Citrus Sinensis ID: 027180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------
Protein Sequence
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEccccccccccccccccEEEEEccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEEEEccEEEEEEcccccccccccccccccccccccEEEcccccccccccHHHHHHHccccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEEEEEEcccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHccccccHHEEEEEEEEEEcccEEEEEEcccEEcccccEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mlyalsapktciscprgppfpqkrqvstrlcvhaslpadnggfkveytpwlivglgnpgikyhgtrhnvGFEMIDHIAQAQRIAMNTIQSKALigigsigevpillakpqaymnfsgesiYDEMSLMNgvlrlqpkgghghhnglKSVMNHLdgcrefprlcigignppgkmDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGfdqnisrfnmgqkykyhav
Flexible Loop (DISEMBL)
mlyalsapktciscprgppFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNgfdqnisrfnmgqkykyhav
Low Complexity Region (SEG)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered region (IsUnstruct)
*************************VSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ*******
Disordered Region (DISOPRED)
*******PKT***************************************WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN**********
Disordered Region (DISEMBL)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Disordered Region (DISPRO)
*******PKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	227	2.2.26 [Sep-21-2011]
Q9FKN4	246	Chloroplastic group IIB i	yes	no	1.0	0.922	0.646	5e-86
Q9LF14	240	Chloroplastic group IIB i	no	no	0.907	0.858	0.683	4e-81
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.867	0.760	0.655	7e-76
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.929	0.824	0.609	8e-75
Q6NLS8	219	Peptidyl-tRNA hydrolase,	no	no	0.784	0.812	0.538	1e-53
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.744	0.586	0.526	8e-53
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.757	0.688	0.513	2e-50
Q181A2	186	Peptidyl-tRNA hydrolase O	yes	no	0.735	0.897	0.378	8e-35
B8G3X3	188	Peptidyl-tRNA hydrolase O	yes	no	0.735	0.888	0.387	8e-32
A9KR32	191	Peptidyl-tRNA hydrolase O	yes	no	0.735	0.874	0.4	9e-32

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  317 bits (812), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 183/246 (74%), Gaps = 19/246 (7%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 S-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 161
           S                 IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 162 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 221
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 222 YKYHAV 227
           YK+H V
Sbjct: 241 YKFHKV 246

Required for the splicing of group IIB introns in chloroplasts.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  300 bits (769), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 153/224 (68%), Positives = 174/224 (77%), Gaps = 18/224 (8%)

Query: 21  PQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQA 80
           P  R+   R+C   S   D+  FKVEYTPWLIVGLGNPG KYHGTRHNVGFEMID +A+ 
Sbjct: 18  PVFRKQRFRVCSSTSGGEDDR-FKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDVLARK 76

Query: 81  QRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-----------------IYDE 123
           + + MNTIQSKALIGIG+I +VPILLAKPQ YMNFSGES                 IYDE
Sbjct: 77  EGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLRHILMIYDE 136

Query: 124 MSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFS 183
           M+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LLQKFS
Sbjct: 137 MALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLLQKFS 196

Query: 184 PIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
           P+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct: 197 PLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  283 bits (724), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 141/215 (65%), Positives = 163/215 (75%), Gaps = 18/215 (8%)

Query: 30  LCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ 89
           + V AS+P D      EYTPWLI GLGNPG KYHGTRHNVGFEM+D IA+ + I MNTIQ
Sbjct: 46  IAVVASVP-DPAARPAEYTPWLIAGLGNPGSKYHGTRHNVGFEMVDRIARDEGITMNTIQ 104

Query: 90  SKALIGIGSIGEVPILLAKPQAYMNFSGESI-----------------YDEMSLMNGVLR 132
           SK+L+GIGSIGEVP+LL KPQ+Y+N+SGE+I                 YDEMSL NGVLR
Sbjct: 105 SKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLRHILVMYDEMSLPNGVLR 164

Query: 133 LQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA 192
           LQ KGGHG HNGL++VM  LD  RE PRL IGIG+PPGKMD +A+LLQKFS  ER QID 
Sbjct: 165 LQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTRAFLLQKFSSEERLQIDT 224

