Citrus Sinensis ID: 027151

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG
Secondary Structure (PSIPRED)
cccEEEEcccEEcccccccccHHHHcccccHHHHHcccccccHHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccEEEEEEEEcHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEcccccccccHHHHHHHccHEEEcEcccccccEHHHHEccccEcccHHHHcccccEEEEHEEccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHEEcccEEEEEEcccccEEEc
Coil and Loop (DISEMBL)
MVQVLSLStlttsgnggfygspalWRRHFKLLEksrigidrpcfchqfVQGLHLRVTFNLLRQRNLRANAgwlfkggsdrgldassersesanEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAkrglsskseAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRlgqkvnhkifgnnmpfig
Flexible Loop (DISEMBL)
MVQVLSLStlttsgnggfygspaLWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQleakrglsskseaqDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGqkvnhkifgnnmpfig
Low Complexity Region (SEG)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKleaeslaasatalafenaRFAFRLGQKVNHKIFGNNMPFIG
Disordered region (IsUnstruct)
*********LTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKG******************DILFFFFQLDLATRVQCALNMEEYDIAQQLR******************************LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNN*****
Disordered Region (DISOPRED)
**********TTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHL****************************************DILFFFFQLDLATRVQCALNMEEYDIAQQLRN*******************************IIRLRADLQKAIDSENYALAADLRDQICKLEA**********AFENARFAFRLGQKVNHKIFGNNMPFIG
Disordered Region (DISEMBL)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGS************SANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEE*******************DKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG
Disordered Region (DISPRO)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGG*************SANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAK****SKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225423547	340	PREDICTED: uncharacterized protein LOC10	1.0	0.667	0.694	3e-81
147818712	1072	hypothetical protein VITISV_009461 [Viti	1.0	0.211	0.694	4e-81
255542114	336	DNA binding protein, putative [Ricinus c	0.951	0.642	0.695	3e-74
356499859	327	PREDICTED: uncharacterized protein LOC10	0.938	0.651	0.653	1e-63
42568906	330	uvrB/uvrC motif-containing protein [Arab	0.955	0.657	0.624	4e-63
449452875	336	PREDICTED: uncharacterized protein LOC10	0.964	0.651	0.576	1e-62
297817996	331	hypothetical protein ARALYDRAFT_904615 [	0.955	0.655	0.621	9e-62
357487407	300	F-box only protein [Medicago truncatula]	0.969	0.733	0.604	4e-61
356494893	303	PREDICTED: uncharacterized protein LOC10	0.704	0.528	0.746	1e-54
413952331	334	hypothetical protein ZEAMMB73_938746 [Ze	0.779	0.529	0.613	4e-52

>gi|225423547|ref|XP_002274826.1| PREDICTED: uncharacterized protein LOC100266199 [Vitis vinifera] gi|297738051|emb|CBI27252.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (785), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 183/229 (79%), Gaps = 2/229 (0%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGLHLRVTF 58
           MVQ +S+STLTTSGNGG YGS ALW RHF+L+ K++I  G +R    H   Q L      
Sbjct: 1   MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQL 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
            + RQRNLR  AGWLFKGG D+GLDASSE SESANEDIL FFFQLDLATRVQ ALN E+Y
Sbjct: 61  VMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQY 120

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQQLR+KLTEVE E+ +Q EAKRG +SKSEAQDKALS+IRLRADLQKAI++ENYALAA
Sbjct: 121 EIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAA 180

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG 227
           +LRD+I KLEAESLAASA AL +EN  +AFRLGQKV HK+FG +    G
Sbjct: 181 ELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICG 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]

 Score =  306 bits (785), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 159/229 (69%), Positives = 183/229 (79%), Gaps = 2/229 (0%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGLHLRVTF 58
           MVQ +S+STLTTSGNGG YGS ALW RHF+L+ K++I  G +R    H   Q L      
Sbjct: 1   MVQCVSVSTLTTSGNGGVYGSTALWGRHFQLMRKTQIRTGSERNFLWHHCAQRLFFAGQL 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
            + RQRNLR  AGWLFKGG D+GLDASSE SESANEDIL FFFQLDLATRVQ ALN E+Y
Sbjct: 61  VMQRQRNLRVEAGWLFKGGGDQGLDASSECSESANEDILIFFFQLDLATRVQYALNTEQY 120

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQQLR+KLTEVE E+ +Q EAKRG +SKSEAQDKALS+IRLRADLQKAI++ENYALAA
Sbjct: 121 EIAQQLRDKLTEVEAEVVKQREAKRGSTSKSEAQDKALSMIRLRADLQKAIEAENYALAA 180

