Citrus Sinensis ID: 027168

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccEEEEEEEEEEEEccccEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEEEEEccEEEEEEEEEccccEEEEEEccccEEEEEEHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHcccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEEccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccEccccccccEEEEEEEEEEEEccccEEEEEEcccccccccccccccEEEEEEcccEEEEEEEEEEEcccEEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHcHHHHcccccccEEEEEEEcccEEEEcccccccccccccHEEEEcHcHHcccEEEEEEccc
Coil and Loop (DISEMBL)
mnteviptklDYYDNMLKLQSTSKLISyfkgddgrRALILEStifhpqgggqpsdtgFIIVADSDFKFIVHDVRSKDGIVFHYGVvensggefemeLEKGKEVRLWVDESRRklnsrpyveykgsvpqnelqSKTKELELEANALISRGGKVMVAVLPYEeasmlcggclphyipqgstprivklgdnpgcpcggthvsDISEIISMKVSQIRTKKGTTKVFYSVGS
Flexible Loop (DISEMBL)
mnteviptkldyydNMLKLQSTSKLISYFKGDDGRRALILESTIfhpqgggqpSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDesrrklnsrpyveykgsvpqnelqsKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIIsmkvsqirtkkgttkvfysvgs
Low Complexity Region (SEG)
MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Disordered region (IsUnstruct)
*****IPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVD*********************************ANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFY****
Disordered Region (DISOPRED)
***EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Disordered Region (DISEMBL)
MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Disordered Region (DISPRO)
**TEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPxxxxxxxxxxxxxxxxxxxxxGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q8PWU0	926	Alanine--tRNA ligase OS=M	yes	no	0.916	0.224	0.254	9e-15
Q8TU79	925	Alanine--tRNA ligase OS=M	yes	no	0.911	0.223	0.272	4e-13
Q46CS0	923	Alanine--tRNA ligase OS=M	yes	no	0.911	0.224	0.256	1e-12
O57734	404	Alanyl-tRNA editing prote	yes	no	0.872	0.490	0.286	6e-12
Q971J4	904	Alanine--tRNA ligase OS=S	yes	no	0.942	0.236	0.266	6e-12
A0B6X3	913	Alanine--tRNA ligase OS=M	yes	no	0.876	0.217	0.260	6e-12
Q9HN24	929	Alanine--tRNA ligase OS=H	yes	no	0.955	0.233	0.276	2e-11
B0R7I0	929	Alanine--tRNA ligase OS=H	yes	no	0.955	0.233	0.276	2e-11
Q054G6	940	Alanine--tRNA ligase OS=L	yes	no	0.726	0.175	0.282	1e-10
Q04QG6	940	Alanine--tRNA ligase OS=L	yes	no	0.726	0.175	0.282	1e-10

>sp|Q8PWU0|SYA_METMA Alanine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=alaS PE=3 SV=1

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/251 (25%), Positives = 118/251 (47%), Gaps = 43/251 (17%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
           TK  +YD   +L+  + ++  F        ++L++T F+ +GGGQP+D G I+  D+ ++
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----VVLDNTFFYAEGGGQPADIGTIVAEDTVYR 565

Query: 68  FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
            +  DV+  +G++ H   +EN G   E+ + KG+ +   VDE RR   +R +        
Sbjct: 566 VV--DVQVYEGVILH--TIENPGK--ELAITKGELITGKVDEKRRMTLARHHTATHIVND 619

Query: 122 ----------YKGSVPQNELQSK-------------TKELELEANALISRGGKVMVAVLP 158
                     ++    + E  S+              +++EL AN  +    +V+   +P
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEEIRQIELLANRTVMENKRVVTEWMP 679

Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
             EA  + G G     +P G   RIVK+GD+    CGGTH +    I  +K+ +  R + 
Sbjct: 680 RTEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCTSTGIIGPIKILKTERIQD 738

Query: 217 GTTKVFYSVGS 227
           G  ++ ++ G+
Sbjct: 739 GVERIEFAAGT 749

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7

>sp|Q8TU79|SYA_METAC Alanine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=alaS PE=3 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 43/250 (17%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
           TK  +YD   +L+  + ++  F        ++L++T F+ +GGGQP+D G I V D  +K
Sbjct: 511 TKRRFYDEPTRLEFEAVVLDVFDNH-----IVLDNTFFYAEGGGQPADIGTISVGDIVYK 565

Query: 68  FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
            +  DV+  +G++ H   V+   GE  +E+ KG  +   VDE RR   +R +        
Sbjct: 566 VV--DVQVYEGVIVH--TVDIPDGE--LEITKGDIITGKVDERRRMTLARHHTATHIVND 619

Query: 122 ----------YKGSVPQNELQSKT-------------KELELEANALISRGGKVMVAVLP 158
                     ++    + E  S+              K++EL AN  +    +V+   +P
Sbjct: 620 AARKVLGKHIWQAGAQKFEDHSRLDLSHYKHISPEELKQIELLANRTVMENKRVITEWMP 679

Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
             EA  + G G     +P G   RIVK+GD+    CGGTH      I  +K+ +  R + 
Sbjct: 680 RIEAEQVYGFGLYQGGVPPGEKIRIVKVGDDVEA-CGGTHCLSTGVIGPIKILKTERIQD 738

Query: 217 GTTKVFYSVG 226
           G  +V ++ G
Sbjct: 739 GVERVEFAAG 748

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q46CS0|SYA_METBF Alanine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=alaS PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 113/250 (45%), Gaps = 43/250 (17%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
           TK  +YD   +L+  + ++  F  +     ++L++T F+ +GGGQP+D G I  A + +K
Sbjct: 511 TKRSFYDEPTRLEFEAVVLDIFDNN-----IVLDNTFFYAEGGGQPADMGTIATAYAVYK 565

Query: 68  FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE------ 121
            +  DV+  DG++ H   +EN  G   +++ KG  V   VDE RR   +R +        
Sbjct: 566 VV--DVQVYDGVIVH--TIENPDGN--LDIRKGDIVNGKVDEKRRMTLARHHTATHIVND 619

Query: 122 ----------YKGSVPQNELQSKT-------------KELELEANALISRGGKVMVAVLP 158
                     ++    + E  S+              K++EL AN ++    +V+   + 
Sbjct: 620 AARKVLGTHIWQAGAQKFEDHSRLDLSHYKHISPDELKQIELLANRMVMENKRVVTEWMS 679

Query: 159 YEEASMLCG-GCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKK 216
             EA    G G     +P G   R+VK+GD+    C GTH      +  +K+ +  R + 
Sbjct: 680 RTEAEQEYGFGLYQGGVPPGEKIRVVKVGDDVEA-CAGTHCVSTGVVGPIKILRTERIQD 738

Query: 217 GTTKVFYSVG 226
           G  +V ++ G
Sbjct: 739 GVERVEFAAG 748

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Methanosarcina barkeri (strain Fusaro / DSM 804) (taxid: 269797)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=alaXL PE=3 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 109/248 (43%), Gaps = 50/248 (20%)

Query: 12  YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
           YY +    +  +K++   K  D R  ++L+ TIF+P+GGGQP D G  ++  +DF+ +V 
Sbjct: 6   YYKDPYLREIDAKIVDVRKEKD-RVEVVLDRTIFYPEGGGQPGDRG--VIKGNDFEIMVE 62

Query: 72  DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNS--------------- 116
           D   K+G +FH G +    GE   E   G++V+L++D   R  N                
Sbjct: 63  DTIEKNGEIFHIGKLR---GEIPKE---GEKVKLYLDWEWRYGNMQMHTGQHILSAVLKK 116

Query: 117 ------------RPY--VEYKGSVPQNELQSKTKELELEANALISRGGKVMVA---VLPY 159
                       R Y  +E  G V  + ++      ELE N +I     V++     LP 
Sbjct: 117 LYDLDTTGFNIFRDYAKIEVNGEVNWDMIERA----ELEVNKIIINDLPVVIEEYDKLPE 172

Query: 160 EEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK-KGT 218
           E A  L               RIVK+GD    PCGGTHV    E+  +KV +   K K  
Sbjct: 173 EIALKLRKNV----TKVKEKIRIVKIGDVDVTPCGGTHVKSTREVGIIKVLRFYKKSKNL 228

Query: 219 TKVFYSVG 226
            ++ ++ G
Sbjct: 229 WRIEFTCG 236

Functions in trans to edit the amino acid moiety from mischarged charged tRNA(Ala).

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

>sp|Q971J4|SYA_SULTO Alanine--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=alaS PE=3 SV=1

 Score = 71.2 bits (173), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 30/244 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTK  YY++  K   T+K++S +K       L+L+ T F+P+GGGQ  DTG II  +   
Sbjct: 504 PTKKLYYEDQYKRSFTAKVVSVYKN-----YLVLDQTTFYPEGGGQIGDTG-IIKDEKGN 557

Query: 67  KFIVHDVRSKDGIVFHYGVVENS---GGEFEMELEKGKEVRLW---------VDESRRKL 114
            + V D +    ++FH    E S   G E   E++  +  R+          +  +R+ L
Sbjct: 558 TYQVVDTQKVKDVIFHILDKEPSLKEGDEVYGEIDWQRRYRIMKHHTVTHVILSAARKVL 617

Query: 115 NSRPYVEYKGSVPQN----------ELQSKTKELELEANALISRGGKVMVAVLPYEEASM 164
               +       PQ             + + K++E  AN +I+    V   ++   EA M
Sbjct: 618 GEHVWQAGAEKTPQKGRLDITHYKLPTEEEIKKIEDLANYIINDRRSVRPLIINRTEAEM 677

Query: 165 LCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTKVF 222
             G  +    +P+G+  R++++ D     CGGTH+S+ SEI ++K+  + + + G  ++ 
Sbjct: 678 KYGVSIYAGGVPEGADVRLIEIKDWDIEGCGGTHLSNTSEIGALKIINVEKIQDGVIRLE 737

Query: 223 YSVG 226
           Y  G
Sbjct: 738 YVAG 741

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|A0B6X3|SYA_METTP Alanine--tRNA ligase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=alaS PE=3 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/246 (26%), Positives = 113/246 (45%), Gaps = 47/246 (19%)

Query: 12  YYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
           +Y      +  + ++  F+G     +++L+ T+F+P+GGGQP+D G ++V D    F V+
Sbjct: 508 FYYRPFDQEFDATVLGIFEG-----SVVLDRTLFYPEGGGQPADRG-VLVRDGQV-FNVN 560

Query: 72  DVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVE---------- 121
           DV+  DG+V H   VE  G      L  G  V   +D  RR  ++R +            
Sbjct: 561 DVQMIDGVVLHR--VEQEG------LSPGDRVTGRIDMRRRMAHARHHTATHIVNDSAKR 612

Query: 122 ------YKGSVPQNELQSK-------------TKELELEANALISRGGKVMVAVLPYEEA 162
                 ++    ++E +++              K +ELEAN  +     V+   +P EEA
Sbjct: 613 VLGRHVWQAGAQKSEDRARLDISHYRRISDEELKAIELEANRRVMEMIPVITEFMPREEA 672

Query: 163 SMLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGTTK 220
             L G  L    +P G   R+V++G +    C GTHV++   I  +K+ +  R + G  +
Sbjct: 673 ERLFGFQLYQGGVPPGREIRVVRVGSDIEA-CAGTHVTNTGMIGPIKILRTERVQDGVER 731

Query: 221 VFYSVG 226
           + ++ G
Sbjct: 732 IEFAAG 737

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9HN24|SYA_HALSA Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=alaS PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 29/246 (11%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
           T+  YYD+    +  + ++  F+  G+DG  A  ++L+ T+F+P+GGGQP+DTG  ++  
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572

Query: 64  SDFKFIVHDVRSKDGIVFHYGVVENSGGEF---EMELEKGKEV--------------RLW 106
            D    V DV+ +DG+V H        GEF   +++ E+ + +              R  
Sbjct: 573 DDHTVDVIDVQERDGVVLHRTTDNPGKGEFVRGQIDTERRRRLMAHHTATHIVVYAARQV 632

Query: 107 VDESRRKLNSRPYVE-YKGSVPQNEL--QSKTKELELEANALISRGGKVMVAVLPYEEAS 163
           + E  R+  ++  V+  +  V   E   +   KE+E  AN ++     V        EA 
Sbjct: 633 LGEHVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAE 692

Query: 164 MLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-SQIRTKKGTTKV 221
              G  L    IP G   R+V + D+    CGGTHV+   EI S+K+ +  R + G  ++
Sbjct: 693 AEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILNAERVQDGVERL 751

Query: 222 FYSVGS 227
            ++ G+
Sbjct: 752 TFAAGA 757

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) (taxid: 64091)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|B0R7I0|SYA_HALS3 Alanine--tRNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=alaS PE=3 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 68/246 (27%), Positives = 117/246 (47%), Gaps = 29/246 (11%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFK--GDDGRRA--LILESTIFHPQGGGQPSDTGFIIVAD 63
           T+  YYD+    +  + ++  F+  G+DG  A  ++L+ T+F+P+GGGQP+DTG  ++  
Sbjct: 515 TETLYYDDAYGSEFEAVVLDVFEREGEDGDGAFDVVLDQTMFYPEGGGQPADTG--VLTG 572

Query: 64  SDFKFIVHDVRSKDGIVFHYGVVENSGGEF---EMELEKGKEV--------------RLW 106
            D    V DV+ +DG+V H        GEF   +++ E+ + +              R  
Sbjct: 573 DDHTVDVIDVQERDGVVLHRTTDNPGKGEFVRGQIDTERRRRLMAHHTATHIVVYAARQV 632

Query: 107 VDESRRKLNSRPYVE-YKGSVPQNEL--QSKTKELELEANALISRGGKVMVAVLPYEEAS 163
           + E  R+  ++  V+  +  V   E   +   KE+E  AN ++     V        EA 
Sbjct: 633 LGEHVRQAGAQKGVDSSRIDVTHYERVDRETVKEIERVANEIVRANTSVQCEWPDRHEAE 692

Query: 164 MLCGGCLPH-YIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV-SQIRTKKGTTKV 221
              G  L    IP G   R+V + D+    CGGTHV+   EI S+K+ +  R + G  ++
Sbjct: 693 AEYGFDLYQGGIPAGEQIRLVHVDDDVQA-CGGTHVARTGEIGSIKILNAERVQDGVERL 751

Query: 222 FYSVGS 227
            ++ G+
Sbjct: 752 TFAAGA 757

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) (taxid: 478009)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q054G6|SYA_LEPBL Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=alaS PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 26/191 (13%)

Query: 37  ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENS----GGE 92
           A++L  T F+P+GGGQ  DTGF+    + FK  V D + ++ ++ H+G V +       E
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLSGEFSIAQE 564

Query: 93  FEMELEKGKEVRLWVDES-------------------RRKLNSRPYVEYKGSVPQNELQS 133
            E E+E  +  RL    S                   +  + S  Y+ +  S P      
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624

Query: 134 KTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPC 193
           + +++E   N  I +   V+   LP E+A  + G         G   R+V++GD     C
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQMGDASVEFC 683

Query: 194 GGTHVSDISEI 204
           GGTHVS   EI
Sbjct: 684 GGTHVSHTGEI 694

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) (taxid: 355276)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q04QG6|SYA_LEPBJ Alanine--tRNA ligase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=alaS PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 84/191 (43%), Gaps = 26/191 (13%)

Query: 37  ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENS----GGE 92
           A++L  T F+P+GGGQ  DTGF+    + FK  V D + ++ ++ H+G V +       E
Sbjct: 507 AIVLNKTPFYPEGGGQVGDTGFLRQGKNVFK--VLDTQKENDVILHFGEVLSGEFSIAQE 564

Query: 93  FEMELEKGKEVRLWVDES-------------------RRKLNSRPYVEYKGSVPQNELQS 133
            E E+E  +  RL    S                   +  + S  Y+ +  S P      
Sbjct: 565 LEAEVEAARRERLRFHHSGTHLLNGALRNLLGDHVLQKGSVVSPEYLRFDFSHPSALTSK 624

Query: 134 KTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPC 193
           + +++E   N  I +   V+   LP E+A  + G         G   R+V++GD     C
Sbjct: 625 EIRKIESWVNESIRKNYPVVTKELPIEDAKKI-GAVATFGEKYGDRVRVVQMGDASVEFC 683

Query: 194 GGTHVSDISEI 204
           GGTHVS   EI
Sbjct: 684 GGTHVSHTGEI 694

Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.

Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) (taxid: 355277)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
225432302	256	PREDICTED: alanyl-tRNA editing protein A	0.973	0.863	0.686	2e-93
297736873	243	unnamed protein product [Vitis vinifera]	0.933	0.872	0.683	4e-89
357478765	258	Alanyl-tRNA synthetase [Medicago truncat	1.0	0.879	0.624	3e-86
217072496	258	unknown [Medicago truncatula] gi|3884931	1.0	0.879	0.620	2e-85
297834538	256	ATP binding protein [Arabidopsis lyrata	0.973	0.863	0.626	9e-84
145332595	256	putative nucleotide binding protein [Ara	0.973	0.863	0.630	2e-83
363808238	262	uncharacterized protein LOC100781401 [Gl	0.973	0.843	0.600	8e-81
145361275	253	putative nucleotide binding protein [Ara	0.960	0.861	0.626	1e-80
388519037	256	unknown [Lotus japonicus]	0.973	0.863	0.642	5e-79
224107335	246	predicted protein [Populus trichocarpa]	0.916	0.845	0.648	3e-78

>gi|225432302|ref|XP_002273600.1| PREDICTED: alanyl-tRNA editing protein AlaX-L-like [Vitis vinifera]

 Score =  347 bits (890), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 173/252 (68%), Positives = 194/252 (76%), Gaps = 31/252 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKL YYD+M  LQS++ L+S+FKGDDGRRALIL+STIFHPQGGGQPSDTGFI +++SD 
Sbjct: 5   PTKLLYYDHMFLLQSSATLLSFFKGDDGRRALILDSTIFHPQGGGQPSDTGFIAISESDI 64

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           KFIV DVRSKDG+VFHYG +ENS  E E +LEKGKEV L VDESRRKLNSR         
Sbjct: 65  KFIVQDVRSKDGVVFHYGFIENSNEELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLD 124

Query: 118 ----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
                                 P+VEYKG VPQNELQ K KELEL+ANALISRGGKV   
Sbjct: 125 ICMRTVGLGNLEPGKGYHFPDGPFVEYKGVVPQNELQGKQKELELDANALISRGGKVSAV 184

Query: 156 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 215
           VLPY EA  LCGGCLP YIP+ S PRI+KLGDNPGCPCGGTHVSDISEIIS+KV+QIRTK
Sbjct: 185 VLPYAEAVELCGGCLPDYIPKSSNPRILKLGDNPGCPCGGTHVSDISEIISVKVTQIRTK 244

Query: 216 KGTTKVFYSVGS 227
           KG TKV+Y++GS
Sbjct: 245 KGVTKVYYTIGS 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736873|emb|CBI26074.3| unnamed protein product [Vitis vinifera]

 Score =  333 bits (853), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 166/243 (68%), Positives = 186/243 (76%), Gaps = 31/243 (12%)

Query: 16  MLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRS 75
           M  LQS++ L+S+FKGDDGRRALIL+STIFHPQGGGQPSDTGFI +++SD KFIV DVRS
Sbjct: 1   MFLLQSSATLLSFFKGDDGRRALILDSTIFHPQGGGQPSDTGFIAISESDIKFIVQDVRS 60

Query: 76  KDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR------------------ 117
           KDG+VFHYG +ENS  E E +LEKGKEV L VDESRRKLNSR                  
Sbjct: 61  KDGVVFHYGFIENSNEELESKLEKGKEVSLHVDESRRKLNSRLHSAGHLLDICMRTVGLG 120

Query: 118 -------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM 164
                        P+VEYKG VPQNELQ K KELEL+ANALISRGGKV   VLPY EA  
Sbjct: 121 NLEPGKGYHFPDGPFVEYKGVVPQNELQGKQKELELDANALISRGGKVSAVVLPYAEAVE 180

Query: 165 LCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYS 224
           LCGGCLP YIP+ S PRI+KLGDNPGCPCGGTHVSDISEIIS+KV+QIRTKKG TKV+Y+
Sbjct: 181 LCGGCLPDYIPKSSNPRILKLGDNPGCPCGGTHVSDISEIISVKVTQIRTKKGVTKVYYT 240

Query: 225 VGS 227
           +GS
Sbjct: 241 IGS 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478765|ref|XP_003609668.1| Alanyl-tRNA synthetase [Medicago truncatula] gi|355510723|gb|AES91865.1| Alanyl-tRNA synthetase [Medicago truncatula]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 161/258 (62%), Positives = 189/258 (73%), Gaps = 31/258 (12%)

Query: 1   MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
           M  +  PTKLDYYD+M  L ST+ L+S+FKGDDGR  LIL+ TIF+PQGGGQP+DTGF+I
Sbjct: 1   MEMDKSPTKLDYYDDMWNLHSTATLVSHFKGDDGRHVLILDRTIFYPQGGGQPADTGFLI 60

Query: 61  VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--- 117
           + DS+ KF+VHDVRSKDGIV HYGV E  GGEFE  LEKGKEV L VDE RRKLNSR   
Sbjct: 61  IHDSNIKFVVHDVRSKDGIVLHYGVFEGMGGEFEGTLEKGKEVSLSVDEDRRKLNSRLHS 120

Query: 118 ----------------------------PYVEYKGSVPQNELQSKTKELELEANALISRG 149
                                       P+VEYKG VPQNE+Q+K KELE+EANALIS G
Sbjct: 121 AGHLLDICLPKIGLGHLEPGKAYHFSDGPWVEYKGVVPQNEMQNKQKELEIEANALISMG 180

Query: 150 GKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
           GKV   +L Y+EA+ LCGG LP Y+P+ STPRIV++GDNPGCPCGGTHV D+S+I  +KV
Sbjct: 181 GKVSADILLYDEAAKLCGGILPDYVPKESTPRIVQIGDNPGCPCGGTHVLDVSDITKIKV 240

Query: 210 SQIRTKKGTTKVFYSVGS 227
           SQIR+KKG TKVFY+V S
Sbjct: 241 SQIRSKKGMTKVFYNVES 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072496|gb|ACJ84608.1| unknown [Medicago truncatula] gi|388493132|gb|AFK34632.1| unknown [Medicago truncatula]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/258 (62%), Positives = 188/258 (72%), Gaps = 31/258 (12%)

Query: 1   MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
           M  +  PTKLDYYD+M  L ST+ L+S+FKGDDGR  LIL+ TIF+PQGGGQP+DTGF+I
Sbjct: 1   MEMDKSPTKLDYYDDMWNLHSTATLVSHFKGDDGRHVLILDRTIFYPQGGGQPADTGFLI 60

Query: 61  VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--- 117
           + DS+ KF+VHDVRSKDGIV HYGV E  GGEFE  LEKGKEV L VDE RRKLN R   
Sbjct: 61  IHDSNIKFVVHDVRSKDGIVLHYGVFEGMGGEFEGTLEKGKEVSLSVDEDRRKLNFRLHS 120

Query: 118 ----------------------------PYVEYKGSVPQNELQSKTKELELEANALISRG 149
                                       P+VEYKG VPQNE+Q+K KELE+EANALIS G
Sbjct: 121 AGHLLDICLPKIGLGHLEPGKAYHFSDGPWVEYKGVVPQNEMQNKQKELEIEANALISMG 180

Query: 150 GKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
           GKV   +L Y+EA+ LCGG LP Y+P+ STPRIV++GDNPGCPCGGTHV D+S+I  +KV
Sbjct: 181 GKVSADILLYDEAAKLCGGILPDYVPKESTPRIVQIGDNPGCPCGGTHVLDVSDITKIKV 240

Query: 210 SQIRTKKGTTKVFYSVGS 227
           SQIR+KKG TKVFY+V S
Sbjct: 241 SQIRSKKGMTKVFYNVES 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834538|ref|XP_002885151.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330991|gb|EFH61410.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (807), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 158/252 (62%), Positives = 185/252 (73%), Gaps = 31/252 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKLDY+ +M  LQS S+ IS FK  DGR ALIL+ST+FHPQGGGQP+DTG I+ + SDF
Sbjct: 5   PTKLDYHVDMFNLQSQSRFISVFKAQDGRIALILDSTLFHPQGGGQPADTGLIVFSGSDF 64

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           KF V DVRSKDGIV HYGV E S  E  M++EKGKEV + VDESRRKLNSR         
Sbjct: 65  KFSVQDVRSKDGIVLHYGVFEGSNPESGMDIEKGKEVYVTVDESRRKLNSRLHSAGHLLD 124

Query: 118 ----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
                                 P+VEYKGSVPQ ++  K KELE EAN LI++GGKV  A
Sbjct: 125 LCMQKVGLGHLEPGKGYHFPDGPFVEYKGSVPQGQMAVKQKELEAEANDLITKGGKVYAA 184

Query: 156 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 215
           +LPYEEAS+LCGG LP YI +GSTPRI+KLGD+PGCPCGGTHVSD+S+II+MKV+Q+RTK
Sbjct: 185 ILPYEEASVLCGGNLPDYISKGSTPRIIKLGDSPGCPCGGTHVSDLSDIIAMKVTQMRTK 244

Query: 216 KGTTKVFYSVGS 227
           KG TKVFYS+ S
Sbjct: 245 KGITKVFYSIAS 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145332595|ref|NP_001078163.1| putative nucleotide binding protein [Arabidopsis thaliana] gi|332642317|gb|AEE75838.1| putative nucleotide binding protein [Arabidopsis thaliana]

 Score =  314 bits (805), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/252 (63%), Positives = 183/252 (72%), Gaps = 31/252 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKLDY+ +M  LQS S+ +S FK  DGR ALILEST+FHPQGGGQPSDTG I+ + SD 
Sbjct: 5   PTKLDYHVDMFNLQSHSRFLSLFKAQDGRIALILESTVFHPQGGGQPSDTGLIVFSGSDL 64

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           KF V DVRSKDGIV HYGV E S  E  ++ EKGKEV L VDESRRKLNSR         
Sbjct: 65  KFSVQDVRSKDGIVLHYGVFEGSNPESGIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLD 124

Query: 118 ----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
                                 P+VEYKGSVPQ E Q K KELE EAN LIS+GGKV  A
Sbjct: 125 MCMQKVGLGHLEPGKGYHFPDGPFVEYKGSVPQEEFQVKQKELEAEANELISKGGKVYAA 184

Query: 156 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 215
           +LPYEEAS+LCGG LP YI +GSTPRI+KLGD+PGCPCGGTHVS++S+IISMK++Q+RTK
Sbjct: 185 ILPYEEASVLCGGSLPDYISKGSTPRIIKLGDSPGCPCGGTHVSNLSDIISMKITQMRTK 244

Query: 216 KGTTKVFYSVGS 227
           KG TKVFY++ S
Sbjct: 245 KGMTKVFYTIAS 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808238|ref|NP_001242235.1| uncharacterized protein LOC100781401 [Glycine max] gi|255638817|gb|ACU19712.1| unknown [Glycine max]

 Score =  305 bits (782), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 152/253 (60%), Positives = 187/253 (73%), Gaps = 32/253 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKL+++D+M +L+ST+ L+S+ KGDDGR  L L+ TIF+PQGGGQP+DTGF+++   D 
Sbjct: 10  PTKLEHFDDMWRLESTATLLSHLKGDDGRHVLTLDRTIFYPQGGGQPADTGFVLIHGFDN 69

Query: 67  -KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR-------- 117
            KF+V DVRSKDGIVFHYG  EN GGEFE  LEKGKEV L+VD+ RRKLNSR        
Sbjct: 70  NKFLVSDVRSKDGIVFHYGFFENLGGEFEPTLEKGKEVSLFVDQPRRKLNSRLHSAGHLL 129

Query: 118 -----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMV 154
                                  P+VEYKG++ QNE+QSK K+LELEANALIS GGKV V
Sbjct: 130 DICLPRIGLGNLEPGKAYHFPDGPWVEYKGTISQNEMQSKQKDLELEANALISMGGKVSV 189

Query: 155 AVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT 214
            +LPY+EA+ LCGGCLP Y+P+ STPRIV++ DNPGCPCGGTHV+DIS+I  +KVSQIR+
Sbjct: 190 DILPYDEAAKLCGGCLPDYVPKESTPRIVRIRDNPGCPCGGTHVADISDIKQIKVSQIRS 249

Query: 215 KKGTTKVFYSVGS 227
           KKG TK +Y V S
Sbjct: 250 KKGLTKAYYYVES 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145361275|ref|NP_683570.3| putative nucleotide binding protein [Arabidopsis thaliana] gi|332642316|gb|AEE75837.1| putative nucleotide binding protein [Arabidopsis thaliana]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 158/252 (62%), Positives = 180/252 (71%), Gaps = 34/252 (13%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKLDY+ +M  LQS S+ +S FK  DGR ALILEST+FHPQGGGQPSDTG I+ + SD 
Sbjct: 5   PTKLDYHVDMFNLQSHSRFLSLFKAQDGRIALILESTVFHPQGGGQPSDTGLIVFSGSDL 64

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           KF V DVRSKDGIV HYGV E S  E  ++ EKGKEV L VDESRRKLNSR         
Sbjct: 65  KFSVQDVRSKDGIVLHYGVFEGSNPESGIDSEKGKEVYLTVDESRRKLNSRLHSAGHLLD 124

Query: 118 ----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
                                 P+VEYKGSVPQ E Q K KELE EAN LIS+GGKV  A
Sbjct: 125 MCMQKVGLGHLEPGKGYHFPDGPFVEYKGSVPQEEFQVKQKELEAEANELISKGGKVYAA 184

Query: 156 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 215
           +LPYEEAS+LCGG LP YI +GSTPRI+KLGD+PGCPCGGTHVS++S+IISMK   +RTK
Sbjct: 185 ILPYEEASVLCGGSLPDYISKGSTPRIIKLGDSPGCPCGGTHVSNLSDIISMK---MRTK 241

Query: 216 KGTTKVFYSVGS 227
           KG TKVFY++ S
Sbjct: 242 KGMTKVFYTIAS 253

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519037|gb|AFK47580.1| unknown [Lotus japonicus]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 162/252 (64%), Positives = 191/252 (75%), Gaps = 31/252 (12%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
           PTKLDYYD++  LQST+ L+S+FKGDDGR ALIL+ TIF+PQGGGQP+DTGFI +  SD 
Sbjct: 5   PTKLDYYDDIWMLQSTATLLSHFKGDDGRHALILDRTIFYPQGGGQPADTGFICIEGSDI 64

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           KF+VHDVRSKDGIVFHYG  EN GGE E+ LEKGKEV L+VDESRRKLNSR         
Sbjct: 65  KFVVHDVRSKDGIVFHYGDFENLGGEVELTLEKGKEVSLFVDESRRKLNSRLHSAGHLLD 124

Query: 118 ----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVA 155
                                 P+VEYKG +PQNE+Q+K K+LELEANALIS GGKV   
Sbjct: 125 ICLPRIGLGHLEPGKAYHFADGPWVEYKGVIPQNEIQNKQKDLELEANALISVGGKVSAD 184

Query: 156 VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTK 215
           +L Y+EA+ LCGGCLP Y+P+ STPRIV +G NPGCPCGGTHV+DIS+II +KVSQIR+K
Sbjct: 185 ILLYDEAAKLCGGCLPDYVPKESTPRIVTIGGNPGCPCGGTHVADISDIIQIKVSQIRSK 244

Query: 216 KGTTKVFYSVGS 227
           KG TKV+Y+V S
Sbjct: 245 KGQTKVYYNVES 256

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107335|ref|XP_002314450.1| predicted protein [Populus trichocarpa] gi|222863490|gb|EEF00621.1| predicted protein [Populus trichocarpa]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 157/242 (64%), Positives = 181/242 (74%), Gaps = 34/242 (14%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFI-IVADSDF 66
           TKLDYY +M KLQS + L+S+FKG+DGR ALIL+STIFHPQGGGQ +DTG I I ADS F
Sbjct: 6   TKLDYYHDMWKLQSKATLLSFFKGEDGRNALILDSTIFHPQGGGQLADTGVITIAADSSF 65

Query: 67  KFIVHDVRSKDGIVFHYGVVEN-SGGEFEMELEKGKEVRLWVDESRRKLNSR-------- 117
           KFIV DVRSKDGIV+HYGV+E  SG +FEME+ +G EV L+VDE+RRKLNSR        
Sbjct: 66  KFIVQDVRSKDGIVYHYGVIEEGSGKDFEMEVVRGGEVFLFVDEARRKLNSRLHSAGHLM 125

Query: 118 -----------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMV 154
                                  P+VEYKG++PQNELQSK  ELEL ANALISRGGKV  
Sbjct: 126 DACLEEVGLGHLEPGKGYHFPDGPFVEYKGTIPQNELQSKQHELELAANALISRGGKVSA 185

Query: 155 AVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT 214
           AVLPYEEA+ LCGG LP YIP+ STPR+VKLG++  C CGGTHVSDISEIIS++VSQIR 
Sbjct: 186 AVLPYEEAAELCGGFLPDYIPKDSTPRVVKLGNSAVC-CGGTHVSDISEIISLQVSQIRK 244

Query: 215 KK 216
           KK
Sbjct: 245 KK 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:504955757	256	AT3G16565 [Arabidopsis thalian	0.484	0.429	0.745	1.5e-81
UNIPROTKB|Q57984	892	alaS "Alanine--tRNA ligase" [M	0.405	0.103	0.342	1.1e-08
UNIPROTKB|Q46AR9	243	alaXM "Alanyl-tRNA editing pro	0.422	0.395	0.314	1.5e-08
TIGR_CMR|BA_1720	236	BA_1720 "alanyl-tRNA synthetas	0.211	0.203	0.431	1.6e-08
UNIPROTKB|O58035	915	alaS "Alanine--tRNA ligase" [P	0.374	0.092	0.329	2e-07
UNIPROTKB|O28029	906	alaS "Alanine--tRNA ligase" [A	0.330	0.082	0.341	5e-07
ASPGD|ASPL0000072203	283	AN11110 [Emericella nidulans (	0.145	0.116	0.542	7.6e-07
UNIPROTKB|Q97ZX2	236	alaXM "Alanyl-tRNA editing pro	0.392	0.377	0.320	2.8e-06
UNIPROTKB|O57848	216	alaXM "Alanyl-tRNA editing pro	0.383	0.402	0.351	3.8e-05
UNIPROTKB|Q8Q0A4	251	alaXM "Alanyl-tRNA editing pro	0.339	0.306	0.333	4e-05

TAIR|locus:504955757 AT3G16565 [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 1.5e-81, Sum P(2) = 1.5e-81
 Identities = 82/110 (74%), Positives = 97/110 (88%)

Query:   118 PYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQG 177
             P+VEYKGSVPQ E Q K KELE EAN LIS+GGKV  A+LPYEEAS+LCGG LP YI +G
Sbjct:   147 PFVEYKGSVPQEEFQVKQKELEAEANELISKGGKVYAAILPYEEASVLCGGSLPDYISKG 206

Query:   178 STPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSVGS 227
             STPRI+KLGD+PGCPCGGTHVS++S+IISMK++Q+RTKKG TKVFY++ S
Sbjct:   207 STPRIIKLGDSPGCPCGGTHVSNLSDIISMKITQMRTKKGMTKVFYTIAS 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004813 "alanine-tRNA ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

UNIPROTKB|Q57984 alaS "Alanine--tRNA ligase" [Methanocaldococcus jannaschii DSM 2661 (taxid:243232)]

 Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 36/105 (34%), Positives = 60/105 (57%)

Query:     8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
             T+L +Y+     +  +K++     DD    +IL+ T F+P+GGGQ +DTG+II  D  F+
Sbjct:   492 TELLFYEYPKMKEFEAKILRIV--DD---YVILDRTAFYPEGGGQKADTGYIIKGDKKFR 546

Query:    68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRR 112
              +  DV+ ++ IV+H   +EN   E    L++G  V+  +D  RR
Sbjct:   547 VV--DVQKENNIVYHK--IENLNDE----LKEGDIVKGVIDWKRR 583

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

UNIPROTKB|Q46AR9 alaXM "Alanyl-tRNA editing protein AlaX-M" [Methanosarcina barkeri str. Fusaro (taxid:269797)]

 Score = 114 (45.2 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 34/108 (31%), Positives = 58/108 (53%)

Query:    10 LDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFI 69
             LD Y  M + ++T + ++    DD  + ++L+ T+F+P+ GGQPSDTG ++      +F 
Sbjct:     8 LDCY--MKEFEATVEKVT----DD--KFVVLDRTVFYPESGGQPSDTGKLVRESDGAEFN 59

Query:    70 VHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR 117
             V  VR  +G + H    E  G      L+ G +V+ ++D  RR  + R
Sbjct:    60 VLYVRKFNGDISH----EIDGENVSNGLKAGDKVKGFIDWDRRYRHMR 103

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

TIGR_CMR|BA_1720 BA_1720 "alanyl-tRNA synthetase domain protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 102 (41.0 bits), Expect = 1.6e-08, Sum P(2) = 1.6e-08
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query:    33 DGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY 83
             +G +  + E T+F+P GGGQ  DTG +IV D  F F V  V+ + G + HY
Sbjct:    23 EGNKVFVKE-TVFYPTGGGQECDTG-VIVQDG-FVFEVEKVKKEQGEIVHY 70

GO:0004813 "alanine-tRNA ligase activity" evidence=ISS

GO:0006419 "alanyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|O58035 alaS "Alanine--tRNA ligase" [Pyrococcus horikoshii OT3 (taxid:70601)]

 Score = 105 (42.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query:     8 TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
             T+  YY++    +  +K++   K  D    +IL++T F+P+GGGQP DTG +IV   + K
Sbjct:   516 TRRLYYEDPFMKEFDAKVLRVIK--DW---VILDATAFYPEGGGQPYDTGVLIVNGREVK 570