Query: 193 ALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
           ALEQGV+AVRTLVL GF  +I RFN+ QKYK+H+V
Sbjct: 225 ALEQGVDAVRTLVLKGFSGSIERFNLVQKYKFHSV 259

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  280 bits (715), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 147/241 (60%), Positives = 172/241 (71%), Gaps = 30/241 (12%)

Query: 4   ALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGIKYH 63
           +L+AP   I  PR  PF           V +S+P D     VEYTPWLI GLGNPG KY+
Sbjct: 29  SLTAPLHRIRRPR--PF----------TVVSSVP-DPAAGPVEYTPWLIAGLGNPGNKYY 75

Query: 64  GTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESI--- 120
           GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+ KPQ+YMN+SGE+I   
Sbjct: 76  GTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPL 135

Query: 121 --------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 166
                         YD+ SL NGVLRLQ KGGHG HNGL++V+ HLDG REFPRL IGIG
Sbjct: 136 AAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIG 195

Query: 167 NPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHA 226
           +PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF  +  RFN+ QKYK+H 
Sbjct: 196 SPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHR 255

Query: 227 V 227
           V
Sbjct: 256 V 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  209 bits (532), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 105/195 (53%), Positives = 135/195 (69%), Gaps = 17/195 (8%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           + PWL +GLGNPG KY GTRHN+GFEMID  A++  I MN +  KA++G G + ++P++L
Sbjct: 16  HRPWLFLGLGNPGDKYKGTRHNIGFEMIDVFAESVGIQMNLVNFKAIMGQGFVADLPVIL 75

Query: 107 AKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 149
           AKPQ YMN SGES                 ++D+M L  GVLRLQ KGGHG HNGLKSVM
Sbjct: 76  AKPQTYMNLSGESSGPLAAYYKLPLNRVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVM 135

Query: 150 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 209
           NH  G REF RL IGIG PPG+MD KA+LLQKFS   RE++D AL +GV+A++ ++   F
Sbjct: 136 NHFRGNREFARLRIGIGKPPGQMDPKAFLLQKFSMPARERMDKALAEGVDALKLVLAKDF 195

Query: 210 DQNISRFNMGQKYKY 224
            ++   FN+ QKYK+
Sbjct: 196 GESWRLFNVEQKYKH 210

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  206 bits (525), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/186 (52%), Positives = 131/186 (70%), Gaps = 17/186 (9%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct: 94  PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           PQ +MN SGES                 +YD++ L  G LRL PKGGHG HNG++S+++ 
Sbjct: 154 PQTFMNLSGESVGQIVSFYKIPLKQVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDR 213

Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
           L G R+FPRL IGIG PPGKMD   ++L++F+  E+E++D   + G+EA+R L+L GF++
Sbjct: 214 LKGSRDFPRLRIGIGRPPGKMDTANFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNK 273

Query: 212 NISRFN 217
           + +  N
Sbjct: 274 SATFVN 279

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  199 bits (505), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/189 (51%), Positives = 131/189 (69%), Gaps = 17/189 (8%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
           PWL VGLGNPG  Y GTRHNVGFEMID IA+A+ I+++++Q KA++G G IG+ PI+LAK
Sbjct: 55  PWLFVGLGNPGKVYQGTRHNVGFEMIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAK 114

Query: 109 PQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           PQ +MN SGES+                 YD++ L    LRL PKGGHG HNG++S++NH
Sbjct: 115 PQTFMNASGESVGQLVSYFKIPLNQVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINH 174

Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
           L   R+FPRL IGIG PPGKMD   ++L+ F+  E+E++D A  +G+EAVR + L GF++
Sbjct: 175 LKQNRDFPRLRIGIGRPPGKMDPANFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNK 234

Query: 212 NISRFNMGQ 220
           + +  N  Q
Sbjct: 235 SATYVNTAQ 243

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q181A2|PTH_CLOD6 Peptidyl-tRNA hydrolase OS=Clostridium difficile (strain 630) GN=pth PE=3 SV=1

