=1.5e-14  Score=125.23  Aligned_cols=142  Identities=18%  Similarity=0.127  Sum_probs=97.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      +.++++++.|+...  ++++|+  +|++++++|+||+||||+++.|+|.+.+..|+|.+.+.++......          
T Consensus        77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~----------  142 (295)
T 1ls1_A           77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR----------  142 (295)
T ss_dssp             HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH----------
T ss_pred             HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH----------
Confidence            34556666776543  788888  9999999999999999999999999998899999988776431100          


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC-CCCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP-SVAL  169 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP-t~~L  169 (229)
                                   +.+.             .+.+..++.-....  ...+-.+.+|.+++++...+++++|+||| +.++
T Consensus       143 -------------~ql~-------------~~~~~~~l~~~~~~--~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~  194 (295)
T 1ls1_A          143 -------------EQLR-------------LLGEKVGVPVLEVM--DGESPESIRRRVEEKARLEARDLILVDTAGRLQI  194 (295)
T ss_dssp             -------------HHHH-------------HHHHHHTCCEEECC--TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSC
T ss_pred             -------------HHHH-------------HhcccCCeEEEEcC--CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccc
Confidence                         0000             01122344322100  01233345788999998899999999999 9999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEe
Q 027067          170 DYDGVRLLEYIIAEHRKKGGIVIVAT  195 (229)
Q Consensus       170 D~~~~~~l~~~l~~~~~~g~tii~vt  195 (229)
                      |......+..+..... ...+++++.
T Consensus       195 d~~~~~~l~~~~~~~~-~~~~~lv~~  219 (295)
T 1ls1_A          195 DEPLMGELARLKEVLG-PDEVLLVLD  219 (295)
T ss_dssp             CHHHHHHHHHHHHHHC-CSEEEEEEE
T ss_pred             cHHHHHHHHHHhhhcC-CCEEEEEEe
Confidence            9887777777766553 344554443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.49  E-value=3.3e-17  Score=133.77  Aligned_cols=152  Identities=17%  Similarity=0.142  Sum_probs=78.1

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC-------------CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK-------------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~-------------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (229)
                      ++|++++|+||||||||||+++|+|+++             |..|+  ++|.++...+. ..++..+   .|... ....
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~-~~~~~~i---~~~~~-l~~~   74 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTR-EMMQRDI---AAGDF-IEHA   74 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCH-HHHHHHH---HHTCE-EEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccH-HHHHHHH---HcCCC-Eeee
Confidence            5799999999999999999999999875             66776  35654432221 1111111   11111 1112


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHH----HHHHHH-HHhcCCCeEEEeCCCCCCCHHHHH
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRK----RLQLAR-LLAIDRPIWLLDEPSVALDYDGVR  175 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkq----Rv~lAr-al~~~p~illlDEPt~~LD~~~~~  175 (229)
                      ++.+|+ ++.    ....+.++++.-... ..+..   + .|-++    ++ .|+ +++.+|++++|||||+++|..+.+
T Consensus        75 ~~~~n~-~g~----~~~~i~~~~~~~~~~-~~~~~---~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~  143 (198)
T 1lvg_A           75 EFSGNL-YGT----SKEAVRAVQAMNRIC-VLDVD---L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETEE  143 (198)
T ss_dssp             EETTEE-EEE----EHHHHHHHHHTTCEE-EEECC---H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred             eecCcc-CCC----CHHHHHHHHHcCCcE-EEECC---H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence            233332 110    111222223211000 00000   0 01110    11 456 788899999999999999988777


Q ss_pred             HHHHHHHHHHh--------CCcEEEEEeCChhhHHh
Q 027067          176 LLEYIIAEHRK--------KGGIVIVATHLPIQIED  203 (229)
Q Consensus       176 ~l~~~l~~~~~--------~g~tii~vtH~~~~~~~  203 (229)
                      .+.+.+....+        ...-.|++.++++....
T Consensus       144 ~i~~~l~~~~~~~~~a~~~~~~D~iivnd~le~a~~  179 (198)
T 1lvg_A          144 SLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYA  179 (198)
T ss_dssp             HHHHHHHHHHHHTTGGGSTTTCSEEEECSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhccCCceEEEECCCHHHHHH
Confidence            77666655432        22335566666554433

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.48  E-value=1.6e-15  Score=132.03  Aligned_cols=113  Identities=15%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE---cCEeCCCCchhhhhhhcceEeecccccCC----CCCHH
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW---NGHDITQSGIFHQYKLQLNWLSLKDAVKE----KFTVL  103 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~tv~  103 (229)
                      +++.+|++++|+||||||||||+|+|+|+.+|++|+|.+   +|+.++...  ..+....++++|.+.+..    .+|+ 
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~--~~~~~~~g~v~dtpg~~~~~l~~lt~-  244 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV--ELIHTSGGLVADTPGFSSLEFTDIEE-  244 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC--CEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH--HHhhcCCEEEecCCCccccccccCCH-
Confidence            567799999999999999999999999999999999998   888776432  112223789999887765    5788 


Q ss_pred             HhHH--HHHH--h------cC------ccccHHHHHHHhCCChhhcCCCCCCChhHHHH
Q 027067          104 DNVQ--WFEV--L------EG------KQGNSLPALELMGLGRLAKEKARMLSMGQRKR  146 (229)
Q Consensus       104 e~l~--~~~~--~------~~------~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqR  146 (229)
                      |++.  |...  .      ..      ....+.++++.+++.+...+....|+.|++||
T Consensus       245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~  303 (307)
T 1t9h_A          245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR  303 (307)
T ss_dssp             HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence            8873  2211  1      11      12347789999999876666667777788773

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.47  E-value=1.9e-16  Score=129.77  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=69.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCC---CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKP---SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWF  109 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~  109 (229)
                      .++|++++|+||||||||||+++|+|+++|   +.|.|.++|..+....     ....+.... ....   .+.+.-.  
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~-----~~~~~~~~~-~~~~---~~~~~~~--   87 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL-----LEPRGLLPR-KGAP---ETFDFEG--   87 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH-----HGGGTCGGG-TTSG---GGBCHHH--
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH-----HHHhccccc-CCCC---chhhHHH--
Confidence            478999999999999999999999999985   5788888876553211     111111000 0000   0001000  


Q ss_pred             HHhcCccccHHHHHHHh--C--CChhhcCCCCCCChhHHHHHHHH-HHHhcCCCeEEEeCCC
Q 027067          110 EVLEGKQGNSLPALELM--G--LGRLAKEKARMLSMGQRKRLQLA-RLLAIDRPIWLLDEPS  166 (229)
Q Consensus       110 ~~~~~~~~~~~~~l~~~--~--l~~~~~~~~~~LSgGqkqRv~lA-ral~~~p~illlDEPt  166 (229)
                               ..+.+..+  +  +.-........+|+||+||+++| ++++.++.++++|||.
T Consensus        88 ---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~  140 (208)
T 3c8u_A           88 ---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG  140 (208)
T ss_dssp             ---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred             ---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence                     01111111  1  11011223446799999999998 8889999888899984

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.47  E-value=1.9e-16  Score=142.21  Aligned_cols=155  Identities=8%  Similarity=-0.008  Sum_probs=103.0

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC------------CCCCCccEEEEcCEeCCCCchhhhhhhcc---eEeeccccc
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG------------FSKPSAGEILWNGHDITQSGIFHQYKLQL---NWLSLKDAV   96 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G------------l~~p~~G~I~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~   96 (229)
                      .+.+|..++|+|+||||||||+|+|+|            .+.|+.|.|.+.|..+..........+.+   ..+.+.+.+
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl   95 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL   95 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence            457899999999999999999999999            66799999999874331110000011111   245566667


Q ss_pred             CCCCCHHHhH--HHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHH
Q 027067           97 KEKFTVLDNV--QWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDR--PIWLLDEPSVALDYD  172 (229)
Q Consensus        97 ~~~~tv~e~l--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p--~illlDEPt~~LD~~  172 (229)
                      +...+..+++  .+...++...    .++..++..  .+..+..+|++.            +|  +++++|||+.++|+.
T Consensus        96 ~~~~s~~e~L~~~fl~~ir~~d----~il~Vvd~~--~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~  157 (392)
T 1ni3_A           96 TKGASTGVGLGNAFLSHVRAVD----AIYQVVRAF--DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAE  157 (392)
T ss_dssp             CCCCCSSSSSCHHHHHHHTTCS----EEEEEEECC--CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHH----HHHHHHhcc--ccceeeeecccc------------CcchhhhhchhhhHHHHHH
Confidence            7766665554  3333322211    011111111  144555677763            89  999999999999999


Q ss_pred             HHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhc
Q 027067          173 GVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       173 ~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      ..+..+..+... .+.|.|++  +|....+++.++
T Consensus       158 ~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~  190 (392)
T 1ni3_A          158 FVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIE  190 (392)
T ss_dssp             HHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHH
Confidence            998888888887 66677754  999888777653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.46  E-value=3.3e-14  Score=123.78  Aligned_cols=99  Identities=16%  Similarity=0.195  Sum_probs=76.1

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHH
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ  107 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~  107 (229)
                      .++++..+|++++|+|+|||||||+++.|++.+.++.|+|.+.+.|.....                       ..+.+ 
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~-----------------------a~eqL-  151 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-----------------------AIEQL-  151 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-----------------------HHHHH-
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH-----------------------HHHHH-
Confidence            356667889999999999999999999999999998899998876653210                       01111 


Q ss_pred             HHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHH---HHHHHHhcCCCeEEEeCCCC
Q 027067          108 WFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRL---QLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv---~lAral~~~p~illlDEPt~  167 (229)
                                  ..+.+.+++..     +...|+|+.+++   ++++++..+|+++|+|||..
T Consensus       152 ------------~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          152 ------------KIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ------------HHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ------------HHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                        12334455542     236789999999   99999999999999999975

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=99.44  E-value=1.1e-16  Score=133.04  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH-CCCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA-GFSKP   62 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~-Gl~~p   62 (229)
                      .+..+++||++++|++++|+||||||||||+++|+ |++++
T Consensus        14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~   54 (231)
T 3lnc_A           14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN   54 (231)
T ss_dssp             --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred             hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence            34678999999999999999999999999999999 99843

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.43  E-value=2.5e-14  Score=131.35  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=52.8

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      +.+++.  .+..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus         9 l~~l~~--~~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~   68 (483)
T 3euj_A            9 FRSLTL--INWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA   68 (483)
T ss_dssp             EEEEEE--EEETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred             eeEEEE--eccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence            444443  335689999999999 999999999999999999999999999999999998765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.35  E-value=9.8e-13  Score=113.90  Aligned_cols=127  Identities=13%  Similarity=0.169  Sum_probs=80.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHh
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVL  112 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~  112 (229)
                      .+|++++|+|+|||||||+++.|++.+.+++| +|.+-+.|..                       ..++.+.+..+.. 
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~-----------------------r~~a~eqL~~~~~-  158 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY-----------------------RIAAVEQLKTYAE-  158 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS-----------------------STTHHHHHHHHHT-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc-----------------------cchHHHHHHHHHH-
Confidence            47999999999999999999999999988788 5655443321                       1233444433211 


Q ss_pred             cCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH---hCCc
Q 027067          113 EGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR---KKGG  189 (229)
Q Consensus       113 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~---~~g~  189 (229)
                                  ..++....     ..+ +..-+.++++  +.+|+++|+|  |+|+|+.....+.++...+.   ..+.
T Consensus       159 ------------~~gl~~~~-----~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~  216 (296)
T 2px0_A          159 ------------LLQAPLEV-----CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQS  216 (296)
T ss_dssp             ------------TTTCCCCB-----CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEE
T ss_pred             ------------hcCCCeEe-----cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeE
Confidence                        12222110     012 2334566664  4899999999  89999876655555444332   2233


Q ss_pred             EEEE-EeCChhhHHhhhc
Q 027067          190 IVIV-ATHLPIQIEDAMN  206 (229)
Q Consensus       190 tii~-vtH~~~~~~~~~~  206 (229)
                      ++++ +||..+.+.++++
T Consensus       217 ~lVl~at~~~~~~~~~~~  234 (296)
T 2px0_A          217 FLVLSATAKYEDMKHIVK  234 (296)
T ss_dssp             EEEEETTBCHHHHHHHTT
T ss_pred             EEEEECCCCHHHHHHHHH
Confidence            4444 4999888887654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.33  E-value=4.4e-17  Score=139.18  Aligned_cols=138  Identities=15%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             EEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeec
Q 027067           13 LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSL   92 (229)
Q Consensus        13 l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~   92 (229)
                      ++++.+.|++..+++++++++++|  ++|+||||||||||+++|++...  .|.|.+++.++..... ......+.++++
T Consensus        52 l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~-~~~~~~i~~~~~  126 (278)
T 1iy2_A           52 LKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDLFE  126 (278)
T ss_dssp             HHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHh-hHHHHHHHHHHH
Confidence            344555566667899999999999  99999999999999999999885  7899998765432111 111223444444


Q ss_pred             ccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           93 KDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        93 ~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ... ..+.+++.|++.........     .....+.         .++.+.+|||||+||+.+++|+..+|++  +|++.
T Consensus       127 ~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~l  195 (278)
T 1iy2_A          127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL  195 (278)
T ss_dssp             HHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHHHHHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred             HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHHHHHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence            432 34455677777433211100     0011111         1223457899999999999999999987  67764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.32  E-value=1.1e-12  Score=108.71  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             eeeee-eEEEeCCcEEEEEcCCCccHHHHH-HHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCH
Q 027067           25 ILRHV-NISIHDGGALVLTGTNGSGKSTFL-RMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTV  102 (229)
Q Consensus        25 iL~~v-sl~i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv  102 (229)
                      .|+.+ .--+++|++++|+||||||||||+ +++.+..+...+.+++..... .... .+....+++.++.......+++
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~-~~~~~~~g~~~~~~~~~~~l~~   88 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQV-RQNMAQFGWDVKPYEEKGMFAM   88 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHH-HHHHHTTTCCCHHHHHHTSEEE
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHH-HHHHHHcCCCHHHHhhCCcEEE
Confidence            34444 456899999999999999999995 455555554445555554321 1111 1111223322211100001111


Q ss_pred             HHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh--cCCCeEEEeCCCCCC--CHHH-HHHH
Q 027067          103 LDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA--IDRPIWLLDEPSVAL--DYDG-VRLL  177 (229)
Q Consensus       103 ~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~illlDEPt~~L--D~~~-~~~l  177 (229)
                      .+.         ...       .++.....+.....-+....+....++.++  .+|+++++|+|++.+  |+.. ++.+
T Consensus        89 ~~~---------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l  152 (247)
T 2dr3_A           89 VDA---------FTA-------GIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII  152 (247)
T ss_dssp             EEC---------STT-------TTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred             Eec---------chh-------hcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence            110         000       000000000011111122223333333333  589999999999988  5533 4455


Q ss_pred             HHHHHHHHhCCcEEEEEeCChhh
Q 027067          178 EYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       178 ~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      ..+.+.+++.|.|||+++|....
T Consensus       153 ~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          153 LQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HHHHHHHHHTTCEEEEEEECC--
T ss_pred             HHHHHHHHHCCCeEEEEecCCCC
Confidence            56655566779999999998664

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.31  E-value=6.1e-13  Score=107.00  Aligned_cols=36  Identities=22%  Similarity=0.166  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      .+.+|++++.+|+++++|  ||++|..+.+.+.+.+.+
T Consensus       153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            467899999999999999  999999988887776654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.30  E-value=7.6e-17  Score=135.63  Aligned_cols=141  Identities=15%  Similarity=0.127  Sum_probs=91.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      .+++++.+.|++..+++++++++++|  ++|+||||||||||+++|++...  .|.|.+++.++..... ......+.++
T Consensus        26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~-~~~~~~i~~~  100 (254)
T 1ixz_A           26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDL  100 (254)
T ss_dssp             HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCT-THHHHHHHHH
T ss_pred             HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHh-hHHHHHHHHH
Confidence            34455555666677899999999999  99999999999999999999875  7899998765432111 1112233444


Q ss_pred             ecccc-cCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           91 SLKDA-VKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        91 ~~~~~-~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++... ..+.+.+.|++.........     .....+.         .++....|||||+||+.+++|+..+|++  +|+
T Consensus       101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~---------~~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~  169 (254)
T 1ixz_A          101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQLLVEMDGFEKDTAIVVMAATNRPDI--LDP  169 (254)
T ss_dssp             HHHHTTSSSEEEEEETHHHHHC---------CHHHHHH---------HHHHHHHHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred             HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH---------HHHHHHHHhCCCCCCCEEEEEccCCchh--CCH
Confidence            44322 33455667777432211100     0111111         1222357899999999999999999987  788


Q ss_pred             CCC
Q 027067          165 PSV  167 (229)
Q Consensus       165 Pt~  167 (229)
                      +.-
T Consensus       170 ~l~  172 (254)
T 1ixz_A          170 ALL  172 (254)
T ss_dssp             GGG
T ss_pred             HHc
Confidence            764

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=99.29  E-value=4.6e-14  Score=117.89  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=50.5

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch-------hhh
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI-------FHQ   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~-------~~~   82 (229)
                      .|+++|++..++.       ++++.+ ++++|+|||||||||||++|+|++.|++|+|.++|.++.....       ...
T Consensus         9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~   80 (227)
T 1qhl_A            9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGK   80 (227)
T ss_dssp             EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGG
T ss_pred             EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhH
Confidence            4888888765542       566777 8999999999999999999999999999999999988732211       111


Q ss_pred             hhhcceEeecc
Q 027067           83 YKLQLNWLSLK   93 (229)
Q Consensus        83 ~~~~~~~~~~~   93 (229)
                      .+.+++|+++.
T Consensus        81 ~~~~i~~v~~~   91 (227)
T 1qhl_A           81 LKAGVCYSMLD   91 (227)
T ss_dssp             BCSSEEEEEEE
T ss_pred             hhcCcEEEEEe
Confidence            24567777753

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.28  E-value=6.3e-14  Score=132.16  Aligned_cols=160  Identities=13%  Similarity=0.110  Sum_probs=102.2

Q ss_pred             EEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEEcCEeCCCCchhhhhhhcceEeeccc-
Q 027067           17 SCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA-GEILWNGHDITQSGIFHQYKLQLNWLSLKD-   94 (229)
Q Consensus        17 ~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~-G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-   94 (229)
                      +..||...+++++++.+.+|+.++|+||||||||||+++|+|+.++.. |.+.+.+.+....      ...+.++++.. 
T Consensus        41 ~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~------~p~i~~~p~g~~  114 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN------MPRIKTVPACQG  114 (604)
T ss_dssp             HHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT------SCEEEEEETTHH
T ss_pred             ceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc------CCcEEEEecchH
Confidence            334678889999999999999999999999999999999999999887 8888877655422      12344443321 


Q ss_pred             ---------------------ccCCCCCHHHhHHHHHHhc-Cc---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHH
Q 027067           95 ---------------------AVKEKFTVLDNVQWFEVLE-GK---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQL  149 (229)
Q Consensus        95 ---------------------~~~~~~tv~e~l~~~~~~~-~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~l  149 (229)
                                           ..+..+++.+|+....... ..   ..........+|..+........+|+|++|++..
T Consensus       115 ~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~  194 (604)
T 3k1j_A          115 RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEP  194 (604)
T ss_dssp             HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEEC
T ss_pred             HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccC
Confidence                                 0111112222211000000 00   0001112233343222223346799999999999


Q ss_pred             HHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          150 ARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      ++....++.+|++||... |++..+..+.+.|++
T Consensus       195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            999999999999999888 899888888888875

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=99.28  E-value=1.6e-13  Score=126.84  Aligned_cols=161  Identities=17%  Similarity=0.164  Sum_probs=98.8

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~  105 (229)
                      .+++++.++..+.|.|++||||||++++|..  +.+++.|++.+.+.|..... +..+. .+      +.+..  +|.++
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e-l~~~~-~l------Phl~~--~Vvtd  228 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE-LSVYE-GI------PHLLT--EVVTD  228 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG-GGGGT-TC------TTBSS--SCBCS
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh-hhhhc-cC------Ccccc--eeecC
Confidence            5788899999999999999999999999876  56677788888777765321 11111 11      11100  11122


Q ss_pred             HHH----HHHh-cCccccHHHHHHHhCCChhhc---CCCCCCChhHHHHH----------HHHHHHhcCCC-eEEEeCCC
Q 027067          106 VQW----FEVL-EGKQGNSLPALELMGLGRLAK---EKARMLSMGQRKRL----------QLARLLAIDRP-IWLLDEPS  166 (229)
Q Consensus       106 l~~----~~~~-~~~~~~~~~~l~~~~l~~~~~---~~~~~LSgGqkqRv----------~lAral~~~p~-illlDEPt  166 (229)
                      ...    .... ...+. ..+++...|+.++..   +....+|+||+|+.          .+|+++...|. ++++||++
T Consensus       229 ~~~a~~~L~~~~~Emer-R~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~  307 (512)
T 2ius_A          229 MKDAANALRWCVNEMER-RYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFA  307 (512)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHH
Confidence            211    1100 11111 235677788765432   23346889988752          35666778898 89999999


Q ss_pred             CCCCHHH---HHHHHHHHHHHHhCCcEEEEEeCChh
Q 027067          167 VALDYDG---VRLLEYIIAEHRKKGGIVIVATHLPI  199 (229)
Q Consensus       167 ~~LD~~~---~~~l~~~l~~~~~~g~tii~vtH~~~  199 (229)
                      +-++...   .+.+..+.+.-++.|.++|++||++.
T Consensus       308 ~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          308 DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             HHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            9888432   12233333333445889999999987

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=99.27  E-value=4.6e-13  Score=108.31  Aligned_cols=72  Identities=11%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067           30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV  106 (229)
Q Consensus        30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l  106 (229)
                      |+++.+|++++|+||||||||||+++|+|+++    .+.+.+..+..... ......++|+++++..++.+++.+++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKR-PGDQEGVDYFFIDETRFQAMVKEGAF   72 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCC-TTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCc-hhHhcCceEEeccHHHHHHHHhcCcE
Confidence            57788999999999999999999999999964    57777776654321 12245678888877666655554443

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.24  E-value=2.1e-12  Score=104.10  Aligned_cols=64  Identities=20%  Similarity=0.188  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH----HhCCcEEEEEeCChhhHHhhhccCCCCC
Q 027067          147 LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH----RKKGGIVIVATHLPIQIEDAMNLRLPPR  212 (229)
Q Consensus       147 v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~----~~~g~tii~vtH~~~~~~~~~~~~~~~~  212 (229)
                      ...|++++.+|+++++|  ||++|..+.+.+.+.+.+.    ..+....-...|+...-.+-.+.+.||-
T Consensus       130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (199)
T 2f9l_A          130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPT  197 (199)
T ss_dssp             HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHHHHHHHTSCCC---------------------
T ss_pred             HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHHHHHHhhccCCchhhcccCCcccccccccCCC
Confidence            35589999999999999  9999998877666555442    1223333345677666666666665553

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.24  E-value=1.5e-11  Score=108.69  Aligned_cols=125  Identities=16%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-EcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL-WNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFE  110 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~  110 (229)
                      -+++|+++.|.||||||||||+..++.......|.+. ++... ...   ..+...+++..+            ++.   
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~-~~~---~~~a~~lG~~~~------------~l~---  117 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH-ALD---PEYAKKLGVDTD------------SLL---  117 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC-CCC---HHHHHHTTCCGG------------GCE---
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CcC---HHHHHHcCCCHH------------HeE---
Confidence            4789999999999999999998777755433334443 33221 100   001111111000            000   


Q ss_pred             HhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HH--
Q 027067          111 VLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAID--RPIWLLDEPSVAL----------DY---DG--  173 (229)
Q Consensus       111 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~--p~illlDEPt~~L----------D~---~~--  173 (229)
                                           .. .+  .+.  .|-+.++++++.+  |+++++|||++.+          |.   ..  
T Consensus       118 ---------------------i~-~~--~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r  171 (349)
T 2zr9_A          118 ---------------------VS-QP--DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQAR  171 (349)
T ss_dssp             ---------------------EE-CC--SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHH
T ss_pred             ---------------------Ee-cC--CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHH
Confidence                                 00 01  122  2344577777755  9999999999998          32   11  


Q ss_pred             --HHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          174 --VRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       174 --~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                        .+.+.++...+++.|.|||+++|....+
T Consensus       172 ~~~~~l~~L~~~a~~~~~tVI~inh~~~~~  201 (349)
T 2zr9_A          172 LMSQALRKMTGALNNSGTTAIFINELREKI  201 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEEEEECC---
T ss_pred             HHHHHHHHHHHHHHHhCCEEEEEecccccc
Confidence              2233333333456799999999976543

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.18  E-value=8e-12  Score=113.94  Aligned_cols=160  Identities=11%  Similarity=0.072  Sum_probs=94.7

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCEeCCCCchhhhh-hhcceEeecccccCCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGHDITQSGIFHQY-KLQLNWLSLKDAVKEKF  100 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  100 (229)
                      .+.|+++..-+.+|+++.|.|++|+|||||+..+++...+..| .|.|.+.+.+......+. ....++-.+. .....+
T Consensus       190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~~~~-l~~g~l  268 (454)
T 2r6a_A          190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQN-LRTGKL  268 (454)
T ss_dssp             CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCCHHH-HHTSCC
T ss_pred             cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCCHHH-HhcCCC
Confidence            4567778778999999999999999999999999987765445 565544333221111110 0011111000 000011


Q ss_pred             CHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHh--cCCCeEEEeCCCCCCCH-------
Q 027067          101 TVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLA--IDRPIWLLDEPSVALDY-------  171 (229)
Q Consensus       101 tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~--~~p~illlDEPt~~LD~-------  171 (229)
                      +..+           ..+..+++..++...+.-.....+|.++.+  +.++.++  .+|+++++|+++...+.       
T Consensus       269 ~~~~-----------~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~  335 (454)
T 2r6a_A          269 TPED-----------WGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENR  335 (454)
T ss_dssp             CHHH-----------HHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----C
T ss_pred             CHHH-----------HHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCH
Confidence            1111           112233444444333333345689999887  5566665  68999999999998743       


Q ss_pred             -HHHHHHHHHHHHHH-hCCcEEEEEeC
Q 027067          172 -DGVRLLEYIIAEHR-KKGGIVIVATH  196 (229)
Q Consensus       172 -~~~~~l~~~l~~~~-~~g~tii~vtH  196 (229)
                       .....+...|+.+. +.|.+||+++|
T Consensus       336 ~~~i~~i~~~Lk~lAke~~i~vi~~sq  362 (454)
T 2r6a_A          336 QQEVSEISRSLKALARELEVPVIALSQ  362 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence             22245555566654 45899999999

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.06  E-value=2.6e-10  Score=104.68  Aligned_cols=119  Identities=24%  Similarity=0.272  Sum_probs=78.7

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      ..++++++.+++|  +.|+||+|+|||||+|++++.....                       +.++.          ..
T Consensus        39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~-----------------------f~~is----------~~   83 (476)
T 2ce7_A           39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP-----------------------FFHIS----------GS   83 (476)
T ss_dssp             HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC-----------------------EEEEE----------GG
T ss_pred             HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC-----------------------eeeCC----------HH
Confidence            3455666777777  8899999999999999999832100                       00010          00