Query:    68 FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGK 101
               V +V+    ++ H   VE+ G   E  +  GK
Sbjct:   571 --VTNVQKVGKVIIHK--VEDPGAFKEGMIVHGK 600

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

UNIPROTKB|O28029 alaS "Alanine--tRNA ligase" [Archaeoglobus fulgidus DSM 4304 (taxid:224325)]

 Score = 106 (42.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%)

Query:     1 MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
             +  E   T+  YYD+   L+  +++I   +GD     +IL  + F+P+ GGQ +D G++I
Sbjct:   497 LQNEYPATEKLYYDDPTLLEFEAEVIGV-EGD----FVILNRSAFYPESGGQDNDVGYLI 551

Query:    61 VADSDFKFIVHDVRSKDGIVFH 82
                   KF V DV   DG+V H
Sbjct:   552 ANGG--KFEVVDVLEADGVVLH 571

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IMP

GO:0006419 "alanyl-tRNA aminoacylation" evidence=IMP

GO:0006450 "regulation of translational fidelity" evidence=IMP

ASPGD|ASPL0000072203 AN11110 [Emericella nidulans (taxid:162425)]

 Score = 92 (37.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query:    37 ALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVH 71
             A+  + T+F+PQGGGQPSDTG I ++  D K I+H
Sbjct:    71 AVTTQQTVFYPQGGGQPSDTGIIAIS-FDGK-ILH 103

GO:0005737 "cytoplasm" evidence=IEA

GO:0043039 "tRNA aminoacylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016876 "ligase activity, forming aminoacyl-tRNA and related compounds" evidence=IEA

UNIPROTKB|Q97ZX2 alaXM "Alanyl-tRNA editing protein AlaX-M" [Sulfolobus solfataricus P2 (taxid:273057)]

 Score = 85 (35.0 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
 Identities = 34/106 (32%), Positives = 54/106 (50%)

Query:   131 LQSKTKELEL--EANALISRGGKVMVAVLPYEEASML-----CGGCLPHYIPQGSTPRIV 183
             +++K   +EL  EAN +I +  ++ +  LP EEA M+       G  P  IP     RIV
Sbjct:   135 VENKDTLIELINEANEIIKKDIELKIYFLPREEALMIPAIVKLAGRNPPQIPIW---RIV 191

Query:   184 KLGDNPGCPC---GGTHVSDISEIISMKVSQIRTK-KGTTKVFYSV 225
             ++   PG      GG HV +  EI  + + ++  K KG  +V+Y+V
Sbjct:   192 EI---PGIDIQADGGPHVKNTKEIGEIVLLKVENKGKGRKRVYYTV 234

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

UNIPROTKB|O57848 alaXM "Alanyl-tRNA editing protein AlaX-M" [Pyrococcus horikoshii OT3 (taxid:70601)]

 Score = 87 (35.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
 Identities = 38/108 (35%), Positives = 59/108 (54%)

Query:     9 KLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKF 68
             KL Y D  LK ++  +++     D+   A++L+ TIF+P GGGQP D G I   +     
Sbjct:     7 KLYYEDAYLK-EAKGRVLEI--RDN---AILLDQTIFYPTGGGQPHDRGTINGVE----- 55

Query:    69 IVHDV-RSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVD-ESRRKL 114
              V DV + ++G V+H  VV+    +F++    G EV L +D + R KL
Sbjct:    56 -VLDVYKDEEGNVWH--VVKEPE-KFKV----GDEVELKIDWDYRYKL 95

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IDA

GO:0006450 "regulation of translational fidelity" evidence=IDA

UNIPROTKB|Q8Q0A4 alaXM "Alanyl-tRNA editing protein AlaX-M" [Methanosarcina mazei Go1 (taxid:192952)]

 Score = 88 (36.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
 Identities = 27/81 (33%), Positives = 42/81 (51%)

Query:    38 LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEME- 96
             ++L+ T F+P+ GGQPSDTG ++      +F V      +G + H    E   GE   E 
Sbjct:    28 IVLDRTAFYPESGGQPSDTGKLVRERDGAEFKVVYAGKFNGDISHEISPE---GETGAEG 84

Query:    97 LEKGKEVRLWVDESRRKLNSR 117
             L+ G +V+  +D  RR  + R
Sbjct:    85 LKVGDKVKGIIDWDRRYRHMR 105

GO:0002161 "aminoacyl-tRNA editing activity" evidence=IMP

GO:0006450 "regulation of translational fidelity" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019776001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (243 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
PLN02961	223	PLN02961, PLN02961, alanine-tRNA ligase	1e-108
COG2872	241	COG2872, COG2872, Predicted metal-dependent hydrol	2e-24
TIGR03683	902	TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase	1e-21
PRK13902	900	PRK13902, alaS, alanyl-tRNA synthetase; Provisiona	3e-21
COG0013	879	COG0013, AlaS, Alanyl-tRNA synthetase [Translation	1e-19
TIGR00344	851	TIGR00344, alaS, alanine--tRNA ligase	4e-17
PRK00252	865	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	9e-17
pfam01411	551	pfam01411, tRNA-synt_2c, tRNA synthetases class II	4e-12
PLN02900	936	PLN02900, PLN02900, alanyl-tRNA synthetase	3e-08
smart00863	43	smart00863, tRNA_SAD, Threonyl and Alanyl tRNA syn	1e-04
pfam07973	44	pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synt	0.002

>gnl|CDD|178546 PLN02961, PLN02961, alanine-tRNA ligase

 Score =  309 bits (794), Expect = e-108
 Identities = 127/223 (56%), Positives = 151/223 (67%), Gaps = 31/223 (13%)

Query: 34  GRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEF 93
           GR AL+L+ TIFHPQGGGQPSDTG I+++  D KF V DVR KDG+V+HYGV E S  E 
Sbjct: 1   GRIALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPES 60

Query: 94  EMELEKGKEVRLWVDESRRKLNSR-------------------------------PYVEY 122
               E G EV + VDESRRKL+SR                               P+VEY
Sbjct: 61  ASPFEAGDEVTVTVDESRRKLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEY 120

Query: 123 KGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRI 182
           KG +PQ EL SK  ELE EAN LI+ GGKV  AVLPY+EA+ LCGG LP YI + STPRI
Sbjct: 121 KGKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGGSLPDYIAKDSTPRI 180

Query: 183 VKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSV 225
           VK+GD+PGCPCGGTHV+D+SEI S+KV+QIR KKG T+V Y++
Sbjct: 181 VKIGDSPGCPCGGTHVADVSEITSVKVTQIRVKKGVTRVSYTI 223

Length = 223

>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 65/249 (26%), Positives = 104/249 (41%), Gaps = 43/249 (17%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
           T+  YYD+    +  + ++     +     ++L+ TIF+P GGGQP DTG +I A  ++ 
Sbjct: 2   TEKLYYDDSYLKEFEATVVDVEDNE-----IVLDRTIFYPTGGGQPGDTGTLIWAGGEYV 56

Query: 68  FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR---------- 117
               DV      + H         E       G +V+L +D  RR  + R          
Sbjct: 57  VE--DVTKDGEEIVHV------LAEHAKLKV-GDKVKLKIDWERRYRHMRMHTALHLLSA 107

Query: 118 -PYVEYKGSVPQNE--------------LQSKTKELELEANALISRGGKVMVAVLPYEEA 162
             Y  Y       E               + + +E+E  AN L+     V++  +P EEA
Sbjct: 108 VLYKVYGALTTGFEIGEDYARIDFDGEDTEDEIEEVEALANELVKENLPVIIYFIPREEA 167

Query: 163 SMLCGG--CLPHYIPQG-STPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTKKGT 218
             L G         P      RIV++GD    PCGGTHV +  EI  +K+ +  +  KG 
Sbjct: 168 EKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEKKGKGN 227

Query: 219 TKVFYSVGS 227
            +V++++G 
Sbjct: 228 RRVYFTLGE 236

Length = 241

>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 60/244 (24%), Positives = 107/244 (43%), Gaps = 55/244 (22%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
            T+  +Y++    +  +K++  F        ++L+ T F+P+GGGQP+DTG++I    ++
Sbjct: 500 ETRRLFYEDPTMREFEAKVLGVFD-----NYVVLDQTAFYPEGGGQPADTGYLITNGGEY 554

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           +  V DV+   G++ H   V+  G      +++G EV+  +D  RR    R         
Sbjct: 555 R--VVDVQKVGGVIVH--KVDGEG------IKEGDEVKGEIDWERRLRLMRHHTATHVLL 604

Query: 118 --------PYVEYKGSVPQNELQS--------------KTKELELEANALISRGGKVMVA 155
                    +V   G+  Q +                 + KE+E  AN ++     V V 
Sbjct: 605 AAARRVLGRHVWQAGA--QKDTDKARLDITHYKRISEEEIKEIERLANRIVMENRPVSVK 662

Query: 156 VLPYEEASMLCGGCLPHY---IPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI 212
            +   EA    G  L  Y   +P G   R+V++ D     CGGTH  +  EI  +K+  +
Sbjct: 663 WMDRNEAEQKYGFRL--YQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKI--L 718

Query: 213 RTKK 216
           +T++
Sbjct: 719 KTER 722

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. Length = 902

>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional

 Score = 91.5 bits (228), Expect = 3e-21
 Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 61/247 (24%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
            T+  +Y++    +  +K++           ++L+ T F+P+GGGQP+DTG +IV    +
Sbjct: 496 ETEKLFYEDPYMREFEAKVLGVIDNY-----VVLDQTAFYPEGGGQPADTGVLIVDGKGY 550

Query: 67  KFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--------- 117
           K  V DV+   G++ H  V+E          +KG EVR  +D  RR    R         
Sbjct: 551 K--VVDVQKVGGVIVH--VLEGEPP------KKGDEVRGEIDWERRYRLMRHHTATHIIL 600

Query: 118 --------PYV-----------------EYKGSVPQNELQSKTKELELEANALISRGGKV 152
                    +V                  YK  + + E++    E+E  AN ++     V
Sbjct: 601 AAARKVLGDHVWQAGAQKTVDKARLDITHYK-RITREEVK----EIERLANEIVMENRPV 655

Query: 153 MVAVLPYEEASMLCGGCLPHY---IPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV 209
            V  +   EA    G  L  Y   +P G T R+V++GD     CGGTHVS+  EI  +K+
Sbjct: 656 KVEWMDRNEAEQKYGFRL--YQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKI 713

Query: 210 SQIRTKK 216
             ++T++
Sbjct: 714 --LKTER 718

Length = 900

>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 66/245 (26%), Positives = 95/245 (38%), Gaps = 67/245 (27%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDD--------GRRALILESTIFHPQGGGQPSDTGF 58
            T+   YD    L+   K++  F                ++L+ T F+ + GGQ  DTG+
Sbjct: 456 ETEFLGYD---DLEMEFKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGY 512

Query: 59  IIVADSDFKFIVHDVRS-KDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR 117
           I   D   +F V DV+   +G++ H G VE+       EL+ G EV   VDE RR+   R
Sbjct: 513 IF-GDGGGRFEVTDVQKVGNGVIVHKGKVESG------ELKVGDEVTAEVDEERRRRLMR 565

Query: 118 -----------------PYVEYKGS----------------VPQNELQSKTKELELEANA 144
                             +V   GS                +   EL    KE+E   N 
Sbjct: 566 NHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKALTAEEL----KEIERLVNE 621

Query: 145 LISRGGKVMVAVLPYEEA-----SMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVS 199
           +I     V    +  +EA       L G     Y   G   R+V++GD     CGGTHVS
Sbjct: 622 IIRENLPVKTEEMDLDEAKAKGAMALFGE---KY---GDEVRVVEIGDFSVELCGGTHVS 675

Query: 200 DISEI 204
           +  +I
Sbjct: 676 NTGDI 680

Length = 879

>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase

 Score = 79.4 bits (196), Expect = 4e-17
 Identities = 64/241 (26%), Positives = 96/241 (39%), Gaps = 61/241 (25%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRA--------LILESTIFHPQGGGQPSDTGF 58
            T+   Y+    L+  +K+I  F+               +IL+ T F+ + GGQ  DTG+
Sbjct: 451 ATEFLGYE---DLEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGY 507

Query: 59  IIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR- 117
           +I   +D KF V DV+  +G+VFH+G VE         L+ G +V   +DE RR    R 
Sbjct: 508 LI--ANDGKFRVVDVQKPNGVVFHFGEVEGG------SLKVGDKVIAVIDEKRRLRIMRN 559

Query: 118 ----------------PYVEYKGS----------------VPQNELQSKTKELELEANAL 145
                            +V   GS                + + EL    +++E   N  
Sbjct: 560 HSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHYRALTREEL----EKIEDLVNEQ 615

Query: 146 ISRGGKVMVAVLPYEEASMLCGGCL--PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISE 203
           I     + V  +  +EA       L    Y   G   R+V +GD     CGGTHV +  E
Sbjct: 616 ILANIPIKVIFMDLDEAKAKGAFALFGEKY---GEKVRVVSVGDVSVELCGGTHVRNTGE 672

Query: 204 I 204
           I
Sbjct: 673 I 673

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP) [Protein synthesis, tRNA aminoacylation]. Length = 851

>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed

 Score = 78.2 bits (194), Expect = 9e-17
 Identities = 65/253 (25%), Positives = 97/253 (38%), Gaps = 83/253 (32%)

Query: 6   IPTKLDYYDNMLKLQSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSD 55
           + T+   YD    L++ +K+++ F           G++    ++L+ T F+ + GGQ  D
Sbjct: 443 LATEFVGYDT---LEAEAKVLALFVDGESVDSAKAGEEV--EVVLDKTPFYAESGGQVGD 497

Query: 56  TGFIIVADSDFKFIVHDV-RSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKL 114
           TG I        F V D  +  +G++ H G VE  G     EL+ G EV   VDE RR+ 
Sbjct: 498 TGVIE---DGGVFEVTDTQKPPNGLIVHRGKVE-EG-----ELKVGDEVTAEVDEERRRA 548

Query: 115 NSR-----------------PYVEYKGS----------------VPQNELQSKTKELELE 141
            +R                  +V   GS                +   EL    +++E  
Sbjct: 549 IARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFEALTPEEL----RKIEDL 604

Query: 142 ANALISRGGKVMVAVLPYEEAS-----MLCGGCLPHYIPQGSTPRIVKLGD-----NPGC 191
            N  I     V    +  EEA       L G     Y   G   R+V +GD         
Sbjct: 605 VNEKIRENLPVETEEMSIEEAKKMGAMALFGE---KY---GDEVRVVSIGDFSIEL---- 654

Query: 192 PCGGTHVSDISEI 204
            CGGTHVS+  +I
Sbjct: 655 -CGGTHVSNTGDI 666

Length = 865

>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A)

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 23/110 (20%)

Query: 12  YYDNMLKLQSTSKLISYFK----------GDDGRRALILESTIFHPQGGGQPSDTGFIIV 61
            YD+   L++ +K+++ FK          G +G   +IL+ T F+ + GGQ  DTG+II 
Sbjct: 455 GYDD---LEAEAKILALFKDGEFVAEVLEGQEG--GVILDRTPFYAESGGQIGDTGYII- 508

Query: 62  ADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESR 111
                +F V DV+   G+V H G +E+        L+ G  V   VDE R
Sbjct: 509 -GEGGEFRVTDVQKYGGVVVHKGKLESG------SLKVGDTVIAVVDEDR 551

Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only alanyl-tRNA synthetases. Length = 551

>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 54/206 (26%), Positives = 76/206 (36%), Gaps = 55/206 (26%)

Query: 38  LILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMEL 97
           ++L+ T F+ + GGQ  DTG +  +       V DV+   G V H G V       E  +
Sbjct: 524 IVLDKTSFYAESGGQIGDTGVLEGSG-GAVVEVSDVQKAGGFVLHIGTVT------EGSV 576

Query: 98  EKGKEVRLWVDESRRK-----------LNSR------PYVEYKGS--------------- 125
             G  V   VD  RR+           LNS        +V+ KGS               
Sbjct: 577 SVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK 636

Query: 126 -VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG-----GCLPHYIPQGST 179
            +   EL    +E+E   N  I     V    +P  +A  + G     G    Y      
Sbjct: 637 PMTPEEL----REVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFG--EKY---PDP 687

Query: 180 PRIVKLGDNPGCP-CGGTHVSDISEI 204
            R+V +G       CGGTHVS+ +E 
Sbjct: 688 VRVVSVGGVYSMELCGGTHVSNTAEA 713

Length = 936

>gnl|CDD|197931 smart00863, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 38.1 bits (90), Expect = 1e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 181 RIVKLGDNPGCPCGGTHVSDISEIISMKV 209
           R+V +GD     CGGTHV +  EI + K+
Sbjct: 2   RVVSIGDFSVELCGGTHVPNTGEIGAFKI 30

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 43

>gnl|CDD|219676 pfam07973, tRNA_SAD, Threonyl and Alanyl tRNA synthetase second additional domain

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 181 RIVKLGDNPGCPCGGTHVSDISEI 204
           R+V++GD     CGGTHV +  EI
Sbjct: 2   RVVRIGDFDVDLCGGTHVPNTGEI 25

The catalytically active from of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain. Length = 44

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
COG2872	241	Predicted metal-dependent hydrolases related to al	100.0
PLN02961	223	alanine-tRNA ligase	100.0
TIGR03683	902	A-tRNA_syn_arch alanyl-tRNA synthetase. This famil	100.0
PRK13902	900	alaS alanyl-tRNA synthetase; Provisional	100.0
COG0013	879	AlaS Alanyl-tRNA synthetase [Translation, ribosoma	100.0
TIGR00344	851	alaS alanine--tRNA ligase. The model describes ala	100.0
PRK00252	865	alaS alanyl-tRNA synthetase; Reviewed	100.0
PLN02900	936	alanyl-tRNA synthetase	100.0
KOG0188	895	consensus Alanyl-tRNA synthetase [Translation, rib	100.0
KOG2105	415	consensus Predicted metal-dependent hydrolase, con	100.0
PRK01584	594	alanyl-tRNA synthetase; Provisional	99.75
PF01411	552	tRNA-synt_2c: tRNA synthetases class II (A); Inter	99.71
PF07973	44	tRNA_SAD: Threonyl and Alanyl tRNA synthetase seco	99.62
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.49
smart00863	44	tRNA_SAD Threonyl and Alanyl tRNA synthetase secon	99.48
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.36
PLN02837	614	threonine-tRNA ligase	99.33
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.29
PLN02908	686	threonyl-tRNA synthetase	99.14
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	98.99
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	98.73
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	97.21

>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]

Probab=100.00  E-value=5e-51  Score=340.94  Aligned_cols=207  Identities=31%  Similarity=0.493  Sum_probs=171.8