 Score =  147 bits (370), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 18/185 (9%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           +++VGLGNPG KY  TRHNVGF++ID +A+   I++  I+ KALIG G +G   +LL KP
Sbjct: 2   YVVVGLGNPGKKYEKTRHNVGFDVIDILAKEYNISVTKIKHKALIGEGRVGTEKVLLVKP 61

Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
           Q YMN SGE+                 +YD++ L  G +R++ KG  G HNG+KS+   L
Sbjct: 62  QTYMNLSGETLIDIYKYYKVDLSNIVVVYDDIDLEVGKIRIRKKGSGGTHNGMKSITKCL 121

Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
            G  +FPR+ +G+  P    D+  ++L +F   E + I+ ALE+  +A+ +++    D +
Sbjct: 122 -GSNDFPRVRVGVSKPEAGQDLADFVLSRFRKEESDNINEALEKAADAIDSIIRENIDMS 180

Query: 213 ISRFN 217
           ++++N
Sbjct: 181 MNKYN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium difficile (strain 630) (taxid: 272563)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B8G3X3|PTH_CHLAD Peptidyl-tRNA hydrolase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pth PE=3 SV=1

 Score =  137 bits (344), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 72/186 (38%), Positives = 104/186 (55%), Gaps = 19/186 (10%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           WLIVGLGNPG +Y  TRHN+GF  ++ +A+   +     ++K+ I  G I    + L KP
Sbjct: 2   WLIVGLGNPGERYARTRHNIGFRSVETLAERHGLTFRNQRAKSEIAEGIIRGQRVALVKP 61

Query: 110 QAYMNFSGES------------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           Q YMN SG++                  IYD++ L    LRL+ +G  G HNG++S++  
Sbjct: 62  QTYMNLSGQAVAALRQWYKIDPARELLVIYDDLDLPFAKLRLRERGSAGTHNGMRSIVGQ 121

Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
           L G  EFPRL IGIG PPG+MD   Y+L +F+P E   +   L +  +AV  +V  G   
Sbjct: 122 L-GTTEFPRLRIGIGQPPGQMDAADYVLSRFTPEEEAVLPEVLARVADAVEVVVSEGLTA 180

Query: 212 NISRFN 217
            ++R+N
Sbjct: 181 AMNRYN 186

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A9KR32|PTH_CLOPH Peptidyl-tRNA hydrolase OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=pth PE=3 SV=1

 Score =  136 bits (343), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 18/185 (9%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
           ++I+GLGNP  +Y  TRHN+GF+ I  +A    I+++T + KA+ G G IG   ++LAKP
Sbjct: 2   YIIIGLGNPTREYEATRHNIGFDAITRLADDNNISLDTKKHKAICGKGMIGGEKVILAKP 61

Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
           Q YMN SGES                 IYD++SL  G LR++ KG  G HNG+K+++ HL
Sbjct: 62  QTYMNLSGESVRELIDFYKVTKEEIIVIYDDISLDVGQLRIRTKGSAGGHNGIKNIIAHL 121

Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
            G  EF R+ IG+G+ P   D+  Y+L +F   E   I  ALE+  +A  T++ +G    
Sbjct: 122 -GSDEFCRIKIGVGDKPKNWDLADYVLARFPKEEEPAIREALEKVSKACETILRDGAKVA 180

Query: 213 ISRFN 217
           ++ FN
Sbjct: 181 MNLFN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) (taxid: 357809)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
224079329	244	predicted protein [Populus trichocarpa]	1.0	0.930	0.75	1e-103
255551384	253	peptidyl-tRNA hydrolase, putative [Ricin	1.0	0.897	0.711	1e-96
449455782	249	PREDICTED: chloroplastic group IIB intro	0.916	0.835	0.753	1e-90
225452074	246	PREDICTED: chloroplastic group IIB intro	0.995	0.918	0.712	5e-90
388501072	247	unknown [Lotus japonicus]	1.0	0.919	0.647	5e-88
358248120	244	uncharacterized protein LOC100804132 [Gl	1.0	0.930	0.663	2e-87
297805938	241	predicted protein [Arabidopsis lyrata su	0.986	0.929	0.647	3e-85
42573527	250	chloroplastic group IIB intron splicing	1.0	0.908	0.646	2e-84
15240875	246	chloroplastic group IIB intron splicing	1.0	0.922	0.646	3e-84
26451849	246	putative CRS2 [Arabidopsis thaliana]	1.0	0.922	0.642	6e-84

