Citrus Sinensis ID: 027165

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPIDGKIETVSAQ
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEccccccHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHEHccEEEEEccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHccccccccccccEcEcccc
Coil and Loop (DISEMBL)
MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYakessgplkpgvqAVEATVKTVLGpiyedlhdvpFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWlnrlpvfpqvaQIVIPTAACWSEKYNQLVRcteergypiatylplipteriakvfdegptptvpidgkietvsaq
Flexible Loop (DISEMBL)
msdseakqltetrteadekrlkyLDFVQVAAIYIIVCFSTVYEYAKEssgplkpgvQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDegptptvpidgkietvsaq
Low Complexity Region (SEG)
MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPIDGKIETVSAQ
Disordered region (IsUnstruct)
*******************RLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESL******************RAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDE******************
Disordered Region (DISOPRED)
***********************LDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIA***********************
Disordered Region (DISEMBL)
**************EADEKRLKYLDFVQVAAIYIIVCFSTVYEYA********PGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPIDGKIETVSAQ
Disordered Region (DISPRO)
***************ADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG*****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPIDGKIETVSAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q9SW70	248	Stress-related protein OS	N/A	no	0.964	0.883	0.662	6e-82
O82246	235	REF/SRPP-like protein At2	yes	no	0.863	0.834	0.561	6e-60
Q9MA63	246	REF/SRPP-like protein At3	no	no	0.903	0.833	0.488	7e-55
O82803	204	Small rubber particle pro	N/A	no	0.837	0.931	0.477	2e-49
Q41112	167	Stress-related protein OS	N/A	no	0.713	0.970	0.564	9e-49
A2Y0H2	253	REF/SRPP-like protein OsI	N/A	no	0.828	0.743	0.487	3e-44
Q9FRA7	253	REF/SRPP-like protein Os0	no	no	0.828	0.743	0.487	3e-44
Q9FYF7	240	REF/SRPP-like protein At1	no	no	0.854	0.808	0.333	4e-28
P15252	138	Rubber elongation factor	N/A	no	0.440	0.724	0.44	2e-16

>sp|Q9SW70|SRP_VITRI Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1

 Score =  303 bits (776), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 183/243 (75%), Gaps = 24/243 (9%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SEAKQ  ET    +EKRLKYLDFVQVAAIY+IVCFS++YEYAKE+SGPLKPGVQ VE
Sbjct: 1   MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVKTV+GP+YE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS Q          
Sbjct: 60  GTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPE 119

Query: 111 -ARAMAFEVQRVGVVDAATTIMNSMY-----------SKYEQVAEQYALSAWRWLNRLPV 158
            A A+A EVQR GVVD A  I  ++Y           SKYE VAEQYA+SAWR LNRLP+
Sbjct: 120 LALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPL 179

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTVPI 217
           FPQVAQ+V+PTAA WSEKYNQ V  T ERGY +A YLPLIPTERIAKVF +G   PTV  
Sbjct: 180 FPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSALPTVET 239

Query: 218 DGK 220
           +G 
Sbjct: 240 NGN 242

Vitis riparia (taxid: 96939)

>sp|O82246|Y2778_ARATH REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1

 Score =  230 bits (586), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 110/196 (56%), Positives = 145/196 (73%)

Query: 15  EADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDL 74
           + DE +LK+L+F+QVAA+Y   CFST+YE AK+++GPLK GV+ +E  V+TVL P+YE  
Sbjct: 35  DDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKF 94

Query: 75  HDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSM 134
           HDVPF+LL FVDRKV++   ++E +VPSLVKQASSQA  +A EVQR GVVD   +I  S+
Sbjct: 95  HDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSV 154

Query: 135 YSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATY 194
             KYE  AE YA + WR LN+LP+FP+VA +VIPTA  WSEKYN  VR   +R Y  A Y
Sbjct: 155 RDKYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEY 214

Query: 195 LPLIPTERIAKVFDEG 210
           LP+IP E+I+ + ++ 
Sbjct: 215 LPMIPIEKISDILEQD 230

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA63|Y3550_ARATH REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1

 Score =  213 bits (543), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 111/227 (48%), Positives = 158/227 (69%), Gaps = 22/227 (9%)