Q ss_pred             cceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEe
Q 027168            7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVV   86 (227)
Q Consensus         7 ~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~   86 (227)
                      ||++||++|+|..+++|+|+++..     ..|+||+|+|||+|||||+|+|+|.++++...  +.++.+.+..|+|+...
T Consensus         1 ~T~~ly~~D~y~~e~~~~v~~v~~-----~~i~ld~T~Fyp~~GGQp~D~G~l~~~~~~~~--~~~~~~~~~~I~H~~~~   73 (241)
T COG2872           1 MTEKLYYDDSYLKEFEATVVDVED-----NEIVLDRTIFYPTGGGQPGDTGTLIWAGGEYV--VEDVTKDGEEIVHVLAE   73 (241)
T ss_pred             CccceeccccccccceEEEEEEeC-----CeEEEEeccccCCCCCCcCCceEEEeCCceEE--EEEEEecceEEEEEecC
Confidence            699999999999999999999985     28999999999999999999999999876554  88888888899997422


Q ss_pred             ecCCcccccccCCCCEEEEEEeHHHHhhhhcccccc-----------------------cCCC--ChhHhhhhHHHHHHH
Q 027168           87 ENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEY-----------------------KGSV--PQNELQSKTKELELE  141 (227)
Q Consensus        87 ~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~~~-----------------------~g~l--~~~~l~~~~~~IE~~  141 (227)
                             ...+++|++|.+.|||+|||+|||.|..+                       .+.+  +.++.+..+++++++
T Consensus        74 -------~~~~~vG~~V~~~IDW~rRy~~mr~HTa~Hlls~~~~~~~~~~~~g~~i~~d~~~iD~~~e~~~~~~~~v~~~  146 (241)
T COG2872          74 -------HAKLKVGDKVKLKIDWERRYRHMRMHTALHLLSAVLYKVYGALTTGFEIGEDYARIDFDGEDTEDEIEEVEAL  146 (241)
T ss_pred             -------cccCCCCCEEEEEECcHHHHHHHhhhHHHHHHHHHhhccccceeecceecccccccccccccchhhHHHHHHH
Confidence                   13678999999999999999999955321                       1111  222233455689999


Q ss_pred             HHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCC-CC-CCCcEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCC
Q 027168          142 ANALISRGGKVMVAVLPYEEASMLCGG-CLPHYI-PQ-GSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKG  217 (227)
Q Consensus       142 ~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~-~~-~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~  217 (227)
                      +|++|++|+||...+++++||.+.++. ++.... +. .+.+|+|+|+|+|.+|||||||+||+|||.|+|+++++ +|+
T Consensus       147 ~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~~~~~~~~g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e~k~k~  226 (241)
T COG2872         147 ANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEKKGKG  226 (241)
T ss_pred             HHHHHHcCCeeeeeecCHHHHhhCcChhhhcccCCccccceEEEEEECCeeccCCCCcccCCccceEEEEEEEEEEecCc
Confidence            999999999999999999999998763 222222 22 35899999999999999999999999999999999976 568


Q ss_pred             eEEEEEEEcC
Q 027168          218 TTKVFYSVGS  227 (227)
Q Consensus       218 ~~Ri~~~~~~  227 (227)
                      ..||+|.+++
T Consensus       227 ~~Rv~f~~~~  236 (241)
T COG2872         227 NRRVYFTLGE  236 (241)
T ss_pred             eEEEEEEecc
Confidence            9999999975

>PLN02961 alanine-tRNA ligase

Probab=100.00  E-value=4.6e-50  Score=335.71  Aligned_cols=190  Identities=64%  Similarity=1.046  Sum_probs=159.5

Q ss_pred             EEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhh
Q 027168           36 RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLN  115 (227)
Q Consensus        36 ~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~  115 (227)
                      +.|+||+|+|||+|||||+|+|+|...+++..|.|.+|++.+|.++|++.+..+..+....|.+|++|.+.|||+||+.+
T Consensus         3 ~~viLd~T~FYpegGGQp~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR~~~   82 (223)
T PLN02961          3 IALVLDRTIFHPQGGGQPSDTGRIVISGGDTKFSVQDVRRKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRRKLH   82 (223)
T ss_pred             eEEEeCCceEcCCCCCCCCcEEEEEecCCCcEEEEEEEEEECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHHhhh
Confidence            68999999999999999999999987544456889999999999999976653111123468899999999999999999


Q ss_pred             hccccc-------------------------------ccCCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhh
Q 027168          116 SRPYVE-------------------------------YKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASM  164 (227)
Q Consensus       116 m~~~~~-------------------------------~~g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~  164 (227)
                      ||.|..                               +.+.++.+++.+.+.+||+++|++|++++||++.++++++|++
T Consensus        83 m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~~~~~v~~~~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~  162 (223)
T PLN02961         83 SRLHSAGHLLDVCMARVGLGPLEPGKGYHFPDGPFVEYKGKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAE  162 (223)
T ss_pred             hccCcHHHHHHHHHHHcCCCccccccccccCCccceeecccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHH
Confidence            994421                               1223455566445678999999999999999999999999998


Q ss_pred             hcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEeeCCeEEEEEEE
Q 027168          165 LCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKKGTTKVFYSV  225 (227)
Q Consensus       165 ~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~~~~~~Ri~~~~  225 (227)
                      +.+..+|.+.+..+.+|+|+|+++|.+|||||||.||+|||.|+|+++++++|..||+|.+
T Consensus       163 ~~~~~~~~~~~~~~~vRiV~I~~~d~~~CgGTHv~nT~eig~i~I~~~~~~kg~~Rv~~~~  223 (223)
T PLN02961        163 LCGGSLPDYIAKDSTPRIVKIGDSPGCPCGGTHVADVSEITSVKVTQIRVKKGVTRVSYTI  223 (223)
T ss_pred             hcCCcCCCcCCCCCceEEEEECCCccCccCCcccCchhccccEEEEEEEecCCEEEEEEeC
Confidence            8665566655556789999999999999999999999999999999999889999999974

>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase

Probab=100.00  E-value=7.5e-48  Score=373.18  Aligned_cols=205  Identities=28%  Similarity=0.449  Sum_probs=175.2

Q ss_pred             CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEE
Q 027168            4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY   83 (227)
Q Consensus         4 ~~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~   83 (227)
                      ++++|+++||+++|+.+++|+|+++..     .+|+||+|+|||+|||||+|+|+|..+++  .+.|.+|++.+|.++|+
T Consensus       497 ~~~~T~~l~y~~~~~~e~~a~Vl~i~~-----~~vvLd~T~FYpEgGGQ~~D~G~I~~~~~--~~~V~dv~k~~g~i~H~  569 (902)
T TIGR03683       497 DLPETRRLFYEDPTMREFEAKVLGVFD-----NYVVLDQTAFYPEGGGQPADTGYLITNGG--KIRVVDVQKVGGVIVHK  569 (902)
T ss_pred             cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCCc--EEEEEEEEEECCEEEEE
Confidence            468899999999999999999999983     47999999999999999999999987643  46699999999999998


Q ss_pred             EEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168           84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE  130 (227)
Q Consensus        84 ~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~  130 (227)
                      +.  .      +.+.+|++|.+.|||+||+++||.|                 +.|.|                .+|+++
T Consensus       570 ~~--~------~~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee  641 (902)
T TIGR03683       570 VD--G------EGIKEGDEVKGEIDWERRLRLMRHHTATHVLLAAARRVLGRHVWQAGAQKDTDKARLDITHYKRISEEE  641 (902)
T ss_pred             eC--C------CCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCcEEEEEeCCCCCCHHH
Confidence            52  1      2378899999999999999999943                 22333                245556


Q ss_pred             hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168          131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV  209 (227)
Q Consensus       131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I  209 (227)
                      +.    +||+.+|++|++|+||++.+++++||++..+..+ +...++++.||||+||++|.++||||||.|||+||.|+|
T Consensus       642 l~----~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI  717 (902)
T TIGR03683       642 IK----EIERLANRIVMENRPVSVKWMDRNEAEQKYGFRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKI  717 (902)
T ss_pred             HH----HHHHHHHHHHHhCCCeEEEEeCHHHHHhcCchhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEE
Confidence            55    6999999999999999999999999998765322 233456788999999999999999999999999999999


Q ss_pred             EEEEe-eCCeEEEEEEEcC
Q 027168          210 SQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       210 ~~~~~-~~~~~Ri~~~~~~  227 (227)
                      ++.++ ++|..||+|.+|+
T Consensus       718 ~~~~~i~~Gv~RIe~v~G~  736 (902)
T TIGR03683       718 LKTERIQDGVERIEFAAGE  736 (902)
T ss_pred             EEEEEecCCeEEEEEEECh
Confidence            99986 6789999999984

This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.

>PRK13902 alaS alanyl-tRNA synthetase; Provisional

Probab=100.00  E-value=1.3e-47  Score=371.45  Aligned_cols=205  Identities=31%  Similarity=0.461  Sum_probs=174.4

Q ss_pred             CCCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEE
Q 027168            4 EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHY   83 (227)
Q Consensus         4 ~~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~   83 (227)
                      ++|+|+++||+++|+++++|+|+++..     .+|+||+|+|||+|||||+|+|+|..++  ..+.|.+|++.+|.++|+
T Consensus       493 ~~~~T~~l~y~~~~~~~~~a~Vl~i~~-----~~vvLD~T~FYpEgGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~i~H~  565 (900)
T PRK13902        493 DLPETEKLFYEDPYMREFEAKVLGVID-----NYVVLDQTAFYPEGGGQPADTGVLIVDG--KGYKVVDVQKVGGVIVHV  565 (900)
T ss_pred             cCCCceEeccccCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCC--cEEEEEEEEEECCEEEEE
Confidence            467899999999999999999999984     3899999999999999999999998764  346699999999999998


Q ss_pred             EEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168           84 GVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE  130 (227)
Q Consensus        84 ~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~  130 (227)
                      +  .      .+.+..|++|.+.|||+||+++||.|                 +.|.|                .+++++
T Consensus       566 ~--~------~~~~~~G~~V~~~VD~~rR~~~mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~~d~~r~Df~~~~~lt~ee  637 (900)
T PRK13902        566 L--E------GEPPKKGDEVRGEIDWERRYRLMRHHTATHIILAAARKVLGDHVWQAGAQKTVDKARLDITHYKRITREE  637 (900)
T ss_pred             e--C------CCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCceeecCccccCCCEEEEEeCCCCCCHHH
Confidence            5  2      12344599999999999999999943                 22333                345566


Q ss_pred             hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168          131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV  209 (227)
Q Consensus       131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I  209 (227)
                      +.    +||+.+|++|++|+||++.+++++||.+.++..+ +...++++.||||+||++|.++||||||.|||+||.|+|
T Consensus       638 l~----~IE~~vN~~I~~n~pV~~~~~~~~eA~~~~~~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI  713 (900)
T PRK13902        638 VK----EIERLANEIVMENRPVKVEWMDRNEAEQKYGFRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKI  713 (900)
T ss_pred             HH----HHHHHHHHHHHcCCCEEEEecCHHHHHhccchhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEE
Confidence            65    5999999999999999999999999998765322 233466788999999999999999999999999999999


Q ss_pred             EEEEe-eCCeEEEEEEEcC
Q 027168          210 SQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       210 ~~~~~-~~~~~Ri~~~~~~  227 (227)
                      ++.++ ++|..||+|.+|+
T Consensus       714 ~~~e~i~~Gv~RIe~v~G~  732 (900)
T PRK13902        714 LKTERIQDGVERLEFAAGD  732 (900)
T ss_pred             EEEEEecCCeEEEEEEECh
Confidence            99986 6788999999984

>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.9e-45  Score=345.49  Aligned_cols=210  Identities=30%  Similarity=0.353  Sum_probs=174.3

Q ss_pred             CCcceeceeccccceEeeeEEEEEEec------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeC-
Q 027168            5 VIPTKLDYYDNMLKLQSTSKLISYFKG------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD-   77 (227)
Q Consensus         5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~-   77 (227)
                      .++|+++||++++.. +.+.++.....      +++..+|+||+|+||||||||++|+|+|...+ +..|.|.+|++.. 
T Consensus       454 ~~~tef~gY~~~~~~-~~i~~l~~~~~~v~~~~~g~~~~vVld~TpFYaEsGGQ~~D~G~i~~~~-~~~~~V~dvqK~~~  531 (879)
T COG0013         454 LPETEFLGYDDLEME-FKVLVLFVDGKEVSELNEGQEVYVVLDQTPFYAESGGQVGDTGYIFGDG-GGRFEVTDVQKVGN  531 (879)
T ss_pred             CCCceeeecccccce-EEEEEEEecCcccccccCCceEEEEEecCCccCCCCCccCceEEEEecC-CcEEEEEEEEEcCC
Confidence            578999999998655 44444443221      23568999999999999999999999999875 5678899999987 


Q ss_pred             CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhcc-----------------cccccCC---------------
Q 027168           78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRP-----------------YVEYKGS---------------  125 (227)
Q Consensus        78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~-----------------~~~~~g~---------------  125 (227)
                      |.++|.+.+.      .+.+++|+.|.+.|||+||+++|++                 |+.|.||               
T Consensus       532 ~~~vH~~~~~------~G~l~~gd~V~~~vD~~rR~~~~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~  605 (879)
T COG0013         532 GVIVHKGKVE------SGELKVGDEVTAEVDEERRRRLMRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYK  605 (879)
T ss_pred             ceEEEEEeec------cCccCCCCEEEEEECHHHHHHHHhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecCCC
Confidence            8999998765      4689999999999999999999994                 4557775               


Q ss_pred             -CChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCcccccccccc
Q 027168          126 -VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI  204 (227)
Q Consensus       126 -l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eI  204 (227)
                       +|.+||.    +||..+|++|++|+||.+.++++++|++.-...|... .+++.||||++|+||.++||||||.|||+|
T Consensus       606 ~it~Eel~----~IE~~vNe~I~~n~~V~~~~m~~~eAk~~Ga~alfGe-kY~~~VRVV~ig~~SvElCGGTHv~~Tg~I  680 (879)
T COG0013         606 ALTAEELK----EIERLVNEIIRENLPVKTEEMDLDEAKAKGAMALFGE-KYGDEVRVVEIGDFSVELCGGTHVSNTGDI  680 (879)
T ss_pred             CCCHHHHH----HHHHHHHHHHHcCCceeEEEccHHHHHHhChHhhcCC-cCCCeEEEEEECCceeeccCCcccCCccce
Confidence             3667776    5999999999999999999999999998721122222 334789999999999999999999999999


Q ss_pred             ccEEEEEEEe-eCCeEEEEEEEcC
Q 027168          205 ISMKVSQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       205 g~~~I~~~~~-~~~~~Ri~~~~~~  227 (227)
                      |.|+|++.+. ..|..||++.+|.
T Consensus       681 G~fkI~~e~~i~aGVrRIeavtG~  704 (879)
T COG0013         681 GLFKIISEEGIAAGVRRIEAVTGE  704 (879)
T ss_pred             eeEEEEEecccccCeEEEEEEcCH
Confidence            9999999985 6799999999873

>TIGR00344 alaS alanine--tRNA ligase

Probab=100.00  E-value=8.9e-45  Score=350.76  Aligned_cols=207  Identities=31%  Similarity=0.406  Sum_probs=172.2

Q ss_pred             CCcceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe
Q 027168            5 VIPTKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK   76 (227)
Q Consensus         5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~--------~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~   76 (227)
                      .++|+++||++   .+++|+|+++..        ..++..+|+||+|+|||+|||||+|+|+|..+  +..|.|.+|++.
T Consensus       449 ~~~t~~l~Y~~---~~~~a~V~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~--~~~~~V~dv~~~  523 (851)
T TIGR00344       449 YPATEFLGYED---LEFEAKVIGLFEDGKPVDEAEAGQSVYVILDQTPFYAESGGQIGDTGYLIAN--DGKFRVVDVQKP  523 (851)
T ss_pred             cCCccccceec---ccccEEEEEEEeCCccceecccCCceEEEEeCCCCCCCCCCCCCCEEEEecC--CcEEEEEEEEEE
Confidence            36799999998   689999999984        12446899999999999999999999999854  345679999999


Q ss_pred             CCEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhcccc-----------------cccC---------------
Q 027168           77 DGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV-----------------EYKG---------------  124 (227)
Q Consensus        77 ~g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~-----------------~~~g---------------  124 (227)
                      +|.++|++.+.      .+.+.+|++|.+.|||+||+.+|+.|.                 .+.|               
T Consensus       524 ~g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~~d~~r~Df~~~  597 (851)
T TIGR00344       524 NGVVFHFGEVE------GGSLKVGDKVIAVIDEKRRLRIMRNHSATHLLHAALQKVLGNHVWQAGSLVSVKKLRFDFSHY  597 (851)
T ss_pred             CCEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCceEeccCcccCCcEEEEecCC
Confidence            99999987654      246789999999999999999999431                 2222               


Q ss_pred             -CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccc
Q 027168          125 -SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISE  203 (227)
Q Consensus       125 -~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~e  203 (227)
                       .+|++++.    +||+.||++|++|+||.+.+++++||.+.++..+.. -.+++.||||+||++|.+|||||||.||++
T Consensus       598 ~~lt~eel~----~IE~~vNelI~~n~pV~~~~~~~eeA~~~~~~~~~~-e~y~~~VRVV~Ig~~d~e~CgGTHV~nTge  672 (851)
T TIGR00344       598 RALTREELE----KIEDLVNEQILANIPIKVIFMDLDEAKAKGAFALFG-EKYGEKVRVVSVGDVSVELCGGTHVRNTGE  672 (851)
T ss_pred             CCCCHHHHH----HHHHHHHHHHHhCCceEEEEeCHHHHHhcchhhhcC-CCCCCeEEEEEECCeeccCCCCCccCChhh
Confidence             34556665    599999999999999999999999999875432211 123578999999999999999999999999


Q ss_pred             cccEEEEEEEe-eCCeEEEEEEEcC
Q 027168          204 IISMKVSQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       204 Ig~~~I~~~~~-~~~~~Ri~~~~~~  227 (227)
                      ||.|+|++.++ ++|..||+|.+|+
T Consensus       673 Ig~~kI~~~~~~~~G~~RIe~v~G~  697 (851)
T TIGR00344       673 IGLFKIVKESGIAAGVRRIEAVTGN  697 (851)
T ss_pred             CeEEEEEEEeEecCCeEEEEEEEcH
Confidence            99999999985 5688999999984

The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).