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG 227
           +LRD+I KLEAESLAASA AL +EN  +AFRLGQKV HK+FG +    G
Sbjct: 181 ELRDEINKLEAESLAASANALVYENTPYAFRLGQKVRHKVFGYSAVICG 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542114|ref|XP_002512121.1| DNA binding protein, putative [Ricinus communis] gi|223549301|gb|EEF50790.1| DNA binding protein, putative [Ricinus communis]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 155/223 (69%), Positives = 171/223 (76%), Gaps = 7/223 (3%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWR-RHFKLLEKSR--IGIDRPCFCHQFVQGLHLRVT 57
           MVQ LSL+ LT S N G   S   WR RHFKL+ ++    GIDR    HQ VQ L+    
Sbjct: 1   MVQNLSLNALTVSRNCGICVSLPSWRGRHFKLVRRTHNAFGIDR----HQLVQSLYFMGN 56

Query: 58  FNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEE 117
            NL R RNLR  AGWLF  G ++  +AS ERSESANEDIL FFFQLDLATRVQ ALN E+
Sbjct: 57  PNLSRHRNLRVEAGWLFNRGGNQESEASCERSESANEDILIFFFQLDLATRVQYALNTEQ 116

Query: 118 YDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALA 177
           YDIAQQLRNKLTEVE E+ RQ EAKRG SSKSEAQDKALSIIRLRADLQ AI++ENYA+A
Sbjct: 117 YDIAQQLRNKLTEVEAEVIRQQEAKRGSSSKSEAQDKALSIIRLRADLQNAIENENYAMA 176

Query: 178 ADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
           A LRDQI KLEAESLAAS  ALA+ENA++AFRLGQKV HK FG
Sbjct: 177 AQLRDQISKLEAESLAASVNALAYENAQYAFRLGQKVTHKTFG 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499859|ref|XP_003518753.1| PREDICTED: uncharacterized protein LOC100794023 [Glycine max]

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/222 (65%), Positives = 171/222 (77%), Gaps = 9/222 (4%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGID--RPCFCHQFVQGLHLRVTF 58
           MVQV+SLSTL T GN    GS   W   F+  ++S+I     R    +  VQ L L    
Sbjct: 1   MVQVVSLSTLATCGNSRLCGSSPSWMAPFEPYKRSQITSSNGRHLVWNNSVQSLFL---- 56

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              R  + RA A W+F+GG ++GLDASSE SESANEDIL FFFQLDLATRVQ ALNME+Y
Sbjct: 57  --TRHSDFRAEAAWMFRGG-EQGLDASSEHSESANEDILMFFFQLDLATRVQYALNMEQY 113

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIA+QLRNKL EVEEE+ +Q ++KRGLSSK EAQDKA+SIIRLR+DLQKAI++E+YALAA
Sbjct: 114 DIAKQLRNKLAEVEEEVIKQQQSKRGLSSKGEAQDKAISIIRLRSDLQKAIENEDYALAA 173

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
           +LRD+I KLEAESLAASATALA ENA++AFRLGQKV HK FG
Sbjct: 174 ELRDEISKLEAESLAASATALAHENAQYAFRLGQKVRHKKFG 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568906|ref|NP_178438.2| uvrB/uvrC motif-containing protein [Arabidopsis thaliana] gi|51971212|dbj|BAD44298.1| unknown protein [Arabidopsis thaliana] gi|51971335|dbj|BAD44332.1| unknown protein [Arabidopsis thaliana] gi|330250601|gb|AEC05695.1| uvrB/uvrC motif-containing protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 138/221 (62%), Positives = 158/221 (71%), Gaps = 4/221 (1%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNL 60
           MVQ  SLSTLT  G+       +L R     ++ S +  DR   C    +    R  +  
Sbjct: 1   MVQSQSLSTLTICGS---VKVSSLLRNRLNSVKASSLIGDRCVSCQFLRKSPSFRSHWKS 57

Query: 61  LRQRNL-RANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEYD 119
           L+QRNL R  A W F+GG ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+YD
Sbjct: 58  LKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQYD 117

Query: 120 IAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAAD 179
           IAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA 
Sbjct: 118 IAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAAK 177