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC----------CCCCHHH
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS----------VALDYDG  173 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt----------~~LD~~~  173 (229)
                      +...                          ....  ++++++|..+++|....|.+|++||+.          ++.|...
T Consensus        84 ~~~~--------------------------~~~g--~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~  135 (476)
T 2ce7_A           84 DFVE--------------------------LFVG--VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDER  135 (476)
T ss_dssp             GTTT--------------------------CCTT--HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHH
T ss_pred             HHHH--------------------------HHhc--ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHH
Confidence            0000                          0000  267788999999999999999999994          4667776


Q ss_pred             HHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067          174 VRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       174 ~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~  205 (229)
                      .+.+..++..+.    ..+..||.+||+++.+..++
T Consensus       136 ~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~al  171 (476)
T 2ce7_A          136 EQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPAL  171 (476)
T ss_dssp             HHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGG
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhh
Confidence            667777777663    34678999999987766543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.05  E-value=7.6e-12  Score=105.85  Aligned_cols=52  Identities=27%  Similarity=0.316  Sum_probs=36.4

Q ss_pred             CcEEEEeE-EEEe-CCeeeeeeeeEEEeC---CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067            9 PRLLLKNV-SCMR-NAQQILRHVNISIHD---GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus         9 ~~l~l~~l-~~~~-~~~~iL~~vsl~i~~---Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++++++|+ +++| ++.++|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            57999999 9999 788899999999999   9999999999999999999999854

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=99.03  E-value=2.9e-11  Score=101.93  Aligned_cols=68  Identities=19%  Similarity=0.275  Sum_probs=50.6

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH---CCCCCCccEEE--------EcCEeCCCCchhhhhhhcceEee
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEIL--------WNGHDITQSGIFHQYKLQLNWLS   91 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I~--------~~g~~~~~~~~~~~~~~~~~~~~   91 (229)
                      ..++++.+   ++|++++|+|||||||||++++|+   |+..+++|.|+        .+|.++............+++++
T Consensus        17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~   93 (252)
T 4e22_A           17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF   93 (252)
T ss_dssp             ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred             hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence            34455543   789999999999999999999999   99999999999        88888754333344566777777


Q ss_pred             cc
Q 027067           92 LK   93 (229)
Q Consensus        92 ~~   93 (229)
                      +.
T Consensus        94 ~~   95 (252)
T 4e22_A           94 VS   95 (252)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.98  E-value=3.4e-10  Score=89.87  Aligned_cols=53  Identities=19%  Similarity=0.235  Sum_probs=42.2

Q ss_pred             EEEeEEEEeCCeeee--eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           12 LLKNVSCMRNAQQIL--RHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        12 ~l~~l~~~~~~~~iL--~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      .++.|...  +...+  +++++++.+| +++|+||||||||||+++|.+++.+..|..
T Consensus         3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~   57 (182)
T 3kta_A            3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKA   57 (182)
T ss_dssp             EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred             eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence            34444433  34456  7899999999 999999999999999999999988776643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.97  E-value=3.6e-11  Score=97.50  Aligned_cols=76  Identities=14%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHh
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDN  105 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~  105 (229)
                      ..+-.++-++|++++|+||||||||||+++|+|.+    |.+.+++.++....  .......++++|+....+.+++.++
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~   92 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE--NIATMQRGIPLTDEDRWPWLRSLAE   92 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH--HHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH--HHHHHhcCCCCCCcccccHHHHHHH
Confidence            33334667899999999999999999999999987    89999987764321  1122245666665544444455555


Q ss_pred             HH
Q 027067          106 VQ  107 (229)
Q Consensus       106 l~  107 (229)
                      +.
T Consensus        93 ~~   94 (200)
T 4eun_A           93 WM   94 (200)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.95  E-value=5e-10  Score=99.22  Aligned_cols=42  Identities=17%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE-EEcCEe
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI-LWNGHD   73 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I-~~~g~~   73 (229)
                      -+++|+++.|.||+|||||||+..+++...+..|.| ++++..
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            478999999999999999999999999877777766 555543

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.94  E-value=1.4e-11  Score=99.96  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=48.0

Q ss_pred             EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE--EEcCEeCC
Q 027067           14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI--LWNGHDIT   75 (229)
Q Consensus        14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I--~~~g~~~~   75 (229)
                      +|+++.++.....+.+++..++|++++|+|||||||||++++|++.+. ..|.+  +++|.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~   65 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR   65 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence            567777788888888888899999999999999999999999999987 67888  88876653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=98.90  E-value=5e-11  Score=115.41  Aligned_cols=74  Identities=20%  Similarity=0.114  Sum_probs=57.7

Q ss_pred             cCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCcEEEE-EeCChhhHHhhhc
Q 027067          133 KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV-ALDYDGVRLLEYIIAEHRKKGGIVIV-ATHLPIQIEDAMN  206 (229)
Q Consensus       133 ~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~g~tii~-vtH~~~~~~~~~~  206 (229)
                      +..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+...+........+|++ +||+.+.+.+.++
T Consensus       185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~  260 (773)
T 2xau_A          185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN  260 (773)
T ss_dssp             TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred             CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence            45567899999999999999999999999999997 89977655444444444444567777 4999888877664

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.85  E-value=5.1e-09  Score=92.38  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=77.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEG  114 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~  114 (229)
                      ..-.++|+|++|+|||||++.++|.. +.     ..+.+.....      ..++.+.....         .         
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~-~~-----~~~~~~~t~~------~~~~~~~~~~~---------~---------  215 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAK-PE-----IASYPFTTRG------INVGQFEDGYF---------R---------  215 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSC-CE-----EECCTTCSSC------EEEEEEEETTE---------E---------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-Cc-----cCCCCCeeec------eeEEEEEecCc---------e---------
Confidence            44589999999999999999999865 21     1121111110      11122111100         0         


Q ss_pred             ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 027067          115 KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLD-EPSVALDYDGVRLLEYIIAEHRKKGGIVIV  193 (229)
Q Consensus       115 ~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlD-EPt~~LD~~~~~~l~~~l~~~~~~g~tii~  193 (229)
                              +..++.....+..+..+|+|++|++. +.+...++-++++| +|.+++|......+...+..... +..+|+
T Consensus       216 --------~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piil  285 (357)
T 2e87_A          216 --------YQIIDTPGLLDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLV  285 (357)
T ss_dssp             --------EEEEECTTTSSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEE
T ss_pred             --------EEEEeCCCccccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEE
Confidence                    00011112334567789999998876 55556777889999 99999999877655555554432 677888


Q ss_pred             Ee--CChh
Q 027067          194 AT--HLPI  199 (229)
Q Consensus       194 vt--H~~~  199 (229)
                      +.  ||+.
T Consensus       286 V~NK~Dl~  293 (357)
T 2e87_A          286 VINKIDVA  293 (357)
T ss_dssp             EECCTTTC
T ss_pred             EEECcccC
Confidence            88  8864

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.83  E-value=1.3e-09  Score=96.85  Aligned_cols=131  Identities=20%  Similarity=0.206  Sum_probs=76.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC-----------CCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhH
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK-----------PSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNV  106 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~-----------p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l  106 (229)
                      +++|+|++|||||||++.|+|...           |+.|.|.++|.++.-.       ...|++.+.+.    ..+ +.+
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~-------DT~G~i~~lp~----~lv-e~f  248 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV-------DTVGFIRGIPP----QIV-DAF  248 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE-------ECCCBCSSCCG----GGH-HHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE-------eCCCchhcCCH----HHH-HHH
Confidence            499999999999999999999876           5678999888654210       01122111000    000 000


Q ss_pred             H-HHHHh----------c--Cc-------cccHHHHHHHhCCChhh----cCCCCCCChhHHHHHHHH----HHH-hcCC
Q 027067          107 Q-WFEVL----------E--GK-------QGNSLPALELMGLGRLA----KEKARMLSMGQRKRLQLA----RLL-AIDR  157 (229)
Q Consensus       107 ~-~~~~~----------~--~~-------~~~~~~~l~~~~l~~~~----~~~~~~LSgGqkqRv~lA----ral-~~~p  157 (229)
                      . .....          .  ..       .....+.++.+++.+..    ..++..+|+|++||+.++    +++ ..+|
T Consensus       249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~  328 (364)
T 2qtf_A          249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF  328 (364)
T ss_dssp             HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred             HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence            0 00000          0  00       01123456666654322    344667898998988877    555 4444


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEH  184 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~  184 (229)
                      ++    +|+|++|..+.+.+.+.+.+.
T Consensus       329 ~~----~~~SA~~g~gi~~L~~~I~~~  351 (364)
T 2qtf_A          329 DV----IPISALKRTNLELLRDKIYQL  351 (364)
T ss_dssp             EE----EECBTTTTBSHHHHHHHHHHH
T ss_pred             cE----EEEECCCCcCHHHHHHHHHHH
Confidence            54    899999999888888777664

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.81  E-value=4.7e-10  Score=98.03  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=59.0

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhh-----hhcceEe-eccccc
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQY-----KLQLNWL-SLKDAV   96 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~-----~~~~~~~-~~~~~~   96 (229)
                      +++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+......   ..+     +.++.++ ++....
T Consensus        95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~  174 (320)
T 1zu4_A           95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA  174 (320)
T ss_dssp             -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred             ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence            3689999999999999999999999999999999999999999988887543211   112     3456777 444333


Q ss_pred             CCCCCHHHhHH
Q 027067           97 KEKFTVLDNVQ  107 (229)
Q Consensus        97 ~~~~tv~e~l~  107 (229)
                      .+..++++++.
T Consensus       175 ~p~~~~~~~l~  185 (320)
T 1zu4_A          175 DPASVVFDAIK  185 (320)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            33334445543

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.81  E-value=2.2e-09  Score=86.50  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=30.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      +++.+|++++|+|||||||||++++|++++.|+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence            46889999999999999999999999999977666

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.77  E-value=1.2e-09  Score=104.02  Aligned_cols=134  Identities=13%  Similarity=-0.025  Sum_probs=80.9

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHH
Q 027067           30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQ  107 (229)
Q Consensus        30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~  107 (229)
                      |+++++|..++|+|+||+|||||++.|++...+  ..|+| .+|..+..... ....+.+.+.++...+... ++..|+ 
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~-~e~~~giti~~~~~~~~~~-~~~~nl-   78 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP-EAKLHRTTVRTGVAPLLFR-GHRVFL-   78 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH-HHHHTTSCCSCEEEEEEET-TEEEEE-
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH-HHHhcCCeEEecceEEeeC-CEEEEE-
Confidence            467789999999999999999999999976654  67888 66766554332 2223455555544333221 111111 


Q ss_pred             HHHHhcCccccHHHHHHHhCCChhhcCCCC-CCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 027067          108 WFEVLEGKQGNSLPALELMGLGRLAKEKAR-MLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK  186 (229)
Q Consensus       108 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~  186 (229)
                                              .|.+.+ .++     ......+-..+.-++++| |+.+++....+.+.    .+.+
T Consensus        79 ------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~----~~~~  124 (665)
T 2dy1_A           79 ------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAWT----VAER  124 (665)
T ss_dssp             ------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHHH----HHHH
T ss_pred             ------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHHH----HHHH
Confidence                                    111110 011     112223335688899999 99999988774433    3334


Q ss_pred             CCcEEEEEeCChhhH
Q 027067          187 KGGIVIVATHLPIQI  201 (229)
Q Consensus       187 ~g~tii~vtH~~~~~  201 (229)
                      .+..+|++.|.++..
T Consensus       125 ~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A          125 LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             TTCCEEEEEECGGGC
T ss_pred             ccCCEEEEecCCchh
Confidence            578888999987753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.72  E-value=1.9e-11  Score=112.90  Aligned_cols=138  Identities=14%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc
Q 027067           15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD   94 (229)
Q Consensus        15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~   94 (229)
                      ++...|.+..+++++++.+++|  +.|+||||+|||||+++|+|...  .+.|.+++.++..... ......+..+++..
T Consensus        45 ~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~-g~~~~~v~~lfq~a  119 (499)
T 2dhr_A           45 EIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFV-GVGAARVRDLFETA  119 (499)
T ss_dssp             HHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCT-THHHHHHHHHTTTS
T ss_pred             HHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhh-hhHHHHHHHHHHHH
Confidence            3333344556788899999998  99999999999999999999875  7889998877643211 11112233333332


Q ss_pred             c-cCCCCCHHHhHHHHHHhcC-----ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067           95 A-VKEKFTVLDNVQWFEVLEG-----KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus        95 ~-~~~~~tv~e~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                      . ..+...+.|++........     ......+.+         ++....||||++|+..+++|...+|++  +||+.-.
T Consensus       120 ~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l---------~~LL~~Ldg~~~~~~viviAatn~p~~--LD~aLlr  188 (499)
T 2dhr_A          120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPALLR  188 (499)
T ss_dssp             SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH---------HHHHHHGGGCCSSCCCEEEECCSCGGG--SCTTTSS
T ss_pred             HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH---------HHHHHHhcccccCccEEEEEecCChhh--cCccccc
Confidence            1 2233344455432111000     000111111         111235789999999999999999987  8988763

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.67  E-value=8.4e-10  Score=97.45  Aligned_cols=169  Identities=18%  Similarity=0.098  Sum_probs=82.7

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC--CCCCCccEEEEcCEeCCCCchhhhhhhcceEeeccc-ccCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG--FSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKD-AVKEK   99 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G--l~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   99 (229)
                      ..+|++++++++   .++|+|++|||||||++.|+|  ++++.+|.++.....+..... .......+...... ..+..
T Consensus        24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~-~~~~~~~~~~~~~~~~~~~~   99 (360)
T 3t34_A           24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKI-DDGTREYAEFLHLPRKKFTD   99 (360)
T ss_dssp             SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEEC-SSCSCCEEEETTSTTCCBSC
T ss_pred             ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecC-CCcccceeeeecCCCcccCC
Confidence            468999999998   899999999999999999999  567777766433322210000 00000011111110 00111


Q ss_pred             C-CHHHhHHHHH-HhcCc----cccH---------HHHHHHhCCChhhc-CCCCCCChhHHHHHHHHHHHhcCCCeEEEe
Q 027067          100 F-TVLDNVQWFE-VLEGK----QGNS---------LPALELMGLGRLAK-EKARMLSMGQRKRLQLARLLAIDRPIWLLD  163 (229)
Q Consensus       100 ~-tv~e~l~~~~-~~~~~----~~~~---------~~~l~~~~l~~~~~-~~~~~LSgGqkqRv~lAral~~~p~illlD  163 (229)
                      + .+.+.+.... ...+.    ....         ..-+..+++....+ ....+.++.++++..+++..+.+|+++|+.
T Consensus       100 ~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilv  179 (360)
T 3t34_A          100 FAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILA  179 (360)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEE
Confidence            0 1111111000 00000    0000         00000111111111 112346788999999999999999988887


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeC
Q 027067          164 EPSVALDYDGVRLLEYIIAEHRKKG-GIVIVATH  196 (229)
Q Consensus       164 EPt~~LD~~~~~~l~~~l~~~~~~g-~tii~vtH  196 (229)
                      -..+..|.... ....+++.+...| .+|+++|.
T Consensus       180 v~~~~~~~~~~-~~~~l~~~~~~~~~~~i~V~nK  212 (360)
T 3t34_A          180 ISPANQDLATS-DAIKISREVDPSGDRTFGVLTK  212 (360)
T ss_dssp             EEETTSCGGGC-HHHHHHHHSCTTCTTEEEEEEC
T ss_pred             eecccCCcCCH-HHHHHHHHhcccCCCEEEEEeC
Confidence            54444554433 3344556655555 57777776

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.66  E-value=5.8e-09  Score=83.10  Aligned_cols=35  Identities=26%  Similarity=0.195  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCC-CccEEEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKP-SAGEILW   69 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p-~~G~I~~   69 (229)
                      +|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~   39 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH   39 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence            6899999999999999999999998864 4566544

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.66  E-value=3.4e-08  Score=86.81  Aligned_cols=129  Identities=11%  Similarity=0.117  Sum_probs=80.2

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      +-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+.|.                    |++.      .++..
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl--------------------~fSl------Ems~~   87 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA--------------------VFSL------EMSAE   87 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE--------------------EEES------SSCHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE--------------------EEeC------CCCHH
Confidence            345555557899999999999999999999887754332222222                    2221      22333


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      +...-.          ......+.+..+.+   ..||.++.+|+..|...+.+++++|.|+|...++     .+...++.
T Consensus        88 ql~~Rl----------ls~~~~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~i~~~ir~  149 (338)
T 4a1f_A           88 QLALRA----------LSDLTSINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----QIRLQLRK  149 (338)
T ss_dssp             HHHHHH----------HHHHHCCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----HHHHHHHH
T ss_pred             HHHHHH----------HHHhhCCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----HHHHHHHH
Confidence            221110          00111111122222   4799999999999999999999999999975433     44444555


Q ss_pred             HHh-C-CcEEEEEeC
Q 027067          184 HRK-K-GGIVIVATH  196 (229)
Q Consensus       184 ~~~-~-g~tii~vtH  196 (229)
                      +++ . |..+|+|-|
T Consensus       150 l~~~~gg~~lIVIDy  164 (338)
T 4a1f_A          150 LKSQHKELGIAFIDY  164 (338)
T ss_dssp             HHHHCTTEEEEEEEE
T ss_pred             HHHhcCCCCEEEEec
Confidence            443 3 678888876

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.65  E-value=2.2e-07  Score=81.40  Aligned_cols=46  Identities=13%  Similarity=-0.039  Sum_probs=36.1

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEEeCChhhH
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK---KGGIVIVATHLPIQI  201 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~---~g~tii~vtH~~~~~  201 (229)
                      .+|.+|++||+... |......+..++..+..   .+.++|++||+++..
T Consensus       124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~  172 (389)
T 1fnn_A          124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL  172 (389)
T ss_dssp             TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred             CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence            45889999999876 88877787777766655   578899999998543

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.64  E-value=7.6e-09  Score=85.67  Aligned_cols=40  Identities=20%  Similarity=0.333  Sum_probs=35.6

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      .+.++|++++|.|+||||||||+++|+|+    .|+|.+.+++.
T Consensus        15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~   54 (230)
T 2vp4_A           15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV   54 (230)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence            35578999999999999999999999998    68899988764

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=1.1e-08  Score=82.55  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=24.8

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ...+++||||++.+|++++|+|++||||||+.+.|++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            456899999999999999999999999999999999765

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.63  E-value=3.2e-10  Score=99.18  Aligned_cols=55  Identities=22%  Similarity=0.229  Sum_probs=44.4

Q ss_pred             EEEeCCeeeeeeeeEEEeCCc------EEEEEcCCCccHHHHHHHHHCCCC--CCccEEEEcC
Q 027067           17 SCMRNAQQILRHVNISIHDGG------ALVLTGTNGSGKSTFLRMLAGFSK--PSAGEILWNG   71 (229)
Q Consensus        17 ~~~~~~~~iL~~vsl~i~~Ge------~~~iiG~NGsGKSTLl~~i~Gl~~--p~~G~I~~~g   71 (229)
                      ++.|+++..|++++..+.+++      ++||+||||||||||+++|++++.  |+.|.|.+-+
T Consensus        67 ~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~  129 (321)
T 3tqc_A           67 SFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT  129 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred             HHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence            344566778888888888777      999999999999999999999987  5667755533

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.62  E-value=3.4e-10  Score=105.50  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=46.4

Q ss_pred             EeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           14 KNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        14 ~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      +++.+.|+...++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|
T Consensus        87 ~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~  143 (543)
T 3m6a_A           87 EKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG  143 (543)
T ss_dssp             HHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence            33444455556778888888 8999999999999999999999999988888876655

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.58  E-value=6.9e-09  Score=84.12  Aligned_cols=42  Identities=19%  Similarity=0.087  Sum_probs=37.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      ..+|++++|+|+||||||||+++|++.+++..|.|.+.+.+.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~   60 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD   60 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence            578999999999999999999999999988889998876554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.55  E-value=1.9e-07  Score=84.59  Aligned_cols=40  Identities=30%  Similarity=0.267  Sum_probs=35.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      ++.+++++|+|||||||++..|++.+.+..++|.+-+.|+
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence            5789999999999999999999999988888888766554

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.54  E-value=2.4e-08  Score=81.42  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=27.0

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           30 NISIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      |+...+|++++|+||||||||||++.|++.++
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            44556899999999999999999999999875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.52  E-value=2.5e-08  Score=80.63  Aligned_cols=115  Identities=18%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHHHhHHHHHHhcCccc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQG  117 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~  117 (229)
                      +++|+|+|||||||+.++|+++     |...++..++         .+.+.        .+. +  +             
T Consensus         4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~---------~~~~~--------~~~-~--~-------------   45 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV---------AREVV--------AKD-S--P-------------   45 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH---------HHHTT--------CSS-C--H-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH---------HHHHc--------cCC-h--H-------------
Confidence            6899999999999999999993     5555543211         11100        000 0  0             


Q ss_pred             cHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          118 NSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       118 ~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      ...++.+.+|...       -.|.|+.+|..+++.+..+|+.+..+  .+.++|..++.+.+.+...  .+.++|+.+|.
T Consensus        46 ~~~~i~~~~g~~~-------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~  114 (206)
T 1jjv_A           46 LLSKIVEHFGAQI-------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPL  114 (206)
T ss_dssp             HHHHHHHHHCTTC-------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTT
T ss_pred             HHHHHHHHhCHHH-------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEech
Confidence            1122333344321       13677888888888777776543222  2233444444444433321  24577778887


Q ss_pred             hhhH
Q 027067          198 PIQI  201 (229)
Q Consensus       198 ~~~~  201 (229)
                      +.+.
T Consensus       115 l~e~  118 (206)
T 1jjv_A          115 LIEN  118 (206)
T ss_dssp             TTTT
T ss_pred             hhhc
Confidence            6543

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.51  E-value=2.2e-08  Score=78.77  Aligned_cols=38  Identities=32%  Similarity=0.386  Sum_probs=33.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      .+|++++|+|+|||||||++++|++.+    |.+.+++.++.
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~   43 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH   43 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence            468999999999999999999999875    88888876654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.48  E-value=2.3e-08  Score=93.33  Aligned_cols=43  Identities=30%  Similarity=0.406  Sum_probs=38.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEE-EcCEeC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EIL-WNGHDI   74 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~-~~g~~~   74 (229)
                      .+++|++++|+|+||||||||+++|+|.+.|++| +|. ++|.++
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            5779999999999999999999999999999887 785 887654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.48  E-value=6.6e-08  Score=78.72  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=27.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      ++|++++|+||||||||||++.|++.+++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            57999999999999999999999999886

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.48  E-value=7.1e-10  Score=97.47  Aligned_cols=65  Identities=22%  Similarity=0.158  Sum_probs=54.4

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      ++.+++.+.|+...+++++++.+.+|.+++|+|+||||||||++.|+|.+.+..|+|.+-+.+..
T Consensus        31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~   95 (341)
T 2p67_A           31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   95 (341)
T ss_dssp             HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence            45555566666677889999999999999999999999999999999998888888877666553

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=98.46  E-value=2e-07  Score=81.83  Aligned_cols=28  Identities=18%  Similarity=0.109  Sum_probs=25.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999988874

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.45  E-value=1.2e-08  Score=83.54  Aligned_cols=58  Identities=17%  Similarity=0.267  Sum_probs=41.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC---CCCccEEEE--------cCEeCCCCchhhhhhhcceEeecc
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS---KPSAGEILW--------NGHDITQSGIFHQYKLQLNWLSLK   93 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~---~p~~G~I~~--------~g~~~~~~~~~~~~~~~~~~~~~~   93 (229)
                      +.+++|+|++||||||+.++|++.+   .+++|++..        .|.++............+++.++.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS   73 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence            5689999999999999999999765   678898877        666554211122344556666654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.45  E-value=1.3e-06  Score=74.20  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=41.4

Q ss_pred             ChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH----------HHHHHHHHHHHHh----CCcEEEEEeCChhhHHhh
Q 027067          140 SMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDG----------VRLLEYIIAEHRK----KGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       140 SgGqkqRv~lAral~~~p~illlDEPt~~LD~~~----------~~~l~~~l~~~~~----~g~tii~vtH~~~~~~~~  204 (229)
                      +++++.|..++.+...+|.+|++||+.+-++...          ...+...+.....    .+..||.+|++++.+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~  175 (297)
T 3b9p_A           97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEA  175 (297)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHH
T ss_pred             hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHH
Confidence            3567778888888888999999999987765321          1223333333211    235688889987655543

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.44  E-value=1.7e-08  Score=89.97  Aligned_cols=134  Identities=13%  Similarity=0.063  Sum_probs=79.4

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccc-cCCCCC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDA-VKEKFT  101 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t  101 (229)
                      ..+++++++.+++|++++|+||||||||||+++|+|.   ..|.+..-+  .....    ....+++++|... +++..+
T Consensus       156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~~~----~~~~lg~~~q~~~~l~dd~~  226 (377)
T 1svm_A          156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPLDR----LNFELGVAIDQFLVVFEDVK  226 (377)
T ss_dssp             HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCTTT----HHHHHGGGTTCSCEEETTCC
T ss_pred             HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccchh----HHHHHHHhcchhHHHHHHHH
Confidence            3578999999999999999999999999999999985   467775511  11111    1112344444321 122222


Q ss_pred             HHHhHHHHHHhcC-c----cccHHHHHH---------------HhCC-ChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067          102 VLDNVQWFEVLEG-K----QGNSLPALE---------------LMGL-GRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus       102 v~e~l~~~~~~~~-~----~~~~~~~l~---------------~~~l-~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      ...++.  ..... .    .......+.               ..-+ ....+.....+++|++||+..+.+++..|+++
T Consensus       227 ~~~~~~--r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl  304 (377)
T 1svm_A          227 GTGGES--RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK  304 (377)
T ss_dssp             CSTTTT--TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred             HHHHHH--hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence            111100  00000 0    000111111               0001 11235567789999999999988888999998


Q ss_pred             E-EeCCCC
Q 027067          161 L-LDEPSV  167 (229)
Q Consensus       161 l-lDEPt~  167 (229)
                      + ||+|+.
T Consensus       305 iyLd~~~~  312 (377)
T 1svm_A          305 HCLERSEF  312 (377)
T ss_dssp             HHHHTCTH
T ss_pred             EEEeCCHH
Confidence            8 999987

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.43  E-value=3.6e-08  Score=85.08  Aligned_cols=59  Identities=10%  Similarity=-0.017  Sum_probs=41.0

Q ss_pred             CChhHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--EEEEEeCChhhHHhh
Q 027067          139 LSMGQRKRLQLARLLA--IDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKK-GG--IVIVATHLPIQIEDA  204 (229)
Q Consensus       139 LSgGqkqRv~lAral~--~~p~illlDEPt~~LD~~~-~~~l~~~l~~~~~~-g~--tii~vtH~~~~~~~~  204 (229)
                      +|.|++   .+++++.  ..|.++++    |.+|... +..+.+.+.++.+. +.  .+.+++|+-..+++.
T Consensus       101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l  165 (301)
T 1ega_A          101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTI  165 (301)
T ss_dssp             CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHH
T ss_pred             CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHH
Confidence            888886   5566666  67889998    8999876 66677777777653 43  566677765544444

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.41  E-value=4.6e-07  Score=82.14  Aligned_cols=44  Identities=14%  Similarity=0.132  Sum_probs=36.9