>PRK00252 alaS alanyl-tRNA synthetase; Reviewed

Probab=100.00  E-value=1.3e-43  Score=343.69  Aligned_cols=204  Identities=31%  Similarity=0.399  Sum_probs=168.2

Q ss_pred             cceeceeccccceEeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe-C
Q 027168            7 PTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-D   77 (227)
Q Consensus         7 ~t~~ly~~~~y~~~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~-~   77 (227)
                      +|+++||++   .+++|+|+++...        .++.++|+||+|+|||+|||||+|+|+|.. +  ..|.|.+|++. +
T Consensus       444 ~t~f~~Y~~---~~~~a~v~~i~~~~~~~~~~~~g~~~~vvLd~T~FYpegGGQ~~D~G~I~~-~--~~~~V~~v~~~~~  517 (865)
T PRK00252        444 ATEFVGYDT---LEAEAKVLALFVDGESVDSAKAGEEVEVVLDKTPFYAESGGQVGDTGVIED-G--GVFEVTDTQKPPN  517 (865)
T ss_pred             CCeeeeeee---ccccEEEEEEEeCCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEee-C--cEEEEEEEEEccC
Confidence            578888876   5889999999851        244589999999999999999999999976 3  35669999997 9


Q ss_pred             CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------cccc----------------C
Q 027168           78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYK----------------G  124 (227)
Q Consensus        78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~----------------g  124 (227)
                      |.++|++.+.      .+.+.+|++|.+.|||+||+.+|+.|                 +.+.                +
T Consensus       518 g~i~H~~~~~------~~~l~~G~~V~~~ID~~rR~~~m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~~~~~r~Df~~~~  591 (865)
T PRK00252        518 GLIVHRGKVE------EGELKVGDEVTAEVDEERRRAIARNHSATHLLHAALREVLGEHVTQAGSLVAPDRLRFDFSHFE  591 (865)
T ss_pred             CEEEEEEEec------cCCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeccCcccCCeEEEEeecCC
Confidence            9999997553      24578999999999999999999943                 1222                2


Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCcccccccccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI  204 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eI  204 (227)
                      .++++++.    +||+.||++|++|+||++.+++++||.+.....+.. .++++.||+|+||++|.+|||||||+|||+|
T Consensus       592 ~lt~eel~----~IE~~vN~lI~~n~pV~~~~~~~~eA~~~~~~~~~~-~~y~~~VRVV~Ig~~d~~~CgGTHV~nTgeI  666 (865)
T PRK00252        592 ALTPEELR----KIEDLVNEKIRENLPVETEEMSIEEAKKMGAMALFG-EKYGDEVRVVSIGDFSIELCGGTHVSNTGDI  666 (865)
T ss_pred             CCCHHHHH----HHHHHHHHHHHhCCCeEEEEeCHHHHHhCCchhhcc-ccCCCeEEEEEECCceeeCCCCCccCCcccC
Confidence            34566665    599999999999999999999999999854322211 1346789999999999999999999999999


Q ss_pred             ccEEEEEEEe-eCCeEEEEEEEcC
Q 027168          205 ISMKVSQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       205 g~~~I~~~~~-~~~~~Ri~~~~~~  227 (227)
                      |.|+|++.++ ++|..||+|.+|+
T Consensus       667 g~~kI~~~~~~~~g~~RI~~v~G~  690 (865)
T PRK00252        667 GLFKIVSESGVAAGVRRIEAVTGE  690 (865)
T ss_pred             eEEEEEEEeeecCCeEEEEEEECH
Confidence            9999999986 5688999999984

>PLN02900 alanyl-tRNA synthetase

Probab=100.00  E-value=1.9e-43  Score=342.88  Aligned_cols=208  Identities=27%  Similarity=0.358  Sum_probs=169.2

Q ss_pred             CcceeceeccccceEeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeC
Q 027168            6 IPTKLDYYDNMLKLQSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKD   77 (227)
Q Consensus         6 ~~t~~ly~~~~y~~~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~   77 (227)
                      ++|++++|+..  .+++|+|+++...        .++.++|+||+|+|||+|||||+|+|+|..+++ ..|.|.+|++.+
T Consensus       486 ~~t~f~gY~~~--~~~~~~v~~i~~~~~~v~~~~~g~~~~vvLd~T~FYpEgGGQp~D~G~I~~~~~-~~~~V~dv~k~~  562 (936)
T PLN02900        486 ATDDFLKYDWL--SDHEAVVKAILTGGGFVESVSEGDEVGIVLDKTSFYAESGGQIGDTGVLEGSGG-AVVEVSDVQKAG  562 (936)
T ss_pred             CCCcccccccC--CccceEEEEEEECCceeeeccCCCeEEEEEeCCCCCCCCCCCCCCEEEEecCCC-CEEEEEEEEEEC
Confidence            56899999874  2288999999742        234689999999999999999999999986542 146799999999


Q ss_pred             CEEEEEEEeecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------ccccCC---------------
Q 027168           78 GIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------VEYKGS---------------  125 (227)
Q Consensus        78 g~i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g~---------------  125 (227)
                      |.++|++.+.      .+.+.+|++|.+.|||+||+.+|+.|                 +.|.|+               
T Consensus       563 g~i~H~~~~~------~g~l~~G~~V~~~VD~~rR~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~~d~~r~Df~~~~  636 (936)
T PLN02900        563 GFVLHIGTVT------EGSVSVGDAVTCKVDYDRRRRIAPNHTATHLLNSALKEVLGDHVDQKGSLVAFEKLRFDFSHGK  636 (936)
T ss_pred             CEEEEEEEec------cCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEeccccccCCeEEEEeeCCC
Confidence            9999987554      24678999999999999999999943                 223333               


Q ss_pred             -CChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCC-CCCCCCcccccccc
Q 027168          126 -VPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDN-PGCPCGGTHVSDIS  202 (227)
Q Consensus       126 -l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~-d~~~CgGTHV~nT~  202 (227)
                       ++++++.    +||+.||++|++|+||++.+++++||.+..+. .+.. -.+.+.||+|+||++ |.++||||||.|||
T Consensus       637 ~lt~eel~----~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~~~~f~-e~y~~~VRVV~Ig~~~d~elCGGTHV~nTg  711 (936)
T PLN02900        637 PMTPEELR----EVESLVNEWIGDALPVEAKEMPLADAKRINGLRAVFG-EKYPDPVRVVSVGGVYSMELCGGTHVSNTA  711 (936)
T ss_pred             CCCHHHHH----HHHHHHHHHHHhCCCeEEEEcCHHHHhhccChHhhcC-CCCCCcEEEEEECCccceeCCCCCcCCccc
Confidence             4555555    69999999999999999999999999985431 1111 123468999999998 99999999999999


Q ss_pred             ccccEEEEEEEe-eCCeEEEEEEEcC
Q 027168          203 EIISMKVSQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       203 eIg~~~I~~~~~-~~~~~Ri~~~~~~  227 (227)
                      +||.|+|++.++ ++|..||+|.+|+
T Consensus       712 eIG~fkIls~~~~~~G~rRIe~v~G~  737 (936)
T PLN02900        712 EAEAFKLLSEEGIAKGIRRITAVTGG  737 (936)
T ss_pred             cCceEEEEEEeeecCCeEEEEEEEcH
Confidence            999999999986 5688899999984

>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-34  Score=266.35  Aligned_cols=199  Identities=29%  Similarity=0.476  Sum_probs=163.1

Q ss_pred             EeeeEEEEEEec--------CCCeEEEEEccccccCCCCCCCCCeEEEEecCC-CcEEEEEEEEEeCCEEEEEEEeecCC
Q 027168           20 QSTSKLISYFKG--------DDGRRALILESTIFHPQGGGQPSDTGFIIVADS-DFKFIVHDVRSKDGIVFHYGVVENSG   90 (227)
Q Consensus        20 ~~~a~Vl~i~~~--------~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~-~~~~~V~~v~~~~g~i~H~~~~~~~~   90 (227)
                      .+.++|+++..+        .+++++|+||+|+||+|+|||.+|+|.|.+.|. ...|.|..++. +|+++|.+.+.   
T Consensus       471 ~~~~~il~l~~e~~~v~~~~~g~~~givldktnFYaEqGGQ~~D~G~lv~~~~~~~~fnV~~~~~-gg~vvh~g~l~---  546 (895)
T KOG0188|consen  471 VCKTRILALYREDQFVESIPKGQECGIVLDKTNFYAEQGGQIYDTGKLVIDGDEDFVFNVKRVQV-GGYVVHIGVLE---  546 (895)
T ss_pred             cchhhhhhhhcCCceeeecCCCceEEEEeecceeehhcCCcccccceEEEecCccceeehhhccc-CCEEEEEeeec---
Confidence            778888888652        367899999999999999999999999999753 44667777776 89999998764   


Q ss_pred             cccccccCCCCEEEEEEeHHHHhhhhccc----------------ccccCCC-ChhHhh-----------hhHHHHHHHH
Q 027168           91 GEFEMELEKGKEVRLWVDESRRKLNSRPY----------------VEYKGSV-PQNELQ-----------SKTKELELEA  142 (227)
Q Consensus        91 ~~~~~~l~~G~~v~~~iD~~rR~~~m~~~----------------~~~~g~l-~~~~l~-----------~~~~~IE~~~  142 (227)
                          +.+.+|++|.+.+|.+||+.+|++|                ++|+||+ ++|.++           +++.++|..+
T Consensus       547 ----~~l~vgdqv~~~~De~rR~~im~nHTaTHlLN~aLr~~l~~t~QkGSlV~pdklRfDf~~k~~lt~eql~~vE~~~  622 (895)
T KOG0188|consen  547 ----GDLSVGDQVELHVDEERRQLIMRNHTATHLLNFALRQVLKGTDQKGSLVAPDKLRFDFSTKGALTKEQLKKVEDKI  622 (895)
T ss_pred             ----cccccchhHHHHhhHHHHHHHhhcchHHHHHHHHHHHhcccccccccccChhHeeeecccCCCCCHHHHHHHHHHH
Confidence                5799999999999999999999965                2466653 333221           1344699999


Q ss_pred             HHHHHcCCceEEEEcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECC---CCCCCCCccccccccccccEEEEEEE-eeCC
Q 027168          143 NALISRGGKVMVAVLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGD---NPGCPCGGTHVSDISEIISMKVSQIR-TKKG  217 (227)
Q Consensus       143 n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~---~d~~~CgGTHV~nT~eIg~~~I~~~~-~~~~  217 (227)
                      |++|.++.+|....+++++|+++.+. ...+.. +.++||||.+|.   .+.++|||||+.|||+||.|.|++.+ ..+|
T Consensus       623 ne~I~~~~~V~~~e~~l~~ak~i~glr~v~~E~-YPdpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~iakg  701 (895)
T KOG0188|consen  623 NEFIQKNAPVYAKELPLAEAKKIPGLRAVFDEV-YPDPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEGIAKG  701 (895)
T ss_pred             HHHHhcCCceEEEecCHHHHhcCCCcccccCCc-cCCceEEEEeccccccceeecCCcccccccccceEEEechhhhhhc
Confidence            99999999999999999999998763 223332 237899999985   68899999999999999999999997 4789


Q ss_pred             eEEEEEEEcC
Q 027168          218 TTKVFYSVGS  227 (227)
Q Consensus       218 ~~Ri~~~~~~  227 (227)
                      .+||....|+
T Consensus       702 irRivavTG~  711 (895)
T KOG0188|consen  702 IRRIVAVTGK  711 (895)
T ss_pred             eeEEEEeccH
Confidence            9999988764

>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]

Probab=100.00  E-value=7.6e-33  Score=232.39  Aligned_cols=195  Identities=25%  Similarity=0.349  Sum_probs=153.3

Q ss_pred             ceeccccceEeeeEEEEEEecCC-----CeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEE
Q 027168           11 DYYDNMLKLQSTSKLISYFKGDD-----GRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV   85 (227)
Q Consensus        11 ly~~~~y~~~~~a~Vl~i~~~~~-----~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~   85 (227)
                      ..+.+++++.|++.|++|.+.++     ..+.+.|.+|+.||+|||||+|.|++.+    ..  |..|.+.+-..-|++ 
T Consensus        14 ~~~~~~~~~dfkt~vvsc~p~~~kk~eieg~~i~lqdtiLfpegggqp~d~gf~~~----v~--V~~VsR~G~~A~H~~-   86 (415)
T KOG2105|consen   14 ACQRNSFLFDFKTLVVSCEPTKNKKGEIEGYEIELQDTILFPEGGGQPSDSGFLKI----VE--VSHVSRFGLHAKHHV-   86 (415)
T ss_pred             ccchhhhhhhccccccccccccCCcceeecceeeeeeeEeccCCCCCCCccccccc----ee--EEEeeccccchhhcc-
Confidence            45677888899999999987432     3489999999999999999999999964    34  888988877777863 


Q ss_pred             eecCCcccccccCCCCEEEEEEeHHHHhhhhcccccc------------------------------cCCCChhHhhhhH
Q 027168           86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEY------------------------------KGSVPQNELQSKT  135 (227)
Q Consensus        86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~~~------------------------------~g~l~~~~l~~~~  135 (227)
                              ..++.+|.+|.+.|||+||+++||.|..|                              .-+++.+++.   
T Consensus        87 --------~~~iePGt~V~V~VD~qkR~D~MQQHsGQHLitAvad~~fKlkTtSWelG~~~sa~e~~~~~mTaeqva---  155 (415)
T KOG2105|consen   87 --------NDYIEPGTTVEVAVDEQKRMDYMQQHSGQHLITAVADHLFKLKTTSWELGRFRSAIELDTPSMTAEQVA---  155 (415)
T ss_pred             --------CCCCCCCCeEEEEecHHHHhHHHHHhcchhHHHHHHHhhhccceeeeeccceeeccccCCCCccHHHHH---
Confidence                    35789999999999999999999955322                              1135677776   


Q ss_pred             HHHHHHHHHHHHcCCceEEEEcCHHH--HhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEE
Q 027168          136 KELELEANALISRGGKVMVAVLPYEE--ASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIR  213 (227)
Q Consensus       136 ~~IE~~~n~~I~~~~~v~~~~~~~~e--a~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~  213 (227)
                       .||+.+|+.|..-+|+.+..++.++  ..+..+.-+|+  ...+.+|+|.|+|.|+++||||||+||++|+.++|++.+
T Consensus       156 -aieqsvNe~I~d~~~~~v~E~sl~d~eVeqVS~~~~~D--~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILgte  232 (415)
T KOG2105|consen  156 -AIEQSVNEKIRDRLPVNVRELSLDDPEVEQVSGRGLPD--DHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILGTE  232 (415)
T ss_pred             -HHHHHHHHHHHhccchheeecccCCcchhhccCCCCcc--cccCceEEEeecCccCCccccccccchhhcceEEEeecc
Confidence             4999999999999999988776553  33332222222  124789999999999999999999999999999999998


Q ss_pred             e-eCCeEEEEEEEc
Q 027168          214 T-KKGTTKVFYSVG  226 (227)
Q Consensus       214 ~-~~~~~Ri~~~~~  226 (227)
                      + +++++.+.|..|
T Consensus       233 kg~k~rtN~~f~~G  246 (415)
T KOG2105|consen  233 KGKKNRTNLIFLSG  246 (415)
T ss_pred             ccccCccceEEEec
Confidence            7 556555555444

>PRK01584 alanyl-tRNA synthetase; Provisional

Probab=99.75  E-value=4.5e-18  Score=158.61  Aligned_cols=97  Identities=19%  Similarity=0.235  Sum_probs=82.3

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISE  203 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~e  203 (227)
                      ..++++++++    ||++||++|++|+||++.+++++||.+.....+-.. ++++.||+|+||++|.++||||||.||++
T Consensus       495 ~~it~edL~~----IE~~vNeiI~~n~pV~~~~~s~eEA~~~~~~~lf~e-~y~~~VRVV~Igd~d~elCGGTHV~nTge  569 (594)
T PRK01584        495 EKMTDDEIKK----VEDIVNLQIKNDLSVKKEVMSLEEAREKGAMALFGE-KYEDIVKVYEIDGFSKEVCGGPHVENTGE  569 (594)
T ss_pred             CCCCHHHHHH----HHHHHHHHHHhCCCeEEEEcCHHHHHhcchhhhccc-cCCCcEEEEEECCeeeeCCCCCCCCCccc
Confidence            3678888874    999999999999999999999999998643222111 34678999999999999999999999999


Q ss_pred             cccEEEEEEEe-eCCeEEEEEEE
Q 027168          204 IISMKVSQIRT-KKGTTKVFYSV  225 (227)
Q Consensus       204 Ig~~~I~~~~~-~~~~~Ri~~~~  225 (227)
                      ||.|+|++.++ ++|..||...+
T Consensus       570 IG~fkI~s~~s~g~GvrRI~av~  592 (594)
T PRK01584        570 LGTFKIQKEQSSSSGVRRIRAIL  592 (594)
T ss_pred             CceEEEEecccccCCeEEEEEEe
Confidence            99999999976 66899999875

>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6

Probab=99.71  E-value=1.8e-17  Score=154.96  Aligned_cols=93  Identities=38%  Similarity=0.589  Sum_probs=58.9

Q ss_pred             ceeceeccccceEeeeEEEEEEe--------cCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCE
Q 027168            8 TKLDYYDNMLKLQSTSKLISYFK--------GDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGI   79 (227)
Q Consensus         8 t~~ly~~~~y~~~~~a~Vl~i~~--------~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~   79 (227)
                      |+.++|++.   +++|+|+++..        ..++..+|+||+|+|||+|||||+|+|+|..++  ..|.|.+|++.+|.
T Consensus       452 teF~gYe~~---~~~akVlal~~~~~~~~~v~~~~~~~VVLD~T~FYpegGGQ~~D~G~I~~~~--~~~~V~dv~k~~g~  526 (552)
T PF01411_consen  452 TEFVGYEYL---ECEAKVLALFKDGEFVAKVEEGEEGYVVLDKTPFYPEGGGQPGDTGTIIGDG--GEFEVTDVQKVGGV  526 (552)
T ss_dssp             EETCCCC---------TT---TT--EEEEEEEEEETTEEEESEE-S--SBTTB----EEECCTT--EEEEEEEEEEETTE
T ss_pred             cccceeecc---cccceEEEEEeCCEEEeeecCCceEEEEECCccccCCCCCCCCCeEEEeecc--eEEEEEEEEEECCE
Confidence            566888863   55566665521        112346899999999999999999999998763  67889999999999


Q ss_pred             EEEEEEeecCCcccccccCCCCEEEEEEeHHH
Q 027168           80 VFHYGVVENSGGEFEMELEKGKEVRLWVDESR  111 (227)
Q Consensus        80 i~H~~~~~~~~~~~~~~l~~G~~v~~~iD~~r  111 (227)
                      ++|++...      .+.+.+|+.|.++|||+|
T Consensus       527 i~H~~~~~------~g~l~~G~~V~~~VD~eR  552 (552)
T PF01411_consen  527 ILHIGEVE------SGSLKVGDEVTAEVDWER  552 (552)
T ss_dssp             EEEEESSG-------GG--TTSEEEEEE-HHH
T ss_pred             EEEEEecc------CCCCCCCCEEEEEecCCC
Confidence            99986543      357899999999999997

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....