Query: 180 LRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
           LRD+I KLEAESLA SA ALAFE A +AFRLGQK+ HK FG
Sbjct: 178 LRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFG 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452875|ref|XP_004144184.1| PREDICTED: uncharacterized protein LOC101203572 [Cucumis sativus]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 128/222 (57%), Positives = 161/222 (72%), Gaps = 3/222 (1%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIG--IDRPCFCHQFVQGLHLRVTF 58
           MVQ LS+  +T  G+   YGS   WRR+FK  +++ +     R CF HQ ++   L    
Sbjct: 1   MVQDLSIHAMTALGDPNVYGSALSWRRNFKYFKQTSLTQLTSRQCFWHQCMRSFSLTSQP 60

Query: 59  NLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              ++ + +  AGWLFKGG         ERSE+AN DIL FFFQLDLATRVQ ALN+E+Y
Sbjct: 61  RRSKRGSFKIRAGWLFKGGGQES-GGRIERSENANNDILIFFFQLDLATRVQYALNIEQY 119

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           +IAQ+LR KLTEVE E+ +Q E+K+GL+SKSE QDK L+IIRLRADLQKA++SENYALAA
Sbjct: 120 EIAQELRMKLTEVEAEVIKQQESKKGLTSKSEVQDKGLNIIRLRADLQKAVESENYALAA 179

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
            LRD+I KLE +SLAASA  LA+E+A ++FRLGQKV HKIFG
Sbjct: 180 QLRDEISKLETDSLAASAKVLAYESAEYSFRLGQKVRHKIFG 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817996|ref|XP_002876881.1| hypothetical protein ARALYDRAFT_904615 [Arabidopsis lyrata subsp. lyrata] gi|297322719|gb|EFH53140.1| hypothetical protein ARALYDRAFT_904615 [Arabidopsis lyrata subsp. lyrata]

 Score =  242 bits (617), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 138/222 (62%), Positives = 158/222 (71%), Gaps = 5/222 (2%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQGLHLRVTFNL 60
           MVQ  SLSTLT  G+       +L R      + S +  DR   C    +    R  +  
Sbjct: 1   MVQSQSLSTLTICGS---VKVSSLLRNRLNSSKASSLIGDRCVSCQFLRKSPSFRSHWKS 57

Query: 61  LRQRNL-RANAGWLFKGGS-DRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
           ++QRNL R  A W F+GG  ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+Y
Sbjct: 58  IKQRNLLRVEARWPFQGGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 117

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA
Sbjct: 118 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 177

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
            LRD+I KLEAESLA SA ALAFENA +AFRLGQK+ HK FG
Sbjct: 178 KLRDEISKLEAESLAVSAKALAFENAEYAFRLGQKLRHKTFG 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487407|ref|XP_003613991.1| F-box only protein [Medicago truncatula] gi|355515326|gb|AES96949.1| F-box only protein [Medicago truncatula]

 Score =  240 bits (612), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 139/230 (60%), Positives = 172/230 (74%), Gaps = 10/230 (4%)

Query: 1   MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRI--GIDRPCFCHQFVQGL-HLRVT 57
           MVQ +SLSTL T G    YGSP      F+  ++S I     +    ++ V+ L  +   
Sbjct: 1   MVQGVSLSTLATCGKSRIYGSP------FEPFKQSHITSSTGKHLVWNKCVKSLVFIGYP 54

Query: 58  FNLLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEE 117
           F   ++   +  AGW+F+GG ++ LDAS E+SESANEDIL FFFQLDLATRVQCALNMEE
Sbjct: 55  FASRQRSGFKVEAGWMFRGG-EQELDASVEQSESANEDILMFFFQLDLATRVQCALNMEE 113

Query: 118 YDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALA 177
           YDIA+QLRNKLTEVEEE+ +Q ++KRG+SSKSEAQDKALS+IRLR+DLQ AI++E+YALA
Sbjct: 114 YDIAKQLRNKLTEVEEEVIKQKQSKRGMSSKSEAQDKALSVIRLRSDLQSAIENEDYALA 173

Query: 178 ADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFGNNMPFIG 227
           A LRD+I KLEAESLAASA ALA ENA++ FRLGQKV HK+FG     +G
Sbjct: 174 AKLRDEISKLEAESLAASAKALAHENAQYVFRLGQKVKHKMFGYRAIIVG 223

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356494893|ref|XP_003516316.1| PREDICTED: uncharacterized protein LOC100783767 [Glycine max]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/162 (74%), Positives = 140/162 (86%), Gaps = 2/162 (1%)

Query: 60  LLRQRNLRANAGWLFKGGSDRGLDASSERSESANEDIL-FFFFQLDLATRVQCALNMEEY 118
           L R    RA A W+F+GG ++GLD SSE SESANEDIL FFFFQLDLATRVQ ALNME+Y
Sbjct: 31  LTRHSGFRAEAAWMFRGG-EQGLDVSSEHSESANEDILMFFFFQLDLATRVQYALNMEQY 89