Q ss_pred             cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          155 IDRPIWLLDEPSVALDY-DGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~-~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      .+|++|++||+..-.+. ..++.+...+..+.+.|..||++||+.
T Consensus       193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~  237 (440)
T 2z4s_A          193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE  237 (440)
T ss_dssp             TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            48999999999887765 567788888888877888999999973

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.37  E-value=6.3e-07  Score=77.94  Aligned_cols=28  Identities=25%  Similarity=0.251  Sum_probs=25.3

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -+++|+++.|.||+|||||||+..++..
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            5789999999999999999999888764

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.37  E-value=6.2e-07  Score=77.76  Aligned_cols=132  Identities=13%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCCCCHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVL  103 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~  103 (229)
                      +.|+.+.--+.+|+++.|.|++|+|||||+..++....- .|                   ..+.|++.      .++..
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------------------~~vl~~sl------E~s~~  109 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------------------DVVNLHSL------EMGKK  109 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------------------CEEEEEES------SSCHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------------------CeEEEEEC------CCCHH
Confidence            346666656899999999999999999998877643211 11                   01222221      12333


Q ss_pred             HhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 027067          104 DNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE  183 (229)
Q Consensus       104 e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  183 (229)
                      +...-...          ....+.+..+.+.. ..||.++++|+..|...+.++++++.|+|...  .   ..+...++.
T Consensus       110 ~l~~R~~~----------~~~~i~~~~l~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~---~~i~~~i~~  173 (315)
T 3bh0_A          110 ENIKRLIV----------TAGSINAQKIKAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS--V---NYIWSKTRQ  173 (315)
T ss_dssp             HHHHHHHH----------HHTTCCHHHHHSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--H---HHHHHHHHH
T ss_pred             HHHHHHHH----------HHcCCCHHHHhcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--H---HHHHHHHHH
Confidence            32211100          00011111222111 23899999999999999999999999998643  2   234444455


Q ss_pred             HHh-CCcE--EEEEeCC
Q 027067          184 HRK-KGGI--VIVATHL  197 (229)
Q Consensus       184 ~~~-~g~t--ii~vtH~  197 (229)
                      +++ .+..  +|++-|-
T Consensus       174 l~~~~~~~~~lVVID~l  190 (315)
T 3bh0_A          174 TKRKNPGKRVIVMIDYL  190 (315)
T ss_dssp             HHHTSSSCCEEEEEECG
T ss_pred             HHHhcCCCCeEEEEeCc
Confidence            443 3666  8888773

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.35  E-value=3.8e-08  Score=85.82  Aligned_cols=30  Identities=13%  Similarity=0.345  Sum_probs=25.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPS   63 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~   63 (229)
                      ..+..+.|.||+|+|||||++.+++...+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            457899999999999999999999876543

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.32  E-value=3.9e-07  Score=70.63  Aligned_cols=31  Identities=29%  Similarity=0.521  Sum_probs=25.5

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++.++++.+| +.+|+|||||||||++.+|.-
T Consensus        15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            3455666654 999999999999999999873

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.29  E-value=2.2e-07  Score=72.66  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      .|++++|+|+|||||||++++|++.+.+    +++++
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~   35 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS   35 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence            4789999999999999999999998754    45553

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.26  E-value=6.3e-06  Score=67.96  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCcEEEEEeC
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK--KGGIVIVATH  196 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~--~g~tii~vtH  196 (229)
                      .+++++|+..+.+.++....+.+..+...+..  ...++|++||
T Consensus       111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK  154 (239)
T 3lxx_A          111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR  154 (239)
T ss_dssp             TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred             CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence            47899999999988888777676666654432  1358888998

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.21  E-value=5e-06  Score=69.26  Aligned_cols=34  Identities=26%  Similarity=0.561  Sum_probs=24.3

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++++++.+.+|  +.|+||+|+|||||+++|++...
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            44455555555  88999999999999999998754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.20  E-value=2.8e-07  Score=81.20  Aligned_cols=41  Identities=22%  Similarity=0.250  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDIT   75 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~   75 (229)
                      ++.+++|+|++|||||||++.|+|...++.|+|.+.+.+..
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~  113 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS  113 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence            47899999999999999999999998888888888766543

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.20  E-value=3.1e-07  Score=72.54  Aligned_cols=40  Identities=30%  Similarity=0.414  Sum_probs=32.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEeC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHDI   74 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~~   74 (229)
                      .+|++++|+|++||||||+.++|++.+++ .|  .|.+++..+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~   44 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI   44 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence            47999999999999999999999998765 56  666665443

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.19  E-value=8.4e-08  Score=86.77  Aligned_cols=58  Identities=24%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             eEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCC
Q 027067           15 NVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQ   76 (229)
Q Consensus        15 ~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~   76 (229)
                      ++++.|+...  ++++|+  +|++++++|+|||||||++..|++.+.+..|+|.+.+.|+..
T Consensus        81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            4445565543  678887  899999999999999999999999999999999998877754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.18  E-value=1.5e-06  Score=69.68  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ..+.|.||+|+|||||+++++....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999987654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.18  E-value=7e-07  Score=72.09  Aligned_cols=31  Identities=19%  Similarity=0.157  Sum_probs=28.2

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      -++++|++++|+|++||||||+++.|++.++
T Consensus        16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3678899999999999999999999999874

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.15  E-value=1.9e-06  Score=74.02  Aligned_cols=30  Identities=17%  Similarity=0.373  Sum_probs=26.8

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.+.++..+.|.||+|+|||||++++++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            346788999999999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.15  E-value=7.2e-07  Score=73.93  Aligned_cols=47  Identities=17%  Similarity=0.197  Sum_probs=33.3

Q ss_pred             eeeeeeeEEEe---CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           24 QILRHVNISIH---DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        24 ~iL~~vsl~i~---~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      .-|.++|+.+.   +|.+++|.|++||||||+++.|+..+.+ .+.+....
T Consensus        11 ~~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~   60 (229)
T 4eaq_A           11 VDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR   60 (229)
T ss_dssp             ---------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred             cCccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence            34778888887   8999999999999999999999999887 66775543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.10  E-value=1.1e-05  Score=71.35  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|+++.|.|++|+|||||...++..
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~   86 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAA   86 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999999777654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=98.07  E-value=2.4e-06  Score=69.46  Aligned_cols=30  Identities=30%  Similarity=0.575  Sum_probs=24.8

Q ss_pred             eeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           27 RHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        27 ~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      .+.++++.+ .+.+|+|||||||||++.+|.
T Consensus        15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence            345666766 499999999999999999885

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.05  E-value=1.1e-05  Score=69.54  Aligned_cols=43  Identities=14%  Similarity=-0.031  Sum_probs=31.8

Q ss_pred             cCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          155 IDRPIWLLDEPSVA-LDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       155 ~~p~illlDEPt~~-LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      .++++|++||+-.- -+...++.+...+..+.+.+..+|++|+.
T Consensus        97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~  140 (324)
T 1l8q_A           97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  140 (324)
T ss_dssp             HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            46999999998652 23366778888888877777777777764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=98.05  E-value=5.4e-07  Score=73.22  Aligned_cols=43  Identities=26%  Similarity=0.253  Sum_probs=36.8

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc--EEEEcCEe
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG--EILWNGHD   73 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G--~I~~~g~~   73 (229)
                      +.+.+|.+++|+|++||||||+.+.|++.+.|..|  .+.+++..
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~   64 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN   64 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence            34678999999999999999999999999887788  77776543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.05  E-value=4e-07  Score=81.33  Aligned_cols=51  Identities=16%  Similarity=0.286  Sum_probs=45.9

Q ss_pred             cEEEEeEEEEeCC-eeeee--------------eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           10 RLLLKNVSCMRNA-QQILR--------------HVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~--------------~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.++||++.|.. +..|+              |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus       133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence            4778899999964 66888              899999999999999999999999999999875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.04  E-value=2.6e-07  Score=81.77  Aligned_cols=54  Identities=17%  Similarity=0.192  Sum_probs=38.7

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL   68 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~   68 (229)
                      ..+.+.|++..|+++.++++++|+|      +|+|++|+|||||++.|.|...+..|.+.
T Consensus        16 ~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~   69 (361)
T 2qag_A           16 GYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP   69 (361)
T ss_dssp             -----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred             ceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence            3588889988888888999999987      99999999999999999988666555443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.04  E-value=2.6e-06  Score=69.21  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+..+.|.||+|+|||||++.++....
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999987543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.02  E-value=8.6e-06  Score=73.74  Aligned_cols=38  Identities=16%  Similarity=0.220  Sum_probs=30.4

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +-|+.+.--+.+|+++.|.|++|+|||||+.-++....
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a  225 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA  225 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34555554589999999999999999999987776543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.99  E-value=5.5e-06  Score=64.77  Aligned_cols=27  Identities=37%  Similarity=0.588  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|..++|+|++|+|||||++.++|..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999999975

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.98  E-value=5.7e-06  Score=74.76  Aligned_cols=37  Identities=22%  Similarity=0.464  Sum_probs=32.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC------------CCccEEEEcCEeC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK------------PSAGEILWNGHDI   74 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~------------p~~G~I~~~g~~~   74 (229)
                      .++|+|+||||||||++.|+|...            +.+|.+.++|+++
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~  230 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY  230 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence            799999999999999999999864            6679999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.98  E-value=4.7e-06  Score=66.14  Aligned_cols=48  Identities=25%  Similarity=0.438  Sum_probs=27.3

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC----C----CCCccEEEEcCE
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF----S----KPSAGEILWNGH   72 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl----~----~p~~G~I~~~g~   72 (229)
                      .+++++++..++. .++++|++|+|||||++.+.+-    .    .++.+.+.++|.
T Consensus        12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~   67 (190)
T 1m2o_B           12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI   67 (190)
T ss_dssp             ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred             HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence            4788999998887 6799999999999999999972    2    223456666664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.97  E-value=5.3e-07  Score=77.77  Aligned_cols=60  Identities=23%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             eEEEEeCCeeeeee-eeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCC
Q 027067           15 NVSCMRNAQQILRH-VNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS   77 (229)
Q Consensus        15 ~l~~~~~~~~iL~~-vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~   77 (229)
                      ++.+.|++..  ++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+....
T Consensus        79 ~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~  139 (297)
T 1j8m_F           79 ELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP  139 (297)
T ss_dssp             HHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             HHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence            3444555443  56 788876 999999999999999999999999988888999988776543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.95  E-value=1.2e-06  Score=70.20  Aligned_cols=55  Identities=25%  Similarity=0.451  Sum_probs=38.8

Q ss_pred             EEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC--------CCCCccEEEEcCEe
Q 027067           18 CMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF--------SKPSAGEILWNGHD   73 (229)
Q Consensus        18 ~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl--------~~p~~G~I~~~g~~   73 (229)
                      +.|++ ..+++++|+..++++ ++|+|++|+|||||++.+.+-        ..++.+.+.++|..
T Consensus         7 ~~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~   70 (198)
T 1f6b_A            7 WIYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT   70 (198)
T ss_dssp             ------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred             HHHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence            34544 468899999888874 789999999999999999873        23345667666643

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.93  E-value=1.4e-05  Score=70.60  Aligned_cols=43  Identities=26%  Similarity=0.440  Sum_probs=33.0

Q ss_pred             EEEEeEEEE-eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           11 LLLKNVSCM-RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        11 l~l~~l~~~-~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ..++.|+.. |.   .+++..+++.+ .+.+|+|||||||||+|.+|.
T Consensus         3 M~l~~L~l~nFr---~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A            3 MILKEIRMNNFK---SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             EEEEEEEEEEET---TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEeEEEEEccc---cccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence            456666543 43   34677888877 499999999999999999986

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.92  E-value=1.1e-05  Score=68.64  Aligned_cols=31  Identities=23%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      ..+.|+||+|+||||+.++|++...+..|.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~   78 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM   78 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence            5899999999999999999999887666644

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.92  E-value=1.1e-07  Score=82.51  Aligned_cols=44  Identities=16%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ++.++++|| ...++......+.+.+.+... ...+|++|+++..+
T Consensus       133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l  176 (353)
T 1sxj_D          133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRI  176 (353)
T ss_dssp             SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGS
T ss_pred             CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhC
Confidence            667999999 788998888888888876533 45577788776543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.91  E-value=1.9e-05  Score=66.53  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=24.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.++.-+.|.||+|+|||||+++++...
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3567789999999999999999998764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.90  E-value=2.2e-07  Score=80.91  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=46.1

Q ss_pred             eEEEEeCCeeeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           15 NVSCMRNAQQILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        15 ~l~~~~~~~~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      +++..+|...+++.++..++.|++  +.+.||+|+||||+++++++.+.+..+.+.+.+
T Consensus        23 ~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~   81 (340)
T 1sxj_C           23 TLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLE   81 (340)
T ss_dssp             SGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEE
T ss_pred             cHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEE
Confidence            334446777889999999999999  999999999999999999998776665544433

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.89  E-value=3.1e-06  Score=67.12  Aligned_cols=37  Identities=32%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL   68 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~   68 (229)
                      ...+|.+++|+|++||||||+.+.|++.+.+..+.+.
T Consensus         9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~   45 (186)
T 2yvu_A            9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE   45 (186)
T ss_dssp             CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence            3457999999999999999999999998877666663

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.86  E-value=6.5e-06  Score=65.36  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=26.5

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|++..+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888899999999999999999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.85  E-value=1.9e-05  Score=61.04  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|+|++|+|||||++.++|...
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~~~   28 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGENV   28 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCe
Confidence            589999999999999999999754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.84  E-value=6.4e-06  Score=66.03  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      +++|+|+|||||||+.+.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.82  E-value=1.2e-05  Score=63.05  Aligned_cols=22  Identities=36%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.++|.
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.82  E-value=9.7e-06  Score=72.59  Aligned_cols=41  Identities=20%  Similarity=0.282  Sum_probs=33.8

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCC-----------CCCCccEEEEcCE
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGF-----------SKPSAGEILWNGH   72 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~   72 (229)
                      .+..|..++|+|+||+|||||+++|+|.           +.|..|.|.+.+.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~   69 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE   69 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence            4567889999999999999999999998           6778888887653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.80  E-value=9.6e-06  Score=65.37  Aligned_cols=30  Identities=23%  Similarity=0.332  Sum_probs=26.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ...+|.+++|+||+|||||||.+.|+..++
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            356899999999999999999999988764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.72  E-value=4.7e-06  Score=67.09  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=32.4

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .+|.++++||.-. +|......+...+... ..+..+|++|++...+..
T Consensus       125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~~~~  171 (250)
T 1njg_A          125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPV  171 (250)
T ss_dssp             SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCH
T ss_pred             CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHhCCH
Confidence            4678999999755 7777766666665432 235678899988665443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.69  E-value=0.00018  Score=63.01  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+..-+.|.||.|+|||||+++++...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            346689999999999999999998754

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.65  E-value=0.00022  Score=63.09  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=23.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      -+++|+++.|.|+.|+|||||...++-
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence            368999999999999999999876654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.64  E-value=1.5e-05  Score=63.42  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEEcCEe
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPS---AGEILWNGHD   73 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~   73 (229)
                      -.+++|+|++|||||||++.|.+.+++.   -|.|..++.+
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            3589999999999999999999875433   4777776543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.64  E-value=2.7e-05  Score=61.19  Aligned_cols=25  Identities=40%  Similarity=0.646  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      .++|+|++|+|||||++.++|...+
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~~~   28 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTKKS   28 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC---
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCc
Confidence            4799999999999999999997544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=97.64  E-value=0.00029  Score=58.11  Aligned_cols=28  Identities=21%  Similarity=0.283  Sum_probs=23.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +....-+.|.||.|+|||||.+.++...
T Consensus        36 ~~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           36 AKVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3455668899999999999999998743

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.62  E-value=3.5e-05  Score=66.96  Aligned_cols=28  Identities=21%  Similarity=0.356  Sum_probs=24.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ..+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.62  E-value=2.7e-05  Score=61.27  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .+|.+++|+|++||||||+.+.|+.
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999984

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.61  E-value=2.2e-05  Score=62.94  Aligned_cols=35  Identities=31%  Similarity=0.504  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      ..+++|+|++||||||+.+.|++.+    |.+.+++.++
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~   52 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL   52 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence            4689999999999999999998765    4455654433

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.57  E-value=0.00013  Score=62.80  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=24.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      -+++|+++.|.|++|+|||||+..++.
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999999987774

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.57  E-value=3.4e-05  Score=63.58  Aligned_cols=27  Identities=26%  Similarity=0.362  Sum_probs=23.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .-.+|.+++|+|++||||||+.+.|++
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999999999986

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.57  E-value=5.4e-06  Score=73.19  Aligned_cols=37  Identities=32%  Similarity=0.486  Sum_probs=32.9

Q ss_pred             eeeeeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCC
Q 027067           24 QILRHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+++.+++.+++|++  ++|+|++||||||+.++|++.+
T Consensus        10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l   48 (359)
T 2ga8_A           10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII   48 (359)
T ss_dssp             HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence            467778888899998  9999999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.50  E-value=1.8e-05  Score=65.86  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=25.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHH---CCCCCCccEE
Q 027067           36 GGALVLTGTNGSGKSTFLRMLA---GFSKPSAGEI   67 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~---Gl~~p~~G~I   67 (229)
                      .-+++|.||+||||||+.+.|+   |+...+.|.+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            4589999999999999999999   5544555554

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.50  E-value=3.1e-05  Score=64.61  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      ...++.++.|+|++||||||+.+.|+..+.  .+.+.+++..+
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~   68 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF   68 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence            567789999999999999999999998764  35577766443

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.48  E-value=6.1e-05  Score=58.11  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.45  E-value=7.5e-05  Score=58.22  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .|.++.|+|++||||||+.+.|+..+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            367899999999999999999998654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.40  E-value=9.2e-05  Score=58.09  Aligned_cols=26  Identities=23%  Similarity=0.307  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|.+++|.|++||||||+.+.|+-.+
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999998643

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.39  E-value=0.00068  Score=51.44  Aligned_cols=28  Identities=32%  Similarity=0.417  Sum_probs=23.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ..+.-+.|.||.|+|||++.+.|.....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~   49 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFGR   49 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence            3456689999999999999999987644

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.36  E-value=4.4e-05  Score=67.65  Aligned_cols=48  Identities=23%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALD---YDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD---~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      .|.++++||-=.-++   +...+.+.++++..++.|..++++||+++++..
T Consensus       262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~  312 (392)
T 4ag6_A          262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLA  312 (392)
T ss_dssp             TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGS
T ss_pred             ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhC
Confidence            588999999988885   667788999999999999999999999988753

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.34  E-value=0.0004  Score=60.54  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=24.9

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      --+.+|.++.|.||.|+|||||...++.
T Consensus       118 GGi~~gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          118 GHRYASGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3578889999999999999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.33  E-value=0.0001  Score=58.56  Aligned_cols=31  Identities=32%  Similarity=0.369  Sum_probs=25.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      ..+++|+|++||||||+.+.|+..     |-..++.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~   38 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL   38 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence            458999999999999999999985     6556653

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.33  E-value=0.00012  Score=59.15  Aligned_cols=24  Identities=42%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .+-+++|+|++||||||+.+.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999997

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.32  E-value=0.00012  Score=56.26  Aligned_cols=19  Identities=47%  Similarity=0.896  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHH
Q 027067           38 ALVLTGTNGSGKSTFLRML   56 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i   56 (229)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.32  E-value=0.00016  Score=63.89  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHC-----------CCCCCccEEEEcC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAG-----------FSKPSAGEILWNG   71 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~G-----------l~~p~~G~I~~~g   71 (229)
                      |-.++|+|.+|+|||||++.|+|           -+.|+.|.+.+.+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~   48 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence            35689999999999999999998           3457778888765

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.32  E-value=0.00011  Score=57.96  Aligned_cols=26  Identities=27%  Similarity=0.400  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999999753

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.32  E-value=0.0016  Score=56.20  Aligned_cols=27  Identities=26%  Similarity=0.347  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+..-+.|.||.|+|||||.+.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455778999999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.31  E-value=0.0001  Score=61.69  Aligned_cols=24  Identities=21%  Similarity=0.178  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+++|+||+|||||||.+.|++..
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.30  E-value=0.00028  Score=55.45  Aligned_cols=36  Identities=31%  Similarity=0.543  Sum_probs=26.4

Q ss_pred             EEEEEcCCCccHHHHHHHHH-CC----CCCCcc----EEEEcCEe
Q 027067           38 ALVLTGTNGSGKSTFLRMLA-GF----SKPSAG----EILWNGHD   73 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~-Gl----~~p~~G----~I~~~g~~   73 (229)
                      .++|+|++|+|||||++.+. +.    ..|+.|    .+.++|..
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~   66 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS   66 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence            58999999999999996554 44    456666    56666644

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.28  E-value=2.9e-05  Score=62.33  Aligned_cols=26  Identities=27%  Similarity=0.597  Sum_probs=22.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPS   63 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~   63 (229)
                      +++|.|++||||||+++.|+..+.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~   27 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAA   27 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            68999999999999999999876543

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=0.00014  Score=57.56  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|+|++||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999843

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.27  E-value=0.0014  Score=59.94  Aligned_cols=27  Identities=30%  Similarity=0.362  Sum_probs=23.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      -+.+|+++.|.|++|+|||||+.-++-
T Consensus       238 Gl~~G~l~li~G~pG~GKT~lal~~a~  264 (503)
T 1q57_A          238 GARGGEVIMVTSGSGMVMSTFVRQQAL  264 (503)
T ss_dssp             CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence            488999999999999999999765553

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.27  E-value=0.00087  Score=58.33  Aligned_cols=27  Identities=33%  Similarity=0.549  Sum_probs=21.8

Q ss_pred             EeCCcEEEEEcCCCccHHHHH-HHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFL-RMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl-~~i~Gl~   60 (229)
                      +.+| ++-|.||.|||||||+ .+++...
T Consensus        26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~   53 (333)
T 3io5_A           26 MQSG-LLILAGPSKSFKSNFGLTMVSSYM   53 (333)
T ss_dssp             BCSE-EEEEEESSSSSHHHHHHHHHHHHH
T ss_pred             CcCC-eEEEECCCCCCHHHHHHHHHHHHH
Confidence            6788 9999999999999994 5555443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.26  E-value=0.00013  Score=57.01  Aligned_cols=23  Identities=48%  Similarity=0.527  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998654

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.25  E-value=0.00018  Score=57.15  Aligned_cols=26  Identities=27%  Similarity=0.320  Sum_probs=24.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|.+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.24  E-value=0.00018  Score=56.45  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            4 NLTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999997543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.24  E-value=0.00015  Score=56.76  Aligned_cols=25  Identities=40%  Similarity=0.430  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++.++.|+|++||||||+.+.|+-
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            4678899999999999999999983

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.24  E-value=0.00015  Score=58.14  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|+||||||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999886543

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.21  E-value=0.00019  Score=55.64  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999986

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.21  E-value=0.0027  Score=57.53  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      ++.+++++|++|+||||++..|+..+....-+|.+
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll  133 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV  133 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence            46899999999999999999998776544334444

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.20  E-value=0.00021  Score=56.88  Aligned_cols=27  Identities=30%  Similarity=0.537  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +|.+++|.|+.||||||+.+.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            577899999999999999999987554

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.18  E-value=0.00021  Score=57.10  Aligned_cols=26  Identities=35%  Similarity=0.575  Sum_probs=23.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+|.+++|+|+.||||||+.+.|+..
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            46889999999999999999999853

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.18  E-value=0.00021  Score=55.90  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      =.++|+|++|+|||||++.+.+-.
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~~   40 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASED   40 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999863

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.17  E-value=0.00019  Score=60.25  Aligned_cols=41  Identities=24%  Similarity=0.217  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhh
Q 027067          165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~  205 (229)
                      |||+.+..+...+.+.+..... ...+..+.+|..+.++.++
T Consensus       144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~  185 (271)
T 3k53_A          144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREI  185 (271)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHH
Confidence            9999999987777776666543 3445567788887777765

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.16  E-value=0.00023  Score=56.10  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++.+++|+|+.||||||+.+.|+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999999854

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.16  E-value=0.00019  Score=61.28  Aligned_cols=37  Identities=22%  Similarity=0.371  Sum_probs=29.0

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      -..|.++.|.||+||||||+.+.|+.-++  .|.+.++.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~   66 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN   66 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence            34578999999999999999999986543  35566654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.14  E-value=0.00025  Score=55.58  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++.+++|+|+.||||||+.+.|+..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568999999999999999998753

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.14  E-value=0.0013  Score=68.38  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=28.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      +++|+++.|.||+|+|||||+..++.......|.+
T Consensus       729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V  763 (1706)
T 3cmw_A          729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC  763 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence            89999999999999999999998877654333444

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.13  E-value=0.00025  Score=56.75  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+|.+++|+|+.||||||+.+.|+-.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999999853

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.08  E-value=0.00068  Score=51.37  Aligned_cols=41  Identities=10%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      +..+|++||. ..++...+..+.+.+.+....+..+|.+|+.
T Consensus        75 ~~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~  115 (143)
T 3co5_A           75 EGGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCSY  115 (143)
T ss_dssp             TTSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CCCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4578999996 4678877778888877654345667777763

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.07  E-value=0.00029  Score=55.17  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|.|+.||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.06  E-value=0.00044  Score=59.96  Aligned_cols=47  Identities=26%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC----CCCCCccEEEE
Q 027067           22 AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG----FSKPSAGEILW   69 (229)
Q Consensus        22 ~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G----l~~p~~G~I~~   69 (229)
                      ....+++..+.+ .|.-++|+|+||+|||||...+.+    ++..+...|..
T Consensus       131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~  181 (314)
T 1ko7_A          131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE  181 (314)
T ss_dssp             EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred             cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence            456788888888 789999999999999999998887    34334444444

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.06  E-value=0.00032  Score=55.82  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999998754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.05  E-value=0.00022  Score=58.63  Aligned_cols=25  Identities=24%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      +.+|+.+++.||+||||||++.++.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            4579999999999999999887664

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.04  E-value=0.00024  Score=55.49  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=18.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56799999999999999999998543

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.03  E-value=0.0033  Score=55.47  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.-+.|.||.|+|||+|.++++...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            45789999999999999999998653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.02  E-value=0.00038  Score=55.00  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+++|+|++|||||||+..|++.++
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999988754

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.00  E-value=0.001  Score=57.55  Aligned_cols=44  Identities=20%  Similarity=0.224  Sum_probs=30.1

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      ++.++++||. -.|+......+.+.+.+. ..+..+|++|++...+
T Consensus       119 ~~~vliiDe~-~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l  162 (373)
T 1jr3_A          119 RFKVYLIDEV-HMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQKL  162 (373)
T ss_dssp             SSEEEEEECG-GGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGGGS
T ss_pred             CeEEEEEECc-chhcHHHHHHHHHHHhcC-CCceEEEEEeCChHhC
Confidence            5789999995 457777666666666442 2356788888876543

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.98  E-value=0.00042  Score=54.70  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=23.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ..+.+++|+|+.||||||+.+.|+..+
T Consensus        10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           10 RKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            457799999999999999999997643

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.96  E-value=0.0027  Score=57.41  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             eeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           26 LRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        26 L~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      |+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~  219 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK  219 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence            333333588999999999999999999866554