Query: 14  TEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYED 73
           T+ +++RLKYL FVQ AA+  ++ F+ +Y  AK+ SGPLKPGV++VE  VKTV+GP+YE 
Sbjct: 15  TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query: 74  LHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ-----------ARAMAFEVQRVG 122
            HDVP E+L+++D+KV+ S+ EL+R VP +VKQ S+Q           ARA+A EV+R G
Sbjct: 75  YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query: 123 VVDAATTIMNSMYSKYEQV-----------AEQYALSAWRWLNRLPVFPQVAQIVIPTAA 171
           VV+ A+ +  S+YSKYE             AEQ A+SAW+ LN+LP+FP++AQ+ +PTAA
Sbjct: 135 VVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAA 194

Query: 172 CWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPID 218
             SEKYN  V    E+GY + +Y+PL+PTERI+K+F E    T P++
Sbjct: 195 FCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPLE 241

Arabidopsis thaliana (taxid: 3702)

>sp|O82803|SRPP_HEVBR Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 97/203 (47%), Positives = 142/203 (69%), Gaps = 13/203 (6%)

Query: 15  EADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDL 74
           E +E+RLKYLDFV+ A +Y +  FST+Y YAK+ SGPLKPGV  +E  VKTV+ P+Y   
Sbjct: 4   EVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY-- 61

Query: 75  HDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNS- 133
             +P E ++FVD+ V+ S+  L+  VP ++KQ S+Q  ++A +  R+ V+D A+++ N+ 
Sbjct: 62  --IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRI-VLDVASSVFNTG 118

Query: 134 -------MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEE 186
                  +Y+  E  AEQYA+  WR LN+LP+ PQVA +V+PTA  +SEKYN +VR T E
Sbjct: 119 VQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTE 178

Query: 187 RGYPIATYLPLIPTERIAKVFDE 209
           +GY +++YLPL+PTE+I KVF +
Sbjct: 179 QGYRVSSYLPLLPTEKITKVFGD 201

Involved in the biosynthesis of rubber, an isoprenoid polymer (cis-1,4-polyisoprene).

Hevea brasiliensis (taxid: 3981)

>sp|Q41112|SRP_PHAVU Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1

 Score =  193 bits (490), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 96/170 (56%), Positives = 126/170 (74%), Gaps = 8/170 (4%)

Query: 39  STVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELER 98
           + +Y YAKE +GPLKPGV  VE  VKTV+ P+Y+  H VP ELL++ DRKV    GEL+R
Sbjct: 4   AILYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKV----GELDR 59

Query: 99  HVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPV 158
           HVPS VK+ SSQAR++  EV+R GV    +T   ++YSKYE  AEQ A+SAWR LN+LP+
Sbjct: 60  HVPSNVKKVSSQARSVVSEVRRDGV----STFAKTVYSKYEPTAEQCAVSAWRKLNQLPL 115

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFD 208
           FPQVA  V+P AA  +EKYN+++  + E+GY ++ YLPL+PTE+IAKVF 
Sbjct: 116 FPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165

Plays a role in plant defense.

Phaseolus vulgaris (taxid: 3885)

>sp|A2Y0H2|Y5513_ORYSI REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 134/199 (67%), Gaps = 11/199 (5%)

Query: 20  RLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPF 79
           RL+YL+FVQ AA  ++V  +  Y YAK+ +GPL+PGV  VE TVK V+GP+Y+  H VP 
Sbjct: 34  RLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPL 93

Query: 80  ELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNS------ 133
           +LL+F+DRKV ES+ EL+R VP +VK+A   AR+ A EV++ G+V  AT +  S      
Sbjct: 94  DLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE 153

Query: 134 -----MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERG 188
                +Y++YE VAE+ A  AW  LNRLP+ P V + V+P AA  S +YN  V    +RG
Sbjct: 154 PRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRG 213

Query: 189 YPIATYLPLIPTERIAKVF 207
             +ATYLPL+PTER+++VF
Sbjct: 214 SAVATYLPLVPTERLSRVF 232

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9FRA7|Y5513_ORYSJ REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2

 Score =  178 bits (451), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 134/199 (67%), Gaps = 11/199 (5%)

Query: 20  RLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPF 79
           RL+YL+FVQ AA  ++V  +  Y YAK+ +GPL+PGV  VE TVK V+GP+Y+  H VP 
Sbjct: 34  RLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPL 93

Query: 80  ELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNS------ 133
           +LL+F+DRKV ES+ EL+R VP +VK+A   AR+ A EV++ G+V  AT +  S      
Sbjct: 94  DLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE 153