Query: 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
           DIA+QLRNKL EVEEE+ +Q ++KRGLSSKSEAQDKA+SIIRL +DLQ AI++E+YALAA
Sbjct: 90  DIAKQLRNKLAEVEEEVIKQQQSKRGLSSKSEAQDKAISIIRLHSDLQNAIENEHYALAA 149

Query: 179 DLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKIFG 220
           +LRD+I KLEAESLAASA ALA ENA++AFRLGQKV HK FG
Sbjct: 150 ELRDEISKLEAESLAASAKALAHENAQYAFRLGQKVRHKKFG 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413952331|gb|AFW84980.1| hypothetical protein ZEAMMB73_938746 [Zea mays] gi|413952332|gb|AFW84981.1| hypothetical protein ZEAMMB73_938746 [Zea mays] gi|413952333|gb|AFW84982.1| hypothetical protein ZEAMMB73_938746 [Zea mays]

 Score =  210 bits (534), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 116/189 (61%), Positives = 139/189 (73%), Gaps = 12/189 (6%)

Query: 42  PCFCHQFVQGLHLRVTF--------NLLRQRN--LRANAGWLFKGGSDRGLDASSERSES 91
           PC  +   QGLH    +        N  R+ N  ++ NA WLF GG  R  DA  ERSES
Sbjct: 31  PCEVNAVSQGLHSLHWWCAHKPQMKNNGRRMNAAVKTNARWLF-GGDGRSNDARLERSES 89

Query: 92  ANEDILFFFFQLDLATRVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEA 151
           ANEDIL F+FQ+DL TR+Q ALN+E++D+A+QLR KLTE+E EI RQ EA+RG S K+EA
Sbjct: 90  ANEDILIFYFQMDLQTRIQYALNIEQFDVAKQLREKLTEIETEIIRQREARRG-SPKTEA 148

Query: 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASATALAFENARFAFRLG 211
           QDKAL++IR+RADLQKAIDSENYALAA LRD I KLE ESLA SA ALA++N ++AFRLG
Sbjct: 149 QDKALNLIRVRADLQKAIDSENYALAAGLRDDIAKLEVESLAVSAKALAYQNVKYAFRLG 208

Query: 212 QKVNHKIFG 220
           QKV H I G
Sbjct: 209 QKVRHNIHG 217

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2063761	330	AT2G03390 [Arabidopsis thalian	0.951	0.654	0.576	3.5e-52

TAIR|locus:2063761 AT2G03390 [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 128/222 (57%), Positives = 146/222 (65%)

Query:     1 MVQVLSLSTLTTSGNGGFYGSPALWRRHFKLLEKSRIGIDRPCFCHQFVQ-GLHLRVTFN 59
             MVQ  SLSTLT  G+     S  L  R   +   S IG DR C   QF++     R  + 
Sbjct:     1 MVQSQSLSTLTICGSVKV--SSLLRNRLNSVKASSLIG-DR-CVSCQFLRKSPSFRSHWK 56

Query:    60 LLRQRNL-RANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLATRVQCALNMEEY 118
              L+QRNL R  A W F+GG ++GLD SSERSESANEDIL FFFQLDLATRVQ A+N+E+Y
Sbjct:    57 SLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQYAMNLEQY 116

Query:   119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAA 178
             DIAQQLR KLTEVEEE  R  E KRG S+KSEAQDK +SIIRLRADLQ AIDSE+Y LAA
Sbjct:   117 DIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSEDYGLAA 176

Query:   179 DLRDQICKXXXXXXXXXXXXXXXXXXRFAFRLGQKVNHKIFG 220
              LRD+I K                   +AFRLGQK+ HK FG
Sbjct:   177 KLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFG 218


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.137   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       209   0.00079  112 3  11 22  0.45    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  157 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.81u 0.09s 21.90t   Elapsed:  00:00:01
  Total cpu time:  21.81u 0.09s 21.90t   Elapsed:  00:00:01
  Start:  Fri May 10 02:04:22 2013   End:  Fri May 10 02:04:23 2013

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0004518 "nuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030079001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (230 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
COG0556	663	COG0556, UvrB, Helicase subunit of the DNA excisio	5e-05
pfam02151	36	pfam02151, UVR, UvrB/uvrC motif	2e-04
PRK05298	652	PRK05298, PRK05298, excinuclease ABC subunit B; Pr	0.002