>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer

Probab=99.62  E-value=4.4e-16  Score=97.50  Aligned_cols=43  Identities=35%  Similarity=0.607  Sum_probs=35.9

Q ss_pred             cEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCCeEEEE
Q 027168          180 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVF  222 (227)
Q Consensus       180 vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~~~Ri~  222 (227)
                      ||+|+||++|.+|||||||+||++|+.|+|++.++ +++..||+
T Consensus         1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~~~~~~~RI~   44 (44)
T PF07973_consen    1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGESKGKGLRRIY   44 (44)
T ss_dssp             EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEEEETTEEEEE
T ss_pred             CEEEEECCeeEECCCCcccCChhEECcEEEEEeEEEcCCcEEeC
Confidence            69999999999999999999999999999997765 78999986

Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.49  E-value=1e-13  Score=130.93  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCC----CCCCCCCCcEEEEECCCCCCCCCccccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLP----HYIPQGSTPRIVKLGDNPGCPCGGTHVS  199 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV~  199 (227)
                      .+|++++.+    ||++||++|++|+||....+++++|.+++.. .+.    ... +.+.||+|+||++ .++|+||||+
T Consensus        49 ~it~e~l~~----Ie~~m~~lI~~~~pi~~~~v~~eeA~~~f~~~~~k~~l~~~~-~~~~vri~~ig~~-~d~c~Gthv~  122 (575)
T PRK12305         49 PFTPEDLKK----IEKKMKKIIKRGLPFEREEVSREEAREEFANEPYKLELIDDI-PEEGITIYDNGDF-EDLCRGPHVP  122 (575)
T ss_pred             CCCHHHHHH----HHHHHHHHHhcCCCEEEEEecHHHHHHhCCcChhHHHhhhhc-CCCeEEEEEECCE-EEECCCCCCC
Confidence            578888774    9999999999999999999999999998752 111    111 2347999999997 5789999999


Q ss_pred             cccccccEEEEEEE--------eeCCeEEEEEEEc
Q 027168          200 DISEIISMKVSQIR--------TKKGTTKVFYSVG  226 (227)
Q Consensus       200 nT~eIg~~~I~~~~--------~~~~~~Ri~~~~~  226 (227)
                      |||+||.|+|++++        +.++..||+..+=
T Consensus       123 ~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~~  157 (575)
T PRK12305        123 NTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTAW  157 (575)
T ss_pred             CccCCceeEEEEEcceEECCCCCCcceEEEEEEec
Confidence            99999999999983        3468899998764

>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain

Probab=99.48  E-value=3.1e-14  Score=89.16  Aligned_cols=43  Identities=33%  Similarity=0.565  Sum_probs=38.9

Q ss_pred             cEEEEECCCCCCCCCccccccccccccEEEEEEEe-eCCeEEEE
Q 027168          180 PRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-KKGTTKVF  222 (227)
Q Consensus       180 vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~~~~~Ri~  222 (227)
                      +|+|+||++|.+||+||||.||++||.|+|++.+. +++..||+
T Consensus         1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~~~Ri~   44 (44)
T smart00863        1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWGLQRIY   44 (44)
T ss_pred             CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecCeEEeC
Confidence            68999999999999999999999999999999987 45667874

The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.36  E-value=2.8e-12  Score=122.51  Aligned_cols=97  Identities=21%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCC-CC------CCCCCCCCcEEEEECCCCCCCCCccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC-LP------HYIPQGSTPRIVKLGDNPGCPCGGTH  197 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~------~~~~~~~~vRvv~ig~~d~~~CgGTH  197 (227)
                      .++++++.    +||++||++|++|+||....+++++|.+++... .+      ...+.++.+|++++|++ .++|+|||
T Consensus       111 ~lt~e~l~----~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k~~ll~~~~~~~~v~iy~~~~~-~d~c~G~h  185 (638)
T PRK00413        111 PFTPEDLE----AIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYKVELIEEIPEDEEISLYRQGEF-VDLCRGPH  185 (638)
T ss_pred             CCCHHHHH----HHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccHHHHhhcCCCCCeEEEEEECCE-EEECCCCC
Confidence            46777776    599999999999999999999999999987521 11      11233447999999997 68999999


Q ss_pred             cccccccccEEEEEEE--------eeCCeEEEEEEEc
Q 027168          198 VSDISEIISMKVSQIR--------TKKGTTKVFYSVG  226 (227)
Q Consensus       198 V~nT~eIg~~~I~~~~--------~~~~~~Ri~~~~~  226 (227)
                      |+|||+|+.|+|.+.+        +.++..||+=.+-
T Consensus       186 v~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~  222 (638)
T PRK00413        186 VPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAF  222 (638)
T ss_pred             CCcccCCceeEEEEEcceEEcCCCcchheEEEEeeec
Confidence            9999999999999983        3567889986553

>PLN02837 threonine-tRNA ligase

Probab=99.33  E-value=3.6e-12  Score=121.16  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=68.3

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCCCC-CC--CCCCcEEEEECCCCCCCCCcccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLPHY-IP--QGSTPRIVKLGDNPGCPCGGTHV  198 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~~~-~~--~~~~vRvv~ig~~d~~~CgGTHV  198 (227)
                      .+|++++.    +||++||++|++|+||+..+++++||.+++..   .+... ++  ..+.||+|+|||...++|+||||
T Consensus        85 ~lt~edl~----~IEk~m~~iI~~n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~~~~~Iriy~ig~~~~D~c~GpHv  160 (614)
T PLN02837         85 PLTDKDLK----RIKKEMDRIISRNLPLVREEVSREEAQKRIMAINEPYKLEILEGIKEEPITIYHIGEEWWDLCAGPHV  160 (614)
T ss_pred             CCCHHHHH----HHHHHHHHHHHcCCCEEEEEecHHHHHHHHHHcCCchhHHHhccCCCCeEEEEEECCeEEEecCCCCc
Confidence            45667766    59999999999999999999999999987531   22111 11  24579999999833788999999


Q ss_pred             cccccc--ccEEEEEEEe
Q 027168          199 SDISEI--ISMKVSQIRT  214 (227)
Q Consensus       199 ~nT~eI--g~~~I~~~~~  214 (227)
                      +|||+|  +.|+|++++-
T Consensus       161 ~sTg~I~~~~~kl~~~~g  178 (614)
T PLN02837        161 ERTGKINKKAVELESVAG  178 (614)
T ss_pred             ccccccccceEEEEEeeh
Confidence            999999  8999998863

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.29  E-value=1.2e-11  Score=118.30  Aligned_cols=96  Identities=21%  Similarity=0.317  Sum_probs=76.6

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCC----CCCCCCCCcEEEEECCCCCCCCCccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLP----HYIPQGSTPRIVKLGDNPGCPCGGTH  197 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~----~~~~~~~~vRvv~ig~~d~~~CgGTH  197 (227)
                      .++++++.    +||++||++|++|+||....++++||.+++..   .+.    ...+....||++++|++ .+.|+|||
T Consensus       115 ~it~edl~----~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~~K~~ll~~~~~~~~v~iy~~~~~-~D~c~G~h  189 (639)
T PRK12444        115 SVNVEDLR----KIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDRLKLELLEAIPSGESITLYKQGEF-VDLCRGPH  189 (639)
T ss_pred             CCCHHHHH----HHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCchHHHHHhcCCCCCeEEEEEECCE-EEEcCCcC
Confidence            46677776    59999999999999999999999999998752   111    11233356999999996 67899999


Q ss_pred             cccccccccEEEEEEEee--------CCeEEEEEEE
Q 027168          198 VSDISEIISMKVSQIRTK--------KGTTKVFYSV  225 (227)
Q Consensus       198 V~nT~eIg~~~I~~~~~~--------~~~~Ri~~~~  225 (227)
                      |+|||+|+.|+|++.+..        ++..||+=.+
T Consensus       190 v~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a  225 (639)
T PRK12444        190 LPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVA  225 (639)
T ss_pred             CCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEe
Confidence            999999999999988643        4678887554

>PLN02908 threonyl-tRNA synthetase

Probab=99.14  E-value=1.8e-10  Score=110.86  Aligned_cols=85  Identities=14%  Similarity=0.224  Sum_probs=69.8

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCC----CCCCCCCCcEEEEECCCCCCCCCccccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLP----HYIPQGSTPRIVKLGDNPGCPCGGTHVS  199 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV~  199 (227)
                      .++++++.    .||++|+++|++++||+...+++++|.+++.. .+.    ...+..+.++++++|++ .+.|.||||+
T Consensus       164 ~~t~edl~----~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~-~D~c~Gphv~  238 (686)
T PLN02908        164 TLNEEDFK----PIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPL-VDLCRGPHIP  238 (686)
T ss_pred             CCCHHHHH----HHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCE-EEecCCCCCC
Confidence            35666665    59999999999999999999999999998752 221    12233457999999997 7889999999


Q ss_pred             cccccccEEEEEEEe
Q 027168          200 DISEIISMKVSQIRT  214 (227)
Q Consensus       200 nT~eIg~~~I~~~~~  214 (227)
                      |||+|+.|+|++.+.
T Consensus       239 sTg~ik~f~l~~~~~  253 (686)
T PLN02908        239 NTSFVKAFACLKASS  253 (686)
T ss_pred             CCCccceeEEEEecc
Confidence            999999999999873

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=98.99  E-value=1.2e-09  Score=103.20  Aligned_cols=97  Identities=20%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC--CCCC----CCCCCCCCcEEEEECCCCCCCCCcccc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG--GCLP----HYIPQGSTPRIVKLGDNPGCPCGGTHV  198 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~--~~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV  198 (227)
                      .++++++.+    ||++||++|.+++||....+++++|.+++.  ..++    +..++.+.|+++.+|++..+.|.||||
T Consensus        40 ~~t~eel~~----Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v  115 (563)
T TIGR00418        40 SFTQEDLEK----IEKDMKEIAKKNYPVAKLSVSLEEALEAFKVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHL  115 (563)
T ss_pred             CCCHHHHHH----HHHHHHHHHhcCCCEEEEEECHHHHHHHHhccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcC
Confidence            578888874    999999999999999999999999998875  1221    111245679999999944899999999


Q ss_pred             ccccccccEEEEEEEee--------CCeEEEEEEE
Q 027168          199 SDISEIISMKVSQIRTK--------KGTTKVFYSV  225 (227)
Q Consensus       199 ~nT~eIg~~~I~~~~~~--------~~~~Ri~~~~  225 (227)
                      +|||.|+.|+|.+....        +...||+-.+
T Consensus       116 ~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~  150 (563)
T TIGR00418       116 PNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTA  150 (563)
T ss_pred             CCCCCCceeEEEEeccceEeEcCCCCceEeeeecc
Confidence            99999999999976532        3466776543

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=2.7e-08  Score=93.52  Aligned_cols=83  Identities=20%  Similarity=0.254  Sum_probs=70.6

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCC-C-CCCCCcEEEEECCCCCCCCCccccccc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHY-I-PQGSTPRIVKLGDNPGCPCGGTHVSDI  201 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~-~-~~~~~vRvv~ig~~d~~~CgGTHV~nT  201 (227)
                      .+++++++.+    ||++|+++++++++|....+++++|++.++ .|..+ + .....+.+++.|+| .++|.|+||+||
T Consensus        66 ~~~~~~dl~~----ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~-~yK~~~i~~~~~~~s~y~~~~~-~dlc~gph~~~t  139 (589)
T COG0441          66 EPITPEDLLK----IEKEMKEIAKENLPIEREVVSREEARAPFG-PYKAELIDCKGHPLSEYSQGEF-VDLCRGPHVPST  139 (589)
T ss_pred             CCCCHHHHHH----HHHHHHHHHHhcCceEEEEecHHHHHHHhh-hhHHHHHhcCCCCceeEecCcc-ccccCCCCCCcc
Confidence            4478888885    999999999999999999999999999886 44322 1 12367999999998 899999999999


Q ss_pred             cccccEEEEEEE
Q 027168          202 SEIISMKVSQIR  213 (227)
Q Consensus       202 ~eIg~~~I~~~~  213 (227)
                      +.| .|++++++
T Consensus       140 ~~i-~fkl~~~~  150 (589)
T COG0441         140 GKI-AFKLLKLA  150 (589)
T ss_pred             ceE-EEEEEEec
Confidence            999 99999886

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=97.21  E-value=0.00042  Score=65.35  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=45.7

Q ss_pred             EcCHHHHhhhcCC-CCCCCCCCCCCcEEEEECCCCCCCCCc-cccccccccccEEEEEEEee-----CCeEEEEEEE
Q 027168          156 VLPYEEASMLCGG-CLPHYIPQGSTPRIVKLGDNPGCPCGG-THVSDISEIISMKVSQIRTK-----KGTTKVFYSV  225 (227)
Q Consensus       156 ~~~~~ea~~~~~~-~~~~~~~~~~~vRvv~ig~~d~~~CgG-THV~nT~eIg~~~I~~~~~~-----~~~~Ri~~~~  225 (227)
                      .++++||.+++.- .+....-.++.  ++.+|.+ +++|.| |||+||+.|+.|++++++..     ....||+=++
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~ph~~~t~~~~~fkl~~~~~~g~~~~~~l~Riyg~~  118 (545)
T PRK14799         45 SITLDEVKKAINENVLANVSIENNQ--IVYKGNK-VSIIEDKVSISTNLNPKYFEILNISTHHPNPNEQYVRIRGVA  118 (545)
T ss_pred             cccHHHHHHHHhcCcceeeEeecCc--EEEccCc-eeecCCCCCCCCCCCcceEEEEEeccCCCccCceeEEEEEee
Confidence            4577888877641 22211111333  3358887 899999 99999999999999999853     2356776443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
2zzf_A	752	Crystal Structure Of Alanyl-Trna Synthetase Without		4e-10
2e1b_A	216	Crystal Structure Of The Alax-M Trans-Editing Enzym		9e-05
2ztg_A	739	Crystal Structure Of Archaeoglobus Fulgidus Alanyl-		1e-04

>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without Oligomerization Domain Length = 752

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 47/252 (18%)
Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF- 66
           T+  YY++    +  +K++   K       +IL++T F+P+GGGQP DTG +IV   +  
Sbjct: 516 TRRLYYEDPFMKEFDAKVLRVIKD-----WVILDATAFYPEGGGQPYDTGVLIVNGREVK 570
Query: 67  --------KFIVHDVRS----KDGIVFHYGVVENSGGEFEMELEKGKEV----------- 103
                   K I+H V      K+G++ H G ++       M    G  V           
Sbjct: 571 VTNVQKVGKVIIHKVEDPGAFKEGMIVH-GKIDWKRRIQHMRHHTGTHVLMGALVRVLGR 629
Query: 104 RLWVDESRRKLN-SRPYVEYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEA 162
            +W   S+   + +R  + +   + + EL    KE+E+ AN ++    KV    LP   A
Sbjct: 630 HVWQAGSQLTTDWARLDISHYKRISEEEL----KEIEMLANRIVMEDRKVTWEWLPRTTA 685
Query: 163 S------MLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQI-RTK 215
                  +  GG +P     G   R+VK+ D     CGGTH+     +  +K+ +  R +
Sbjct: 686 EQKYGFRLYQGGVVP-----GREIRVVKIEDWDVQACGGTHLPSTGLVGPIKILRTERIQ 740
Query: 216 KGTTKVFYSVGS 227
            G  ++ ++ G 
Sbjct: 741 DGVERIIFACGE 752

>pdb|2E1B|A Chain A, Crystal Structure Of The Alax-M Trans-Editing Enzyme From Pyrococcus Horikoshii Length = 216

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 47/207 (22%)
Query: 27  SYFKGDDGR------RALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDV-RSKDGI 79
           +Y K   GR       A++L+ TIF+P GGGQP D G I   +      V DV + ++G 
Sbjct: 13  AYLKEAKGRVLEIRDNAILLDQTIFYPTGGGQPHDRGTINGVE------VLDVYKDEEGN 66
Query: 80  VFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYVEYKGSVPQNELQSKTKELE 139
           V+H   V     +F++    G EV L +D   R      Y   +     + L+    E+ 
Sbjct: 67  VWH---VVKEPEKFKV----GDEVELKIDWDYR------YKLMRIHTGLHLLEHVLNEVL 113
Query: 140 LEAN-ALISRG-----GKVMVA----VLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDN- 188
            E N  L+  G     G+  +A    +  Y+E  +        Y+ +G   +I   GD  
Sbjct: 114 GEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQII---SLFNKYVDEGGEVKIWWEGDRR 170
Query: 189 -------PGCPCGGTHVSDISEIISMK 208
                     PCGGTHV DI EI  +K
Sbjct: 171 YTQIRDFEVIPCGGTHVKDIKEIGHIK 197

>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna Synthetase Lacking The C-Terminal Dimerization Domain In Complex With Ala-Sa Length = 739

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query: 1   MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
           +  E   T+  YYD+   L+  +++I   +GD     +IL  + F+P+ GGQ +D G++I
Sbjct: 497 LQNEYPATEKLYYDDPTLLEFEAEVIG-VEGD----FVILNRSAFYPESGGQDNDVGYLI 551
Query: 61  VADSDFKFIVHDVRSKDGIVFH 82
                 KF V DV   DG+V H
Sbjct: 552 ANGG--KFEVVDVLEADGVVLH 571

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	7e-29
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	2e-21
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	5e-20
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	4e-14
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	1e-06

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens} Length = 241

 Score =  107 bits (270), Expect = 7e-29
 Identities = 54/255 (21%), Positives = 91/255 (35%), Gaps = 56/255 (21%)

Query: 1   MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
           M+      KL YY++    +   ++I   +  DG+  ++L+ T F P GGGQ  D G I 
Sbjct: 1   MSLT----KL-YYEDQYIKEFKGEIIEVKE-IDGKFHVLLDQTAFFPGGGGQMGDLGLID 54

Query: 61  VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--- 117
                    V DV  ++G V+H           E E +K K ++  +D  RR    +   
Sbjct: 55  ------GIKVLDVYEEEGKVYHVL---------EKEPKKLKNLQCELDWERRFDGMQQHL 99

Query: 118 --------------------------PYVEYKGSVPQNELQSKTKELELEANALISRGGK 151
                                       V+  G + +  +    +E E EAN LI    +
Sbjct: 100 GQHLLSGCFYDLFGANTCGFHLGKEISTVDIVGFLDEKTI----REAEKEANRLIFENLE 155

Query: 152 VMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQ 211
           V       +E   +               RIV++       C G H  +  ++  +K+ +
Sbjct: 156 VKSYAPSKKELKKVKTRRAL--PKTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRR 213

Query: 212 IRTKKGTTKVFYSVG 226
               K  T++ Y  G
Sbjct: 214 WEKHKNATRIEYVAG 228

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 60/243 (24%), Positives = 94/243 (38%), Gaps = 64/243 (26%)

Query: 1   MNTEVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFII 60
           +  E   T+  YYD+   L+  +++I           +IL  + F+P+ GGQ +D G++I
Sbjct: 497 LQNEYPATEKLYYDDPTLLEFEAEVIGVEGD-----FVILNRSAFYPESGGQDNDVGYLI 551

Query: 61  VADSDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR--- 117
                 KF V DV   DG+V H  VV+        + E G +V+  +D   R  + R   
Sbjct: 552 AN--GGKFEVVDVLEADGVVLH--VVK------GAKPEVGTKVKGVIDSDVRWRHMRHHS 601

Query: 118 --------------PYVEYKGS----------------VPQNELQSKTKELELEANALIS 147
                          +V   G+                  + E+    KE+E+ AN  I 
Sbjct: 602 ATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEEI----KEIEMLANREIL 657

Query: 148 RGGKVMVAVLPYEEASML------CGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDI 201
               +    +   EA          GG     +P G   R+V++GD+    CGGTH    
Sbjct: 658 ANKPIKWEWMDRIEAERKFGFRLYQGG-----VPPGRKIRVVQVGDDVQA-CGGTHCRST 711