>gi|224079329|ref|XP_002305823.1| predicted protein [Populus trichocarpa] gi|222848787|gb|EEE86334.1| predicted protein [Populus trichocarpa]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/244 (75%), Positives = 201/244 (82%), Gaps = 17/244 (6%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           MLYA+S P+TCISCPR   F ++  VS RLCV ASLP +  G KVEYTPWLIVGLGNPG 
Sbjct: 1   MLYAVSTPRTCISCPRSSRFHRRNLVSVRLCVRASLPDNANGVKVEYTPWLIVGLGNPGT 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES- 119
           KYHGTRHNVGFEMID IAQA+ + MNTIQSKALIGIG IGEVPILLAKPQAYMNFSGES 
Sbjct: 61  KYHGTRHNVGFEMIDRIAQAEGVLMNTIQSKALIGIGCIGEVPILLAKPQAYMNFSGESV 120

Query: 120 ----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 163
                           IYDEM+L NG+LR+QPKGGHGHHNG+KSVM+HLDGCREFPRLCI
Sbjct: 121 GPLAAHYKIPLRHILLIYDEMNLPNGILRVQPKGGHGHHNGVKSVMDHLDGCREFPRLCI 180

Query: 164 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 223
           GIGNPPG MDMKA+LLQKFSP EREQIDA+LEQGVEA+RTL+L GF   I+RFN+GQKYK
Sbjct: 181 GIGNPPGTMDMKAFLLQKFSPTEREQIDASLEQGVEAMRTLILGGFTNKITRFNLGQKYK 240

Query: 224 YHAV 227
           YH V
Sbjct: 241 YHKV 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551384|ref|XP_002516738.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223544111|gb|EEF45636.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  358 bits (919), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 180/253 (71%), Positives = 198/253 (78%), Gaps = 26/253 (10%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPAD-NGGFKVEYTPWLIVGLGNPG 59
           MLYA+S P TCISCPR   F  +   STRL +  SLP + NG  K+EYTPWLIVGLGNPG
Sbjct: 1   MLYAVSTPNTCISCPRNSFFRPRHLASTRLSIRVSLPENGNGVAKIEYTPWLIVGLGNPG 60

Query: 60  IKYHGTRHNV--------GFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQA 111
            KYHGTRHNV        GFEMID IA+A+ +AMNTIQSKALIGIG I EVPILL KPQA
Sbjct: 61  NKYHGTRHNVTNASLDLVGFEMIDKIAKAEAVAMNTIQSKALIGIGCIKEVPILLVKPQA 120

Query: 112 YMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDG 154
           YMNFSGES                 IYDEMSL NGV+RLQPKGGHGHHNG+KSVM HLDG
Sbjct: 121 YMNFSGESVGPLAAHYQVPLRHILLIYDEMSLPNGVMRLQPKGGHGHHNGVKSVMEHLDG 180

Query: 155 CREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNIS 214
           CREFPRLCIGIGNPPG MDM+A+LLQKFS  EREQIDAAL QG++AVRTLVL+GF+QNI+
Sbjct: 181 CREFPRLCIGIGNPPGTMDMRAFLLQKFSSTEREQIDAALGQGIDAVRTLVLSGFNQNIT 240

Query: 215 RFNMGQKYKYHAV 227
           RFN+GQKYKYH V
Sbjct: 241 RFNLGQKYKYHKV 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455782|ref|XP_004145630.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus] gi|449519774|ref|XP_004166909.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic-like [Cucumis sativus]