Query: 134 -----MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERG 188
                +Y++YE VAE+ A  AW  LNRLP+ P V + V+P AA  S +YN  V    +RG
Sbjct: 154 PRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRG 213

Query: 189 YPIATYLPLIPTERIAKVF 207
             +ATYLPL+PTER+++VF
Sbjct: 214 SAVATYLPLVPTERLSRVF 232

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FYF7|Y1736_ARATH REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 13/207 (6%)

Query: 13  RTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYE 72
           +  + E  LK+L FV++A I+I+   S +YEYAK++SGPLK  V+ VE  V TV+ P+Y+
Sbjct: 5   KKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQ 64

Query: 73  DLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQ----------RVG 122
              DVP  LL F+D KV E   + + H P + K+  +QA  + ++            R G
Sbjct: 65  KFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTG 124

Query: 123 VVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVR 182
              AA    N   ++Y+      ++  W  LN+      +    +P AA +S +YN LV 
Sbjct: 125 GPKAA---FNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVT 181

Query: 183 CTEERGYPIATYLPLIPTERIAKVFDE 209
                GY +  YLPL+P + I K +++
Sbjct: 182 DMTNMGYSLVGYLPLVPVDDIVKAYEK 208

Arabidopsis thaliana (taxid: 3702)

>sp|P15252|REF_HEVBR Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2

 Score = 85.9 bits (211), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 59/100 (59%)

Query: 11  ETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPI 70
           E   +   + LKYL FVQ AA Y +  FS VY +AK+ SGPL+PGV  +E  VK V  P+
Sbjct: 5   EDNQQGQGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPL 64

Query: 71  YEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ 110
           Y     +P   L+FVD  V  S+  ++R +P +VK AS Q
Sbjct: 65  YNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQ 104

May be part of the rubber biosynthesis machinery. Plays a role in rubber elongation.

Hevea brasiliensis (taxid: 3981)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225437316	248	PREDICTED: stress-related protein-like [	0.964	0.883	0.662	2e-80
15214303	248	RecName: Full=Stress-related protein gi|	0.964	0.883	0.662	3e-80
147774977	249	hypothetical protein VITISV_017032 [Viti	0.942	0.859	0.672	2e-79
297743862	222	unnamed protein product [Vitis vinifera]	0.947	0.968	0.678	2e-76
255582180	236	Small rubber particle protein, putative	0.977	0.940	0.604	1e-73
224064432	234	predicted protein [Populus trichocarpa]	0.960	0.931	0.623	1e-73
224123588	242	predicted protein [Populus trichocarpa]	0.916	0.859	0.513	9e-61
224125182	241	predicted protein [Populus trichocarpa]	0.942	0.887	0.516	2e-60
259019463	252	rubber elongation factor [Morus alba]	0.872	0.785	0.527	2e-60
255542728	241	Rubber elongation factor protein, putati	0.925	0.871	0.508	9e-60

>gi|225437316|ref|XP_002263944.1| PREDICTED: stress-related protein-like [Vitis vinifera]

 Score =  304 bits (779), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 183/243 (75%), Gaps = 24/243 (9%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SEAKQ  ET    +EKRLKYLDFVQVAAIY+IVCFS++YEYAKE+SGPLKPGVQ VE
Sbjct: 1   MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVKTV+GP+YE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS Q          
Sbjct: 60  GTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPE 119

Query: 111 -ARAMAFEVQRVGVVDAATTIMNSMY-----------SKYEQVAEQYALSAWRWLNRLPV 158
            A A+A EVQR GVVD A  I  ++Y           SKYE VAEQYA+SAWR LNRLP+
Sbjct: 120 LALAVASEVQRAGVVDTAKNITKNVYSKYEPTAKELCSKYEPVAEQYAVSAWRSLNRLPL 179

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTVPI 217
           FPQVAQ+V+PTAA WSEKYNQ V  T ERGY +A YLPLIPTERIAKVF+E    PTV  
Sbjct: 180 FPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFEEASALPTVET 239

Query: 218 DGK 220
           +G 
Sbjct: 240 NGN 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15214303|sp|Q9SW70.1|SRP_VITRI RecName: Full=Stress-related protein gi|5802955|gb|AAD51854.1|AF178990_1 stress related protein [Vitis riparia]

 Score =  303 bits (776), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/243 (66%), Positives = 183/243 (75%), Gaps = 24/243 (9%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SEAKQ  ET    +EKRLKYLDFVQVAAIY+IVCFS++YEYAKE+SGPLKPGVQ VE
Sbjct: 1   MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVKTV+GP+YE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS Q          
Sbjct: 60  GTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPE 119