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.96  E-value=0.00038  Score=54.48  Aligned_cols=25  Identities=28%  Similarity=0.530  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      =.++|+|+.|||||||++.+++-..
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~~~   73 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTDSV   73 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3789999999999999999998653

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.94  E-value=0.00053  Score=55.51  Aligned_cols=26  Identities=31%  Similarity=0.308  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999997643

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.93  E-value=0.00048  Score=56.07  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++.+++|+|+.||||||+.+.|+..
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999854

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.92  E-value=0.0005  Score=58.21  Aligned_cols=23  Identities=26%  Similarity=0.664  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|++|||||||++.++|..
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.91  E-value=0.0082  Score=53.69  Aligned_cols=56  Identities=18%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             HHHHhcCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067          150 ARLLAIDRPIWLLDEPSVAL----------DYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       150 Aral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~  205 (229)
                      ..|-...|.|+++||--+-.          |......+..+|..+.    ..+..||.+|+.++.+..++
T Consensus       235 ~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAl  304 (405)
T 4b4t_J          235 VMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPAL  304 (405)
T ss_dssp             HHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHH
T ss_pred             HHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhH
Confidence            34445679999999965432          2334456667776653    22457899999998888876

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.00054  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.90  E-value=0.00054  Score=52.37  Aligned_cols=23  Identities=35%  Similarity=0.619  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.|-.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            47999999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.89  E-value=0.00054  Score=55.08  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.89  E-value=0.00056  Score=51.97  Aligned_cols=22  Identities=23%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999984

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.88  E-value=0.00043  Score=52.55  Aligned_cols=24  Identities=33%  Similarity=0.671  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|+|+.|+|||||++.+.|...
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~~   27 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVED   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC--
T ss_pred             EEEEECCCCCCHHHHHHHHcCccc
Confidence            478999999999999999988643

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.88  E-value=0.00062  Score=52.57  Aligned_cols=24  Identities=42%  Similarity=0.391  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      =++++|+|+.||||||+.+.|+..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999753

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.87  E-value=0.00066  Score=54.04  Aligned_cols=25  Identities=32%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+-+++|+|+.||||||+.+.|+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.87  E-value=0.00096  Score=54.23  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=30.9

Q ss_pred             CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           21 NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        21 ~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .....++..-+.+ .|..+.|+||+|||||||...|+.-.
T Consensus        20 a~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           20 AERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             -CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CcceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3455677777776 57899999999999999999987643

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.87  E-value=0.00049  Score=53.14  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.87  E-value=0.00046  Score=52.32  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.86  E-value=0.00064  Score=52.28  Aligned_cols=22  Identities=36%  Similarity=0.320  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|+|+.||||||+.+.|+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999763

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.85  E-value=0.00061  Score=54.23  Aligned_cols=25  Identities=24%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +..+++|+|+.||||||+.+.|+..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999854

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.85  E-value=0.00061  Score=51.87  Aligned_cols=23  Identities=35%  Similarity=0.652  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            37899999999999999998754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.85  E-value=0.0006  Score=53.30  Aligned_cols=24  Identities=25%  Similarity=0.250  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ..+++|+|+.||||||+.+.|+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999999753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.84  E-value=0.00055  Score=52.57  Aligned_cols=23  Identities=35%  Similarity=0.569  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998753

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.84  E-value=0.0014  Score=59.98  Aligned_cols=28  Identities=25%  Similarity=0.447  Sum_probs=23.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.+..-+.|.||+|+|||+|.++|+...
T Consensus       235 ~~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          235 VKPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            3455679999999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.83  E-value=0.00052  Score=55.61  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+.++.|+|+.||||||+.+.|+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999999754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.83  E-value=0.00048  Score=51.83  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            47999999999999999998653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.82  E-value=0.00059  Score=51.41  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++++|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.82  E-value=0.00083  Score=51.55  Aligned_cols=25  Identities=20%  Similarity=0.287  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~   31 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHS   31 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3457899999999999999999874

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.82  E-value=0.00066  Score=54.61  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.||||||+.+.|+.-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.81  E-value=0.00057  Score=51.57  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.81  E-value=0.00056  Score=53.55  Aligned_cols=23  Identities=52%  Similarity=0.501  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+++|+|+.||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.80  E-value=0.00056  Score=51.66  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.80  E-value=0.00063  Score=53.22  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 1svi_A           24 PEIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999863

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.80  E-value=0.00058  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.79  E-value=0.00065  Score=52.88  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCc
Confidence            68999999999999999999874

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.79  E-value=0.00077  Score=56.32  Aligned_cols=25  Identities=48%  Similarity=0.589  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++.++.|+|++||||||+.+.|+..
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.78  E-value=0.0006  Score=51.85  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4799999999999999999865

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.77  E-value=0.00061  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++++|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.77  E-value=0.00062  Score=52.28  Aligned_cols=23  Identities=17%  Similarity=0.460  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.+.+-.
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999888754

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.76  E-value=0.00075  Score=55.97  Aligned_cols=24  Identities=21%  Similarity=0.238  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -+++|.|+.||||||+.+.|+..+
T Consensus        23 ~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           23 FLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh
Confidence            479999999999999999997743

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.76  E-value=0.00066  Score=52.69  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            37899999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.76  E-value=0.00064  Score=51.47  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.75  E-value=0.00058  Score=51.85  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.75  E-value=0.00065  Score=52.10  Aligned_cols=23  Identities=26%  Similarity=0.475  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998653

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.011  Score=53.88  Aligned_cols=60  Identities=20%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             HHHHHHHHhcCCCeEEEeCCCCCC----------CHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067          146 RLQLARLLAIDRPIWLLDEPSVAL----------DYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       146 Rv~lAral~~~p~illlDEPt~~L----------D~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~  205 (229)
                      |-.+..|-...|-|+++||--+-.          +......+..+|.++.    ..+..||.+|+.++.+..++
T Consensus       292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpAL  365 (467)
T 4b4t_H          292 RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPAL  365 (467)
T ss_dssp             HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHH
T ss_pred             HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhh
Confidence            334455556779999999986543          2233445666666653    22457888999998888876

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.74  E-value=0.00084  Score=53.92  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .-+++|+|+.||||||+.+.++..
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.74  E-value=0.0089  Score=62.14  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.7

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|.++.|.||.|+|||||..-++..
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLq~a~~  406 (1706)
T 3cmw_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAA  406 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998666543

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.73  E-value=0.00049  Score=53.24  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .=.++|+|++|+|||||++.+.+
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999999874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.73  E-value=0.00064  Score=52.18  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.012  Score=52.93  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=36.5

Q ss_pred             HHHhcCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHH----hCCcEEEEEeCChhhHHhhh
Q 027067          151 RLLAIDRPIWLLDEPS----------VALDYDGVRLLEYIIAEHR----KKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       151 ral~~~p~illlDEPt----------~~LD~~~~~~l~~~l~~~~----~~g~tii~vtH~~~~~~~~~  205 (229)
                      .|-...|-|+++||--          ++-|......+..+|..+.    ..+..||.+|+.++.+..++
T Consensus       260 ~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~Al  328 (428)
T 4b4t_K          260 LARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPAL  328 (428)
T ss_dssp             HHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHH
T ss_pred             HHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhh
Confidence            3444568899999852          2334444556666666653    23567999999998888776

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.69  E-value=0.00039  Score=59.42  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=19.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++-+++|.|++||||||+.+.|+..+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998643

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.67  E-value=0.00079  Score=52.48  Aligned_cols=23  Identities=30%  Similarity=0.351  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999999863

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.67  E-value=0.00079  Score=52.10  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999998653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.67  E-value=0.00094  Score=51.23  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            47999999999999999998753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.67  E-value=0.0008  Score=50.97  Aligned_cols=22  Identities=32%  Similarity=0.392  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999863

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.67  E-value=0.00098  Score=57.16  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|.+|+|||||++.+.|-.
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999863

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.67  E-value=0.001  Score=54.20  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|.|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999999753

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.66  E-value=0.0011  Score=54.97  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++-+++|+|+.||||||+.+.|+-
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.66  E-value=0.0008  Score=52.70  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4799999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.65  E-value=0.00093  Score=56.65  Aligned_cols=23  Identities=43%  Similarity=0.447  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .-+++|+|+.||||||+.+.|+.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999999983

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.65  E-value=0.00082  Score=52.09  Aligned_cols=22  Identities=23%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999864

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.64  E-value=0.00094  Score=50.80  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            9 RILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999763

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.63  E-value=0.00093  Score=52.02  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      .++|+|+.|+|||||++.+.|....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~~   40 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVPE   40 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred             EEEEECCCCCCHHHHHHHHHhhccc
Confidence            4789999999999999999987543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.63  E-value=0.00083  Score=56.47  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|++|+|||||++.|.|-.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.62  E-value=0.00091  Score=50.60  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++++|+.|+|||||++.+.+
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            378999999999999999975

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.62  E-value=0.0011  Score=55.56  Aligned_cols=23  Identities=26%  Similarity=0.449  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|||||||++.+.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999974

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.61  E-value=0.00085  Score=51.36  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=96.61  E-value=0.0013  Score=55.41  Aligned_cols=30  Identities=30%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccE
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGE   66 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~   66 (229)
                      -.++++|.+|+|||||++.|.|-.....|.
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~  129 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA  129 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence            489999999999999999999987654443

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.60  E-value=0.0014  Score=50.55  Aligned_cols=27  Identities=30%  Similarity=0.338  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ..+..+.|.||.|+|||||++.++..+
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence            345678999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.60  E-value=0.0012  Score=56.76  Aligned_cols=24  Identities=38%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+++|+|..|+|||||++.+.|-.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            389999999999999999999963

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.60  E-value=0.00093  Score=51.50  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4899999999999999999864

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.60  E-value=0.00095  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.59  E-value=0.00095  Score=52.05  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+++-
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.59  E-value=0.0022  Score=51.02  Aligned_cols=35  Identities=26%  Similarity=0.285  Sum_probs=27.8

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      +..++..-+.+ .|.-+.|.|++|+|||||...+..
T Consensus         4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            44566666665 588999999999999999887754

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.58  E-value=0.00046  Score=62.99  Aligned_cols=44  Identities=23%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL   68 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~   68 (229)
                      ++++.+ +.+-+|+..+|+|++|+|||||++.|++......+.|.
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~  183 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS  183 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence            345554 57778999999999999999999999876543334443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.58  E-value=0.00099  Score=51.20  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.57  E-value=0.00094  Score=52.94  Aligned_cols=22  Identities=36%  Similarity=0.679  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.++|.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            5899999999999999999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.56  E-value=0.0013  Score=54.57  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.|.|-.
T Consensus        24 ~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           24 RIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.55  E-value=0.008  Score=63.36  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       380 l~~G~lilI~G~pGsGKTtLaLqia~~~  407 (2050)
T 3cmu_A          380 LPMGRIVEIYGPESSGKTTLTLQVIAAA  407 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999987766543

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.54  E-value=0.0011  Score=50.98  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.54  E-value=0.0014  Score=50.93  Aligned_cols=26  Identities=27%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.=.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468999999999999999998754

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=96.54  E-value=0.0066  Score=51.76  Aligned_cols=44  Identities=14%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             CCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          156 DRPIWLLDEPSVALD-YDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       156 ~p~illlDEPt~~LD-~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      +++++++||.-. +. ......+...+.... .+..+|++|++...+
T Consensus       105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~~l  149 (324)
T 3u61_B          105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYS-SNCSIIITANNIDGI  149 (324)
T ss_dssp             CEEEEEEESCCC-GGGHHHHHHHHHHHHHHG-GGCEEEEEESSGGGS
T ss_pred             CCeEEEEECCcc-cCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcccc
Confidence            789999999843 44 556667777776653 356788888886643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.54  E-value=0.00098  Score=58.98  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.|+|.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999985

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.53  E-value=0.00076  Score=54.09  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -.++|+|+.|+|||||++.+.|-.
T Consensus        30 ~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.53  E-value=0.0015  Score=53.23  Aligned_cols=28  Identities=36%  Similarity=0.374  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+|.+++|.|+.||||||+++.|+..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999977654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.53  E-value=0.001  Score=51.52  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.53  E-value=0.0012  Score=52.81  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        14 ~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           14 SIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998865

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.52  E-value=0.0015  Score=52.91  Aligned_cols=26  Identities=31%  Similarity=0.378  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|-+++|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999997643

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.52  E-value=0.0011  Score=52.14  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999864

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.52  E-value=0.0013  Score=52.91  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.||||||+.+.|+-.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.51  E-value=0.0012  Score=52.16  Aligned_cols=23  Identities=17%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.49  E-value=0.0016  Score=54.51  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.++|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999964

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.49  E-value=0.0015  Score=55.24  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++.|+|++||||||+.+.|+-
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999986

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.49  E-value=0.0012  Score=51.53  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48999999999999999998753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.49  E-value=0.0012  Score=51.53  Aligned_cols=23  Identities=39%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.48  E-value=0.0011  Score=51.81  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        10 ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A           10 RVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            5899999999999999999873

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.48  E-value=0.0015  Score=51.48  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.48  E-value=0.0015  Score=55.11  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|||||||++.++|-.
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999964

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.48  E-value=0.0011  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999875

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=96.48  E-value=0.0063  Score=56.74  Aligned_cols=42  Identities=26%  Similarity=0.369  Sum_probs=31.6

Q ss_pred             eeeEEEeCCcEEEEEcCCCccHHHHHHHHHC-C---CCCCccEEEE
Q 027067           28 HVNISIHDGGALVLTGTNGSGKSTFLRMLAG-F---SKPSAGEILW   69 (229)
Q Consensus        28 ~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~G-l---~~p~~G~I~~   69 (229)
                      .+.+++.++-.+.|.|.+|||||++++.|.- +   ..|..-++++
T Consensus       206 pv~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil  251 (574)
T 2iut_A          206 PIITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM  251 (574)
T ss_dssp             EEEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred             EEEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence            4566677788999999999999999997543 3   4566655554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.48  E-value=0.0013  Score=51.65  Aligned_cols=23  Identities=17%  Similarity=0.535  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47999999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.47  E-value=0.003  Score=48.63  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            578999999999999999983

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0012  Score=51.87  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47999999999999999998653

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.46  E-value=0.0017  Score=53.96  Aligned_cols=27  Identities=26%  Similarity=0.476  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +|.+++|.|++||||||+++.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999987654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.46  E-value=0.0014  Score=50.60  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999998864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.46  E-value=0.0015  Score=55.54  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=21.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.|+|..
T Consensus        26 ~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           26 QIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHHCCC
Confidence            69999999999999999999975

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.45  E-value=0.0015  Score=51.77  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=19.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.45  E-value=0.0013  Score=50.65  Aligned_cols=22  Identities=23%  Similarity=0.293  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999998753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.44  E-value=0.0013  Score=52.66  Aligned_cols=24  Identities=25%  Similarity=0.275  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -.++|+|+.|+|||||++.+++-.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999999988753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.44  E-value=0.0017  Score=50.56  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999964

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.44  E-value=0.0013  Score=54.27  Aligned_cols=28  Identities=25%  Similarity=0.474  Sum_probs=22.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+|.+++|.|+.||||||+.+.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999987654

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.44  E-value=0.003  Score=61.49  Aligned_cols=26  Identities=27%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      ..+.|.||+|+|||++.+.|+.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~  614 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFD  614 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            47899999999999999999987654

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.43  E-value=0.0012  Score=51.51  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           23 HVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEECTTSSHHHHHHHTSCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.42  E-value=0.0017  Score=50.78  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        19 ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           19 QVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5799999999999999999885

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.41  E-value=0.0017  Score=52.54  Aligned_cols=23  Identities=26%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999885

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.41  E-value=0.0017  Score=56.86  Aligned_cols=25  Identities=24%  Similarity=0.228  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4899999999999999999987654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.41  E-value=0.0017  Score=58.17  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=23.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+..++.|+|++||||||+.+.|+.-
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45789999999999999999998753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.41  E-value=0.0015  Score=51.05  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999854

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.41  E-value=0.0019  Score=52.67  Aligned_cols=27  Identities=22%  Similarity=0.357  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +|.++++-|+.||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987664

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.40  E-value=0.0013  Score=52.00  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        26 ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           26 KVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCC
Confidence            68999999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.40  E-value=0.0021  Score=52.53  Aligned_cols=26  Identities=38%  Similarity=0.355  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+..+.|+|+.||||||+.+.|+-.+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998643

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.40  E-value=0.00047  Score=57.10  Aligned_cols=44  Identities=18%  Similarity=-0.025  Sum_probs=28.4

Q ss_pred             HhcCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067          153 LAIDRPIWLLDEPSVA-LDYDGVRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       153 l~~~p~illlDEPt~~-LD~~~~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                      +..+|+++|+||+-.- .+......+++.+......|..++.++|
T Consensus        81 L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N  125 (228)
T 2r8r_A           81 LKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN  125 (228)
T ss_dssp             HHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred             HhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence            4468999999998642 3432223334444445567888998888

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.40  E-value=0.0015  Score=51.18  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            48999999999999999998653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.39  E-value=0.0017  Score=52.18  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +-+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.38  E-value=0.0017  Score=51.36  Aligned_cols=22  Identities=45%  Similarity=0.758  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4899999999999999999863

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.38  E-value=0.002  Score=52.93  Aligned_cols=27  Identities=30%  Similarity=0.421  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +|.+++|.|+.||||||+.+.|+..++
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999987653

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.38  E-value=0.0016  Score=50.48  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        23 ~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           23 KVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999999753

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.38  E-value=0.002  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|+|+.|+|||||++.+.|-..
T Consensus        22 ki~~vG~~~vGKTsLi~~l~~~~~   45 (196)
T 3llu_A           22 RILLMGLRRSGKSSIQKVVFHKMS   45 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999999654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.38  E-value=0.0014  Score=51.31  Aligned_cols=23  Identities=30%  Similarity=0.485  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.37  E-value=0.002  Score=51.47  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|+|+.|+|||||++.+.+-..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~~   50 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNKF   50 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            479999999999999999998643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.37  E-value=0.0016  Score=50.11  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998643

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.36  E-value=0.0018  Score=49.89  Aligned_cols=27  Identities=26%  Similarity=0.255  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+..+.|.||.|+|||||++.++....
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.36  E-value=0.0014  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.540  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999988754

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.35  E-value=0.0022  Score=55.68  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.+++|+||+|||||||...|+--+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999998655

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.35  E-value=0.0016  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.35  E-value=0.002  Score=50.64  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC--
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.34  E-value=0.0017  Score=51.09  Aligned_cols=22  Identities=27%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.34  E-value=0.0017  Score=50.85  Aligned_cols=22  Identities=41%  Similarity=0.563  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4799999999999999999864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.33  E-value=0.0017  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.504  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.33  E-value=0.0019  Score=51.71  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.33  E-value=0.0017  Score=51.45  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999998653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.33  E-value=0.0017  Score=51.24  Aligned_cols=24  Identities=38%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      =.++|+|+.|+|||||++.+.+-.
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCC
Confidence            368999999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.32  E-value=0.0016  Score=51.62  Aligned_cols=23  Identities=35%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998653

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.32  E-value=0.0024  Score=52.60  Aligned_cols=28  Identities=29%  Similarity=0.436  Sum_probs=24.8

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+|.+++|.|+.||||||+.+.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999999987654

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.31  E-value=0.0023  Score=56.00  Aligned_cols=27  Identities=37%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++.+++|+||.|||||||...|+.-+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            567999999999999999999998663

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.30  E-value=0.0024  Score=52.33  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=27.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      .+|.++.+-|+.||||||+.+.|+-.+.. .+.+
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~   35 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   35 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence            36899999999999999999999987765 4443

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.30  E-value=0.0014  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999998864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.27  E-value=0.0021  Score=54.08  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=22.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|+|..|+|||||++.|.|..-
T Consensus        28 ~i~vvG~~~~GKSSLln~l~g~~~   51 (299)
T 2aka_B           28 QIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHHCCCc
Confidence            799999999999999999999753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.27  E-value=0.0018  Score=51.56  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           27 KLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=96.26  E-value=0.0024  Score=53.28  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|+|||||++.+.|-.
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.26  E-value=0.0023  Score=53.51  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++++|+.|+|||||++.+.|-.
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999999865

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.24  E-value=0.0018  Score=51.75  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.23  E-value=0.0025  Score=55.39  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+++|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.23  E-value=0.0014  Score=50.65  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=9.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48999999999999999988653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.22  E-value=0.0021  Score=50.29  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5899999999999999888754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.22  E-value=0.0021  Score=50.65  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        30 ~ki~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           30 MRILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999999764

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.22  E-value=0.016  Score=61.17  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=24.2

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      +++|+.+.|.||.|+|||||...++-
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ 1449 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIA 1449 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999999988754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.17  E-value=0.0021  Score=50.88  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4799999999999999999874

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.17  E-value=0.0035  Score=49.87  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            9 AVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998654

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.17  E-value=0.0017  Score=54.06  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++.+++|.|+.||||||+.+.|+..+.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            5788999999999999999999987663

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.16  E-value=0.0039  Score=50.59  Aligned_cols=25  Identities=36%  Similarity=0.711  Sum_probs=22.1

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHH
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRML   56 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i   56 (229)
                      -+++|+++.|.|+.|+|||||+--+
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~   50 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQF   50 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence            3789999999999999999997544

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0024  Score=49.97  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.12  E-value=0.0024  Score=52.33  Aligned_cols=28  Identities=25%  Similarity=0.315  Sum_probs=24.0

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+.+..++.|+||.||||+|..+.|+--
T Consensus        25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred             hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567789999999999999999999843

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0035  Score=50.76  Aligned_cols=22  Identities=45%  Similarity=0.758  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999974

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.09  E-value=0.0036  Score=49.64  Aligned_cols=24  Identities=38%  Similarity=0.383  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCccHHHHH-HHHHC
Q 027067           35 DGGALVLTGTNGSGKSTFL-RMLAG   58 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl-~~i~G   58 (229)
                      +|.++.+.||.||||||++ +.+..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999997 55543

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.08  E-value=0.011  Score=54.17  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=47.6

Q ss_pred             hcCCCCCCChhHHHHHHHHHHH--hc---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 027067          132 AKEKARMLSMGQRKRLQLARLL--AI---------------DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVA  194 (229)
Q Consensus       132 ~~~~~~~LSgGqkqRv~lAral--~~---------------~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~v  194 (229)
                      .++....+||||+|-.-+|.+.  ++               .-.++++||. +-+|.+..+...++++.+   |.-+|++
T Consensus       373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliia  448 (483)
T 3euj_A          373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIA  448 (483)
T ss_dssp             EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEE
T ss_pred             eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEE
Confidence            4556789999999965444433  22               2257999999 999999999888888765   7888898


Q ss_pred             eCC
Q 027067          195 THL  197 (229)
Q Consensus       195 tH~  197 (229)
                      |=+
T Consensus       449 tP~  451 (483)
T 3euj_A          449 APE  451 (483)
T ss_dssp             ESS
T ss_pred             Ccc
Confidence            876

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.08  E-value=0.0013  Score=52.64  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~   35 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGR   35 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.07  E-value=0.0033  Score=50.54  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -.++|+|..|+|||||++-+++-.
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            478999999999999998887653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.04  E-value=0.0026  Score=57.54  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -.++|+|.+|+|||||++.|+|-
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~   46 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGE   46 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            37999999999999999999883

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.02  E-value=0.0039  Score=53.96  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ..+++|+||+|||||||...|+.-.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999999998654

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.02  E-value=0.0041  Score=50.28  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      |.+++|=|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999987664

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.02  E-value=0.002  Score=50.14  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~~   45 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHLG   45 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.98  E-value=0.0013  Score=51.68  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=4.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        22 ~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           22 KVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEC-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.97  E-value=0.003  Score=50.04  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            48999999999999999997643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0034  Score=50.56  Aligned_cols=23  Identities=35%  Similarity=0.544  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.89  E-value=0.0037  Score=49.65  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      =.++|+|+.|+|||||++.+.+
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            3689999999999999988874

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.88  E-value=0.0037  Score=50.17  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.84  E-value=0.0048  Score=48.55  Aligned_cols=45  Identities=24%  Similarity=0.179  Sum_probs=31.0

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      .++.++++||. ..++......+..++... ..+..+|++|+....+
T Consensus       101 ~~~~vliiDe~-~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~~~~  145 (226)
T 2chg_A          101 APFKIIFLDEA-DALTADAQAALRRTMEMY-SKSCRFILSCNYVSRI  145 (226)
T ss_dssp             CSCEEEEEETG-GGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGGS
T ss_pred             cCceEEEEeCh-hhcCHHHHHHHHHHHHhc-CCCCeEEEEeCChhhc
Confidence            36889999994 556777677777776653 2356678888776543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.81  E-value=0.0065  Score=51.55  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      -.++++|.+|+|||||++.|.|-.....|
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~  149 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKNIAKTG  149 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred             ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence            36899999999999999999997644333

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.79  E-value=0.0039  Score=49.45  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|+.|+|||||++.+.+-
T Consensus        11 ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998854

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.72  E-value=0.0057  Score=54.77  Aligned_cols=24  Identities=38%  Similarity=0.440  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+++|+||+|||||||.+.|+--+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999988644

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.72  E-value=0.0062  Score=49.33  Aligned_cols=23  Identities=39%  Similarity=0.468  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.|+||.||||+|..+.|+--+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.71  E-value=0.0062  Score=51.34  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++..+.|.||.|+|||||.+.++..+
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l   91 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLL   91 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45579999999999999999888765

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.67  E-value=0.0018  Score=58.54  Aligned_cols=44  Identities=23%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             EEEeCC--cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeC
Q 027067           31 ISIHDG--GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDI   74 (229)
Q Consensus        31 l~i~~G--e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~   74 (229)
                      |.+.++  .+++|+|++|+||||++..|++.+.....+|.+-+.|.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            444434  59999999999999999999998764444566655444

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.64  E-value=0.049  Score=45.05  Aligned_cols=40  Identities=20%  Similarity=0.107  Sum_probs=30.4

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      .+.+++++||---..|      +.++++.+...|..||++-++.++
T Consensus        89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF  128 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTF  128 (234)
T ss_dssp             TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEeccccc
Confidence            6789999999877754      445555555678999999998653

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.63  E-value=0.0031  Score=57.05  Aligned_cols=40  Identities=23%  Similarity=0.483  Sum_probs=30.0

Q ss_pred             eeeeEEEeCCcE--EEEEcCCCccHHHHHHHHHCCCCCCccE
Q 027067           27 RHVNISIHDGGA--LVLTGTNGSGKSTFLRMLAGFSKPSAGE   66 (229)
Q Consensus        27 ~~vsl~i~~Ge~--~~iiG~NGsGKSTLl~~i~Gl~~p~~G~   66 (229)
                      +.+.-.+..|.+  +.|.||+|+|||||.++|+......-..
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~   80 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVER   80 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEE
Confidence            344445556665  8999999999999999999987654333

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.62  E-value=0.0027  Score=52.60  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +.|.||+|+|||||+++++..
T Consensus        47 vll~G~~GtGKT~la~~la~~   67 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGE   67 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            789999999999999999874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.57  E-value=0.0061  Score=52.72  Aligned_cols=36  Identities=22%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN   70 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~   70 (229)
                      +|..+.|.||.|+|||||.+.++.........+.+.
T Consensus        69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~  104 (368)
T 3uk6_A           69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA  104 (368)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence            466899999999999999999998765433334443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.56  E-value=0.0061  Score=53.24  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ..-+++|+|+.|+|||||++.|++.+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.49  E-value=0.0075  Score=53.75  Aligned_cols=57  Identities=14%  Similarity=0.047  Sum_probs=33.6