 Score =  338 bits (866), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 171/227 (75%), Positives = 183/227 (80%), Gaps = 19/227 (8%)

Query: 20  FPQKRQ-VSTRLCVHASLP-ADNGGFKVEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHI 77
           FP  +  VSTRL V AS P +D+ G KVEYTPWLIVGLGNPG KYHGTRHNVGFEMID I
Sbjct: 23  FPSTKPLVSTRLSVRASSPDSDSNGLKVEYTPWLIVGLGNPGNKYHGTRHNVGFEMIDSI 82

Query: 78  AQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESI----------------- 120
           AQAQ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNF GES+                 
Sbjct: 83  AQAQGILMNTIQSKALIGIGSIGEVPILLAKPQTYMNFCGESVGPLAAHYQIPLRHVLLT 142

Query: 121 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 180
           YDEM+L NGVLRLQPK GHGHHNG+KSVM HLDG REFPRLCIGIGNPPG MDMKA+LLQ
Sbjct: 143 YDEMNLPNGVLRLQPKAGHGHHNGVKSVMGHLDGRREFPRLCIGIGNPPGTMDMKAFLLQ 202

Query: 181 KFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
           KFS +ER+QIDAALEQGVEAVRTL LNGF Q ++RFN+ QKYKYH V
Sbjct: 203 KFSSVERKQIDAALEQGVEAVRTLALNGFSQRVNRFNLSQKYKYHKV 249

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452074|ref|XP_002284030.1| PREDICTED: chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic [Vitis vinifera] gi|296087264|emb|CBI33638.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/247 (71%), Positives = 193/247 (78%), Gaps = 21/247 (8%)

Query: 1   MLYALSAPKTCISCPRGPP---FPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           MLYA+S P T ISC R      F ++R    RLCV ASLP D  G KVEYTPWLIVGLGN
Sbjct: 1   MLYAVSGPSTSISCRRSLDYHGFRRRRLAPARLCVSASLP-DANGIKVEYTPWLIVGLGN 59

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFEMID I+Q + I +NTIQSKALIGIGSIGEVPILLAKPQAYMNFSG
Sbjct: 60  PGNKYHGTRHNVGFEMIDRISQEEGILLNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 119

Query: 118 ESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 160
           ES+                 YDEM+L NGVLRL P+GGHG+HNGLK+VM HLDGCREFPR
Sbjct: 120 ESVGPLAAYYQVPLRHILVVYDEMNLPNGVLRLAPRGGHGYHNGLKNVMGHLDGCREFPR 179

Query: 161 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 220
           LCIGIGNPPG MDMKAYLLQKFS  ER+QIDAA EQG+ AVR LVLNGF+ + +RFN+GQ
Sbjct: 180 LCIGIGNPPGTMDMKAYLLQKFSFEERKQIDAAQEQGIGAVRNLVLNGFNHSTTRFNLGQ 239

Query: 221 KYKYHAV 227
           KYKYH V
Sbjct: 240 KYKYHKV 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501072|gb|AFK38602.1| unknown [Lotus japonicus]

 Score =  329 bits (844), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 160/247 (64%), Positives = 189/247 (76%), Gaps = 20/247 (8%)

Query: 1   MLYALSAPKTCISCPRGPPFPQ---KRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGN 57
           ML+A SAP  C+S PR   +P    K    TR  V  S+P    G +VEYTPWL+VGLGN
Sbjct: 1   MLHAASAPSLCLSYPRNLHYPSNLTKHPAKTRFSVRCSVPGTKNGAQVEYTPWLVVGLGN 60

Query: 58  PGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSG 117
           PG KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIG+GSIG+VP+LLAKPQ YMNFSG
Sbjct: 61  PGSKYHGTRHNVGFEIIDSLSRAEGILMNTIQSKALIGLGSIGDVPVLLAKPQTYMNFSG 120