Query: 111 -ARAMAFEVQRVGVVDAATTIMNSMY-----------SKYEQVAEQYALSAWRWLNRLPV 158
            A A+A EVQR GVVD A  I  ++Y           SKYE VAEQYA+SAWR LNRLP+
Sbjct: 120 LALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPL 179

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTVPI 217
           FPQVAQ+V+PTAA WSEKYNQ V  T ERGY +A YLPLIPTERIAKVF +G   PTV  
Sbjct: 180 FPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSALPTVET 239

Query: 218 DGK 220
           +G 
Sbjct: 240 NGN 242

Source: Vitis riparia

Species: Vitis riparia

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147774977|emb|CAN59911.1| hypothetical protein VITISV_017032 [Vitis vinifera]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/238 (67%), Positives = 180/238 (75%), Gaps = 24/238 (10%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SEAKQ  ET    +EKRLKYLDFVQVAAIY+IVCFS++YEYAKE+SGPLKPGVQ VE
Sbjct: 1   MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVKTV+GP+YE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS Q          
Sbjct: 60  GTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPE 119

Query: 111 -ARAMAFEVQRVGVVDAATTIMNSMY-----------SKYEQVAEQYALSAWRWLNRLPV 158
            A A+A EVQR GVVD A  I  ++Y           SKYE VAEQYA+SAWR LNRLP+
Sbjct: 120 LALAVASEVQRAGVVDTAKNITKNVYSKYEPTAKELCSKYEPVAEQYAVSAWRSLNRLPL 179

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTV 215
           FPQVAQ+V+PTAA WSEKYNQ V  T ERGY +A YLPLIPTERIAKVF E    PTV
Sbjct: 180 FPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQEASALPTV 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743862|emb|CBI36832.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/221 (67%), Positives = 174/221 (78%), Gaps = 6/221 (2%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SEAKQ  ET    +EKRLKYLDFVQVAAIY+IVCFS++YEYAKE+SGPLKPGVQ VE
Sbjct: 1   MAESEAKQQPET-VHGEEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQR 120
            TVKTV+GP+YE  +DVPFELL FVDRKVE S+ ELERHVPSLVK+AS QA  +A +   
Sbjct: 60  GTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPE 119

Query: 121 VGVVDAATTIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQL 180
           + +   A      + SKYE VAEQYA+SAWR LNRLP+FPQVAQ+V+PTAA WSEKYNQ 
Sbjct: 120 LALAPTA----KELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQS 175

Query: 181 VRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTVPIDGK 220
           V  T ERGY +A YLPLIPTERIAKVF+E    PTV  +G 
Sbjct: 176 VSYTAERGYTVALYLPLIPTERIAKVFEEASALPTVETNGN 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582180|ref|XP_002531884.1| Small rubber particle protein, putative [Ricinus communis] gi|223528492|gb|EEF30521.1| Small rubber particle protein, putative [Ricinus communis]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/235 (60%), Positives = 175/235 (74%), Gaps = 13/235 (5%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SE ++LT    + D+K+LKYLDFVQ AA+Y++ CFS++YEYAKE+SGPLKPGV+ VE
Sbjct: 1   MAESEVEELTLLVPD-DDKKLKYLDFVQAAAVYVLACFSSIYEYAKENSGPLKPGVKTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQR 120
           ATVKTV+GP+Y+   D+PFEL +FVDRK+E  LGEL R VPSLVK AS+QAR++A EVQR
Sbjct: 60  ATVKTVIGPVYDKFRDIPFELFKFVDRKIENFLGELGRLVPSLVKHASNQARSVACEVQR 119

Query: 121 VGVVDAATTIMN-----------SMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPT 169
            GVVDAA  I              +Y  YE VAE YA+S WR LNRLP+FPQ AQI +PT
Sbjct: 120 AGVVDAAKNIAKRVYEMYEPMAWELYCMYEPVAEHYAVSVWRCLNRLPLFPQAAQIAVPT 179

Query: 170 AACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPT-PTVPIDGKIET 223
           AA WSEKYN++V  T +RGYP A YLPLIP E IAKVFD G   PT+  +G+  T
Sbjct: 180 AAYWSEKYNEIVCYTADRGYPAAAYLPLIPIEWIAKVFDGGVNGPTISSNGEAVT 234