>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 108 RVQCALNMEEYDIAQQLRNK----LTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRA 163
            +Q A N EE+ I  Q   K    + + E E           +SK   ++    I +L  
Sbjct: 573 EIQMAYN-EEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEK 631

Query: 164 DLQKAIDSENYALAADLRDQICKLEAESLAAS 195
           ++++A  +  +  AA LRD+I +L+ E L  S
Sbjct: 632 EMKEAAKNLEFEEAARLRDEIKELKEELLGKS 663

Length = 663

>gnl|CDD|145355 pfam02151, UVR, UvrB/uvrC motif

 Score = 37.4 bits (88), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
           I  L  ++++A + E++  AA LRDQI  LE +
Sbjct: 4   IKELEEEMEEAAEEEDFEKAAKLRDQIKALEKQ 36

Length = 36

>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional

 Score = 38.5 bits (91), Expect = 0.002
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 134 EISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLA 193
           +I   L++       S+ + + L I  L   +++A  +  +  AA LRD+I +L+ E L 
Sbjct: 592 KIRDILDSVYKKDKLSKKELEKL-IKELEKQMKEAAKNLEFEEAARLRDEIKELKEELLG 650

Query: 194 AS 195
            S
Sbjct: 651 LS 652

Length = 652

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
COG3880	176	Modulator of heat shock repressor CtsR, McsA [Sign	99.71
PF02151	36	UVR: UvrB/uvrC motif; InterPro: IPR001943 During t	98.71
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	97.05
TIGR00631	655	uvrb excinuclease ABC, B subunit. This family is b	96.65
PRK05298	652	excinuclease ABC subunit B; Provisional	96.64
PRK07883	557	hypothetical protein; Validated	96.62
PRK00558	598	uvrC excinuclease ABC subunit C; Validated	96.58
PRK12306	519	uvrC excinuclease ABC subunit C; Reviewed	96.23
PRK14666	694	uvrC excinuclease ABC subunit C; Provisional	96.13
PRK14667	567	uvrC excinuclease ABC subunit C; Provisional	96.08
PRK14671	621	uvrC excinuclease ABC subunit C; Provisional	96.04
PRK14668	577	uvrC excinuclease ABC subunit C; Provisional	96.01
TIGR00194	574	uvrC excinuclease ABC, C subunit. This family cons	95.99
PRK14672	691	uvrC excinuclease ABC subunit C; Provisional	95.95
PRK14670	574	uvrC excinuclease ABC subunit C; Provisional	95.94
PRK14669	624	uvrC excinuclease ABC subunit C; Provisional	95.94
COG0322	581	UvrC Nuclease subunit of the excinuclease complex	95.48
PF04420	161	CHD5: CHD5-like protein; InterPro: IPR007514 Membe	86.09

>COG3880 Modulator of heat shock repressor CtsR, McsA [Signal transduction mechanisms]

Probab=99.71  E-value=5.9e-18  Score=144.63  Aligned_cols=91  Identities=25%  Similarity=0.291  Sum_probs=77.1

Q ss_pred             Cceeeccccccccc-----cccccccHHhhHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHH--HhhHHhHHHHHHHHH
Q 027151           94 EDILFFFFQLDLAT-----RVQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEA--QDKALSIIRLRADLQ  166 (227)
Q Consensus        94 e~i~cf~cqldl~t-----RLGCp~CYE~F~~a~~Lr~kL~~vh~ev~~~~e~~~Gks~~~~a--~~~~~~LeeLr~~Lq  166 (227)
                      +.+.|+.|+++|..     |+||+.||.+|.+  .|.|.+++|+.+-    ..|+||.++.+.  .....+|..|++.|+
T Consensus        73 e~l~C~~C~~Tfk~f~~~g~fGCaeCY~tf~~--~i~pi~~rvq~g~----~~H~GK~P~~~~~~i~~~~~I~~L~e~Lq  146 (176)
T COG3880          73 ELLGCHNCGMTFKEFIQSGLFGCAECYKTFES--QISPIITRVQGGY----VEHVGKVPKRIGRKINPKRKIIALKEALQ  146 (176)
T ss_pred             HHhcCccccccHHHHHHhcccchHHHHHHHHH--HhhHHHHHhhCCc----eeecCcCcccccccccHHHHHHHHHHHHH
Confidence            36889999998865     9999999999997  9999999999882    347898333222  235568999999999


Q ss_pred             HHHhhcchHHHHHHHHHHhhHhhh
Q 027151          167 KAIDSENYALAADLRDQICKLEAE  190 (227)
Q Consensus       167 ~AIe~EdYE~AA~LRDeIk~Le~~  190 (227)
                      ++|+.||||+||.|||+|+.|+.+
T Consensus       147 ~~i~~EefEeAA~iRDqIr~Lk~k  170 (176)
T COG3880         147 DLIEREEFEEAAVIRDQIRALKAK  170 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999865