Query: 118 ESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPR 160
           E++                 YDE SL NGVLRLQPKGGHGHHNG K+VM HLDG R+FPR
Sbjct: 121 EAVGPLAAYYRIPLRHIILVYDETSLPNGVLRLQPKGGHGHHNGSKNVMGHLDGSRDFPR 180

Query: 161 LCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ 220
           L IGIGNPPG MD +A+LLQKFS +ER+QID +LEQGV+A+RTLVL+GF Q++SRFN+GQ
Sbjct: 181 LAIGIGNPPGSMDSRAFLLQKFSSVERQQIDDSLEQGVQAIRTLVLHGFSQHVSRFNLGQ 240

Query: 221 KYKYHAV 227
           KYKYH V
Sbjct: 241 KYKYHKV 247

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248120|ref|NP_001239818.1| uncharacterized protein LOC100804132 [Glycine max] gi|255645504|gb|ACU23247.1| unknown [Glycine max]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 162/244 (66%), Positives = 186/244 (76%), Gaps = 17/244 (6%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           ML+A+SAP  C+S P    +P      T   V  S+     G KVEYTPWLI+GLGNPG 
Sbjct: 1   MLHAVSAPSFCLSYPGNLHYPPSSVQKTCFSVRCSVSQTKNGAKVEYTPWLIIGLGNPGN 60

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESI 120
           KYHGTRHNVGFE+ID +++A+ I MNTIQSKALIGIGSIGEVPILLAKPQ YMNFSGES+
Sbjct: 61  KYHGTRHNVGFEIIDSLSRAEGIQMNTIQSKALIGIGSIGEVPILLAKPQTYMNFSGESV 120

Query: 121 -----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 163
                            +DE SL NGVLRLQPKGGHGHHNGLK+VM HLDGC  FPRL +
Sbjct: 121 GPLAAYYQVPLRHILLVFDETSLPNGVLRLQPKGGHGHHNGLKNVMGHLDGCSAFPRLAV 180

Query: 164 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 223
           GIGNPPG MD++AYLLQKFS  ER+QIDA+LEQ V AVRT+VLNGFDQ+++RFN+GQKYK
Sbjct: 181 GIGNPPGTMDLRAYLLQKFSVEERKQIDASLEQAVAAVRTVVLNGFDQHVNRFNLGQKYK 240

Query: 224 YHAV 227
           YH V
Sbjct: 241 YHKV 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805938|ref|XP_002870853.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297316689|gb|EFH47112.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/244 (64%), Positives = 183/244 (75%), Gaps = 20/244 (8%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLCVHASLPADNGGFKVEYTPWLIVGLGNPGI 60
           M  + S P T +  P+    P  ++ S+   + ASLP  +   KVEYTPWLIVGLGNPG 
Sbjct: 1   MFCSSSPPITSLLYPKAQKKPNSKRFSS---LRASLPVSDNKLKVEYTPWLIVGLGNPGF 57

Query: 61  KYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES- 119
           KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQAYMNFSGES 
Sbjct: 58  KYYGTRHNIGFEMIDHIARATEISMNTIQSKALVGIGSVGEVPILLVKPQAYMNFSGESV 117

Query: 120 ----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCI 163
                           IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL I
Sbjct: 118 GPLAAYYQIPLRHILMIYDDMGLPNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSI 177

Query: 164 GIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYK 223
           GIGNPPG MDMKA+LLQKFSP+ER+QIDA LEQGVE V+TLV  GF  +ISRFN+GQKYK
Sbjct: 178 GIGNPPGNMDMKAFLLQKFSPLERKQIDAGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 237

Query: 224 YHAV 227
           +H V
Sbjct: 238 FHTV 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573527|ref|NP_974860.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|332006907|gb|AED94290.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 183/246 (74%), Gaps = 19/246 (7%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 5   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 64

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 65  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 124

Query: 119 S-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 161
           S                 IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 125 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 184

Query: 162 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 221
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 185 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 244