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064432|ref|XP_002301473.1| predicted protein [Populus trichocarpa] gi|222843199|gb|EEE80746.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/231 (62%), Positives = 173/231 (74%), Gaps = 13/231 (5%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++SE KQ  E   E DEK LKYLDFVQ+AAIY++VCFS+VY YAKE+SGPLKPGV+ VE
Sbjct: 1   MAESEPKQPAEM-VEGDEKNLKYLDFVQMAAIYMVVCFSSVYRYAKENSGPLKPGVRTVE 59

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQR 120
            TV+TV+GP+ +  + VPF+LL+FVD K++ESL  L+R VPS VK+ S QARA+A+E+QR
Sbjct: 60  DTVRTVIGPVCDKFYGVPFQLLKFVDHKIDESLRGLDRQVPSQVKRVSIQARAVAYEIQR 119

Query: 121 VGVVDAATTIMNSMYS-----------KYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPT 169
            GVVDAA  I  +MYS           KYE VAEQYA+ AWR LNRLP+FPQVAQI +PT
Sbjct: 120 TGVVDAAMNITKTMYSKYEPTARELYYKYEPVAEQYAVLAWRSLNRLPLFPQVAQIAVPT 179

Query: 170 AACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG-PTPTVPIDG 219
           AA WSEKYNQ+V    E GY IA YLPLIP ERI+KVFDE    P V  +G
Sbjct: 180 AAFWSEKYNQVVGSAAEEGYTIALYLPLIPIERISKVFDESIGEPVVSTNG 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123588|ref|XP_002330158.1| predicted protein [Populus trichocarpa] gi|118483115|gb|ABK93466.1| unknown [Populus trichocarpa] gi|222871614|gb|EEF08745.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (609), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 162/230 (70%), Gaps = 22/230 (9%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++++     +   E +E+RLKYL FVQVAA++ ++ F+ +Y YAK+ +GPLKPGV+ VE
Sbjct: 1   MAENDVNMQQQLDKEEEERRLKYLQFVQVAAVHAVLTFTNLYIYAKDKAGPLKPGVETVE 60

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVK+V+GP+Y+   +VP E+L+FVDRKV+ES+  ++ HVP LVKQ SS+          
Sbjct: 61  GTVKSVVGPVYDKFREVPIEVLKFVDRKVDESVTNMDNHVPPLVKQVSSRALLAAQNAPV 120

Query: 111 -ARAMAFEVQRVGVVDAATTIMNSMYSKYEQV-----------AEQYALSAWRWLNRLPV 158
            ARA+A EVQR GV + A+ +  S+YSKYE             AEQ A+SAWR LN+LP+
Sbjct: 121 AARAVASEVQRAGVKETASELAKSVYSKYEPTAKELYSKYEPKAEQAAVSAWRKLNQLPL 180

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFD 208
           FPQVAQ+V+PTAA  SEKYNQ +  T E+GY ++ YLPL+PTE+IAKVF 
Sbjct: 181 FPQVAQVVVPTAAFCSEKYNQTILSTAEKGYKVSLYLPLVPTEKIAKVFS 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125182|ref|XP_002319520.1| predicted protein [Populus trichocarpa] gi|222857896|gb|EEE95443.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (606), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 163/236 (69%), Gaps = 22/236 (9%)

Query: 1   MSDSEAKQLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVE 60
           M++++     +   E +E+RLKYL FVQVAA++ ++ F+ +Y YAK+ +GPLKPGV+ VE
Sbjct: 1   MAENDVNMQQQLAREEEERRLKYLQFVQVAAVHAVLTFTNLYIYAKDKAGPLKPGVETVE 60

Query: 61  ATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ---------- 110
            TVK+V+G +Y+   DVP E+L+FVDRKV+ES+  L+ HVP LVKQ S Q          
Sbjct: 61  GTVKSVVGLVYDKFRDVPIEVLKFVDRKVDESVTSLDTHVPPLVKQVSFQALSAAQNAPV 120

Query: 111 -ARAMAFEVQRVGVVDAATTIMNS-----------MYSKYEQVAEQYALSAWRWLNRLPV 158
            ARA+A EVQR GV   A+ +  +           +YSKYE  AEQ A+SAWR LN+LP+
Sbjct: 121 AARAVASEVQRSGVKGTASELAKTVYAKYEPTAKELYSKYEPKAEQAAVSAWRKLNKLPL 180