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 027067          136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATH  196 (229)
Q Consensus       136 ~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH  196 (229)
                      ...+|.++..++.-...+...|-++++    |-.|....+.+..+.+.+.+.+..+|.+|-
T Consensus       195 ~~~~~~~e~~~l~~~~~~~~kP~i~v~----NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA  251 (397)
T 1wxq_A          195 PTKWSQDDLLAFASEIRRVNKPMVIAA----NKADAASDEQIKRLVREEEKRGYIVIPTSA  251 (397)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEE----ECGGGSCHHHHHHHHHHHHHTTCEEEEECH
T ss_pred             cccCCHHHHHHHHHhhhccCCCEEEEE----eCccccchHHHHHHHHHHhhcCCcEEEEec
Confidence            347888888888777767778988887    222222123344444444444555555553

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.45  E-value=0.0076  Score=50.13  Aligned_cols=26  Identities=23%  Similarity=0.229  Sum_probs=22.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+...+.|.||.|+|||||.+.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34457889999999999999999875

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.44  E-value=0.0025  Score=50.42  Aligned_cols=23  Identities=22%  Similarity=0.215  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      =.++|+|+.|+|||||++.+.+-
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            36899999999999999888753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.42  E-value=0.0098  Score=50.99  Aligned_cols=25  Identities=36%  Similarity=0.337  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.-+.|.||.|+|||+|+++|+...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998654

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.41  E-value=0.0081  Score=50.36  Aligned_cols=25  Identities=28%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.-+.|.||.|+|||||.+.++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999999765

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.41  E-value=0.0089  Score=51.76  Aligned_cols=25  Identities=16%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +..+.|.||.|+|||||++.++...
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998754

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.38  E-value=0.0099  Score=50.48  Aligned_cols=26  Identities=27%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .|.++.|.||.|+|||||++.++...
T Consensus        30 ~~~~v~i~G~~G~GKT~Ll~~~~~~~   55 (350)
T 2qen_A           30 NYPLTLLLGIRRVGKSSLLRAFLNER   55 (350)
T ss_dssp             HCSEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             cCCeEEEECCCcCCHHHHHHHHHHHc
Confidence            46899999999999999999987543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.37  E-value=0.0068  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.++|-.
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999853

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.36  E-value=0.0056  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=21.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|+|||||++.|.|..
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999964

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.36  E-value=0.011  Score=50.48  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -.++|+|+.|+|||||++.+.+-
T Consensus         4 ~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            4 SKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	5e-35
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	2e-34
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	5e-33
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	2e-31
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	5e-31
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-30
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	7e-30
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	8e-30
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-28
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-28
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-28
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	3e-28
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	8e-28
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	1e-27
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	2e-26
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	5e-25
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	5e-25
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	8e-25
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	2e-23
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	4e-22
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	3e-11
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	2e-07
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	3e-06
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-06
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	5e-04

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  121 bits (305), Expect = 5e-35
 Identities = 54/196 (27%), Positives = 101/196 (51%), Gaps = 9/196 (4%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           +L ++++S   + + +L  + ++I  G  +   G NG GK+T L+ ++ + KP  GEI++
Sbjct: 2   KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 60

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLG 129
           NG          + K ++ +L  +  V  K +V D ++    L G + N    ++ +   
Sbjct: 61  NGVP------ITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV 114

Query: 130 RLA--KEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
            +   K+K   LS G  +R+QLA  L ++  I++LD+P VA+D D    +   I E  K+
Sbjct: 115 EVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE 174

Query: 188 GGIVIVATHLPIQIED 203
            GIVI+++   +   D
Sbjct: 175 KGIVIISSREELSYCD 190

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  121 bits (305), Expect = 2e-34
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+N++        +  +N++I DG  LVL G +G GK+T LRM+AG  +P+ G I +   
Sbjct: 9   LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDR 68

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMG 127
           D+T      +    ++ +    AV    TV +N+ +   ++    + +      A EL+ 
Sbjct: 69  DVTYLPPKDRN---ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAEHRK 186
           +  L       LS GQR+R+ +AR + ++  + L+DEP   LD    V +   I    +K
Sbjct: 126 IEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQK 185

Query: 187 KGGIVIVATHLPIQIEDAMNL 207
                I  TH      +AM +
Sbjct: 186 LKVTTIYVTH---DQVEAMTM 203

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  117 bits (295), Expect = 5e-33
 Identities = 50/215 (23%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           L  +N+       + L  V+IS++ G   ++ G NGSGKST + ++ GF K   G + + 
Sbjct: 5   LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS----------- 119
             DIT       Y   +          ++ TVL+N+   E+  G+   +           
Sbjct: 65  NKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE 124

Query: 120 -------LPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD 172
                     LE + L  L   KA  LS GQ K +++ R L  +  + ++DEP   +   
Sbjct: 125 EEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPG 184

Query: 173 GVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL 207
               +   + E + KG   ++  H   +++  +N 
Sbjct: 185 LAHDIFNHVLELKAKGITFLIIEH---RLDIVLNY 216

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  112 bits (282), Expect = 2e-31
 Identities = 45/197 (22%), Positives = 102/197 (51%), Gaps = 7/197 (3%)

Query: 11  LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
           +++K++      ++IL+ ++  I +G    L G NG+GK+T LR+++   KPS+G +   
Sbjct: 3   VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62

Query: 71  GHDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALEL 125
           G ++ +    H+ +  +++L  +         ++ +++         + +      A E+
Sbjct: 63  GKNVVEEP--HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 120

Query: 126 MGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
            GLG   K++    S G  ++L +AR L ++  + +LDEP+  LD    R +  I+ +  
Sbjct: 121 AGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 180

Query: 186 KKGGIVIVATHLPIQIE 202
           ++G  ++V++H  +++E
Sbjct: 181 QEGLTILVSSHNMLEVE 197

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  112 bits (281), Expect = 5e-31
 Identities = 41/200 (20%), Positives = 87/200 (43%), Gaps = 8/200 (4%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++++     A   ++ +++ +  G  + L G NG+GK+T L  +AG  +   G+I++NG 
Sbjct: 9   VQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALE-----LMG 127
           DIT        ++ +  +     +  + TV +N+         +      LE        
Sbjct: 69  DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPR 128

Query: 128 LGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKK 187
           L    K+    LS G+++ L + R L     + ++DEPS+ L    V  +  +I +  ++
Sbjct: 129 LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE 188

Query: 188 GGIVIVATHLPIQIEDAMNL 207
           G  +++          A+ +
Sbjct: 189 GTTILLVEQ---NALGALKV 205

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  110 bits (276), Expect = 2e-30
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 13/186 (6%)

Query: 24  QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQY 83
             L++VN++I +G  + + G +GSGKST L ++    KP+ GE+  +             
Sbjct: 19  YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78

Query: 84  KLQLNWLSL---KDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALELMGL----GRL 131
           K++ + +     +  +    T L+NV+   + + +   S       ALE + +     R 
Sbjct: 79  KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138

Query: 132 AKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY-DGVRLLEYIIAEHRKKGGI 190
           A  K   LS GQ++R+ +AR LA + PI L D+P+ ALD   G ++++ +   + + G  
Sbjct: 139 ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKT 198

Query: 191 VIVATH 196
           V+V TH
Sbjct: 199 VVVVTH 204

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  109 bits (274), Expect = 7e-30
 Identities = 55/206 (26%), Positives = 94/206 (45%), Gaps = 19/206 (9%)

Query: 10  RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
           +L + ++       ++L+ V++    G  + + G++GSGKSTFLR +    KPS G I+ 
Sbjct: 2   KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61

Query: 70  NGHDITQSGIFHQYKLQLNWLSLKDAVKE------------KFTVLDNVQWFEVLEGKQG 117
           NG +I             +   L+                   TVL+NV    +      
Sbjct: 62  NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS 121

Query: 118 NS------LPALELMGLGRLAKEK-ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALD 170
                   L  L  +G+   A+ K    LS GQ++R+ +AR LA++  + L DEP+ ALD
Sbjct: 122 KHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 181

Query: 171 YDGVRLLEYIIAEHRKKGGIVIVATH 196
            + V  +  I+ +  ++G  ++V TH
Sbjct: 182 PELVGEVLRIMQQLAEEGKTMVVVTH 207

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  109 bits (274), Expect = 8e-30
 Identities = 50/213 (23%), Positives = 90/213 (42%), Gaps = 15/213 (7%)

Query: 6   PPLP----RLLLKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF 59
            P+     R+ + +VS     N   IL+ +N+SI  G  +   G +G GKST + ++  F
Sbjct: 8   QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67

Query: 60  SKPSAGEILWNGHDITQSGIFH--------QYKLQLNWLSLKDAVKEKFTVLDNVQWFEV 111
              ++G+IL +GH+I               Q    L   ++K+ +        + +  E 
Sbjct: 68  YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEA 127

Query: 112 LEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDY 171
            +    +        G      E+   LS GQ++RL +AR+   + PI +LDE + ALD 
Sbjct: 128 AKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 187

Query: 172 DGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204
           +   +++  +     K    ++  H    I  A
Sbjct: 188 ESESIIQEALDVLS-KDRTTLIVAHRLSTITHA 219

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (264), Expect = 1e-28
 Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 12/196 (6%)

Query: 13  LKNVSC----MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEIL 68
           L N++          Q L +V++ +  G    + G +G+GKST +R +    +P+ G +L
Sbjct: 4   LSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL 63

Query: 69  WNGHDITQSGIFHQYKL--QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP----- 121
            +G ++T        K   Q+  +     +    TV  NV     L+    + +      
Sbjct: 64  VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTE 123

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
            L L+GLG         LS GQ++R+ +AR LA +  + L DE + ALD    R +  ++
Sbjct: 124 LLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183

Query: 182 AEHRKKGGI-VIVATH 196
            +  ++ G+ +++ TH
Sbjct: 184 KDINRRLGLTILLITH 199

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  105 bits (263), Expect = 1e-28
 Identities = 41/191 (21%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L++V+        L  ++  +  G  L L G NG+GKST L  +AG      G I + G 
Sbjct: 6   LQDVA----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQ 60

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA 132
            +       +  L   +LS +        V   +   +  + +          + L    
Sbjct: 61  PLEAWSA-TKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL 119

Query: 133 KEKARMLSMGQRKRLQLARLLA-------IDRPIWLLDEPSVALDYDGVRLLEYIIAEHR 185
                 LS G+ +R++LA ++            + LLDEP  +LD      L+ I++   
Sbjct: 120 GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALC 179

Query: 186 KKGGIVIVATH 196
           ++G  +++++H
Sbjct: 180 QQGLAIVMSSH 190

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 40/195 (20%), Positives = 71/195 (36%), Gaps = 14/195 (7%)

Query: 5   KPPLPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSA 64
                 +   ++        +L+++N++I  G  L +TG+ GSGK++ L ++ G  + S 
Sbjct: 33  SSDENNVSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASE 90

Query: 65  GEILWNGHD--ITQSG-IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
           G I  +G     +Q   I      +     +        +V+   Q  + +         
Sbjct: 91  GIIKHSGRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAE---- 146

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
                    +  E    LS GQR R+ LAR +  D  ++LLD P   LD      +    
Sbjct: 147 -----QDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 201

Query: 182 AEHRKKGGIVIVATH 196
                     I+ T 
Sbjct: 202 VCKLMANKTRILVTS 216

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  104 bits (262), Expect = 3e-28
 Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 15/204 (7%)

Query: 13  LKNVS-CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG 71
            ++V     +++QILR ++        +   G +G GKST   +L  F +P+AGEI  +G
Sbjct: 4   ARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG 63

Query: 72  HDITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGL--- 128
             I    +   ++ Q+ ++S +D+     T+ +N+ +    +    +    L+L      
Sbjct: 64  QPIDNISL-ENWRSQIGFVS-QDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121

Query: 129 --------GRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
                        E+   +S GQR+RL +AR    +  I +LDE + +LD +   +++  
Sbjct: 122 VENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181

Query: 181 IAEHRKKGGIVIVATHLPIQIEDA 204
           +     KG   +V  H    I DA
Sbjct: 182 LDSLM-KGRTTLVIAHRLSTIVDA 204

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  103 bits (259), Expect = 8e-28
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 12/204 (5%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L +V  +      +R +++ + DG  ++L G +G GK+T LRM+AG  +PS G+I     
Sbjct: 6   LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDK 65

Query: 73  DITQSG---IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALE 124
            +               +  +    A+    TV DN+ +   L       +        E
Sbjct: 66  LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAE 125

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEH 184
           L+GL  L   K R LS GQR+R+ L R +     ++L+DEP   LD      +   + + 
Sbjct: 126 LLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185

Query: 185 RKKGGI-VIVATHLPIQIEDAMNL 207
           +++ G+  I  TH      +AM +
Sbjct: 186 QRQLGVTTIYVTH---DQVEAMTM 206

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  103 bits (258), Expect = 1e-27
 Identities = 56/203 (27%), Positives = 83/203 (40%), Gaps = 12/203 (5%)

Query: 13  LKNVSCM--RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            +NV+          LR++N+ I  G  + L G +GSGKST   ++  F     G IL +
Sbjct: 16  FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMD 75

Query: 71  GHDIT---------QSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP 121
           GHD+          Q  +  Q     N     +    +       Q  E           
Sbjct: 76  GHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFI 135

Query: 122 ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYII 181
                GL  +  E   +LS GQR+R+ +AR L  D PI +LDE + ALD +  R ++  +
Sbjct: 136 NKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL 195

Query: 182 AEHRKKGGIVIVATHLPIQIEDA 204
            E + K    +V  H    IE A
Sbjct: 196 DELQ-KNRTSLVIAHRLSTIEQA 217

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 99.6 bits (248), Expect = 2e-26
 Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 18/204 (8%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           L+NV+       + + +N+ IH+G  +V  G +G GKST LRM+AG    ++G++     
Sbjct: 3   LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 62

Query: 73  DITQ---SGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP-----ALE 124
            +     +        Q   L          +V +N+ +   L G +   +        E
Sbjct: 63  RMNDTPPAERGVGMVFQSYAL------YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE 116

Query: 125 LMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYD-GVRLLEYIIAE 183
           ++ L  L   K + LS GQR+R+ + R L  +  ++LLDEP   LD    V++   I   
Sbjct: 117 VLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 176

Query: 184 HRKKGGIVIVATHLPIQIEDAMNL 207
           H++ G  +I  TH      +AM L
Sbjct: 177 HKRLGRTMIYVTH---DQVEAMTL 197

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 96.5 bits (240), Expect = 5e-25
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 13  LKNVSC--MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN 70
            +N+      ++  IL ++N+SI  G  + + G +GSGKST  +++  F  P  G++L +
Sbjct: 4   FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLID 63

Query: 71  GHDITQSGIFHQYKL--------QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPA 122
           GHD+  +      +          L   S+ D +      +   +     +    +   +
Sbjct: 64  GHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFIS 123

Query: 123 LELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIA 182
               G   +  E+   LS GQR+R+ +AR L  +  I + DE + ALDY+   ++   + 
Sbjct: 124 ELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183

Query: 183 EHRKKGGIVIVATHLPIQIEDA 204
           +   KG  VI+  H    +++A
Sbjct: 184 KIC-KGRTVIIIAHRLSTVKNA 204

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 96.3 bits (239), Expect = 5e-25
 Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 13/208 (6%)

Query: 10  RLLLKNVSC--MRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI 67
           R+++KNVS    +     L +VNI+I +G    + G +G+GK+TF+R++AG   PS GE+
Sbjct: 3   RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62

Query: 68  LWNGHDITQSG--IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP---- 121
            ++   +  +G  I      ++  +    A+    T  +N+ +           +     
Sbjct: 63  YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122

Query: 122 -ALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
              +++ +  +     R LS  Q++R+ LAR L  D  + LLDEP   LD         +
Sbjct: 123 EVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182

Query: 181 IAE-HRKKGGIVIVATHLPIQIEDAMNL 207
           + E   + G  ++V +H      D   +
Sbjct: 183 VKEVQSRLGVTLLVVSH---DPADIFAI 207

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.1 bits (239), Expect = 8e-25
 Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 13/205 (6%)

Query: 13  LKNVS---CMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW 69
            ++VS     R    +L+ +  ++  G    L G NGSGKST   +L    +P+ G++L 
Sbjct: 14  FQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLL 73

Query: 70  NGHDITQSGIFH-----QYKLQLNWL---SLKDAVKEKFTV-LDNVQWFEVLEGKQGNSL 120
           +G  + Q    +         Q   +   SL++ +    T      +          +S 
Sbjct: 74  DGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSF 133

Query: 121 PALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYI 180
            +    G      E    LS GQR+ + LAR L     + +LD+ + ALD +    +E +
Sbjct: 134 ISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQL 193

Query: 181 IAEHRKKGGI-VIVATHLPIQIEDA 204
           + E  ++    V++ T     +E A
Sbjct: 194 LYESPERYSRSVLLITQHLSLVEQA 218

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 92.0 bits (228), Expect = 2e-23
 Identities = 48/198 (24%), Positives = 91/198 (45%), Gaps = 10/198 (5%)

Query: 13  LKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGH 72
           ++++S  +     L ++++ +  G   V+ G  G+GK+ FL ++AGF  P +G IL +G 
Sbjct: 4   IESLS-RKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62

Query: 73  DITQSGIFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNS--LPALELMGLGR 130
           D+T        K  + ++    ++     V  N+++   ++  +     L     + +  
Sbjct: 63  DVTD---LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEH 119

Query: 131 LAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGI 190
           L       LS G+++R+ LAR L  +  I LLDEP  ALD         +++   KK  +
Sbjct: 120 LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179

Query: 191 -VIVATHLPIQIEDAMNL 207
            V+  TH      +A  +
Sbjct: 180 TVLHITH---DQTEARIM 194

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 88.9 bits (220), Expect = 4e-22
 Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 18/179 (10%)

Query: 28  HVNISIH-DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQS-------GI 79
            +N+         VL G  G+GKS FL ++AG  KP  GE+  NG DIT         G 
Sbjct: 15  RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF 74

Query: 80  FHQYKLQLNWLSLKDAVKEKFTVLDNVQ-WFEVLEGKQGNSLPALELMGLGRLAKEKARM 138
             Q       LS+   +      ++ V+    V E          E +G+  L   K   
Sbjct: 75  VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVRE--------MAEKLGIAHLLDRKPAR 126

Query: 139 LSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAE-HRKKGGIVIVATH 196
           LS G+R+R+ LAR L I   + LLDEP  A+D     +L   +    R+    ++  TH
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 15/166 (9%), Positives = 39/166 (23%), Gaps = 22/166 (13%)

Query: 39  LVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKE 98
           +++TG  G GK+T ++ +       A                            +   + 
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRD-----------------PETKKRT 45

Query: 99  KFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP 158
            F ++      ++   K   S   +   G+      +                     R 
Sbjct: 46  GFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPILERAYREAKKDRRK 101

Query: 159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA 204
           + ++DE      +      + +          V+    +       
Sbjct: 102 VIIIDEIGKMELFSKKF-RDLVRQIMHDPNVNVVATIPIRDVHPLV 146

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 137 RMLSMGQRKRLQLARLLAI----DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVI 192
             LS G++    LA L AI      P ++LDE   ALD   V+ +   I  HR      I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 193 VATHLPIQIEDAMNL 207
           V +      E +  L
Sbjct: 391 VISLKNTMFEKSDAL 405

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.9
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.78
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.77
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.38
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	99.24
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.13
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.87
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.71
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	98.14
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	98.03
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.9
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.9
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.85
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.83
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.82
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.78
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.77
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.76
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.71
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.71
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.67
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.63
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.61
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.6
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.55
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.55
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.55
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.54
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.53
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.51
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.48
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.46
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.44
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.43
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.38
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.34
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.33
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.32
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.3
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.27
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.26
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.24
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.23
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.23
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.22
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.21
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.19
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.16
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.16
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.15
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.12
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.1
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.1
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.1
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.09
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.09
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.08
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.06
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.06
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.06
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.04
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.01
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.99
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.98
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.95
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.93
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.93
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.91
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.9
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.9
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.89
d1okkd2	207	GTPase domain of the signal recognition particle r	96.89
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.89
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.86
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.86
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.86
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.85
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.83
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.83
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.82
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.81
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.8
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.79
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.78
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.73
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.71
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.71
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.71
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.7
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.69
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.68
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.65
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.65
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.61
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.6
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.6
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.6
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.59
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.59
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.54
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.54
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.48
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.47
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.46
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.46
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.45
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.45
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.45
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.45
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.43
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.4
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.38
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.36
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.35
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.3
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.3
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.29
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.29
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.26
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.26
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.21
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.2
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.2
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.19
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.19
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.18
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.17
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.14
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.12
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.11
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.09
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.05
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.02
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.01
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.98
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.96
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.96
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.91
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.84
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.81
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.76
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.73
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.71
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.67
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.61
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.57
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.57
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.56
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.56
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.49
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.49
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.45
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.43
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.4
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.39
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.37
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.34
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.19
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.16
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.92
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.73
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.59
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.56
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.55
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.49
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.4
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.38
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.34
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.23
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.18
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.08
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.05
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.0
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	94.0
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.73
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.56
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.26
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.7
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.7
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.64
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.62
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.59
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.53
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.25
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.2
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.1
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.03
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.81
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.7
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.56
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.12
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.27
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	90.14
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.09
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.09
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.98
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.94
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.85
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.5
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.47
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.16
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.31
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.26
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	88.24
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.08
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	87.82
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.7
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.33
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.12
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	86.76
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	85.68
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	84.72
d1tuea_	205	Replication protein E1 helicase domain {Human papi	84.07
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	84.02
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	82.53
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.4
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.27

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1e-61  Score=407.17  Aligned_cols=194  Identities=26%  Similarity=0.336  Sum_probs=171.7

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .|+++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....   .++.++|
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~---~~r~ig~   82 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISM   82 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEE
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc---ccceEEE
Confidence            4999999999999999999999999999999999999999999999999999999999999999987543   3467999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      ++|++.+++.+||+||+.++....+.     ..++.++++.++|.++.++++.+|||||||||+|||||+.+|++|||||
T Consensus        83 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE  162 (239)
T d1v43a3          83 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE  162 (239)
T ss_dssp             EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred             EeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecC
Confidence            99999999999999999886544332     2346688999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||++||+.++..+.+++.++++ .|.|||+||||++++...+|
T Consensus       163 Pts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~d  205 (239)
T d1v43a3         163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD  205 (239)
T ss_dssp             TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence            9999999999999999999855 49999999999999999876

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=3.2e-61  Score=401.91  Aligned_cols=193  Identities=24%  Similarity=0.337  Sum_probs=178.0

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      +|+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....   .+++++|
T Consensus         1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~---~~r~ig~   76 (229)
T d3d31a2           1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---EKHDIAF   76 (229)
T ss_dssp             CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH---HHHTCEE
T ss_pred             CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch---hHhccee
Confidence            5899999999987 48999999999999999999999999999999999999999999999999976543   3568999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc--cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK--QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSV  167 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~  167 (229)
                      ++|++.+++.+||+||+.++....+.  .+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|||||||+
T Consensus        77 v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts  156 (229)
T d3d31a2          77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS  156 (229)
T ss_dssp             ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred             eccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence            99999999999999999988765542  3457789999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          168 ALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       168 ~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +||+.++..+.+++.++++ .|.|||+||||++++...+|
T Consensus       157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d  196 (229)
T d3d31a2         157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD  196 (229)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC
Confidence            9999999999999999854 58999999999999999875

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=3.5e-61  Score=404.41  Aligned_cols=197  Identities=26%  Similarity=0.347  Sum_probs=179.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh---hhhhhc
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF---HQYKLQ   86 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~---~~~~~~   86 (229)
                      .|+++||+|+||++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++......   ...+++
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~   82 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD   82 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence            58999999999999999999999999999999999999999999999999999999999999998643211   123567


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEE
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWL  161 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ill  161 (229)
                      ++|++|++.+++.+||+||+.++....+.     .+++.++++.+++.+..+++|++|||||||||+|||||+.+|++||
T Consensus        83 ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl  162 (240)
T d1g2912          83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL  162 (240)
T ss_dssp             EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             ceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            99999999999999999999988765542     2346789999999999999999999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      |||||+|||+.++..+++++.+++++ |.|||+||||++++...+|
T Consensus       163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~d  208 (240)
T d1g2912         163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD  208 (240)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred             ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCC
Confidence            99999999999999999999998655 9999999999999999876

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-61  Score=403.09  Aligned_cols=194  Identities=25%  Similarity=0.388  Sum_probs=142.2

Q ss_pred             EEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEe
Q 027067           11 LLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWL   90 (229)
Q Consensus        11 l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~   90 (229)
                      ++++||+|+|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.....   .+++++|+
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~---~~r~ig~v   77 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---AERGVGMV   77 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG---GGTCEEEE
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch---hhceeeee
Confidence            689999999999999999999999999999999999999999999999999999999999999976543   35679999


Q ss_pred             ecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCC
Q 027067           91 SLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEP  165 (229)
Q Consensus        91 ~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEP  165 (229)
                      +|++.+++.+||+||+.++....+.     .+++.++++.+++.+..+++|++|||||||||+|||||+.+|++||||||
T Consensus        78 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP  157 (232)
T d2awna2          78 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP  157 (232)
T ss_dssp             CSSCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEEST
T ss_pred             ccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            9999999999999999987654332     23467899999999999999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH-HhCCcEEEEEeCChhhHHhhhcc
Q 027067          166 SVALDYDGVRLLEYIIAEH-RKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       166 t~~LD~~~~~~l~~~l~~~-~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |+|||+.++..+++++.++ ++.|.|||+||||++++...+|-
T Consensus       158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr  200 (232)
T d2awna2         158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK  200 (232)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            9999999999999999997 45699999999999999998763

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2e-60  Score=399.86  Aligned_cols=197  Identities=24%  Similarity=0.345  Sum_probs=178.0

Q ss_pred             cEEEEeEEEEeCCe----eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchh--hhh
Q 027067           10 RLLLKNVSCMRNAQ----QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIF--HQY   83 (229)
Q Consensus        10 ~l~l~~l~~~~~~~----~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~--~~~   83 (229)
                      ||+++||+++|++.    .+|+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++...+..  ...
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA   80 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence            68999999999643    689999999999999999999999999999999999999999999999999765432  234


Q ss_pred             hhcceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCC
Q 027067           84 KLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRP  158 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~  158 (229)
                      +++++|++|++.+++.+||+||+.++....+.     ..++.++++.+||.+..+++|++|||||||||+|||||+.+|+
T Consensus        81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~  160 (240)
T d3dhwc1          81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK  160 (240)
T ss_dssp             HHHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCS
T ss_pred             hccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCC
Confidence            56799999999999999999999987655432     2346789999999999999999999999999999999999999


Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||||||++||+.++..+.+++.+++++ |.|||+||||++++...+|
T Consensus       161 lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~d  209 (240)
T d3dhwc1         161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD  209 (240)
T ss_dssp             EEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCS
T ss_pred             eEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCC
Confidence            99999999999999999999999998665 9999999999999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=8.3e-61  Score=402.11  Aligned_cols=197  Identities=26%  Similarity=0.375  Sum_probs=177.2