Query: 222 YKYHAV 227
           YK+H V
Sbjct: 245 YKFHKV 250

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240875|ref|NP_198645.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana] gi|75309164|sp|Q9FKN4.1|CRS2A_ARATH RecName: Full=Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic; AltName: Full=CRS2-like protein A; AltName: Full=Chloroplastic RNA splicing factor 2-A; Flags: Precursor gi|9758861|dbj|BAB09443.1| unnamed protein product [Arabidopsis thaliana] gi|90962962|gb|ABE02405.1| At5g38290 [Arabidopsis thaliana] gi|332006908|gb|AED94291.1| chloroplastic group IIB intron splicing facilitator CRS2-A [Arabidopsis thaliana]

 Score =  317 bits (812), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 159/246 (64%), Positives = 183/246 (74%), Gaps = 19/246 (7%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 S-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 161
           S                 IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 162 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 221
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 222 YKYHAV 227
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451849|dbj|BAC43017.1| putative CRS2 [Arabidopsis thaliana]

 Score =  316 bits (809), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 158/246 (64%), Positives = 183/246 (74%), Gaps = 19/246 (7%)

Query: 1   MLYALSAPKTCISCPRGPPFPQKRQVSTRLC-VHASLP-ADNGGFKVEYTPWLIVGLGNP 58
           M  A S+P T    P+   F Q +  S R   + ASLP +DN   K EYTPWLIVGLGNP
Sbjct: 1   MFCASSSPITSPLYPKAYKFSQTKSNSKRFSSLRASLPVSDNKLLKFEYTPWLIVGLGNP 60

Query: 59  GIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGE 118
           G+KY+GTRHN+GFEMIDHIA+A  I+MNTIQSKAL+GIGS+GEVPILL KPQ YMNFSGE
Sbjct: 61  GLKYYGTRHNIGFEMIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGE 120

Query: 119 S-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRL 161
           S                 IYD++ L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL
Sbjct: 121 SVGPLAAYYQIPLRHILMIYDDLGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRL 180

Query: 162 CIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQK 221
            IGIGNPPG MDMKA+LLQKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQK
Sbjct: 181 SIGIGNPPGNMDMKAFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQK 240

Query: 222 YKYHAV 227
           YK+H V
Sbjct: 241 YKFHKV 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	227
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.475	0.432	0.731	8.3e-81
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.475	0.45	0.768	8.5e-77
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.462	0.479	0.590	2.3e-52
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.317	0.25	0.694	6.8e-51
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.744	0.903	0.365	1.6e-22
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.427	0.494	0.371	1.8e-22
UNIPROTKB|P0A7D1	194	pth "peptidyl-tRNA hydrolase"	0.427	0.5	0.329	1.7e-20
TIGR_CMR|SO_1184	195	SO_1184 "peptidyl-tRNA hydrola	0.370	0.430	0.392	2.2e-20
TIGR_CMR|APH_1301	183	APH_1301 "peptidyl-tRNA hydrol	0.308	0.382	0.485	3.9e-19
TIGR_CMR|ECH_0141	198	ECH_0141 "peptidyl-tRNA hydrol	0.339	0.388	0.428	1.3e-18

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 8.3e-81, Sum P(2) = 8.3e-81
 Identities = 79/108 (73%), Positives = 91/108 (84%)

Query:   120 IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLL 179
             IYD+M L NGVLRLQPKGGH  HNGLK+V  HL+GCR +PRL IGIGNPPG MDMKA+LL
Sbjct:   143 IYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMKAFLL 202

Query:   180 QKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
             QKFSP+ER+Q+D  LEQGVE V+TLV  GF  +ISRFN+GQKYK+H V
Sbjct:   203 QKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYKFHKV 250

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 83/108 (76%), Positives = 95/108 (87%)

Query:   120 IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLL 179
             IYDEM+L NGVLRLQPKGG G+HNG+KSVM HLDG R FPRL IGIG PPG MDMKA+LL
Sbjct:   133 IYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMKAFLL 192

Query:   180 QKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKYHAV 227
             QKFSP+E++QI+ ALEQG EAV+TLVLNGF+Q ISRFN+ QKYK+H V
Sbjct:   193 QKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYKFHKV 240