Query: 159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPT 214
           FPQVAQ+V+PTAA  SEKYNQ V  T E+GY +++YLPL+PTE+IAKVF E P  T
Sbjct: 181 FPQVAQVVVPTAAFCSEKYNQTVVSTAEKGYRVSSYLPLVPTEKIAKVFGEVPEST 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259019463|gb|ACV90044.1| rubber elongation factor [Morus alba]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 116/220 (52%), Positives = 159/220 (72%), Gaps = 22/220 (10%)

Query: 13  RTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYE 72
           + +A+E+RLKYL+F+QVA I+ IV  S +Y  AKE SGPLKPGV+ VE TVK+V+GP+YE
Sbjct: 14  KDKAEEQRLKYLEFIQVAVIHTIVYLSNLYGKAKEKSGPLKPGVETVEGTVKSVVGPVYE 73

Query: 73  DLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ-----------ARAMAFEVQRV 121
            ++D+P ELL+F+DRKV+ S+ EL+RHVP+ +KQ SSQ           AR++A EVQR 
Sbjct: 74  KVYDIPIELLKFIDRKVDASVTELDRHVPATLKQVSSQAFSAAQKAPEVARSLASEVQRA 133

Query: 122 GVVDAATTIMNS-----------MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTA 170
           GV D A+ I  +           +Y+KYE  AEQ A++AWR LN+LP+FP+VA +V+PTA
Sbjct: 134 GVKDTASGIAKTVFTKYEPAAKELYAKYEPKAEQCAVTAWRKLNQLPLFPKVADVVVPTA 193

Query: 171 ACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210
           A ++EKYNQ V  T E+GY +++YLPL+P E+I KVF E 
Sbjct: 194 AYYTEKYNQTVISTAEKGYKVSSYLPLVPVEKIVKVFSEN 233

Source: Morus alba

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542728|ref|XP_002512427.1| Rubber elongation factor protein, putative [Ricinus communis] gi|223548388|gb|EEF49879.1| Rubber elongation factor protein, putative [Ricinus communis]

 Score =  235 bits (600), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 118/232 (50%), Positives = 164/232 (70%), Gaps = 22/232 (9%)

Query: 8   QLTETRTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVL 67
            L +   + +E+RLKYL+FVQVAA++ ++ F+ +Y YAK+ +GPLKPGV+ VE TVK+V+
Sbjct: 7   NLQQQMAKENEERLKYLEFVQVAALHAVMTFANLYVYAKDKAGPLKPGVETVEGTVKSVV 66

Query: 68  GPIYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQ-----------ARAMAF 116
           GP+Y+  HDVP E+L+FVDRKV+ES+ +L+R VP +VKQ S+Q           ARA+A 
Sbjct: 67  GPVYDKFHDVPIEVLKFVDRKVDESVTKLDRRVPPVVKQVSAQAYSVAREAPVAARAVAS 126

Query: 117 EVQRVGVVDAATTIMNS-----------MYSKYEQVAEQYALSAWRWLNRLPVFPQVAQI 165
           EVQR GV + A+ +  +           +YSKYE  AEQ A+SAWR LN+LP+FPQVAQ+
Sbjct: 127 EVQRTGVKETASGLAKTLYAMYEPKAKELYSKYEPKAEQCAVSAWRKLNQLPLFPQVAQV 186

Query: 166 VIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEGPTPTVPI 217
            +PTAA  SEKYNQ V  T E+GY +++YLPL+PT++IA+VF      + PI
Sbjct: 187 FVPTAAYCSEKYNQTVVSTAEKGYRVSSYLPLVPTQKIAQVFRNEVPESAPI 238

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2043373	235	AT2G47780 "AT2G47780" [Arabido	0.850	0.821	0.569	8.6e-56
TAIR|locus:2079782	246	AT3G05500 [Arabidopsis thalian	0.585	0.540	0.503	2.9e-32
TAIR|locus:2019579	240	AT1G67360 [Arabidopsis thalian	0.876	0.829	0.338	8.2e-28

TAIR|locus:2043373 AT2G47780 "AT2G47780" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/193 (56%), Positives = 144/193 (74%)

Query:    17 DEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHD 76
             DE +LK+L+F+QVAA+Y   CFST+YE AK+++GPLK GV+ +E  V+TVL P+YE  HD
Sbjct:    37 DEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHD 96