>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []

Probab=98.71  E-value=2.2e-08  Score=65.44  Aligned_cols=34  Identities=35%  Similarity=0.556  Sum_probs=30.6

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAE  190 (227)
Q Consensus       157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~  190 (227)
                      .|.+|+.+|++|++++|||+||.|||+|..|+.+
T Consensus         3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~q   36 (36)
T PF02151_consen    3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKKQ   36 (36)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999853

UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=97.05  E-value=0.0013  Score=66.06  Aligned_cols=39  Identities=31%  Similarity=0.400  Sum_probs=34.8

Q ss_pred             hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhH
Q 027151          154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESL  192 (227)
Q Consensus       154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~  192 (227)
                      .+..|.+|+++|.+|.++-+||+||+|||+|++|+++..
T Consensus       622 ~~~~I~~Le~~M~~aA~~l~FE~Aa~lRD~i~~L~~~~~  660 (663)
T COG0556         622 LEKLIKKLEKEMKEAAKNLEFEEAARLRDEIKELKEELL  660 (663)
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence            444799999999999999999999999999999986653

>TIGR00631 uvrb excinuclease ABC, B subunit

Probab=96.65  E-value=0.0019  Score=64.45  Aligned_cols=33  Identities=30%  Similarity=0.433  Sum_probs=30.3

Q ss_pred             HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHh
Q 027151          156 LSIIRLRADLQKAIDSENYALAADLRDQICKLE  188 (227)
Q Consensus       156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le  188 (227)
                      .-|.+|+++|++|.++++||+||++||+|+.|+
T Consensus       623 ~~i~~l~~~M~~aa~~l~FE~Aa~~RD~i~~L~  655 (655)
T TIGR00631       623 KLIKQLEKEMKQAARNLEFEEAARLRDEILELK  655 (655)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            357889999999999999999999999999874

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)

>PRK05298 excinuclease ABC subunit B; Provisional

Probab=96.64  E-value=0.0024  Score=63.32  Aligned_cols=37  Identities=30%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151          155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (227)
Q Consensus       155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~  191 (227)
                      +..+.+|+++|++|.++++||+||++||+|+.|+...
T Consensus       612 ~~~~~~l~~~M~~aa~~l~fE~Aa~~Rd~i~~l~~~~  648 (652)
T PRK05298        612 EKLIKELEKQMKEAAKNLEFEEAARLRDEIKELKEEL  648 (652)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            3468899999999999999999999999999998643

>PRK07883 hypothetical protein; Validated

Probab=96.62  E-value=0.0022  Score=62.86  Aligned_cols=33  Identities=30%  Similarity=0.471  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEAE  190 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~  190 (227)
                      +.+|+++|++|.++.+||+||++||+|..++.-
T Consensus       408 ~~~l~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~~  440 (557)
T PRK07883        408 LAALRARIDRLAAAERFEEAARLRDRLAALLRA  440 (557)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            669999999999999999999999999999853

>PRK00558 uvrC excinuclease ABC subunit C; Validated

Probab=96.58  E-value=0.0023  Score=63.32  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (227)
Q Consensus       157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~  191 (227)
                      -+.+|+++|++|.++++||+||.+||+|..|+.-.
T Consensus       203 ~i~~L~~~M~~aa~~l~FE~Aa~~RD~i~aL~~~~  237 (598)
T PRK00558        203 VLKELEEKMEEASENLEFERAARYRDQIQALRRVQ  237 (598)
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            47799999999999999999999999999998543

>PRK12306 uvrC excinuclease ABC subunit C; Reviewed

Probab=96.23  E-value=0.0049  Score=60.49  Aligned_cols=32  Identities=22%  Similarity=0.423  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||.|..++.
T Consensus       194 ~~~L~~~M~~aa~~l~FE~Aa~~RD~l~~l~~  225 (519)
T PRK12306        194 IEKLEEEMAEKAKNQQFERALVIRDEINAIEN  225 (519)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999984

>PRK14666 uvrC excinuclease ABC subunit C; Provisional

Probab=96.13  E-value=0.0059  Score=62.13  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||+|+.++.
T Consensus       203 ~~~L~~~M~~AAe~l~FE~AA~lRD~i~aL~~  234 (694)
T PRK14666        203 VDALRTEMEAASEALEFERAAVLRDQIRAVER  234 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