Q ss_pred             cEEEEeEEEEe--CCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCch--hhhhhh
Q 027067           10 RLLLKNVSCMR--NAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGI--FHQYKL   85 (229)
Q Consensus        10 ~l~l~~l~~~~--~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~--~~~~~~   85 (229)
                      .|+++||+|+|  ++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.  ....++
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr   82 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR   82 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence            48999999999  56789999999999999999999999999999999999999999999999999864321  122456


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCc-----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeE
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGK-----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIW  160 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~il  160 (229)
                      +++|++|++.+++.+||+||+.++....+.     .+++.++++.+||.+..+++|++|||||||||+|||||+.+|++|
T Consensus        83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~ll  162 (242)
T d1oxxk2          83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL  162 (242)
T ss_dssp             CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred             cceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccce
Confidence            799999999999999999999987554332     234678999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          161 LLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       161 llDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      ||||||++||+.++..+.++++++++ .|.|||+||||++++..++|
T Consensus       163 llDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~d  209 (242)
T d1oxxk2         163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD  209 (242)
T ss_dssp             EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred             eecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCC
Confidence            99999999999999999999999854 49999999999999999876

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=9.8e-60  Score=393.53  Aligned_cols=196  Identities=27%  Similarity=0.357  Sum_probs=171.5

Q ss_pred             cEEEEeEEEEeCC----eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhh---
Q 027067           10 RLLLKNVSCMRNA----QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQ---   82 (229)
Q Consensus        10 ~l~l~~l~~~~~~----~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~---   82 (229)
                      ||+++||+|+|+.    ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+..+.   
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~   80 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI   80 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence            6899999999953    248999999999999999999999999999999999999999999999999987654321   


Q ss_pred             hhhcceEeecccccCCCCCHHHhHHHHHHhcCc--------cccHHHHHHHhCCCh-hhcCCCCCCChhHHHHHHHHHHH
Q 027067           83 YKLQLNWLSLKDAVKEKFTVLDNVQWFEVLEGK--------QGNSLPALELMGLGR-LAKEKARMLSMGQRKRLQLARLL  153 (229)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~--------~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral  153 (229)
                      .+.+++|++|++.+++.+||+||+.++......        ..++.++++.+++.+ +.+++|++|||||||||+|||||
T Consensus        81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL  160 (230)
T d1l2ta_          81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL  160 (230)
T ss_dssp             HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhh
Confidence            245799999999999999999999987654321        123557888999975 67999999999999999999999


Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      +.+|++|||||||++||+.+++.+++++.++.+ .|+|||+||||++.+ ..+|
T Consensus       161 ~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~d  213 (230)
T d1l2ta_         161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE  213 (230)
T ss_dssp             TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSS
T ss_pred             hcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCC
Confidence            999999999999999999999999999999865 489999999999876 4555

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.2e-59  Score=396.13  Aligned_cols=200  Identities=20%  Similarity=0.289  Sum_probs=177.5

Q ss_pred             CCcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067            8 LPRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus         8 ~~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .++|+++||+|+||++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+.....+.++
T Consensus         4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi   83 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI   83 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred             ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999998766544445678


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccc----cHHHHHHHh-CCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEE
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQG----NSLPALELM-GLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLL  162 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~----~~~~~l~~~-~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illl  162 (229)
                      +|++|+..+++.+||+||+.+.........    ...++++.+ ++.+..++++++|||||||||+|||||+.+|++|||
T Consensus        84 ~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLll  163 (240)
T d1ji0a_          84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence            999999999999999999987653322211    233445554 677888999999999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          163 DEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       163 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||||+|||+.++..+++++++++++|.|||++|||++++...+|.
T Consensus       164 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~dr  208 (240)
T d1ji0a_         164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY  208 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSE
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence            999999999999999999999998899999999999999998763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=5.3e-59  Score=395.46  Aligned_cols=199  Identities=25%  Similarity=0.319  Sum_probs=180.2

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+|+++||+++|++.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+.....+.+++
T Consensus         3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~   82 (254)
T d1g6ha_           3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV   82 (254)
T ss_dssp             EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred             ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence            37999999999999999999999999999999999999999999999999999999999999999987766555666799


Q ss_pred             EeecccccCCCCCHHHhHHHHHHh-----------cC---c----cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHH
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVL-----------EG---K----QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~-----------~~---~----~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lA  150 (229)
                      |++|++.+++.+||.||+.++...           ..   .    ..++.++++.+++.+..++++.+|||||||||+||
T Consensus        83 ~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iA  162 (254)
T d1g6ha_          83 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG  162 (254)
T ss_dssp             ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred             ccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHH
Confidence            999999999999999999864211           00   0    12345678899999999999999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      |||+.+|++|||||||+|||+.+++.+.+++++++++|.|||++|||++++..++|.
T Consensus       163 raL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Dr  219 (254)
T d1g6ha_         163 RALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH  219 (254)
T ss_dssp             HHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSE
T ss_pred             HHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCE
Confidence            999999999999999999999999999999999999999999999999999998863

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=3.6e-58  Score=390.65  Aligned_cols=197  Identities=27%  Similarity=0.389  Sum_probs=176.2

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCc-----------
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSG-----------   78 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~-----------   78 (229)
                      .|+++||+|+||++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++....           
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~   81 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK   81 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence            589999999999999999999999999999999999999999999999999999999999999986321           


Q ss_pred             -hhhhhhhcceEeecccccCCCCCHHHhHHHHHH-hcCc-----cccHHHHHHHhCCChh-hcCCCCCCChhHHHHHHHH
Q 027067           79 -IFHQYKLQLNWLSLKDAVKEKFTVLDNVQWFEV-LEGK-----QGNSLPALELMGLGRL-AKEKARMLSMGQRKRLQLA  150 (229)
Q Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~-~~~~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lA  150 (229)
                       .....+++++|++|++.+++.+||.||+.++.. ....     .+++.++++.+++.+. .+++|.+|||||||||+||
T Consensus        82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iA  161 (258)
T d1b0ua_          82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA  161 (258)
T ss_dssp             HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred             hHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHH
Confidence             122356789999999999999999999987642 2211     2346788999999764 5788999999999999999


Q ss_pred             HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          151 RLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       151 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |||+.+|++|||||||+|||+.++..+.+++++++++|.|||+||||++++...+|
T Consensus       162 raL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~ad  217 (258)
T d1b0ua_         162 RALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS  217 (258)
T ss_dssp             HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS
T ss_pred             HHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCC
Confidence            99999999999999999999999999999999999899999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6.5e-58  Score=385.03  Aligned_cols=196  Identities=23%  Similarity=0.403  Sum_probs=180.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++....  ...+..++|
T Consensus         2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~--~~~~~~i~~   79 (238)
T d1vpla_           2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP--HEVRKLISY   79 (238)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH--HHHHTTEEE
T ss_pred             CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccCh--HHHHhhEeE
Confidence            589999999999999999999999999999999999999999999999999999999999999987643  345678999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCcc-----ccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGKQ-----GNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDE  164 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDE  164 (229)
                      +||...+++++|+.||+.++.......     ..+..+++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus        80 vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE  159 (238)
T d1vpla_          80 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE  159 (238)
T ss_dssp             ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             eeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            999999999999999998876554322     235667889999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhcc
Q 027067          165 PSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNL  207 (229)
Q Consensus       165 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~  207 (229)
                      ||+|||+.+++.+.+++++++++|+|||++|||++++...||.
T Consensus       160 Pt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~dr  202 (238)
T d1vpla_         160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR  202 (238)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence            9999999999999999999998999999999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=3.3e-56  Score=373.35  Aligned_cols=190  Identities=26%  Similarity=0.332  Sum_probs=170.1

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .|++ ++.++|++..+  ||||++. +|+++|+||||||||||+|+|+|+++|++|+|+++|+++.....   .+++++|
T Consensus         2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~---~~r~ig~   74 (240)
T d2onka1           2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---ERRGIGF   74 (240)
T ss_dssp             CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT---TTSCCBC
T ss_pred             EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH---HHcCcee
Confidence            4677 67899999876  8999995 68999999999999999999999999999999999999987543   3568999


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcC---ccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEG---KQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ++|++.+++.+||+||+.++.....   ..+++.++++.+|+.++.+++|.+|||||||||+|||||+.+|++|||||||
T Consensus        75 v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt  154 (240)
T d2onka1          75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL  154 (240)
T ss_dssp             CCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred             eccchhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence            9999999999999999998632211   1245778999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCChhhHHhhhc
Q 027067          167 VALDYDGVRLLEYIIAEHRKK-GGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~~-g~tii~vtH~~~~~~~~~~  206 (229)
                      +|||+.++..+.+++++++++ |.|||+||||++++...+|
T Consensus       155 s~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~ad  195 (240)
T d2onka1         155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD  195 (240)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence            999999999999999998654 9999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.1e-55  Score=372.33  Aligned_cols=191  Identities=26%  Similarity=0.402  Sum_probs=162.5

Q ss_pred             cEEEEeEEEEeCC-eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           10 RLLLKNVSCMRNA-QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        10 ~l~l~~l~~~~~~-~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      ||+++||+|+|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+. ..++.+++
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~i~   79 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-ENWRSQIG   79 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-SCCTTTCC
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccH-HHHHhheE
Confidence            6899999999954 679999999999999999999999999999999999999999999999999987543 34577899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.+++. |++||+.++...........++++..++.++.           .+++.+|||||||||+|||||+.+|
T Consensus        80 ~v~Q~~~lf~~-ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p  158 (242)
T d1mv5a_          80 FVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNP  158 (242)
T ss_dssp             EECCSSCCCCE-EHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred             EEccccccCCc-chhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            99999998876 99999876432222233345556655553322           2346689999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|||||||||+||+.++..+.+.++++. +|+|||+|||+++.+..
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~~~~  203 (242)
T d1mv5a_         159 KILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVD  203 (242)
T ss_dssp             SEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHH
T ss_pred             CEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHh
Confidence            9999999999999999999999999986 48999999999998876

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-54  Score=366.62  Aligned_cols=195  Identities=22%  Similarity=0.290  Sum_probs=162.5

Q ss_pred             CcEEEEeEEEEeCC---eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhh
Q 027067            9 PRLLLKNVSCMRNA---QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKL   85 (229)
Q Consensus         9 ~~l~l~~l~~~~~~---~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~   85 (229)
                      ..|+++||+|+|++   +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++..... ..+++
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~-~~~r~   88 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH-RYLHR   88 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH-HHHHH
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhh-HHHHH
Confidence            46999999999965   359999999999999999999999999999999999999999999999999977653 45677


Q ss_pred             cceEeecccccCCCCCHHHhHHHHHHhcCccccHHH---------HHHHh--CCChhhcCCCCCCChhHHHHHHHHHHHh
Q 027067           86 QLNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLP---------ALELM--GLGRLAKEKARMLSMGQRKRLQLARLLA  154 (229)
Q Consensus        86 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~  154 (229)
                      +++|++|++.+|+ .|++||+.++...........+         .++.+  ++....++.+.+|||||||||+|||||+
T Consensus        89 ~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~  167 (251)
T d1jj7a_          89 QVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALI  167 (251)
T ss_dssp             HEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHT
T ss_pred             HhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccc
Confidence            8999999998875 5999999875321111111112         22222  3344556788999999999999999999


Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChhhHHhhhc
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~~~~~~~~  206 (229)
                      .+|+||||||||++||+.++..+.+.+.++.+ .++|+|+||||++.++. +|
T Consensus       168 ~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aD  219 (251)
T d1jj7a_         168 RKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-AD  219 (251)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CS
T ss_pred             cCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh-CC
Confidence            99999999999999999999999999988754 48999999999998765 44

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.2e-54  Score=360.76  Aligned_cols=189  Identities=26%  Similarity=0.424  Sum_probs=161.1

Q ss_pred             EEEEeEEEEeC--CeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067           11 LLLKNVSCMRN--AQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus        11 l~l~~l~~~~~--~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      |+++||+|+|+  ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+. ..++++++
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~lr~~i~   80 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP-NWLRRQVG   80 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH-HHHHHHEE
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccch-hhhhceEE
Confidence            78999999994  5679999999999999999999999999999999999999999999999999987654 45677899


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCCh-----------hhcCCCCCCChhHHHHHHHHHHHhcCC
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGR-----------LAKEKARMLSMGQRKRLQLARLLAIDR  157 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqkqRv~lAral~~~p  157 (229)
                      |++|++.++. .|++||+.++.... ..++..++++..++.+           .....+..|||||||||+|||||+.+|
T Consensus        81 ~v~Q~~~lf~-~Ti~eNi~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p  158 (241)
T d2pmka1          81 VVLQDNVLLN-RSIIDNISLANPGM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP  158 (241)
T ss_dssp             EECSSCCCTT-SBHHHHHCTTSTTC-CHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred             EEecccccCC-ccccccccccCccc-cHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence            9999998875 59999998753221 2233444445444432           334567899999999999999999999


Q ss_pred             CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          158 PIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       158 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +|||||||||+||+.+.+.+.+.+.++.+ ++|+|+|||+++.+..
T Consensus       159 ~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~  203 (241)
T d2pmka1         159 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLSTVKN  203 (241)
T ss_dssp             SEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGGGTT
T ss_pred             chhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHh
Confidence            99999999999999999999999998854 8999999999988755

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=2e-53  Score=360.64  Aligned_cols=194  Identities=29%  Similarity=0.417  Sum_probs=163.7

Q ss_pred             CcEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhc
Q 027067            9 PRLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQ   86 (229)
Q Consensus         9 ~~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~   86 (229)
                      ..|+++||+|+|++  .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+. ..++..
T Consensus        12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~~r~~   90 (253)
T d3b60a1          12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL-ASLRNQ   90 (253)
T ss_dssp             CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH-HHHHHT
T ss_pred             eEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhh-hhhhhe
Confidence            46999999999964  469999999999999999999999999999999999999999999999999987654 456778


Q ss_pred             ceEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhC-----------CChhhcCCCCCCChhHHHHHHHHHHHhc
Q 027067           87 LNWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMG-----------LGRLAKEKARMLSMGQRKRLQLARLLAI  155 (229)
Q Consensus        87 ~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgGqkqRv~lAral~~  155 (229)
                      ++|++|++.++.. |+.+|+.++.......++..++++..+           +.....+++.+|||||||||+|||||+.
T Consensus        91 i~~v~Q~~~l~~~-ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~  169 (253)
T d3b60a1          91 VALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR  169 (253)
T ss_dssp             EEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred             EEEEeeccccCCc-chhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence            9999999988765 999999875322222233444444443           3344556788999999999999999999


Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      +|+|||||||||+||+.++..+.+.+.++.+ ++|+|+|||+++.+.. +|
T Consensus       170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~~~~-~D  218 (253)
T d3b60a1         170 DSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLSTIEQ-AD  218 (253)
T ss_dssp             CCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGGTTT-CS
T ss_pred             CCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHh-CC
Confidence            9999999999999999999999999999864 8999999999988754 44

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=6.8e-53  Score=357.39  Aligned_cols=192  Identities=25%  Similarity=0.397  Sum_probs=164.9

Q ss_pred             cEEEEeEEEEeCC--eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcc
Q 027067           10 RLLLKNVSCMRNA--QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQL   87 (229)
Q Consensus        10 ~l~l~~l~~~~~~--~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~   87 (229)
                      .|+++||+|+|++  +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..++.++
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~-~~lr~~i   94 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT-GSLRNQI   94 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH-HHHHHTE
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCH-HHhhhee
Confidence            5999999999965  579999999999999999999999999999999999999999999999999977653 4567889


Q ss_pred             eEeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhh-----------cCCCCCCChhHHHHHHHHHHHhcC
Q 027067           88 NWLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLA-----------KEKARMLSMGQRKRLQLARLLAID  156 (229)
Q Consensus        88 ~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~  156 (229)
                      +|++|++.++. .|++||+.++... ...++..++++.+++.++.           ...+.+||||||||++|||||+++
T Consensus        95 ~~v~Q~~~lf~-~Ti~eNi~~g~~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~  172 (255)
T d2hyda1          95 GLVQQDNILFS-DTVKENILLGRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN  172 (255)
T ss_dssp             EEECSSCCCCS-SBHHHHHGGGCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred             eeeeccccCCC-CCHHHHHhccCcC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence            99999998875 5999999876321 1234566777777765433           234568999999999999999999


Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhc
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMN  206 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~  206 (229)
                      |+|||||||||+||+.++..+.+.+..+.+ ++|+|+|||+++.+.. +|
T Consensus       173 p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~~~~-~D  220 (255)
T d2hyda1         173 PPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITH-AD  220 (255)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGGTTT-CS
T ss_pred             CCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHh-CC
Confidence            999999999999999999999999988764 7899999999988754 44

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.6e-51  Score=337.88  Aligned_cols=182  Identities=31%  Similarity=0.447  Sum_probs=156.6

Q ss_pred             cEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceE
Q 027067           10 RLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNW   89 (229)
Q Consensus        10 ~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~   89 (229)
                      .|+++||++.|+ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++..      .+.+++|
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~------~~~~i~~   74 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK------VKGKIFF   74 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG------GGGGEEE
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH------hcCcEEE
Confidence            589999999995 579999999999999999999999999999999999999999999999999853      3457899


Q ss_pred             eecccccCCCCCHHHhHHHHHHhcCc---cccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCC
Q 027067           90 LSLKDAVKEKFTVLDNVQWFEVLEGK---QGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPS  166 (229)
Q Consensus        90 ~~~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt  166 (229)
                      ++|+..++..+|+.+++.+....++.   ..++.++++.+++.+ .++++.+|||||||||+|||||+.+|+++||||||
T Consensus        75 ~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt  153 (200)
T d1sgwa_          75 LPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV  153 (200)
T ss_dssp             ECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred             EeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            99999899999999999877655432   234566788888765 45778999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCChh
Q 027067          167 VALDYDGVRLLEYIIAEHRK-KGGIVIVATHLPI  199 (229)
Q Consensus       167 ~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~  199 (229)
                      +|||+.+++.+.+.+.++.+ .+.+||.++|+++
T Consensus       154 ~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l~  187 (200)
T d1sgwa_         154 VAIDEDSKHKVLKSILEILKEKGIVIISSREELS  187 (200)
T ss_dssp             TTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCEEEEEEechhh
Confidence            99999999999888888654 4556666666553

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5e-51  Score=341.77  Aligned_cols=195  Identities=21%  Similarity=0.256  Sum_probs=167.9

Q ss_pred             CcEEEEeEEEEeCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcce
Q 027067            9 PRLLLKNVSCMRNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLN   88 (229)
Q Consensus         9 ~~l~l~~l~~~~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~   88 (229)
                      .+|+++||+++|    +|++|||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++..... .......+
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~-~~~~~~~~   75 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSA-TKLALHRA   75 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCH-HHHHHHEE
T ss_pred             eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCH-HHHHhhce
Confidence            368999998654    699999999999999999999999999999999976 689999999999866543 23445678


Q ss_pred             EeecccccCCCCCHHHhHHHHHHhcCccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhc-------CCCeEE
Q 027067           89 WLSLKDAVKEKFTVLDNVQWFEVLEGKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAI-------DRPIWL  161 (229)
Q Consensus        89 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~-------~p~ill  161 (229)
                      |++++.......++.+++.+........+...++++.+++.+..++++.+|||||||||+|||||++       +|++||
T Consensus        76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll  155 (231)
T d1l7vc_          76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL  155 (231)
T ss_dssp             EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred             eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE
Confidence            9988877767778988887643322223446678889999999999999999999999999999997       779999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhhccCC
Q 027067          162 LDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAMNLRL  209 (229)
Q Consensus       162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~~~~~  209 (229)
                      |||||+|||+.++..+.+++++++++|.|||++|||++++.+.+|--+
T Consensus       156 lDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~  203 (231)
T d1l7vc_         156 LDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAW  203 (231)
T ss_dssp             ESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCC
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEE
Confidence            999999999999999999999999999999999999999999987433

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.8e-46  Score=320.92  Aligned_cols=167  Identities=24%  Similarity=0.280  Sum_probs=135.7

Q ss_pred             eCCeeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecccccCCC
Q 027067           20 RNAQQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLKDAVKEK   99 (229)
Q Consensus        20 ~~~~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
                      |.++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|              +++|++|++.+++.
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~~  111 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------------RVSFCSQFSWIMPG  111 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--------------CEEEECSSCCCCSE
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--------------EEEEEeccccccCc
Confidence            4778999999999999999999999999999999999999999999999987              37899999888775


Q ss_pred             CCHHHhHHHHHHhcCccccHHHHHHHhCCC-----------hhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 027067          100 FTVLDNVQWFEVLEGKQGNSLPALELMGLG-----------RLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVA  168 (229)
Q Consensus       100 ~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~  168 (229)
                       |++||+.++...  .......+++.+++.           ....+.+.+|||||||||+|||||+.+|+||||||||++
T Consensus       112 -tv~eni~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~  188 (281)
T d1r0wa_         112 -TIKENIIFGVSY--DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY  188 (281)
T ss_dssp             -EHHHHHTTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred             -eeeccccccccc--cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence             999999765321  112223333333321           123456778999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          169 LDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       169 LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ||+.+++.+.+.+......++|+|+|||+++.+..
T Consensus       189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~  223 (281)
T d1r0wa_         189 LDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRK  223 (281)
T ss_dssp             SCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHh
Confidence            99999887776533333458899999999987754

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.78  E-value=2.3e-20  Score=146.44  Aligned_cols=136  Identities=9%  Similarity=0.022  Sum_probs=82.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEeCCCCchhhhhhhcceEeecc----cccCCCCCHHHhHHHHHHhc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHDITQSGIFHQYKLQLNWLSLK----DAVKEKFTVLDNVQWFEVLE  113 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~tv~e~l~~~~~~~  113 (229)
                      .++|+||||||||||+++|+|.++|+.|.+++.+.+.....      .+.++....    ..............    ..
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   71 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETK------KRTGFRIITTEGKKKIFSSKFFTSKKL----VG   71 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------------CCEEEEEETTCCEEEEEETTCCCSSE----ET
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHH------HhhhhhhhhhhHHHHHHhhhhhhhhhh----hh
Confidence            37999999999999999999999999999999876643321      111211100    00000000000000    00


Q ss_pred             CccccHHHHHHHhCCChhhcCCCCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEE
Q 027067          114 GKQGNSLPALELMGLGRLAKEKARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIV  193 (229)
Q Consensus       114 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~  193 (229)
                      +           .+.    +....++|+|+++|.++++++..+|+++++|||....+. ..+....+.+.++..+.++|+
T Consensus        72 ~-----------~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~-~~~~~~~l~~~l~~~~~~il~  135 (178)
T d1ye8a1          72 S-----------YGV----NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF-SKKFRDLVRQIMHDPNVNVVA  135 (178)
T ss_dssp             T-----------EEE----CHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG-CHHHHHHHHHHHTCTTSEEEE
T ss_pred             h-----------hhc----CcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh-hHHHHHHHHHHhccCCCEEEE
Confidence            0           000    111235889999999999999999999999998544332 222333333334555789999


Q ss_pred             EeCChh
Q 027067          194 ATHLPI  199 (229)
Q Consensus       194 vtH~~~  199 (229)
                      ++|+..
T Consensus       136 ~~h~~~  141 (178)
T d1ye8a1         136 TIPIRD  141 (178)
T ss_dssp             ECCSSC
T ss_pred             EEccHH
Confidence            999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=1.2e-12  Score=110.12  Aligned_cols=68  Identities=31%  Similarity=0.367  Sum_probs=57.4

Q ss_pred             CCCCCChhHHHHHHHHHH----HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          135 KARMLSMGQRKRLQLARL----LAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAra----l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      ....+|+|||+...++..    ....+.++++|||-++|+|.....+.+.+++..+ +.-||++||.+..++.
T Consensus       216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~~~~~  287 (308)
T d1e69a_         216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKIVMEA  287 (308)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTTGGGG
T ss_pred             hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHh
Confidence            456899999998877665    3456799999999999999999999999988754 5789999999987754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=4.3e-11  Score=103.97  Aligned_cols=70  Identities=29%  Similarity=0.337  Sum_probs=58.4

Q ss_pred             CCCCCChhHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          135 KARMLSMGQRKRLQLARLL----AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       135 ~~~~LSgGqkqRv~lAral----~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ....||||||.++++|..+    ..++++++||||+++||+..+..+.++|.++...+.-+|++||++..++.+
T Consensus       329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~a  402 (427)
T d1w1wa_         329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKS  402 (427)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTC
T ss_pred             hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhc
Confidence            3467899999998877554    457889999999999999999999999988765566799999999766554

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.87  E-value=1.8e-08  Score=81.66  Aligned_cols=49  Identities=18%  Similarity=0.140  Sum_probs=38.7

Q ss_pred             HhcCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhCCcEEEEEeCChhhH
Q 027067          153 LAIDRPIWLLDEPSVALDYDG-VRLLEYIIAEHRKKGGIVIVATHLPIQI  201 (229)
Q Consensus       153 l~~~p~illlDEPt~~LD~~~-~~~l~~~l~~~~~~g~tii~vtH~~~~~  201 (229)
                      -+.+..++|+||+..|=|+.. ......+++.+.+.+..++++||..+..
T Consensus       111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~  160 (224)
T d1ewqa2         111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELT  160 (224)
T ss_dssp             HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHH
T ss_pred             cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhh
Confidence            345667999999999999975 4566667777777788999999986543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=6.3e-08  Score=78.91  Aligned_cols=49  Identities=18%  Similarity=0.068  Sum_probs=35.8

Q ss_pred             hcCCCeEEEeCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEeCChhhHH
Q 027067          154 AIDRPIWLLDEPSVALDYDGVR-LLEYIIAEHRKK-GGIVIVATHLPIQIE  202 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~-~l~~~l~~~~~~-g~tii~vtH~~~~~~  202 (229)
                      +.+..++|+||+..|=++.... ....++..+..+ +..+|++||..+...
T Consensus       118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~  168 (234)
T d1wb9a2         118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  168 (234)
T ss_dssp             CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhh
Confidence            4556699999999999997554 455667666544 567899999765444

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=4.3e-08  Score=75.33  Aligned_cols=34  Identities=24%  Similarity=0.284  Sum_probs=29.0

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+++.++++.+| +++|+|||||||||+|.+|.-.
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~   47 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA   47 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence            456788888775 9999999999999999999643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4e-05  Score=62.05  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      -+|+++.|.|+.|+|||||+--|+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHH
Confidence            469999999999999999986654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.3e-06  Score=64.16  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999986543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=3.4e-06  Score=67.96  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=26.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      +|++.+++|+||+|||||+|.|.|-.....|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence            58999999999999999999999977766777753

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=2.9e-06  Score=65.38  Aligned_cols=26  Identities=38%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      |.+++|+||||||||||++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            89999999999999999999987654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=9.2e-07  Score=66.84  Aligned_cols=34  Identities=26%  Similarity=0.270  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN   70 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~   70 (229)
                      ..+.|+||+|+|||||++.++..+....+.+.+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~   35 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF   35 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            3588999999999999999999987665555443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.83  E-value=4.9e-06  Score=62.64  Aligned_cols=27  Identities=44%  Similarity=0.666  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .|+++.|.||+||||||+.+.|+..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999998653