Query:    77 VPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVGVVDAATTIMNSMYS 136
             VPF+LL FVDRKV++   ++E +VPSLVKQASSQA  +A EVQR GVVD   +I  S+  
Sbjct:    97 VPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRD 156

Query:   137 KYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLP 196
             KYE  AE YA + WR LN+LP+FP+VA +VIPTA  WSEKYN  VR   +R Y  A YLP
Sbjct:   157 KYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLP 216

Query:   197 LIPTERIAKVFDE 209
             +IP E+I+ + ++
Sbjct:   217 MIPIEKISDILEQ 229

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2079782 AT3G05500 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/145 (50%), Positives = 105/145 (72%)

Query:    14 TEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYED 73
             T+ +++RLKYL FVQ AA+  ++ F+ +Y  AK+ SGPLKPGV++VE  VKTV+GP+YE 
Sbjct:    15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query:    74 LHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQA-----------RAMAFEVQRVG 122
              HDVP E+L+++D+KV+ S+ EL+R VP +VKQ S+QA           RA+A EV+R G
Sbjct:    75 YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query:   123 VVDAATTIMNSMYSKYEQVAEQ-YA 146
             VV+ A+ +  S+YSKYE  A++ YA
Sbjct:   135 VVETASGMAKSVYSKYEPAAKELYA 159

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2019579 AT1G67360 [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 70/207 (33%), Positives = 110/207 (53%)

Query:    11 ET-RTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGP 69
             ET +  + E  LK+L FV++A I+I+   S +YEYAK++SGPLK  V+ VE  V TV+ P
Sbjct:     2 ETEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTP 61

Query:    70 IYEDLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQARAMAFEVQRVG---VVDA 126
             +Y+   DVP  LL F+D KV E   + + H P + K+  +QA  + ++        V +A
Sbjct:    62 VYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEA 121

Query:   127 AT----TIMNSMYSKYEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEKYNQLVR 182
              T       N   ++Y+      ++  W  LN+      +    +P AA +S +YN LV 
Sbjct:   122 RTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVT 181

Query:   183 CTEERGYPIATYLPLIPTERIAKVFDE 209
                  GY +  YLPL+P + I K +++
Sbjct:   182 DMTNMGYSLVGYLPLVPVDDIVKAYEK 208


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      227       227   0.00079  113 3  11 22  0.41    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  167 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Total cpu time:  20.01u 0.08s 20.09t   Elapsed:  00:00:01
  Start:  Mon May 20 21:54:48 2013   End:  Mon May 20 21:54:49 2013

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SW70	SRP_VITRI	No assigned EC number	0.6625	0.9647	0.8830	N/A	no
O82246	Y2778_ARATH	No assigned EC number	0.5612	0.8634	0.8340	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00021740 hypothetical protein (234 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
pfam05755	216	pfam05755, REF, Rubber elongation factor protein (	1e-92

>gnl|CDD|218733 pfam05755, REF, Rubber elongation factor protein (REF)

 Score =  270 bits (692), Expect = 1e-92
 Identities = 138/214 (64%), Positives = 167/214 (78%), Gaps = 16/214 (7%)

Query: 13  RTEADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYE 72
           +   +E+RLKYL+FVQVAAIY + CFST+YEYAK++SGPLKPGV  VE  VKTV+GP+YE
Sbjct: 2   KENGEEERLKYLEFVQVAAIYAVACFSTLYEYAKDNSGPLKPGVDTVEGAVKTVVGPVYE 61

Query: 73  DLHDVPFELLEFVDRKVEESLGELERHVPSLVKQASSQA-----------RAMAFEVQRV 121
             HDVP ELL+FVDRKV++S+ EL+RHVP LVKQAS+QA           RA+A EV+R 
Sbjct: 62  KFHDVPLELLKFVDRKVDDSVTELDRHVPPLVKQASAQAYSVAQKAPEVARAVASEVRRT 121

Query: 122 GVVDAATTIMNSMYSK-----YEQVAEQYALSAWRWLNRLPVFPQVAQIVIPTAACWSEK 176
           GVV+ A  I  S+YSK     YE VAEQYA+SAWR LN+LP+FPQVAQ+V+PTAA WSEK
Sbjct: 122 GVVETAKGIAKSVYSKYLYTNYEPVAEQYAVSAWRSLNQLPLFPQVAQVVVPTAAYWSEK 181

Query: 177 YNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG 210
           YN  VR T E+GY +A+YLPL+PTERIAKVF E 
Sbjct: 182 YNDAVRYTAEKGYAVASYLPLVPTERIAKVFGEE 215