>PRK14667 uvrC excinuclease ABC subunit C; Provisional

Probab=96.08  E-value=0.0067  Score=60.17  Aligned_cols=32  Identities=28%  Similarity=0.313  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||+|..++.
T Consensus       201 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  232 (567)
T PRK14667        201 LPELYDKIEEYSQKLMFEKAAVIRDQILALEN  232 (567)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

>PRK14671 uvrC excinuclease ABC subunit C; Provisional

Probab=96.04  E-value=0.007  Score=60.46  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +++|+++|++|.++.+||+||++||+|..++.
T Consensus       217 ~~~L~~~M~~as~~l~FE~Aa~~RD~i~~l~~  248 (621)
T PRK14671        217 IRSLTEEMQRAAAELKFEEAAELKDQIESLKR  248 (621)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

>PRK14668 uvrC excinuclease ABC subunit C; Provisional

Probab=96.01  E-value=0.0071  Score=59.98  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      -+++|+++|++|.++.+||+||++||+|+.++.
T Consensus       200 ~~~~l~~~m~~aa~~l~FE~Aa~~Rd~i~~l~~  232 (577)
T PRK14668        200 LADPLRREMEAAAQAQEFERAANLRDRLEAVEA  232 (577)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            366899999999999999999999999999974

>TIGR00194 uvrC excinuclease ABC, C subunit

Probab=95.99  E-value=0.0074  Score=59.83  Aligned_cols=32  Identities=31%  Similarity=0.470  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+.+|++|.++.+||+||++||+|+.++.
T Consensus       196 ~~~L~~~M~~aa~~l~FE~Aa~~Rd~i~~l~~  227 (574)
T TIGR00194       196 IKELEQKMEKASENLEFEEAARIRDQIAAVRE  227 (574)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

This family consists of the DNA repair enzyme UvrC, an ABC excinuclease subunit which interacts with the UvrA/UvrB complex to excise UV-damaged nucleotide segments.

>PRK14672 uvrC excinuclease ABC subunit C; Provisional

Probab=95.95  E-value=0.0081  Score=61.15  Aligned_cols=32  Identities=28%  Similarity=0.551  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||+|..|+.
T Consensus       207 l~~L~~~M~~AA~~l~FE~AA~lRD~i~aL~~  238 (691)
T PRK14672        207 VARLEKRMKRAVRQEAFEAAARIRDDIQAIRC  238 (691)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999973

>PRK14670 uvrC excinuclease ABC subunit C; Provisional

Probab=95.94  E-value=0.0083  Score=59.63  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||+|..++.
T Consensus       179 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~al~~  210 (574)
T PRK14670        179 LSQIEIKMKEAIQKEDFEAAIKLKETKRSLIE  210 (574)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

>PRK14669 uvrC excinuclease ABC subunit C; Provisional

Probab=95.94  E-value=0.0082  Score=60.19  Aligned_cols=32  Identities=34%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEA  189 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~  189 (227)
                      +.+|+++|++|.++.+||+||++||+|+.|+.
T Consensus       205 ~~~L~~~M~~aa~~l~FE~Aa~~RD~i~~l~~  236 (624)
T PRK14669        205 ARSLRARMEAAALEMQFELAAKYRDLITTVEE  236 (624)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999974

>COG0322 UvrC Nuclease subunit of the excinuclease complex [DNA replication, recombination, and repair]

Probab=95.48  E-value=0.016  Score=57.93  Aligned_cols=58  Identities=28%  Similarity=0.341  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh----------HHhHHHHHHhhhcc-----cccccchhhh
Q 027151          158 IIRLRADLQKAIDSENYALAADLRDQICKLEAES----------LAASATALAFENAR-----FAFRLGQKVN  215 (227)
Q Consensus       158 LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~----------~a~~a~Al~~~n~~-----~~frlGq~v~  215 (227)
                      +.+|+++|++|-++.+||+||+|||.|..++.-.          ...+.-|++.++..     |-+|.|+.+.
T Consensus       204 ~~~L~~~M~~As~~l~FE~Aa~~RD~i~al~~l~~~q~v~~~~~~~~Dv~a~~~~~~~~~v~vf~~R~Gkllg  276 (581)
T COG0322         204 LQELEEKMEEASENLDFERAARLRDQIKALEKLQEKQAVSLFKLQDLDVIAGAVDGGEACVQVFFVRGGKLLG  276 (581)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhccccccCCccchhhheeeecCCeEEEEEEEeecchhcC
Confidence            6689999999999999999999999999997311          12334444445422     5677777654