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.82  E-value=9.8e-06  Score=66.09  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=27.6

Q ss_pred             eeeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           23 QQILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        23 ~~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      .+-|+.+..-+.+|+++.|.|++|+|||||+.-++
T Consensus        22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             chhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            34455544447899999999999999999987665

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.78  E-value=6.3e-06  Score=70.48  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=23.7

Q ss_pred             eEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           30 NISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        30 sl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ++++..+.+.+|+|||||||||+|.+|+
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence            3455656799999999999999999984

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=6e-06  Score=62.01  Aligned_cols=27  Identities=41%  Similarity=0.465  Sum_probs=24.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998755

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.76  E-value=4.3e-05  Score=60.64  Aligned_cols=26  Identities=19%  Similarity=0.463  Sum_probs=22.7

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      +++|.++.|.|++|||||||+.-++-
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            78999999999999999999855543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.71  E-value=4.1e-06  Score=63.42  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      .+++|+|++|||||||++-|...++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999888766553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=3.4e-06  Score=68.15  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      +|++.+++|+||+|||||+|.|.|-.....|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence            58899999999999999999999987666777753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.69  E-value=9.5e-06  Score=60.86  Aligned_cols=27  Identities=33%  Similarity=0.347  Sum_probs=23.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+|-++.|+|++||||||+.+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999998544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=1e-05  Score=60.88  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.++|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999865

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.5e-05  Score=63.05  Aligned_cols=26  Identities=23%  Similarity=0.508  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|.++.|+||||||||||.+.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999886543

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=0.00011  Score=59.51  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -+.+.||.|+|||+|.++|+...
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            47899999999999999999753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.60  E-value=1.8e-05  Score=59.13  Aligned_cols=27  Identities=26%  Similarity=0.428  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ..+++.|.|++||||||+.+.|+..+.
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.55  E-value=1.8e-05  Score=60.45  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++||.|++|||||||.+.|.-.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            689999999999999999986544

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.55  E-value=2.2e-05  Score=58.84  Aligned_cols=27  Identities=33%  Similarity=0.556  Sum_probs=23.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|-.++|+||+||||||+.+.|+--+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.55  E-value=2.2e-05  Score=59.13  Aligned_cols=28  Identities=21%  Similarity=0.306  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPS   63 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~   63 (229)
                      ..+++|.|+.||||||+.+.|+-.+...
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3689999999999999999998665443

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.54  E-value=2.1e-05  Score=57.86  Aligned_cols=31  Identities=32%  Similarity=0.378  Sum_probs=23.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN   70 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~   70 (229)
                      +++.|.|++|||||||.+.|..-   ..|.+.++
T Consensus         3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~   33 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN   33 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh---CCCCEEec
Confidence            57889999999999999977432   23555554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00019  Score=58.44  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +....-+.+.||.|||||++.+.|+..+
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHc
Confidence            3344568899999999999999999765

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.3e-05  Score=57.52  Aligned_cols=23  Identities=43%  Similarity=0.498  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998765

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.50  E-value=0.0001  Score=57.41  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=30.5

Q ss_pred             cCCCeEEEeCCCCCCC----HH-HHHHHHHHHHHHHhCCcEEEEEeCChh
Q 027067          155 IDRPIWLLDEPSVALD----YD-GVRLLEYIIAEHRKKGGIVIVATHLPI  199 (229)
Q Consensus       155 ~~p~illlDEPt~~LD----~~-~~~~l~~~l~~~~~~g~tii~vtH~~~  199 (229)
                      .+|+++++|=-++-.+    .. ..+.+..++...++.+.|+++++|...
T Consensus       124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (242)
T d1tf7a1         124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE  173 (242)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSS
T ss_pred             hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccc
Confidence            3799999996654332    22 334555666667777999999988543

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.48  E-value=2.8e-05  Score=57.74  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      .++.|.||+||||||+.+.|+..+.   +.+.+++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence            4789999999999999999997653   3454444

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=0.00013  Score=59.53  Aligned_cols=29  Identities=17%  Similarity=0.387  Sum_probs=24.1

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +....-+.|.||+|+|||+|.+++++...
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            34455688999999999999999998763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.44  E-value=3e-05  Score=57.79  Aligned_cols=22  Identities=45%  Similarity=0.610  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+||.||||||+.+.|+--
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3679999999999999999753

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=2.3e-05  Score=59.81  Aligned_cols=26  Identities=35%  Similarity=0.515  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|-++.|+|++||||||+.+.|+-.+
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999998644

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=8.1e-05  Score=56.59  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+||+|..|+|||||++.|+|-.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999999853

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.34  E-value=4.5e-05  Score=58.75  Aligned_cols=23  Identities=30%  Similarity=0.536  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.|.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHhcCCC
Confidence            49999999999999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.33  E-value=5.2e-05  Score=59.83  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|+|+.|||||||++.|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            6899999999999999999743

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.3e-05  Score=59.21  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++||.|++|||||||.+.|+-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l   26 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLL   26 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999987655

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=5.6e-05  Score=58.22  Aligned_cols=22  Identities=41%  Similarity=0.673  Sum_probs=19.4

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999987654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00082  Score=54.74  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=30.4

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHC-CCCCCccEEEEcCEe
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAG-FSKPSAGEILWNGHD   73 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~G-l~~p~~G~I~~~g~~   73 (229)
                      -+++|.++-|.||+|||||||+-.++. ..++..--++++.+.
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~   92 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH   92 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence            467899999999999999999855444 344443446666554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.26  E-value=7.8e-05  Score=56.12  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.|+|-.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999854

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=8.7e-05  Score=57.00  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ..+.|+||||+|||||++.|...
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999988753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.23  E-value=7.8e-05  Score=57.29  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +..+++|+||.||||||+.+.|+--
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3468999999999999999999853

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00011  Score=55.99  Aligned_cols=27  Identities=26%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +.+|+++.|.||+|||||||+.-++.-
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence            789999999999999999998766643

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00012  Score=58.08  Aligned_cols=46  Identities=15%  Similarity=0.081  Sum_probs=32.3

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIED  203 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~  203 (229)
                      +..++++||.-. |.......+.+.+.+.. .+..+|++|++++.+..
T Consensus       131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~i~~  176 (252)
T d1sxje2         131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSPIIA  176 (252)
T ss_dssp             CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCSSCH
T ss_pred             CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccchhh
Confidence            456999999854 77777777777776542 34568999998764433

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.8e-05  Score=57.69  Aligned_cols=21  Identities=48%  Similarity=0.708  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|+||+|||||||.+.|+-.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            679999999999999988653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.21  E-value=7.1e-05  Score=56.66  Aligned_cols=23  Identities=30%  Similarity=0.574  Sum_probs=20.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.|.|-.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.19  E-value=8.9e-05  Score=55.88  Aligned_cols=25  Identities=32%  Similarity=0.380  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +++.|.|++||||||+.+.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999987764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00011  Score=55.36  Aligned_cols=22  Identities=36%  Similarity=0.523  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +++|+|..|+|||||++.|.|-
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999999984

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.16  E-value=0.00011  Score=55.67  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|+|..|+|||||++.|+|-.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999863

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.15  E-value=7.5e-05  Score=55.99  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|++|||||||++.+.+-.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68899999999999999998864

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.15  E-value=5.8e-05  Score=57.55  Aligned_cols=21  Identities=33%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +||+|+.++|||||++.|+|-
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.12  E-value=0.00011  Score=55.08  Aligned_cols=22  Identities=50%  Similarity=0.555  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|+|+.||||||+.+.|+-.+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6788999999999999998765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00011  Score=53.68  Aligned_cols=22  Identities=36%  Similarity=0.596  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|++|+|||||++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999975

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.10  E-value=9.5e-05  Score=62.30  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      .|.-+.|.|+.|||||||+++|++.++|+.=-|++
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti  199 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI  199 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence            34458999999999999999999999886655555

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.10  E-value=9.6e-05  Score=56.96  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.++.++.|+||.||||||+.+.|+--+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3567899999999999999999998743

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.09  E-value=0.001  Score=54.26  Aligned_cols=41  Identities=17%  Similarity=0.295  Sum_probs=29.7

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCcc-EEEEcCE
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAG-EILWNGH   72 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G-~I~~~g~   72 (229)
                      -++.|.++-|.||+|||||||.-.++....-..| -+++|.+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            4678999999999999999999777665432223 3455443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.09  E-value=0.00012  Score=55.31  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.|+|++||||||+.+.|+-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            46689999999999999997543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.08  E-value=0.00011  Score=54.15  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|+|..|||||||++.+.+-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00012  Score=56.38  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.|.|-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.06  E-value=0.00013  Score=53.46  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.+++-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999987643

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00015  Score=55.81  Aligned_cols=26  Identities=23%  Similarity=0.233  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +-.++.|+||.||||||+.+.|+--+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34579999999999999999998755

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.04  E-value=0.0001  Score=55.90  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +||+|..++|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999864

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00019  Score=53.07  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=21.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|+|||||++.|+|.-
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00017  Score=55.27  Aligned_cols=21  Identities=43%  Similarity=0.580  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++||+|+.||||||+.+.|.-
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999863

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00018  Score=53.93  Aligned_cols=22  Identities=55%  Similarity=0.522  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|+|+.||||||+.+.|+-.+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.98  E-value=0.00014  Score=55.60  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.|+||.||||||+.+.|+--+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999997543

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00022  Score=54.61  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++.|+||.||||||..+.|+--
T Consensus         3 iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.93  E-value=0.00016  Score=57.79  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      ....+.+.||.|||||||.+.|++.+..  +-+.++.
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~   65 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN   65 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence            3456889999999999999999997753  3444544

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.00024  Score=54.07  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ++-+++.++|+.||||||+.+-++
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            455799999999999999998874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.91  E-value=0.00016  Score=55.48  Aligned_cols=25  Identities=28%  Similarity=0.550  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .=+++|-|+.||||||+++.|+..+
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            3489999999999999999998765

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.00025  Score=53.42  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.3

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|+||.||||||+.+.|+--+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            6799999999999999996543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.90  E-value=0.00029  Score=53.81  Aligned_cols=25  Identities=40%  Similarity=0.433  Sum_probs=21.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|=.++|+||.||||||..+.|+-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHH
Confidence            3567788999999999999999993

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00027  Score=55.04  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +|.+++|-|+-||||||+++.|+..+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999998654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.89  E-value=0.00022  Score=56.29  Aligned_cols=26  Identities=31%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.+++++||+|+||||.+==|+-.+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999864444433

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.89  E-value=0.00035  Score=51.86  Aligned_cols=23  Identities=30%  Similarity=0.590  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.|||||||++.+.|-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999999864

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.86  E-value=0.00027  Score=55.02  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|-||.||||||..+.|+--+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57888999999999999998654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.00028  Score=54.12  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -+++++|..|||||||.+.|+..+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998644

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.86  E-value=0.0003  Score=55.31  Aligned_cols=41  Identities=29%  Similarity=0.296  Sum_probs=29.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEEcCEeC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKP--SAGEILWNGHDI   74 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~   74 (229)
                      ++|-++-|+|.+||||||+.+.|.-.+..  ..-.+.++|..+
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            57889999999999999999998743311  112466777554

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00017  Score=56.79  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++.+++|-|+-||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467999999999999999999998764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00012  Score=54.95  Aligned_cols=23  Identities=26%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|+.++|||||+|.|.|..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            59999999999999999998864

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.0003  Score=54.40  Aligned_cols=30  Identities=27%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC---CCCccEE
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS---KPSAGEI   67 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~---~p~~G~I   67 (229)
                      +++|.||.||||||+-+.|+--+   ..++|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            89999999999999999998544   3344544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.83  E-value=0.0026  Score=51.81  Aligned_cols=42  Identities=17%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccE-EEEcCEe
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGE-ILWNGHD   73 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~-I~~~g~~   73 (229)
                      -++.|.++-|.||+|||||||+-.++....-..|. |++|.+.
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            57889999999999999999975554433223344 4555544

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.0003  Score=54.79  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++||+|+.||||||+.+++.-
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999853

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00033  Score=54.97  Aligned_cols=28  Identities=36%  Similarity=0.411  Sum_probs=24.3

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++|-+++|-|+-||||||+.+.|..-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999877543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.80  E-value=0.00033  Score=52.34  Aligned_cols=23  Identities=22%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|||||||++.|.+-.
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999999853

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.79  E-value=0.00028  Score=57.13  Aligned_cols=23  Identities=26%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|..|+|||||+|.|.|-.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            48899999999999999999964

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.78  E-value=0.00036  Score=52.91  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999998654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00022  Score=59.69  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++||.|++||||||+.+.|..++.
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHh
Confidence            899999999999999999987764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.71  E-value=0.0053  Score=52.62  Aligned_cols=45  Identities=16%  Similarity=0.247  Sum_probs=31.9

Q ss_pred             HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          147 LQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       147 v~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      -++..+|=++|++++..|-..   .++...   .+ +....|+.|+-+-|--
T Consensus       218 ~~l~~~lR~dPDvi~igEiRd---~~ta~~---a~-~aa~tGhlV~tTlHa~  262 (401)
T d1p9ra_         218 RGLRAILRQDPDVVMVGEIRD---LETAQI---AV-QASLTGHLVMSTLHTN  262 (401)
T ss_dssp             HHHHHHGGGCCSEEEESCCCS---HHHHHH---HH-HHHHTTCEEEEEECCS
T ss_pred             HHHHHHHhhcCCEEEecCcCC---hHHHHH---HH-HHHhcCCeEEEEeccC
Confidence            346677788999999999864   333322   23 4456799999999963

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00043  Score=54.39  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      +|.+++|-|+-||||||+.+.|+--+.. .|.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~   33 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL   33 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence            6999999999999999999999877653 4543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.71  E-value=0.00039  Score=54.67  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.|.||+|+||||++++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999998754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00048  Score=53.73  Aligned_cols=26  Identities=31%  Similarity=0.358  Sum_probs=23.3

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      +++|+++.|.||.|||||||..-++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999976653

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0005  Score=54.52  Aligned_cols=25  Identities=32%  Similarity=0.325  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ..+.|.||+|+||||++++++....
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999998654

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00044  Score=52.24  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+.|+||.||||||..+.|+--
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.00051  Score=51.92  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.|+||.||||||+.+.|+--+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36899999999999999997543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.65  E-value=0.00011  Score=54.40  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|..|+|||||++.|+|-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.65  E-value=0.00049  Score=54.47  Aligned_cols=25  Identities=16%  Similarity=0.251  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+.++.|.||.|+|||||++.++--
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence            5678999999999999999987643

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.62  E-value=0.00048  Score=54.01  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7899999999999999998753

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00046  Score=53.27  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -++|+|+.|||||||++.+.+-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5799999999999999999864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.60  E-value=0.00044  Score=51.44  Aligned_cols=22  Identities=41%  Similarity=0.563  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3679999999999999977653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.0003  Score=55.69  Aligned_cols=24  Identities=33%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      .+..+++++||+|+||||.+==|+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345689999999999998763333

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00058  Score=53.26  Aligned_cols=21  Identities=48%  Similarity=0.582  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++||+|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            789999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.0005  Score=57.82  Aligned_cols=26  Identities=42%  Similarity=0.528  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.-++||+||.|||||||++.+...+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999997543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.59  E-value=0.00053  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +||+|.-.||||||++.|.|..
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999999854

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00067  Score=51.36  Aligned_cols=22  Identities=36%  Similarity=0.427  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .+.|+||.||||||+.+.|+--
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999999999999864

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0012  Score=49.17  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999987775

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.00035  Score=55.22  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -.+++++||+|+||||.+-=|+-.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999998774444333

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.00077  Score=58.04  Aligned_cols=22  Identities=45%  Similarity=0.854  Sum_probs=20.7

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|+|..|+|||||+|.|.|..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999964

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00069  Score=53.35  Aligned_cols=28  Identities=25%  Similarity=0.421  Sum_probs=23.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      .+.+.||.|+||||+.++++..+....+
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~   64 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQTNIH   64 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence            4789999999999999999987765543

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.46  E-value=0.0008  Score=51.70  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+||.||||||+.+.|+--+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998643

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.00061  Score=50.96  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|+.|+|||||++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998764

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.45  E-value=0.0009  Score=51.99  Aligned_cols=25  Identities=20%  Similarity=0.375  Sum_probs=22.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      +.+|+++.|.|++|+|||||.--++
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999985554

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.45  E-value=0.00033  Score=57.99  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++||.|++||||||+.+.|...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999877654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.0007  Score=50.63  Aligned_cols=20  Identities=20%  Similarity=0.609  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|+.|+|||||++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999998775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.45  E-value=0.00062  Score=50.94  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999774

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00085  Score=52.62  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      |.+|.++.|.||+|||||||.-.++
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHH
Confidence            7899999999999999999987765

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.40  E-value=0.001  Score=52.29  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRML   56 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i   56 (229)
                      +++|+++.|.||.|||||||.--+
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~   56 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTL   56 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHH
Confidence            789999999999999999998533

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.38  E-value=0.00093  Score=51.30  Aligned_cols=23  Identities=30%  Similarity=0.615  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999998654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.00075  Score=50.74  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|+.|+|||||++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987655

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.0011  Score=49.32  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3799999999999999887753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.35  E-value=0.00065  Score=53.63  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=14.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHH
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ...+++++||+|+||||.+==|+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999864444

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.30  E-value=0.0024  Score=48.86  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=26.8

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ..++...+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            3466666677 68899999999999999987665

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.30  E-value=0.0029  Score=48.36  Aligned_cols=33  Identities=30%  Similarity=0.405  Sum_probs=25.8

Q ss_pred             eeeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           24 QILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        24 ~iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      ..++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         3 ~~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           3 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            4566666655 57889999999999999986654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.0012  Score=49.61  Aligned_cols=29  Identities=24%  Similarity=0.235  Sum_probs=25.5

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|.++++.|+=|||||||.|.++.-+-
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            46899999999999999999999886553

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.29  E-value=0.0011  Score=52.05  Aligned_cols=26  Identities=38%  Similarity=0.446  Sum_probs=20.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ...++.++||+|+||||.+-=|+-.+
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999998875555443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0013  Score=49.79  Aligned_cols=21  Identities=38%  Similarity=0.561  Sum_probs=19.0

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|+|+.|+|||||++.+.+-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999988764

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.0009  Score=52.73  Aligned_cols=24  Identities=33%  Similarity=0.426  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      -+.+.||.|+||||+.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.26  E-value=0.001  Score=55.14  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNG   71 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g   71 (229)
                      ++.-+.++||.|||||+|.|+|+.....  --+.+++
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~   82 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA   82 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence            3455678999999999999999987531  2344544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0013  Score=49.00  Aligned_cols=22  Identities=36%  Similarity=0.730  Sum_probs=19.7

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++|+|..|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999998864

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.001  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=18.2

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|+|+.|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            789999999999999876643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0015  Score=48.43  Aligned_cols=20  Identities=25%  Similarity=0.536  Sum_probs=17.7

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|+.|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986664

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.19  E-value=0.0012  Score=52.10  Aligned_cols=29  Identities=31%  Similarity=0.359  Sum_probs=24.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAG   65 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G   65 (229)
                      ..+.|.||.|+||||+++.++..++...+
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~   72 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKDKTT   72 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence            58899999999999999999987754433

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.0013  Score=48.74  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=18.5

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++++|.+|+|||||++.+++-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999977654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.001  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.480  Sum_probs=18.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++-+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999987654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.18  E-value=0.0011  Score=52.26  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -++||+|...||||||++.|.+-
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            36999999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.001  Score=49.45  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|+.|+|||||++.+.+
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0013  Score=51.29  Aligned_cols=46  Identities=15%  Similarity=0.147  Sum_probs=28.3

Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .+++++||.- .+....+..+...+... .....+++++++.+.+...
T Consensus       102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~i~~~  147 (224)
T d1sxjb2         102 HKIVILDEAD-SMTAGAQQALRRTMELY-SNSTRFAFACNQSNKIIEP  147 (224)
T ss_dssp             CEEEEEESGG-GSCHHHHHTTHHHHHHT-TTTEEEEEEESCGGGSCHH
T ss_pred             eEEEEEeccc-ccchhHHHHHhhhcccc-ccceeeeeccCchhhhhhH
Confidence            5689999854 44445555555555443 2355677888887665443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0021  Score=48.05  Aligned_cols=22  Identities=45%  Similarity=0.764  Sum_probs=20.0

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++++|..|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7899999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.12  E-value=0.0015  Score=54.75  Aligned_cols=25  Identities=32%  Similarity=0.417  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +.-++||+||-|||||||+..+...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.11  E-value=0.00082  Score=50.71  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=19.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+.+-
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4779999999999999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0019  Score=48.25  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=17.4

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|+.|+|||||++-+.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999976654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.09  E-value=0.0014  Score=49.49  Aligned_cols=20  Identities=20%  Similarity=0.615  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|..|+|||||++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0013  Score=49.11  Aligned_cols=20  Identities=35%  Similarity=0.687  Sum_probs=18.4

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|..|+|||||++.+.+
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998875

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0015  Score=48.41  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=19.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|..|+|||||++-+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0031  Score=47.54  Aligned_cols=22  Identities=27%  Similarity=0.302  Sum_probs=18.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|..|+|||||++.+.+-
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999866653

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.01  E-value=0.0018  Score=53.32  Aligned_cols=22  Identities=27%  Similarity=0.354  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++||-|+.|||||||.+.|.-.
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~   50 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNH   50 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            8899999999999999877533

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0016  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=18.3

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|+|..|+|||||++.+.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877643

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.002  Score=47.53  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999998875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0036  Score=46.45  Aligned_cols=20  Identities=30%  Similarity=0.481  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|+.|+|||||++-+.+
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999988774

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0014  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4689999999999999877653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.0016  Score=48.05  Aligned_cols=20  Identities=15%  Similarity=0.418  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|..|+|||||++-+.+
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0022  Score=47.61  Aligned_cols=20  Identities=30%  Similarity=0.542  Sum_probs=18.0

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|..|+|||||++-+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999988764

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.96  E-value=0.0018  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -+.+.||.|||||+|.++|+..
T Consensus        42 ~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          42 SVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhhc
Confidence            4779999999999999999864

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0019  Score=53.16  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=27.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +.|-+|+..+|+|++|+|||||+..|+.-.
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999999888644

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0018  Score=48.01  Aligned_cols=20  Identities=25%  Similarity=0.405  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|..|+|||||++.+.+
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999997764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0018  Score=50.37  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      .+++++||- ..+.......+...+.+.. ....++++|++...+...
T Consensus       100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~-~~~~~~~~~~~~~~i~~~  145 (227)
T d1sxjc2         100 FKLIILDEA-DAMTNAAQNALRRVIERYT-KNTRFCVLANYAHKLTPA  145 (227)
T ss_dssp             CEEEEETTG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGGGSCHH
T ss_pred             eEEEEEecc-ccchhhHHHHHHHHhhhcc-cceeeccccCcHHHhHHH
Confidence            468999995 4566677777777776643 245677778776655443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0019  Score=48.50  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=18.8

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0017  Score=49.64  Aligned_cols=20  Identities=40%  Similarity=0.660  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999997664

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.84  E-value=0.0013  Score=49.15  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .+.++|++|+|||||++.+.+-..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~~~   37 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLGQS   37 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            477999999999999999876543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0041  Score=46.26  Aligned_cols=20  Identities=35%  Similarity=0.507  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|..|+|||||++-+.+
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67899999999999997764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.76  E-value=0.0027  Score=49.88  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++||+|+-||||||..+.|..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999954

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.002  Score=48.19  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=18.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++-+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987664

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.73  E-value=0.0025  Score=47.34  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=17.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999986554

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0015  Score=48.88  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=17.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      .++++|+.|+|||||++.+++-
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC--
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999877553

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0021  Score=47.91  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.1

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|..|+|||||++.+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999998764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0026  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++.+.+
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999977664

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.67  E-value=0.0063  Score=45.14  Aligned_cols=21  Identities=24%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++|+|..|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0017  Score=48.51  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=8.5

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++|+|..|+|||||++.+++-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0035  Score=46.53  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            468999999999999988773

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.61  E-value=0.0063  Score=46.06  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=24.3

Q ss_pred             eeeeeeEEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           25 ILRHVNISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        25 iL~~vsl~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      .++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus         5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            455555554 58899999999999999885543

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0027  Score=51.87  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -+++|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            489999999999999999999864

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.57  E-value=0.002  Score=51.07  Aligned_cols=23  Identities=22%  Similarity=0.213  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45567999999999999998764

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.57  E-value=0.0031  Score=49.31  Aligned_cols=28  Identities=32%  Similarity=0.449  Sum_probs=22.3

Q ss_pred             EEEEEcCCCccHHHHHHHH-HCCCCCCcc
Q 027067           38 ALVLTGTNGSGKSTFLRML-AGFSKPSAG   65 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i-~Gl~~p~~G   65 (229)
                      .+.|+|.+|+|||||++-+ .+-..|+-|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence            4789999999999999765 455567766

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0033  Score=49.24  Aligned_cols=25  Identities=32%  Similarity=0.474  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      ++++|=|+-||||||+++.|+-.+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHh
Confidence            5889999999999999999987553

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.56  E-value=0.0032  Score=47.17  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=24.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      .+.++|..|+|||||++-+..-.-|+.|..
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            368999999999999988876666777744

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0029  Score=46.99  Aligned_cols=20  Identities=30%  Similarity=0.589  Sum_probs=17.6

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|+.|+|||||++.+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999986543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0038  Score=47.13  Aligned_cols=28  Identities=39%  Similarity=0.688  Sum_probs=22.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC--CCCCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF--SKPSAG   65 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl--~~p~~G   65 (229)
                      .+.|+|.+|+|||||++-+.-.  ..||-|
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence            4689999999999999887422  457778

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.49  E-value=0.0035  Score=50.34  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      -+-+.||.|+|||+|.++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eeEEecCCCCCchHHHHHHHHHh
Confidence            37899999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0033  Score=46.54  Aligned_cols=20  Identities=35%  Similarity=0.557  Sum_probs=17.6

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++++|..|+|||||++-+.+
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999987654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0041  Score=46.99  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=17.6

Q ss_pred             EEEEcCCCccHHHHHHHHHC
Q 027067           39 LVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ++|+|..|+|||||++.+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            89999999999999977553

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.43  E-value=0.0016  Score=54.17  Aligned_cols=26  Identities=38%  Similarity=0.629  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKP   62 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p   62 (229)
                      .-+.|+||-|+|||||+|.++++++|
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp~   54 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLPE   54 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCCC
Confidence            45789999999999999999999876

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.40  E-value=0.0037  Score=51.14  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=21.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|.-.||||||+++|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999975

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.39  E-value=0.0036  Score=50.90  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .++|+|.-.||||||+++|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.37  E-value=0.0053  Score=46.84  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEcCCCccHHHHHHHHHCCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999864

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.0045  Score=46.60  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=17.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++++|..|+|||||++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999965543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.004  Score=47.23  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=17.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      .++++|+.|+|||||++.+.+
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999976543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.16  E-value=0.0036  Score=54.54  Aligned_cols=24  Identities=29%  Similarity=0.591  Sum_probs=21.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      =+.++||+|||||-|.|.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0072  Score=50.00  Aligned_cols=32  Identities=19%  Similarity=0.360  Sum_probs=25.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEc
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWN   70 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~   70 (229)
                      ..+.++||+|+|||.|.+.|+-.+.  .--|.++
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d   84 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG--IELLRFD   84 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence            3688999999999999999998763  2244454