Query: 202 SEI 204
            EI
Sbjct: 712 GEI 714

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2 Length = 216

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 52/228 (22%), Positives = 82/228 (35%), Gaps = 68/228 (29%)

Query: 7   PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDF 66
            T+  YY++    ++  +++   +  D   A++L+ TIF+P GGGQP D G I   +   
Sbjct: 4   MTRKLYYEDAYLKEAKGRVL---EIRDN--AILLDQTIFYPTGGGQPHDRGTINGVE--- 55

Query: 67  KFIVHDV-RSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR-------- 117
              V DV + ++G V+H               + G EV L +D   R    R        
Sbjct: 56  ---VLDVYKDEEGNVWHVVKEPEK-------FKVGDEVELKIDWDYRYKLMRIHTGLHLL 105

Query: 118 ---------PYVE-YKGS-VPQNEL-------QSKTKEL---ELEANALISRGGKVMVAV 156
                           GS +   +        ++  K         N  +  GG+V    
Sbjct: 106 EHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKEQIISLFNKYVDEGGEVK--- 162

Query: 157 LPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI 204
           + +E                    R  ++ D    PCGGTHV DI EI
Sbjct: 163 IWWEG-----------DR------RYTQIRDFEVIPCGGTHVKDIKEI 193

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752

 Score = 69.8 bits (169), Expect = 4e-14
 Identities = 47/231 (20%), Positives = 84/231 (36%), Gaps = 44/231 (19%)

Query: 4   EVIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVAD 63
           ++  T+  YY++    +  + ++           +IL++T F+P+GGGQP DTG +    
Sbjct: 512 DLPDTRRLYYEDPFMXEFDAXVLRVIXD-----WVILDATAFYPEGGGQPYDTGVL--IV 564

Query: 64  SDFKFIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRLWVDESRRKLNSR------ 117
           +  +  V +V+    ++ H                +G  V   +D  RR  + R      
Sbjct: 565 NGREVXVTNVQXVGXVIIHXVEDPG-------AFXEGMIVHGXIDWXRRIQHMRHHTGTH 617

Query: 118 -----------PYVEYKGSVPQNE------------LQSKTKELELEANALISRGGKVMV 154
                       +V   GS    +             + +  E+E+ AN ++     V  
Sbjct: 618 VLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEELXEIEMLANRIVMEDRXVTW 677

Query: 155 AVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEI 204
             LP   A    G  L    +  G   R+V + D     CGGTH+     +
Sbjct: 678 EWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLV 728

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A Length = 157

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)

Query: 136 KELELEANALISRGGKVMVAVLPYEEASMLCG---GCLPHYIPQGSTPRIVKLGDNPGCP 192
           +E+E  AN  +     + +  LP EEA  + G     L          ++V + D     
Sbjct: 56  REIERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNA 115

Query: 193 CGGTHVSDISEIISMKV 209
           C   H     EI  +K+
Sbjct: 116 CNKEHTKTTGEIGPIKI 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	100.0
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	100.0
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	100.0
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	100.0
1v4p_A	157	Alanyl-tRNA synthetase; alanine-tRNA ligase, riken	99.87
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.71
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.54
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.52

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}

Probab=100.00  E-value=4.1e-55  Score=368.71  Aligned_cols=199  Identities=26%  Similarity=0.313  Sum_probs=171.4

Q ss_pred             cc-eeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEEE
Q 027168            7 PT-KLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYGV   85 (227)
Q Consensus         7 ~t-~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~~   85 (227)
                      || ++|||+|||+++|+|+|++|.+ +++.++|+||+|+|||+|||||+|+|+|.    +  +.|.+|++.+|.++|++ 
T Consensus         1 mT~~~ly~~d~y~~~~~a~V~~~~~-~~~~~~vvLd~T~FYpegGGQ~~D~G~i~----~--~~V~~v~~~~g~i~H~~-   72 (241)
T 3kew_A            1 MSLTKLYYEDQYIKEFKGEIIEVKE-IDGKFHVLLDQTAFFPGGGGQMGDLGLID----G--IKVLDVYEEEGKVYHVL-   72 (241)
T ss_dssp             --CEEGGGTCTTCCEEEECEEEEEE-ETTEEEEEESEECCCCCBTTBCCCCEEET----T--EEEEEEEEETTEEEEEE-
T ss_pred             CcchhhhhhCcccceeEEEEEEEEe-cCCeEEEEEeCCcccCCCCCCCCCEEEEe----e--EEEEEEEEeCCEEEEEE-
Confidence            57 9999999999999999999986 34568999999999999999999999993    3  55999999999999984 


Q ss_pred             eecCCcccccccCCCCEEEEEEeHHHHhhhhccc-----------------------------ccccCCCChhHhhhhHH
Q 027168           86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPY-----------------------------VEYKGSVPQNELQSKTK  136 (227)
Q Consensus        86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~-----------------------------~~~~g~l~~~~l~~~~~  136 (227)
                       .       +++.+|++|.+.|||+||+++|+.|                             .++...+++++++    
T Consensus        73 -~-------~~l~~g~~V~~~vD~~rR~~~~~~HTa~HLL~~al~~~~g~~~~G~~v~~~~~r~Df~~~lt~e~l~----  140 (241)
T 3kew_A           73 -E-------KEPKKLKNLQCELDWERRFDGMQQHLGQHLLSGCFYDLFGANTCGFHLGKEISTVDIVGFLDEKTIR----  140 (241)
T ss_dssp             -S-------SCCCCCSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSSCEEEEEESCCCHHHHH----
T ss_pred             -C-------CcCCCCCEEEEEECHHHhhhHHHHHHHHHHHHHHHHHHCCCCeEeccccCCeEEEEECCCCCHHHHH----
Confidence             2       3577999999999999999999932                             1233456777776    


Q ss_pred             HHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEeeC
Q 027168          137 ELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRTKK  216 (227)
Q Consensus       137 ~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~~~  216 (227)
                      +||++||++|++|+||++.+++++||.+++...++.  .+++.||+|+||++|.+|||||||+|||+||.|+|++.++.+
T Consensus       141 ~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~~~~e--~~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~~~  218 (241)
T 3kew_A          141 EAEKEANRLIFENLEVKSYAPSKKELKKVKTRRALP--KTDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIKIRRWEKHK  218 (241)
T ss_dssp             HHHHHHHHHHHHTCBEEEECCCTTTTTTCCCSSCCC--CCSSCCCEEEETTTEEEECCSCCCSBSGGGCCEEEEEEEEET
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCHHHHHhcChhhcCC--ccCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEEEEEEeccC
Confidence            599999999999999999999999999875333321  246789999999999999999999999999999999999888


Q ss_pred             CeEEEEEEEcC
Q 027168          217 GTTKVFYSVGS  227 (227)
Q Consensus       217 ~~~Ri~~~~~~  227 (227)
                      +.+||+|.+|+
T Consensus       219 ~~~RI~~~~G~  229 (241)
T 3kew_A          219 NATRIEYVAGN  229 (241)
T ss_dssp             TEEEEEEEEGG
T ss_pred             CcEEEEEEECH
Confidence            88999999984

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2

Probab=100.00  E-value=3.2e-49  Score=327.95  Aligned_cols=181  Identities=29%  Similarity=0.400  Sum_probs=152.1

Q ss_pred             cceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe-CCEEEEEEE
Q 027168            7 PTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-DGIVFHYGV   85 (227)
Q Consensus         7 ~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~-~g~i~H~~~   85 (227)
                      ||++|||+|||+++++|+|+++..     .+|+||+|+|||+|||||+|+|+|.    +  |.|.+|++. +|.++|++.
T Consensus         4 ~t~~ly~~d~y~~~~~a~V~~~~~-----~~vvld~T~Fype~GGQ~~D~G~i~----~--~~V~~v~~~~~~~i~H~~~   72 (216)
T 2e1b_A            4 MTRKLYYEDAYLKEAKGRVLEIRD-----NAILLDQTIFYPTGGGQPHDRGTIN----G--VEVLDVYKDEEGNVWHVVK   72 (216)
T ss_dssp             SCCCSTTSCTTCCEEEECBCCCCS-----SCCCBSCCCSCCCCTTCCCCCEEET----T--EEEEEEECCTTCCCEEEES
T ss_pred             hhHHHHhhCcccceeeEEEEEEeC-----CEEEEeCCCccCCCCCCCCCEEEEc----c--EEEEEEEECcCCEEEEEEc
Confidence            699999999999999999999942     2799999999999999999999994    2  669999987 899999853


Q ss_pred             eecCCcccccccCCCCEEEEEEeHHHHhhhhcccc------------------cccCC-CChh----------HhhhhHH
Q 027168           86 VENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV------------------EYKGS-VPQN----------ELQSKTK  136 (227)
Q Consensus        86 ~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~------------------~~~g~-l~~~----------~l~~~~~  136 (227)
                      .       .+.+.+|++|.+.|||+||+.+|+.|.                  .+.|+ ++++          .+...+.
T Consensus        73 ~-------~~~l~~g~~v~~~vD~~rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~g~~v~~~~~r~Df~~~~~lt~el~  145 (216)
T 2e1b_A           73 E-------PEKFKVGDEVELKIDWDYRYKLMRIHTGLHLLEHVLNEVLGEGNWQLVGSGMSVEKGRYDIAYPENLNKYKE  145 (216)
T ss_dssp             C-------GGGCCSSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCEEEECCBCSSEEEEEEECSSCGGGGHH
T ss_pred             c-------CCCcCCCCEEEEEECHHHHHHHHHHhHHHHHHHHHHHHHcCCccceeeeeeEcCCcEEEEEeCCCCCCHHHH
Confidence            2       246889999999999999999999331                  12222 1111          1222366


Q ss_pred             HHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEEEEEe-e
Q 027168          137 ELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVSQIRT-K  215 (227)
Q Consensus       137 ~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~~~~~-~  215 (227)
                      +||++||++|++|+||...++++                    +|+|+||++|.+|||||||+|||+||.|+|++.++ +
T Consensus       146 ~IE~~vn~~I~~~~pv~~~~~~~--------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~~~  205 (216)
T 2e1b_A          146 QIISLFNKYVDEGGEVKIWWEGD--------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSSIG  205 (216)
T ss_dssp             HHHHHHHHHHHHCCBEEEEESSS--------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCC--------------------EEEEEECCEEEECCCCCCcccHhhCceEEEEEEeEEc
Confidence            79999999999999999988652                    89999999999999999999999999999999986 5


Q ss_pred             CCeEEEEEEE
Q 027168          216 KGTTKVFYSV  225 (227)
Q Consensus       216 ~~~~Ri~~~~  225 (227)
                      +|..||+|.+
T Consensus       206 ~g~rRi~~~l  215 (216)
T 2e1b_A          206 RGKQRLEMWL  215 (216)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCEEEEEEEE
Confidence            6888999986

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*

Probab=100.00  E-value=2.4e-47  Score=360.60  Aligned_cols=205  Identities=24%  Similarity=0.366  Sum_probs=175.8

Q ss_pred             CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEE
Q 027168            5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG   84 (227)
Q Consensus         5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~   84 (227)
                      .++|+++||+++|+++++|+|+++..     .+|+||+|+|||+|||||+|+|+|..++  ..|.|.+|++.+|.++|++
T Consensus       513 ~~~T~~l~Y~~~yl~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~g--~~~~V~dv~k~~g~ivH~~  585 (752)
T 2zze_A          513 LPDTRRLYYEDPFMXEFDAXVLRVIX-----DWVILDATAFYPEGGGQPYDTGVLIVNG--REVXVTNVQXVGXVIIHXV  585 (752)
T ss_dssp             SCCCEEHHHHCTTCCEEEEEEEEEET-----TEEEESEECSCCSBTTBCCCCEEEEETT--EEEEEEEEEEETTEEEEEE
T ss_pred             CCCceeecccCCccceEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEeCC--EEEEEEeeeecCcEEEEec
Confidence            47899999999999999999999984     4899999999999999999999998753  4677999999999999985


Q ss_pred             EeecCCcccccccCCCCEEEEEEeHHHHhhhhcccc-----------------ccc----------------CCCChhHh
Q 027168           85 VVENSGGEFEMELEKGKEVRLWVDESRRKLNSRPYV-----------------EYK----------------GSVPQNEL  131 (227)
Q Consensus        85 ~~~~~~~~~~~~l~~G~~v~~~iD~~rR~~~m~~~~-----------------~~~----------------g~l~~~~l  131 (227)
                      ..       .+.+.+|++|.+.|||+||+.+|+.|.                 .+.                ..++++++
T Consensus       586 ~~-------~~~l~vGd~V~~~VD~~rR~~~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~~d~~rfDFs~~~~lt~edL  658 (752)
T 2zze_A          586 ED-------PGAFXEGMIVHGXIDWXRRIQHMRHHTGTHVLMGALVRVLGRHVWQAGSQLTTDWARLDISHYXRISEEEL  658 (752)
T ss_dssp             SC-------GGGCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECSSCEEEEEECSSCCCHHHH
T ss_pred             cc-------cCccCcCCeEEEEEeHHHHHHHHHHhHHHHHHHHHHHHHcCCceeeecCcccCCceEEEEeCCCCCCHHHH
Confidence            32       246789999999999999999999331                 122                23566776


Q ss_pred             hhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEE
Q 027168          132 QSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVS  210 (227)
Q Consensus       132 ~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~  210 (227)
                      .    +||++||++|++|+||++.+++++||.++++..+ ....++++.||+|+||++|.++||||||+|||+||.|+|+
T Consensus       659 ~----~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~~~lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIl  734 (752)
T 2zze_A          659 X----EIEMLANRIVMEDRXVTWEWLPRTTAEQXYGFRLYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXIL  734 (752)
T ss_dssp             H----HHHHHHHHHHHHTCBEEEEEEEHHHHHHHHCGGGCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEE
T ss_pred             H----HHHHHHHHHHHhCCccceeecCHHHHhhcchhhhhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEE
Confidence            6    5999999999999999999999999998865322 2223556789999999999999999999999999999999


Q ss_pred             EEEe-eCCeEEEEEEEcC
Q 027168          211 QIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       211 ~~~~-~~~~~Ri~~~~~~  227 (227)
                      +.++ ++|.+||+|.+|.
T Consensus       735 s~s~i~~GvrRIeavtG~  752 (752)
T 2zze_A          735 RTERIQDGVERIIFACGE  752 (752)
T ss_dssp             EEEEEETTEEEEEEEECC
T ss_pred             EEEEEcCCEEEEEEEeCC
Confidence            9986 6799999999985

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}

Probab=100.00  E-value=2.2e-45  Score=347.21  Aligned_cols=202  Identities=29%  Similarity=0.395  Sum_probs=172.1

Q ss_pred             CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEeCCEEEEEE
Q 027168            5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSKDGIVFHYG   84 (227)
Q Consensus         5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~~g~i~H~~   84 (227)
                      .++|+++||+++|+++++|+|+++..     .+|+||+|+|||+|||||+|+|+|..++  ..|.|.+|++.+|.++|++
T Consensus       501 ~~~T~~l~Y~~~y~~~~~a~Vl~i~~-----~~VVLD~TpFYpEgGGQ~~D~G~I~~~g--~~~~V~dv~k~~g~ivH~~  573 (739)
T 2ztg_A          501 YPATEKLYYDDPTLLEFEAEVIGVEG-----DFVILNRSAFYPESGGQDNDVGYLIANG--GKFEVVDVLEADGVVLHVV  573 (739)
T ss_dssp             CCCCEECTTTCTTCCEEEEEEEEEET-----TEEEESEECCCCSBTTBCCCCEEEEETT--EEEEECEEEEETTEEEEEC
T ss_pred             CCCceeecccCCcccEEEEEEEEEEc-----CEEEEeCCCCCCCCCCCCCCEEEEEECC--EEEEEEEEEEECCEEEEEE
Confidence            57899999999999999999999984     4799999999999999999999998753  4677999999999999974


Q ss_pred             EeecCCccccccc-CCCCEEEEEEeHHHHhhhhccc-----------------ccccC----------------CCChhH
Q 027168           85 VVENSGGEFEMEL-EKGKEVRLWVDESRRKLNSRPY-----------------VEYKG----------------SVPQNE  130 (227)
Q Consensus        85 ~~~~~~~~~~~~l-~~G~~v~~~iD~~rR~~~m~~~-----------------~~~~g----------------~l~~~~  130 (227)
                      .         +.+ .+|++|.+.|||+||+.+|+.|                 +.+.|                .+++++
T Consensus       574 ~---------~~~~~~Gd~V~~~VD~~rR~~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~~~~lT~ed  644 (739)
T 2ztg_A          574 K---------GAKPEVGTKVKGVIDSDVRWRHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTHFRRPSEEE  644 (739)
T ss_dssp             C---------SSCCCTTCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEECSSCCCHHH
T ss_pred             c---------ccCCCCCCEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeCCCCCCHHH
Confidence            2         233 6899999999999999999933                 12222                345666


Q ss_pred             hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCC-CCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEE
Q 027168          131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCL-PHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKV  209 (227)
Q Consensus       131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~-~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I  209 (227)
                      +.    +||++||++|++|+||++.+++++||.++++..+ ....++++.||+|+||+ +.++||||||+|||+||.|+|
T Consensus       645 L~----~IE~~vNeiI~~nlpV~~~~~s~eEA~~~~~l~L~~~~~~~~d~VRVV~IGd-~~elCGGTHV~nTgeIg~fkI  719 (739)
T 2ztg_A          645 IK----EIEMLANREILANKPIKWEWMDRIEAERKFGFRLYQGGVPPGRKIRVVQVGD-DVQACGGTHCRSTGEIGMLKI  719 (739)
T ss_dssp             HH----HHHHHHHHHHHTTCBEEEEEEEHHHHHHHHCGGGGTTCCCCSSEEEEEEETT-EEEECCSCCCSBGGGGCCEEE
T ss_pred             HH----HHHHHHHHHHHcCCCEEEEEeCHHHHHHhCCHhhhcCCCCCCCeEEEEEECC-eeeCcCCcCcccHhHcCcEEE
Confidence            65    5999999999999999999999999998875332 22245567899999999 799999999999999999999


Q ss_pred             EEEEe-eCCeEEEEEEEcC
Q 027168          210 SQIRT-KKGTTKVFYSVGS  227 (227)
Q Consensus       210 ~~~~~-~~~~~Ri~~~~~~  227 (227)
                      ++.++ ++|..||+|.+|+
T Consensus       720 ls~s~i~~GvrRIeavtG~  738 (739)
T 2ztg_A          720 LKVESIQDGVIRFEFAAGE  738 (739)
T ss_dssp             EEEEEEETTEEEEEEEESC
T ss_pred             EEEeEEcCCEEEEEEEecC
Confidence            99986 6799999999985

>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A

Probab=99.87  E-value=7e-22  Score=155.74  Aligned_cols=101  Identities=21%  Similarity=0.358  Sum_probs=85.6