>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein

Probab=86.09  E-value=1.6  Score=36.63  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=36.5

Q ss_pred             hHHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHhHH
Q 027151          154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA  196 (227)
Q Consensus       154 ~~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~~a  196 (227)
                      ...++.+|+++|+.-=..++|.+.|++|-++.+++++.+....
T Consensus        45 l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~   87 (161)
T PF04420_consen   45 LRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNK   87 (161)
T ss_dssp             HHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4447899999999988899999999999999999988876555

The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 6/28 (21%)

Query: 181 RDQICKLEAESL---AA-SATALAFENA 204
           +  + KL+A SL   A  SA ALA   A
Sbjct: 19  KQALKKLQA-SLKLYADDSAPALAI-KA 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
1e52_A	63	Excinuclease ABC subunit; DNA excision repair, UVR	98.44
2d7d_A	661	Uvrabc system protein B; helicase, protein-DNA-ADP	97.41
1c4o_A	664	DNA nucleotide excision repair enzyme UVRB; uvrabc	97.11
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.69

>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*

Probab=97.41  E-value=8.5e-05  Score=71.19  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=27.5

Q ss_pred             HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhh
Q 027151          156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAE  190 (227)
Q Consensus       156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~  190 (227)
                      ..|.+|+++|++|.+++|||+||+|||+|+.|+.+
T Consensus       626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~  660 (661)
T 2d7d_A          626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE  660 (661)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence            35889999999999999999999999999999754

>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*

Probab=97.11  E-value=7.3e-05  Score=71.70  Aligned_cols=36  Identities=33%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhh
Q 027151          156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAES  191 (227)
Q Consensus       156 ~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~  191 (227)
                      ..|.+|+++|++|+++++||+||+|||+|+.|++++
T Consensus       611 ~~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~  646 (664)
T 1c4o_A          611 ERIAELELAMWQAAEALDFERAARLRDEIRALEARL  646 (664)
T ss_dssp             ------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.69  E-value=0.35  Score=44.09  Aligned_cols=40  Identities=23%  Similarity=0.320  Sum_probs=35.3

Q ss_pred             HHhHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHh
Q 027151          155 ALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA  194 (227)
Q Consensus       155 ~~~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~  194 (227)
                      +..|++|+.+++.+|..+|||+|++|++++.+++++.+..
T Consensus       400 ~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~  439 (468)
T 3pxg_A          400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT  439 (468)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4478899999999999999999999999999999877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1e52a_	56	a.2.9.1 (A:) C-terminal UvrC-binding domain of Uvr	0.001

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]} Length = 56

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 158 IIRLRADLQKAIDSENYALAADLRDQICKLEAESLAAS 195
           I  L   + +   +  +  AA +RDQ+ +L    +AAS
Sbjct: 19  IHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1e52a_	56	C-terminal UvrC-binding domain of UvrB {Escherichi	98.54
d2fzta1	78	Hypothetical protein TM0693 {Thermotoga maritima [	86.43

>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: C-terminal UvrC-binding domain of UvrB
family: C-terminal UvrC-binding domain of UvrB
domain: C-terminal UvrC-binding domain of UvrB
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=3.3e-08  Score=68.54  Aligned_cols=38  Identities=26%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHhhHhhhhHHh
Q 027151          157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA  194 (227)
Q Consensus       157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~Le~~~~a~  194 (227)
                      .|.+|+++|.+|.++.+||+||.|||+|+.|++...+.
T Consensus        18 ~i~~Le~~M~~aa~~l~FE~AA~~RD~I~~l~~~l~~~   55 (56)
T d1e52a_          18 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAA   55 (56)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999776543

>d2fzta1 a.46.3.1 (A:1-78) Hypothetical protein TM0693 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: TM0693-like
family: TM0693-like
domain: Hypothetical protein TM0693
species: Thermotoga maritima [TaxId: 2336]

Probab=86.43  E-value=0.33  Score=34.71  Aligned_cols=31  Identities=23%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHHHhhcchHHHHHHHHHHhhH
Q 027151          157 SIIRLRADLQKAIDSENYALAADLRDQICKL  187 (227)
Q Consensus       157 ~LeeLr~~Lq~AIe~EdYE~AA~LRDeIk~L  187 (227)
                      +|.+++.++++||+.||||.--.|=|+=.++
T Consensus         2 ~I~EiErkIDeaIE~EDyE~L~~LL~kReel   32 (78)
T d2fzta1           2 NIDEIERKIDEAIEKEDYETLLSLLNKRKEL   32 (78)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5789999999999999999887776654443