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.73  E-value=0.0076  Score=49.50  Aligned_cols=59  Identities=14%  Similarity=0.074  Sum_probs=35.5

Q ss_pred             CCCCChhHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCh
Q 027067          136 ARMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLP  198 (229)
Q Consensus       136 ~~~LSgGqkqRv~lAral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~  198 (229)
                      ...++.-+.+++.-..-+...|-++++=.    .|....+.+.++.+...+.+..++-++...
T Consensus       195 ~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~  253 (319)
T d1wxqa1         195 PTKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAA  253 (319)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             hhhcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHH
Confidence            34567777788777777777887776432    112223445555555556677777666543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.59  E-value=0.012  Score=47.94  Aligned_cols=37  Identities=27%  Similarity=0.392  Sum_probs=28.1

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCC-CCCCccEE
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGF-SKPSAGEI   67 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl-~~p~~G~I   67 (229)
                      +.+-+|+..+|+|+.|+|||||+..|+-- .+.+.+-+
T Consensus        63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~  100 (276)
T d2jdid3          63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS  100 (276)
T ss_dssp             SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEE
T ss_pred             ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeE
Confidence            57899999999999999999997666543 33333433

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.56  E-value=0.0069  Score=47.53  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ++.|.|.=||||||||+-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            7889999999999999888764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.55  E-value=0.009  Score=44.70  Aligned_cols=28  Identities=43%  Similarity=0.699  Sum_probs=21.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC---CCCCcc
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF---SKPSAG   65 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl---~~p~~G   65 (229)
                      .+.++|..|+|||||++-+..-   ..||-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            3689999999999999887543   345555

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.49  E-value=0.0082  Score=50.76  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             EEeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           32 SIHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        32 ~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++++.++.+.||.|+||||+.+.|++...
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            346788999999999999999999999865

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.40  E-value=0.01  Score=48.45  Aligned_cols=34  Identities=24%  Similarity=0.362  Sum_probs=27.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC------------CCCccEEEEcC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS------------KPSAGEILWNG   71 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~------------~p~~G~I~~~g   71 (229)
                      .+||+|..-||||||+++|++--            .|.-|.|.+.+
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d   57 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD   57 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence            48999999999999999999753            33457776644

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.38  E-value=0.019  Score=46.23  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCC-----------CCCccEEEEcC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFS-----------KPSAGEILWNG   71 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~-----------~p~~G~I~~~g   71 (229)
                      .+||||-.-+|||||+++|++--           .|.-|.|.+.+
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d   48 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD   48 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence            58999999999999999999653           34458876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.34  E-value=0.01  Score=48.11  Aligned_cols=29  Identities=34%  Similarity=0.633  Sum_probs=22.2

Q ss_pred             EEEEEcCCCccHHHHHHHH---HCCCCCCccEE
Q 027067           38 ALVLTGTNGSGKSTFLRML---AGFSKPSAGEI   67 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i---~Gl~~p~~G~I   67 (229)
                      -++|+|+.|||||||...|   +|... ..|+|
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~-~~g~v   35 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKE-RRGRV   35 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSS-SCCCG
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCch-hhccc
Confidence            3799999999999999988   55543 34544

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.23  E-value=0.012  Score=46.22  Aligned_cols=47  Identities=19%  Similarity=0.239  Sum_probs=33.9

Q ss_pred             CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          157 RPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       157 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      .+++|+||.=. |...++..+...+++. ..+..+|++|++++.+...+
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~-~~~~~~il~tn~~~~i~~~i  162 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQKLPVTI  162 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGGSCHHH
T ss_pred             CEEEEEECccc-CCHHHHHHHHHHHhcC-CCCeEEEEEcCCccccChhH
Confidence            45999999854 7777777777766543 23568999999987766543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.23  E-value=0.012  Score=45.78  Aligned_cols=44  Identities=14%  Similarity=-0.030  Sum_probs=31.9

Q ss_pred             hcCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 027067          154 AIDRPIWLLDEPSVAL-DYDGVRLLEYIIAEHRKKGGIVIVATHL  197 (229)
Q Consensus       154 ~~~p~illlDEPt~~L-D~~~~~~l~~~l~~~~~~g~tii~vtH~  197 (229)
                      ..+.++|++|+--.=. +...++.+..++....+.|+.+|++|..
T Consensus        95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~  139 (213)
T d1l8qa2          95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR  139 (213)
T ss_dssp             HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence            4478899999764332 2455677888888888888888887774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.18  E-value=0.016  Score=44.38  Aligned_cols=24  Identities=21%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      -+||+|.=.+|||||++.|.|...
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhhc
Confidence            389999999999999999998654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.08  E-value=0.015  Score=46.91  Aligned_cols=23  Identities=35%  Similarity=0.352  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAG   58 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~G   58 (229)
                      ..+++|.|.-|.|||||.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998753

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.014  Score=44.97  Aligned_cols=47  Identities=13%  Similarity=0.102  Sum_probs=31.9

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +.+++|+||. -.|...++..+.+.+++.. .+..+|++|++++.+...
T Consensus       108 ~~kviIide~-d~l~~~a~n~Llk~lEep~-~~~~fIl~t~~~~~ll~t  154 (207)
T d1a5ta2         108 GAKVVWVTDA-ALLTDAAANALLKTLEEPP-AETWFFLATREPERLLAT  154 (207)
T ss_dssp             SCEEEEESCG-GGBCHHHHHHHHHHHTSCC-TTEEEEEEESCGGGSCHH
T ss_pred             ccceEEechh-hhhhhhhhHHHHHHHHhhc-ccceeeeeecChhhhhhh
Confidence            3679999975 3455666677777666542 356688899998765553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.00  E-value=0.015  Score=44.93  Aligned_cols=19  Identities=26%  Similarity=0.324  Sum_probs=17.8

Q ss_pred             EEEEcCCCccHHHHHHHHH
Q 027067           39 LVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~   57 (229)
                      +||+|.-+||||||+..|.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHH
Confidence            7999999999999999985

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.00  E-value=0.013  Score=47.63  Aligned_cols=29  Identities=21%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEEEcCCCccHHHHHHHH---HCCCCCCccEE
Q 027067           38 ALVLTGTNGSGKSTFLRML---AGFSKPSAGEI   67 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i---~Gl~~p~~G~I   67 (229)
                      -+||+|..|||||||...|   +|.... .|+|
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v   39 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEV   39 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCcccc-ccce
Confidence            3799999999999999888   566543 3444

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.015  Score=49.26  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=31.9

Q ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          159 IWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       159 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      ++++||--+-...   ..+.+++.+.++.|..+++++.+++.+++.
T Consensus       279 ~l~lDE~~~~~~~---~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~  321 (433)
T d1e9ra_         279 WLFIDELASLEKL---ASLADALTKGRKAGLRVVAGLQSTSQLDDV  321 (433)
T ss_dssp             EEEESCGGGSCBC---SSHHHHHHHCTTTTEEEEEEESCHHHHHHH
T ss_pred             EEEechHhhhccc---HHHHHHHHHhCCCCceEEEEeccHHHHHHH
Confidence            6788996543332   235667777788899999999999888664

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.61  E-value=0.012  Score=47.82  Aligned_cols=37  Identities=14%  Similarity=0.095  Sum_probs=28.0

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      +.+-+|+..+|+|++|+|||+|+..+.-....+...+
T Consensus        62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~   98 (276)
T d1fx0a3          62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVIC   98 (276)
T ss_dssp             SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEE
T ss_pred             ccccCCceEeeccCCCCChHHHHHHHHhhhcccCcee
Confidence            5788999999999999999999875444334344433

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.56  E-value=0.028  Score=46.86  Aligned_cols=32  Identities=28%  Similarity=0.401  Sum_probs=25.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEE
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILW   69 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~   69 (229)
                      .+.|=|+-||||||+++.|+.-+....+.+.+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~   39 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF   39 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred             EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence            46788999999999999999987655444443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.26  E-value=0.021  Score=47.46  Aligned_cols=29  Identities=24%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ....+| ++.+.||.|+|||.|.+.|++..
T Consensus       119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            445554 66778999999999999999854

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.70  E-value=0.038  Score=45.71  Aligned_cols=24  Identities=29%  Similarity=0.587  Sum_probs=19.2

Q ss_pred             eEEEe-CCcEEEEEcCCCccHHHHH
Q 027067           30 NISIH-DGGALVLTGTNGSGKSTFL   53 (229)
Q Consensus        30 sl~i~-~Ge~~~iiG~NGsGKSTLl   53 (229)
                      |-.+. .|++..+.|.||+|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             ccccCCCCCEEEEEccCCCCccccc
Confidence            33344 4899999999999999974

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.70  E-value=0.025  Score=47.09  Aligned_cols=36  Identities=25%  Similarity=0.291  Sum_probs=27.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCCCCccEEEEcCEe
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSKPSAGEILWNGHD   73 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I~~~g~~   73 (229)
                      .+.|=|+=||||||+++.|+-.+......|.+-.++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            478889999999999999998776544455554444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.64  E-value=0.029  Score=46.26  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=25.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHCCCC-CCccEEEEcC
Q 027067           37 GALVLTGTNGSGKSTFLRMLAGFSK-PSAGEILWNG   71 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl~~i~Gl~~-p~~G~I~~~g   71 (229)
                      -++.++||+|+|||.|.+.|+-.+- ....-+.++.
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence            3678999999999999999998652 2233455544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.026  Score=46.61  Aligned_cols=24  Identities=29%  Similarity=0.581  Sum_probs=19.5

Q ss_pred             eEEE-eCCcEEEEEcCCCccHHHHH
Q 027067           30 NISI-HDGGALVLTGTNGSGKSTFL   53 (229)
Q Consensus        30 sl~i-~~Ge~~~iiG~NGsGKSTLl   53 (229)
                      |-.+ +.|++..+.|-||+|||||=
T Consensus         7 san~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           7 SANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             ccccCCCCCEEEEEccCCCCcccce
Confidence            3344 46899999999999999975

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.033  Score=44.99  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      -..|+||.|+|||++++-++..
T Consensus        41 n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEECCCCCcHHHHHHHHHHH
Confidence            4679999999999999888754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.53  E-value=0.036  Score=42.66  Aligned_cols=57  Identities=12%  Similarity=0.091  Sum_probs=30.9

Q ss_pred             HHHHHh-cCCC-eEEEeCCCCCCCHHHHH---HHHHHHHHHHhCCcEEEEEeCChhhHHhhh
Q 027067          149 LARLLA-IDRP-IWLLDEPSVALDYDGVR---LLEYIIAEHRKKGGIVIVATHLPIQIEDAM  205 (229)
Q Consensus       149 lAral~-~~p~-illlDEPt~~LD~~~~~---~l~~~l~~~~~~g~tii~vtH~~~~~~~~~  205 (229)
                      +...+. .+++ ||++||.-+-++.....   .+.++|+-+-.+|..-++.+-.+++....+
T Consensus       106 il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~  167 (195)
T d1jbka_         106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYI  167 (195)
T ss_dssp             HHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHT
T ss_pred             HHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhCCCceEEecCCHHHHHHHH
Confidence            443443 3334 88999998887764322   355666665556654444444566665543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.25  E-value=0.037  Score=46.58  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      +++. +-++||+|+|||-|.|.|+.+.
T Consensus        67 p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            4444 5677999999999999999875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.20  E-value=0.034  Score=42.61  Aligned_cols=21  Identities=19%  Similarity=0.273  Sum_probs=19.2

Q ss_pred             EEEEcCCCccHHHHHHHHHCC
Q 027067           39 LVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      +||+|.-++|||||++.|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            789999999999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.10  E-value=0.033  Score=46.35  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=19.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHCCCC
Q 027067           38 ALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      .++|=|+-||||||+++.|+....
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            478889999999999999987664

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.03  E-value=0.021  Score=46.56  Aligned_cols=27  Identities=19%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             EEEeCCcEEEEEcCCCccHHHHHHHHH
Q 027067           31 ISIHDGGALVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        31 l~i~~Ge~~~iiG~NGsGKSTLl~~i~   57 (229)
                      +.+-+|+..+|+|+.|+|||||+.-++
T Consensus        63 ~pig~GQr~~If~~~g~GKt~ll~~~~   89 (285)
T d2jdia3          63 VPIGRGQRELIIGDRQTGKTSIAIDTI   89 (285)
T ss_dssp             SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred             cCccCCCEEEeecCCCCChHHHHHHHH
Confidence            588999999999999999999986443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.81  E-value=0.036  Score=44.62  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.2

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCCCCCccEE
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFSKPSAGEI   67 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~G~I   67 (229)
                      .+-.++.+.||-++|||||+++|+.++ ++.|.+
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~  134 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV  134 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc
Confidence            445688999999999999999999998 555543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.70  E-value=0.04  Score=45.62  Aligned_cols=19  Identities=37%  Similarity=0.660  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCccHHHHH
Q 027067           35 DGGALVLTGTNGSGKSTFL   53 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl   53 (229)
                      .|++..+.|-||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999996

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.56  E-value=0.047  Score=42.38  Aligned_cols=79  Identities=11%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             HHHHHHHHhcCCCeEE----EeCCCCCCCHHHHHHHHHHHHHHHh------CCcEEEEEeC-ChhhHHhhhccCCCCCCC
Q 027067          146 RLQLARLLAIDRPIWL----LDEPSVALDYDGVRLLEYIIAEHRK------KGGIVIVATH-LPIQIEDAMNLRLPPRFP  214 (229)
Q Consensus       146 Rv~lAral~~~p~ill----lDEPt~~LD~~~~~~l~~~l~~~~~------~g~tii~vtH-~~~~~~~~~~~~~~~~~~  214 (229)
                      .+.+++++ .-+.+++    +|.....-|....+.+.+.+..+..      ....+|-+|= .-+-+.+.  ....+||.
T Consensus       132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~~--s~~~~wy~  208 (224)
T d1jnya3         132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK--SENMKWYN  208 (224)
T ss_dssp             HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC--CSSCTTCC
T ss_pred             HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcccc--cccCCCcc
Confidence            34555554 5667777    8988777777655555555555321      1234554442 21111111  22346775


Q ss_pred             CcchHHhhhhhcCC
Q 027067          215 RRMTLVDMLDRADI  228 (229)
Q Consensus       215 ~~~~~~~~~~~~~~  228 (229)
                      . .+|.++|+.-.+
T Consensus       209 ~-~~L~~~Ld~i~~  221 (224)
T d1jnya3         209 G-PTLEEYLDQLEL  221 (224)
T ss_dssp             S-CCHHHHHTTCCC
T ss_pred             c-ccHHHHHhcCCC
Confidence            4 488888887554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.12  E-value=0.028  Score=39.17  Aligned_cols=21  Identities=29%  Similarity=0.396  Sum_probs=17.8

Q ss_pred             EeCCcEEEEEcCCCccHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKSTFL   53 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl   53 (229)
                      +++|+.+.|.+|.|||||+..
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.27  E-value=0.088  Score=40.18  Aligned_cols=47  Identities=6%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhhHHhh
Q 027067          156 DRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQIEDA  204 (229)
Q Consensus       156 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~  204 (229)
                      +.+|+|+||. -.|...++..+.+.|++.. .+..+|++|++++.+-..
T Consensus        79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp-~~t~fiLit~~~~~ll~T  125 (198)
T d2gnoa2          79 TRKYVIVHDC-ERMTQQAANAFLKALEEPP-EYAVIVLNTRRWHYLLPT  125 (198)
T ss_dssp             SSEEEEETTG-GGBCHHHHHHTHHHHHSCC-TTEEEEEEESCGGGSCHH
T ss_pred             CCEEEEEeCc-cccchhhhhHHHHHHhCCC-CCceeeeccCChhhCHHH
Confidence            3589999994 5577778888888777642 367799999998766553

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=90.14  E-value=0.1  Score=37.69  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCccHHH-HHHHHHCC
Q 027067           36 GGALVLTGTNGSGKST-FLRMLAGF   59 (229)
Q Consensus        36 Ge~~~iiG~NGsGKST-Ll~~i~Gl   59 (229)
                      |.+..|+||=.||||| |++.+-..
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHH
Confidence            7788999999999999 77876544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.09  E-value=0.087  Score=41.01  Aligned_cols=19  Identities=32%  Similarity=0.473  Sum_probs=17.7

Q ss_pred             EEEEcCCCccHHHHHHHHH
Q 027067           39 LVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~   57 (229)
                      ++++|.-.+|||||+..|.
T Consensus        12 i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999994

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.09  E-value=0.058  Score=43.35  Aligned_cols=17  Identities=41%  Similarity=0.745  Sum_probs=13.9

Q ss_pred             cEEEEEcCCCccHHHHH
Q 027067           37 GALVLTGTNGSGKSTFL   53 (229)
Q Consensus        37 e~~~iiG~NGsGKSTLl   53 (229)
                      ..+.|.|+-||||||.|
T Consensus        25 g~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             SCEEEEECTTSCHHHHH
T ss_pred             CCEEEEecCCccHHHHH
Confidence            34678899999999765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.98  E-value=0.094  Score=37.14  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=22.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHH-HCCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRML-AGFSK   61 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i-~Gl~~   61 (229)
                      ++|=.+.+.|-+||||||+.++| +-+.+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            46778899999999999999998 44444

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.94  E-value=0.047  Score=38.49  Aligned_cols=41  Identities=20%  Similarity=0.251  Sum_probs=26.4

Q ss_pred             hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEe
Q 027067          154 AIDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGG-IVIVAT  195 (229)
Q Consensus       154 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~-tii~vt  195 (229)
                      ..+-+++|+||-= .+|..+...+..+++.++..+. -+|..|
T Consensus        92 ~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~~~~~~~~l~~T  133 (136)
T d1a1va1          92 GGAYDIIICDECH-STDATSILGIGTVLDQAETAGARLVVLAT  133 (136)
T ss_dssp             GCCCSEEEEETTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred             hhcCCEEEEeccc-ccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence            4567999999985 4677766667676666544433 344333

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.13  Score=42.90  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=17.4

Q ss_pred             CCcEEEEEcCCCccHHHHHH
Q 027067           35 DGGALVLTGTNGSGKSTFLR   54 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~   54 (229)
                      .+.++.|.||-|+||||++.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~  181 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVA  181 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHH
Confidence            36799999999999999873

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.50  E-value=0.077  Score=42.10  Aligned_cols=16  Identities=25%  Similarity=0.480  Sum_probs=13.5

Q ss_pred             EEEEEcCCCccHHHHH
Q 027067           38 ALVLTGTNGSGKSTFL   53 (229)
Q Consensus        38 ~~~iiG~NGsGKSTLl   53 (229)
                      -+.|+|+-||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4678999999999754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.47  E-value=0.14  Score=40.86  Aligned_cols=29  Identities=24%  Similarity=0.259  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCCCCc
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSKPSA   64 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~p~~   64 (229)
                      +=.++|+|-.-+|||||+|.|.|-.....
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~  140 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKNIAKT  140 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCCC--
T ss_pred             ceEEEEEecCccchhhhhhhhhccceEEE
Confidence            34589999999999999999999765433

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.16  E-value=0.049  Score=43.38  Aligned_cols=25  Identities=12%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             EeCCcEEEEEcCCCccHHH--HHHHHH
Q 027067           33 IHDGGALVLTGTNGSGKST--FLRMLA   57 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKST--Ll~~i~   57 (229)
                      +.+|+.+.|.+|.|||||+  |..++.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~   32 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVR   32 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            4689999999999999996  335543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.31  E-value=0.1  Score=43.41  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEcCCCccHHHHHHHH---HCCCC
Q 027067           39 LVLTGTNGSGKSTFLRML---AGFSK   61 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i---~Gl~~   61 (229)
                      +||+|.-|+|||||+..|   +|...
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~g~i~   45 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRAGIIS   45 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence            899999999999999988   46654

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.26  E-value=0.14  Score=46.45  Aligned_cols=26  Identities=19%  Similarity=0.569  Sum_probs=21.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ...+.+.|.|+||||||+-.|.|...
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~y  109 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQF  109 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            35789999999999999988877543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.24  E-value=0.13  Score=40.43  Aligned_cols=23  Identities=39%  Similarity=0.379  Sum_probs=19.1

Q ss_pred             EEEEcCCCccHHHHHHHH---HCCCC
Q 027067           39 LVLTGTNGSGKSTFLRML---AGFSK   61 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i---~Gl~~   61 (229)
                      ++|+|.-++|||||...|   +|.+.
T Consensus         9 i~iiGHvD~GKsTl~~~ll~~~g~i~   34 (239)
T d1f60a3           9 VVVIGHVDSGKSTTTGHLIYKCGGID   34 (239)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHSCSS
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence            689999999999999777   45543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.08  E-value=0.13  Score=40.44  Aligned_cols=26  Identities=27%  Similarity=0.532  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           36 GGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        36 Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +.-+.|.|+.|+||+++.++|...-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            45678999999999999999976433

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=87.82  E-value=0.14  Score=46.61  Aligned_cols=27  Identities=22%  Similarity=0.486  Sum_probs=22.6

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      .+.+.+.|.|+||||||+-.|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            357899999999999999988886543

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.70  E-value=0.13  Score=43.55  Aligned_cols=19  Identities=42%  Similarity=0.592  Sum_probs=15.9

Q ss_pred             EEEEcCCCccHHHHHHHHH
Q 027067           39 LVLTGTNGSGKSTFLRMLA   57 (229)
Q Consensus        39 ~~iiG~NGsGKSTLl~~i~   57 (229)
                      ..||||.|.|||+++.-++
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            5789999999999986544

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.33  E-value=0.12  Score=40.72  Aligned_cols=83  Identities=14%  Similarity=0.163  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHhcCCCeEEE----eCCCCCCCHHHHHHHHHHHH----HHHhC----CcEEEEEeCCh-hhHHhhhccC
Q 027067          142 GQRKRLQLARLLAIDRPIWLL----DEPSVALDYDGVRLLEYIIA----EHRKK----GGIVIVATHLP-IQIEDAMNLR  208 (229)
Q Consensus       142 GqkqRv~lAral~~~p~illl----DEPt~~LD~~~~~~l~~~l~----~~~~~----g~tii~vtH~~-~~~~~~~~~~  208 (229)
                      +|-+..........-|.++++    |-|+...+....+.+.+.+.    .+...    ...+|=+|=-. +-+.+..+..
T Consensus       148 ~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s~  227 (245)
T d1r5ba3         148 GQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDSS  227 (245)
T ss_dssp             CCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCTT
T ss_pred             cchHHHHHHHHHcCCCeEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhcc
Confidence            354444444444455667665    88877777654444433333    32211    12455555432 2233344444


Q ss_pred             CCCCCCCcchHHhhhhh
Q 027067          209 LPPRFPRRMTLVDMLDR  225 (229)
Q Consensus       209 ~~~~~~~~~~~~~~~~~  225 (229)
                      .-|||... +|.++||.
T Consensus       228 ~~~wy~G~-tl~~~ld~  243 (245)
T d1r5ba3         228 VCPWYQGP-SLLEYLDS  243 (245)
T ss_dssp             TCSSCCSC-CHHHHHHH
T ss_pred             CCCCCCCc-hHHHHHhc
Confidence            56888875 88888875

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.12  E-value=0.17  Score=46.12  Aligned_cols=26  Identities=19%  Similarity=0.446  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ..+.+.|.|+||||||+-.|.|...+
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56899999999999999988875543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.2  Score=35.70  Aligned_cols=40  Identities=18%  Similarity=0.048  Sum_probs=26.8

Q ss_pred             cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCChhh
Q 027067          155 IDRPIWLLDEPSVALDYDGVRLLEYIIAEHRKKGGIVIVATHLPIQ  200 (229)
Q Consensus       155 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~  200 (229)
                      .++++++.||---- |     .+.+++..+.+.|++|++..=|.+.
T Consensus        72 ~~~d~I~IDEaQFf-~-----dl~~~~~~~~~~~~~Viv~GLd~Df  111 (133)
T d1xbta1          72 LGVAVIGIDEGQFF-P-----DIVEFCEAMANAGKTVIVAALDGTF  111 (133)
T ss_dssp             HTCSEEEESSGGGC-T-----THHHHHHHHHHTTCEEEEECCSBCT
T ss_pred             cccceEEeehhHHH-H-----HHHHHHHHHHhcCCcEEEEEecccc
Confidence            47899999997443 2     2444455555678999887766443

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=85.68  E-value=0.21  Score=46.10  Aligned_cols=27  Identities=19%  Similarity=0.482  Sum_probs=21.7

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ...+.+.|.|+||||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356899999999999998877666543

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=84.72  E-value=0.22  Score=45.88  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHCC
Q 027067           35 DGGALVLTGTNGSGKSTFLRMLAGF   59 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTLl~~i~Gl   59 (229)
                      ..+++.|.|+||||||.-.|.|...
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~y  144 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMY  144 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999886666554

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=84.07  E-value=0.26  Score=37.87  Aligned_cols=29  Identities=28%  Similarity=0.368  Sum_probs=25.2

Q ss_pred             EeCCcEEEEEcCCCccHHHHHHHHHCCCC
Q 027067           33 IHDGGALVLTGTNGSGKSTFLRMLAGFSK   61 (229)
Q Consensus        33 i~~Ge~~~iiG~NGsGKSTLl~~i~Gl~~   61 (229)
                      +++-.++.|.||.++|||++..+|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            35667999999999999999999998864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=84.02  E-value=0.29  Score=44.58  Aligned_cols=27  Identities=15%  Similarity=0.422  Sum_probs=22.5

Q ss_pred             eCCcEEEEEcCCCccHHHHHHHHHCCC
Q 027067           34 HDGGALVLTGTNGSGKSTFLRMLAGFS   60 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~i~Gl~   60 (229)
                      ...+.+.|.|+||||||+-.|.+...+
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            357899999999999999888876543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.53  E-value=0.17  Score=38.94  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=17.9

Q ss_pred             eCCcEEEEEcCCCccHHHHHHH
Q 027067           34 HDGGALVLTGTNGSGKSTFLRM   55 (229)
Q Consensus        34 ~~Ge~~~iiG~NGsGKSTLl~~   55 (229)
                      -.|+-+.|++|.|+|||+..-+
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~   77 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLA   77 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHH
Confidence            3688899999999999976433

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.40  E-value=0.39  Score=35.57  Aligned_cols=25  Identities=28%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             cEEEEEcCC-CccHHHHHHHHHCCCC
Q 027067           37 GALVLTGTN-GSGKSTFLRMLAGFSK   61 (229)
Q Consensus        37 e~~~iiG~N-GsGKSTLl~~i~Gl~~   61 (229)
                      +.+-|.|.+ |+||||+--.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            468899997 9999999877777664

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.27  E-value=0.2  Score=37.51  Aligned_cols=18  Identities=28%  Similarity=0.497  Sum_probs=15.5

Q ss_pred             CCcEEEEEcCCCccHHHH
Q 027067           35 DGGALVLTGTNGSGKSTF   52 (229)
Q Consensus        35 ~Ge~~~iiG~NGsGKSTL   52 (229)
                      .|+-+.|.+|.|||||+.
T Consensus        39 ~~~~~il~apTGsGKT~~   56 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLL   56 (202)
T ss_dssp             TCSCEEEECSSHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHH
Confidence            567788999999999975