Q ss_pred             cCCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCC-CCCC-CCCC-CCcEEEEECCCCCCCCCccccc
Q 027168          123 KGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC-LPHY-IPQG-STPRIVKLGDNPGCPCGGTHVS  199 (227)
Q Consensus       123 ~g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~~~-~~~~-~~vRvv~ig~~d~~~CgGTHV~  199 (227)
                      ...++++++.+    ||++||++|++|+||...+++++||.++++.. +... ++.. +.||+|+||++|.++||||||+
T Consensus        47 ~~~~t~e~l~~----IE~~~n~~I~~~~pi~~~~~~~~eA~~~f~~~~~~~~~~~~~~~~vrv~~ig~~~~~~C~GtHv~  122 (157)
T 1v4p_A           47 DRKPSDEEIRE----IERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTK  122 (157)
T ss_dssp             SSCCCHHHHHH----HHHHHHHHHHHTCBCEEEEEEHHHHHHHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCCCS
T ss_pred             CCCCCHHHHHH----HHHHHHHHHHcCCCEEEEEeCHHHHHHhhCccccccccCCCCCCeEEEEEECCeeEeCCCCCccC
Confidence            45789999885    99999999999999999999999999987642 2211 2222 5799999999999999999999


Q ss_pred             cccccccEEEEEEEe--eCCeEEEEEEEcC
Q 027168          200 DISEIISMKVSQIRT--KKGTTKVFYSVGS  227 (227)
Q Consensus       200 nT~eIg~~~I~~~~~--~~~~~Ri~~~~~~  227 (227)
                      |||+||.|+|++.+.  +++.+||+|.++|
T Consensus       123 ~Tg~I~~fki~~~~~~~~~~~l~v~~~v~~  152 (157)
T 1v4p_A          123 TTGEIGPIKIRKVRFRKSKGLLEIHFELLE  152 (157)
T ss_dssp             BGGGTCCEEEEEEEEETTTTEEEEEEEEC-
T ss_pred             ChhhcceEEEEEEEecCCCcEEEEEEEEee
Confidence            999999999999975  5688999999986

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=99.71  E-value=2.9e-17  Score=136.50  Aligned_cols=97  Identities=15%  Similarity=0.233  Sum_probs=78.8

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC---CCC----CC-CCCCCCcEEEEECCCCCCCCCc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG---CLP----HY-IPQGSTPRIVKLGDNPGCPCGG  195 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~---~~~----~~-~~~~~~vRvv~ig~~d~~~CgG  195 (227)
                      ..++++++.    +||++||++|++|+||+..+++++||.+++..   .++    .. .++++.||+|++|++ .++|+|
T Consensus       110 ~~~t~edl~----~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k~~l~~~~~~~~~~v~vy~~g~~-~dlC~G  184 (224)
T 1tke_A          110 RTLTQEDVE----ALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRG  184 (224)
T ss_dssp             SCCCHHHHH----HHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEEESC
T ss_pred             CCCCHHHHH----HHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchHHHHhccccCCCCeeEEEEeCCE-EEECCC
Confidence            356788877    49999999999999999999999999987631   111    11 335678999999998 799999


Q ss_pred             cccccccccccEEEEEEEe--------eCCeEEEEEEE
Q 027168          196 THVSDISEIISMKVSQIRT--------KKGTTKVFYSV  225 (227)
Q Consensus       196 THV~nT~eIg~~~I~~~~~--------~~~~~Ri~~~~  225 (227)
                      |||+|||+||.|+|++.+.        .+...||+-++
T Consensus       185 ~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a  222 (224)
T 1tke_A          185 PHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTA  222 (224)
T ss_dssp             CCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEE
T ss_pred             cCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEec
Confidence            9999999999999999864        12368998765

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.54  E-value=9.3e-15  Score=138.31  Aligned_cols=98  Identities=17%  Similarity=0.284  Sum_probs=79.3

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC-CCCC----CCCCCCCCcEEEEECCCCCCCCCcccc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG-GCLP----HYIPQGSTPRIVKLGDNPGCPCGGTHV  198 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~-~~~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV  198 (227)
                      ..+|++++.    +||++||++|++|+||...+++++||.++++ ..+.    ..++.++.||+|++|++ .++|+||||
T Consensus       112 ~~~t~edl~----~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~~li~~~~~~~~vrv~~~g~~-~dlC~G~Hv  186 (645)
T 1nyr_A          112 QNISSDDFE----QIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHV  186 (645)
T ss_dssp             SCCCSTTHH----HHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCC
T ss_pred             CCCCHHHHH----HHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchHHHhhcCCCCCeeEEEEECCE-EEecCCccc
Confidence            346777777    5999999999999999999999999999886 2221    22344468999999998 789999999


Q ss_pred             ccccccccEEEEEEEe--------eCCeEEEEEEEc
Q 027168          199 SDISEIISMKVSQIRT--------KKGTTKVFYSVG  226 (227)
Q Consensus       199 ~nT~eIg~~~I~~~~~--------~~~~~Ri~~~~~  226 (227)
                      +|||+||.|+|++.+.        .+...||+-.+.
T Consensus       187 ~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~  222 (645)
T 1nyr_A          187 PSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAF  222 (645)
T ss_dssp             SCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEE
T ss_pred             CCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhc
Confidence            9999999999999962        223678876653

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.52  E-value=1.2e-14  Score=137.38  Aligned_cols=85  Identities=16%  Similarity=0.244  Sum_probs=72.0

Q ss_pred             CCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcC---CCCC-----CCCCCCCCcEEEEECCCCCCCCCcc
Q 027168          125 SVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCG---GCLP-----HYIPQGSTPRIVKLGDNPGCPCGGT  196 (227)
Q Consensus       125 ~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~---~~~~-----~~~~~~~~vRvv~ig~~d~~~CgGT  196 (227)
                      .+|++++.+    ||++||++|++|+||...+++++||.+++.   .++.     ..++.++.||+|++|+| .++|+||
T Consensus       111 ~~t~edl~~----IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk~~li~~~~~~~~~v~vy~~g~~-~dlC~Gp  185 (642)
T 1qf6_A          111 TLTQEDVEA----LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRGP  185 (642)
T ss_dssp             CCCHHHHHH----HHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHHHHHHHHHSCTTCCCEEEEETTE-EECCSSC
T ss_pred             CCCHHHHHH----HHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcchhhhhhcccCCCCceEEEEECCE-EEecCCC
Confidence            467888774    999999999999999999999999998753   2222     22344468999999998 7999999


Q ss_pred             ccccccccccEEEEEEEe
Q 027168          197 HVSDISEIISMKVSQIRT  214 (227)
Q Consensus       197 HV~nT~eIg~~~I~~~~~  214 (227)
                      ||+|||+||.|+|++++.
T Consensus       186 Hv~~Tg~I~~fkl~~~~~  203 (642)
T 1qf6_A          186 HVPNMRFCHHFKLMKTAG  203 (642)
T ss_dssp             CCSBGGGCCSEEEEEEEE
T ss_pred             ccCCCCcceeEEEeeecc
Confidence            999999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d2e1ba1	87	b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-t	4e-12
d1v4pa_	151	d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeo	2e-05

>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 87

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: AlaX-M N-terminal domain-like
domain: AlaX-M trans-editing enzyme, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.9 bits (140), Expect = 4e-12
 Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 8   TKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFK 67
           T+  YY++    ++  +++          A++L+ TIF+P GGGQP D G I   +    
Sbjct: 5   TRKLYYEDAYLKEAKGRVLEIRDN-----AILLDQTIFYPTGGGQPHDRGTINGVE---- 55

Query: 68  FIVHDVRSKDGIVFHYGVVENSGGEFEMELEKGKEVRL 105
            ++   + ++G V+H               + G EV L
Sbjct: 56  -VLDVYKDEEGNVWHVVKEPEK-------FKVGDEVEL 85

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 151

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.4 bits (96), Expect = 2e-05
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 151 KVMVAVLPYEEASMLCGGCLPHYI---PQGSTPRIVKLGDNPGCPCGGTHVSDISEIISM 207
            + +  LP EEA  + G  +             ++V + D     C   H     EI  +
Sbjct: 71  PIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPI 130

Query: 208 KVSQIRTK--KGTTKVFYSV 225
           K+ ++R +  KG  ++ + +
Sbjct: 131 KIRKVRFRKSKGLLEIHFEL 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d2e1ba1	87	AlaX-M trans-editing enzyme, N-terminal domain {Py	99.92
d1v4pa_	151	Hypothetical protein PH0574 {Archaeon Pyrococcus h	99.9
d2e1ba2	129	AlaX-M trans-editing enzyme, C-terminal domain {Py	99.9
d1nyra3	179	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.65
d1tkea2	162	Threonyl-tRNA synthetase (ThrRS), second 'addition	99.31

>d2e1ba1 b.43.3.6 (A:1-87) AlaX-M trans-editing enzyme, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: AlaX-M N-terminal domain-like
domain: AlaX-M trans-editing enzyme, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=3.1e-26  Score=161.76  Aligned_cols=85  Identities=32%  Similarity=0.532  Sum_probs=71.9

Q ss_pred             CCcceeceeccccceEeeeEEEEEEecCCCeEEEEEccccccCCCCCCCCCeEEEEecCCCcEEEEEEEEEe-CCEEEEE
Q 027168            5 VIPTKLDYYDNMLKLQSTSKLISYFKGDDGRRALILESTIFHPQGGGQPSDTGFIIVADSDFKFIVHDVRSK-DGIVFHY   83 (227)
Q Consensus         5 ~~~t~~ly~~~~y~~~~~a~Vl~i~~~~~~~~~vvld~T~Fyp~gGGQ~~D~G~i~~~~~~~~~~V~~v~~~-~g~i~H~   83 (227)
                      +.||++|||+|||+++++|+|+++..     .+|+||+|+|||+|||||+|+|+|.    .  +.|.+|++. +|.++|+
T Consensus         2 ~~mT~~ly~~d~y~~e~~a~V~~i~~-----~~vild~T~FYpegGGQ~~D~G~i~----~--~~V~~v~k~~~~~i~H~   70 (87)
T d2e1ba1           2 INMTRKLYYEDAYLKEAKGRVLEIRD-----NAILLDQTIFYPTGGGQPHDRGTIN----G--VEVLDVYKDEEGNVWHV   70 (87)
T ss_dssp             CSSCCCSTTSCTTCCEEEECBCCCCS-----SCCCBSCCCSCCCCTTCCCCCEEET----T--EEEEEEECCTTCCCEEE
T ss_pred             cchhhHHhhcCCcccEEEEEEEEEeC-----CEEEEeccccccCCCCCCCCEEEEe----e--EEEEEEEEeCCCEEEEE
Confidence            35799999999999999999999863     3799999999999999999999992    3  349999764 6789997


Q ss_pred             EEeecCCcccccccCCCCEEEEEE
Q 027168           84 GVVENSGGEFEMELEKGKEVRLWV  107 (227)
Q Consensus        84 ~~~~~~~~~~~~~l~~G~~v~~~i  107 (227)
                      +  ..     .+.|++|++|.++|
T Consensus        71 ~--~~-----~~~l~vGd~V~~~I   87 (87)
T d2e1ba1          71 V--KE-----PEKFKVGDEVELKI   87 (87)
T ss_dssp             E--SC-----GGGCCSSSCEEEEE
T ss_pred             e--cC-----CCCCCCCCEEEEEC
Confidence            4  21     35789999999986

>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: Hypothetical protein PH0574
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=2e-24  Score=167.59  Aligned_cols=101  Identities=20%  Similarity=0.344  Sum_probs=85.8

Q ss_pred             cccCCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCC--C-CCCCCcEEEEECCCCCCCCCccc
Q 027168          121 EYKGSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHY--I-PQGSTPRIVKLGDNPGCPCGGTH  197 (227)
Q Consensus       121 ~~~g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~--~-~~~~~vRvv~ig~~d~~~CgGTH  197 (227)
                      ++.+.++++++.+    ||+.||++|++|.||++.+++++||.++++..+...  . +..+.+|+|.||++|.+||||||
T Consensus        45 ~~~~~~t~e~l~~----iE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~iriv~i~~~d~~~CgGTH  120 (151)
T d1v4pa_          45 KFDRKPSDEEIRE----IERLANEKVKENAPIKIYELPREEAEKMFGEDMYDLFPVPEDVRILKVVVIEDWNVNACNKEH  120 (151)
T ss_dssp             ECSSCCCHHHHHH----HHHHHHHHHHHTCBCEEEEEEHHHHHHHHGGGGSCSSCCCTTCCEEEEEEETTTEEEECCSCC
T ss_pred             eccccchhHHHHH----HHHHHHHhhhcccccceEEeecccccccccccccccccCCccccceEEEeecCceeeCCCCCc
Confidence            3456788888874    999999999999999999999999999876433321  1 22466999999999999999999


Q ss_pred             cccccccccEEEEEEEe--eCCeEEEEEEE
Q 027168          198 VSDISEIISMKVSQIRT--KKGTTKVFYSV  225 (227)
Q Consensus       198 V~nT~eIg~~~I~~~~~--~~~~~Ri~~~~  225 (227)
                      |+|||+||.|+|++++.  .+|.+||+|.+
T Consensus       121 V~~T~eIg~~kI~~~~~~~~kg~~Ri~f~l  150 (151)
T d1v4pa_         121 TKTTGEIGPIKIRKVRFRKSKGLLEIHFEL  150 (151)
T ss_dssp             CSBGGGTCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             cCChhhceeEEEEEEEeeccCCcEEEEEEe
Confidence            99999999999999873  46899999986

>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: AlaX-like
domain: AlaX-M trans-editing enzyme, C-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.90  E-value=6e-24  Score=160.73  Aligned_cols=75  Identities=27%  Similarity=0.381  Sum_probs=66.4

Q ss_pred             hhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCCCCCCCCCCCCcEEEEECCCCCCCCCccccccccccccEEEE
Q 027168          131 LQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGCLPHYIPQGSTPRIVKLGDNPGCPCGGTHVSDISEIISMKVS  210 (227)
Q Consensus       131 l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~~~~~~~~~~~vRvv~ig~~d~~~CgGTHV~nT~eIg~~~I~  210 (227)
                      +.+..++||+.+|++|.++.||...+.                    +.+|+|+|+++|.+|||||||+||++||.|+|+
T Consensus        53 l~~~~~~ie~~~n~~I~~~~~v~~~~~--------------------~~~Riv~I~~~d~~~CgGTHV~~T~eIg~i~I~  112 (129)
T d2e1ba2          53 LNKYKEQIISLFNKYVDEGGEVKIWWE--------------------GDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKL  112 (129)
T ss_dssp             GGGGHHHHHHHHHHHHHHCCBEEEEES--------------------SSCEEEEETTSCEECCCSCCCSBGGGTCCEEEE
T ss_pred             cchHHHHHHHHHHHHHHhccchhhhhc--------------------ccceEEEeccccccccCCCCCcchhhCccEEEE
Confidence            344556899999999999999987652                    357999999999999999999999999999999


Q ss_pred             EEEe-eCCeEEEEEEE
Q 027168          211 QIRT-KKGTTKVFYSV  225 (227)
Q Consensus       211 ~~~~-~~~~~Ri~~~~  225 (227)
                      +.++ ++|..||+|.+
T Consensus       113 ~~~~~gkg~~RI~~~l  128 (129)
T d2e1ba2         113 KRSSIGRGKQRLEMWL  128 (129)
T ss_dssp             EEEEEETTEEEEEEEE
T ss_pred             EEEEEeCCcEEEEEEe
Confidence            9986 58999999987

>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.65  E-value=2.1e-16  Score=125.08  Aligned_cols=85  Identities=19%  Similarity=0.316  Sum_probs=72.4

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCCC-CC----CCCCCCCCcEEEEECCCCCCCCCcccc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGGC-LP----HYIPQGSTPRIVKLGDNPGCPCGGTHV  198 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~~-~~----~~~~~~~~vRvv~ig~~d~~~CgGTHV  198 (227)
                      .++++++|..    ||+.||++|++++||+...+++++|.++++.. +.    ...+.++.++++..|++ .++|+||||
T Consensus        50 ~~lt~edl~~----IE~~m~~iI~~~~~i~~~~~~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~~-~dlC~G~Hv  124 (179)
T d1nyra3          50 QNISSDDFEQ----IEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDF-TDLCRGVHV  124 (179)
T ss_dssp             SCCCSTTHHH----HHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTE-EEECCSCCC
T ss_pred             ccCCHHHHHH----HHHHHHHHHHhhcceEEEEcCHHHHHHHhccCccceehhhhcCCCCcEEEEeeCCE-EEecCCCCC
Confidence            4578888874    99999999999999999999999999987532 11    22334567999999998 899999999


Q ss_pred             ccccccccEEEEEEE
Q 027168          199 SDISEIISMKVSQIR  213 (227)
Q Consensus       199 ~nT~eIg~~~I~~~~  213 (227)
                      +|||+||.|+|++++
T Consensus       125 ~~T~~I~~fki~~~s  139 (179)
T d1nyra3         125 PSTAKIKEFKLLSTA  139 (179)
T ss_dssp             SCGGGCCEEEEEEEE
T ss_pred             ccccccCceEEEEee
Confidence            999999999999986

>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: ThrRS/AlaRS common domain
family: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
domain: Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=1.4e-12  Score=100.93  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             CCCChhHhhhhHHHHHHHHHHHHHcCCceEEEEcCHHHHhhhcCC-CCC-------CCCCCCCCcEEEEECCCCCCCCCc
Q 027168          124 GSVPQNELQSKTKELELEANALISRGGKVMVAVLPYEEASMLCGG-CLP-------HYIPQGSTPRIVKLGDNPGCPCGG  195 (227)
Q Consensus       124 g~l~~~~l~~~~~~IE~~~n~~I~~~~~v~~~~~~~~ea~~~~~~-~~~-------~~~~~~~~vRvv~ig~~d~~~CgG  195 (227)
                      ..++.+++..    ||.+|+++|.++.|+....+++++|.+++.. ..+       ........+.++.+|++ .++|.|
T Consensus        48 ~~~~~edl~~----ie~~m~~ii~~~~~~~~~~~s~~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~~-~dlc~G  122 (162)
T d1tkea2          48 RTLTQEDVEA----LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEY-VDMCRG  122 (162)
T ss_dssp             SCCCHHHHHH----HHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTE-EEEESC
T ss_pred             CCCCHHHHHH----HHHHHHHHHHhcCCceEEEechHHHHHHHHHhhcchhhheeeccccccccceeeccCce-EeecCC
Confidence            4577888774    9999999999999999999999999987542 111       11244567999999998 799999


Q ss_pred             cccccccccccEEEEEEEee------CC--eEEEEEE
Q 027168          196 THVSDISEIISMKVSQIRTK------KG--TTKVFYS  224 (227)
Q Consensus       196 THV~nT~eIg~~~I~~~~~~------~~--~~Ri~~~  224 (227)
                      |||+|||.|+.|+|++++..      ++  ..||+=+
T Consensus       123 phv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiyg~  159 (162)
T d1tkea2         123 PHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGT  159 (162)
T ss_dssp             CCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEE
T ss_pred             CccccCcccceEEEEEechhhcCCCCCCcccEEEEEE
Confidence            99999999999999998631      12  4788744