This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences. REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown. Length = 216

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
PF05755	216	REF: Rubber elongation factor protein (REF); Inter	100.0

>PF05755 REF: Rubber elongation factor protein (REF); InterPro: IPR008802 This family consists of the highly related rubber elongation factor (REF), small rubber particle protein (SRPP) and stress-related protein (SRP) sequences

Probab=100.00  E-value=3e-96  Score=639.11  Aligned_cols=196  Identities=66%  Similarity=1.086  Sum_probs=190.4

Q ss_pred             hhhhhcccchhHHHHHHHHHHHHHHHHHHHhhhcCCCCCccchhhhhhccccccccccccccChhhhHHhhccccccchh
Q 027165           15 EADEKRLKYLDFVQVAAIYIIVCFSTVYEYAKESSGPLKPGVQAVEATVKTVLGPIYEDLHDVPFELLEFVDRKVEESLG   94 (227)
Q Consensus        15 ~~ee~~LKyL~FVq~Aai~a~v~~S~lY~yAKenSGPLkpgV~tVE~tVktVVgPVY~Kf~~vP~elL~FvDrKVDesv~   94 (227)
                      +++|++||||||||+|+||+++|||+||+|||||||||||||+|||||||||+||||+||||+|+|+|+|+|||||++++
T Consensus         4 ~~~e~~LKyL~FVq~Aai~a~~~~s~lY~yAK~~sGPLkpgV~tVE~tVktVv~PVy~Kf~~vP~~vL~fvDrKVD~~~~   83 (216)
T PF05755_consen    4 EEEEKRLKYLGFVQAAAIQALVCFSNLYEYAKENSGPLKPGVDTVEGTVKTVVGPVYDKFHDVPFEVLKFVDRKVDESVT   83 (216)
T ss_pred             ccchhccchhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHhhHhhhcchHHHHhccCcHHHHHHHhhhHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCChhhhhhhHHH-----------HHHHHHHHhhhhhhHHHHHHHHHH-----hhhHHHHHHHHHHHHHHhcCCCC
Q 027165           95 ELERHVPSLVKQASSQA-----------RAMAFEVQRVGVVDAATTIMNSMY-----SKYEQVAEQYALSAWRWLNRLPV  158 (227)
Q Consensus        95 ~ld~~vPp~vKq~s~QA-----------r~vvsEv~~~Gv~~aa~~~A~~vy-----~kyEp~ae~~av~aW~kLn~lPl  158 (227)
                      +||+|+||++||+|+||           |++++|+|++|+++||+++|+++|     ++|||+||+|++++|++|||||+
T Consensus        84 ~~d~~vPp~vKqvs~Qa~~~~~~ape~ar~vvsevq~~Gv~~aa~~~A~~v~~k~ly~~yEp~Ae~~av~aW~~Ln~lP~  163 (216)
T PF05755_consen   84 KLDRHVPPVVKQVSSQAYSAAQKAPEKAREVVSEVQRAGVVEAAKGIAKTVYAKDLYTKYEPVAEQYAVSAWRKLNQLPL  163 (216)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999           459999999999999999999875     55999999999999999999999


Q ss_pred             hhhhhhhhcchhhHHHHHHHHHHHhhhhcCcceeeeccCcchhHHHHhhcCC
Q 027165          159 FPQVAQIVIPTAACWSEKYNQLVRCTEERGYPIATYLPLIPTERIAKVFDEG  210 (227)
Q Consensus       159 fpqva~~~vPtAa~~seKYN~~V~~~a~kgy~va~YLPlVP~EkIak~f~~~  210 (227)
                      ||||+++++|||+|||||||++|.+|++|||++++||||||||||+|+|+++
T Consensus       164 ~p~va~~avPtAa~~seKYN~~V~~~a~kgy~~a~ylPlvP~e~I~k~f~~~  215 (216)
T PF05755_consen  164 FPQVAQVAVPTAAYWSEKYNHAVKDMAEKGYRVAGYLPLVPIEKIAKAFKQE  215 (216)
T ss_pred             chhHHHhccchHHHHHHHHHHHHHHHHcCCCceeeecCcCcHHHHHHHHccC
Confidence            9999999999999999999999999999999999999999999999999876

REF and SRPP are released from the rubber particle membrane into the cytosol during osmotic lysis of the sedimentable organelles (lutoids). The exact function of this family is unknown [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00