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 2.3e-52, Sum P(2) = 2.3e-52
 Identities = 62/105 (59%), Positives = 79/105 (75%)

Query:   120 IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLL 179
             ++D+M L  GVLRLQ KGGHG HNGLKSVMNH  G REF RL IGIG PPG+MD KA+LL
Sbjct:   106 VHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPKAFLL 165

Query:   180 QKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQKYKY 224
             QKFS   RE++D AL +GV+A++ ++   F ++   FN+ QKYK+
Sbjct:   166 QKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKH 210

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 50/72 (69%), Positives = 59/72 (81%)

Query:    49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAK 108
             PWLIVGLGNPG KY GTRHNVGFEM+D +A A+ I+MNT+  KAL G G IG +PI+LAK
Sbjct:    94 PWLIVGLGNPGKKYQGTRHNVGFEMVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAK 153

Query:   109 PQAYMNFSGESI 120
             PQ +MN SGES+
Sbjct:   154 PQTFMNLSGESV 165

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 68/186 (36%), Positives = 100/186 (53%)

Query:    50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
             ++I GLGNPG +Y  TRHN GF ++D +A+   I +   + K+L+G G I  V +LL KP
Sbjct:     2 FIIAGLGNPGQEYENTRHNAGFMVVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKP 61

Query:   110 QAYMNFSGESIYDEMSLMNGVL-RLQ--------PKGG-----HGHHNGLKSVMNHLD-- 153
             Q YMN SG ++ + +S     L RL         P G       G   G + + + +   
Sbjct:    62 QTYMNLSGTAVQEAVSFYKLPLSRLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL 121

Query:   154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNI 213
             G  E PRL IGIG P    D+K Y+LQ F+  ERE ++  L+   EA+   +  GF++ +
Sbjct:   122 GSEEIPRLKIGIGRP-AVGDVKDYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAM 180

Query:   214 SRFNMG 219
             + FN G
Sbjct:   181 TDFNRG 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 170 (64.9 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
 Identities = 36/97 (37%), Positives = 58/97 (59%)

Query:   121 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 180
             +DE+ L  GV + +  GGHG HNGLK  ++ L   +EF RL +GIG+P  K  +  Y+L 
Sbjct:    95 HDELDLPPGVAKFKQGGGHGGHNGLKDTISKLGNNKEFYRLRLGIGHPGHKDKVAGYVLG 154

Query:   181 KFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 217
             K    E+E +DAA+++ V  +  L+ +G  +  +R +
Sbjct:   155 KAPAKEQECLDAAVDESVRCLEILMKDGLTKAQNRLH 191

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

UNIPROTKB|P0A7D1 pth "peptidyl-tRNA hydrolase" [Escherichia coli K-12 (taxid:83333)]

 Score = 145 (56.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 32/97 (32%), Positives = 52/97 (53%)

Query:   121 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 180
             +DE+ L  GV + +  GGHG HNGLK +++ L     F RL IGIG+P  K  +  ++L 
Sbjct:    93 HDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLG 152

Query:   181 KFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFN 217
             K    E++ ID A+++          +G  +  +R +
Sbjct:   153 KPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 189

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA;IMP

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

TIGR_CMR|SO_1184 SO_1184 "peptidyl-tRNA hydrolase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 155 (59.6 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 33/84 (39%), Positives = 50/84 (59%)

Query:   121 YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQ 180
             +DE+ +  GV + +  GGHG HNGLK ++  L   + F RL IGIG+P  K  +  Y+L 
Sbjct:    94 HDELDMPPGVAKFKLGGGHGGHNGLKDIIAKLANDKNFYRLRIGIGHPGDKNKVSGYVLG 153

Query:   181 KFSPIEREQIDAALEQGVEAVRTL 204
             K    E+E I+AA+++ V +   L
Sbjct:   154 KAPAKEQELINAAVDEAVRSTEIL 177

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|APH_1301 APH_1301 "peptidyl-tRNA hydrolase" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 160 (61.4 bits), Expect = 3.9e-19, Sum P(2) = 3.9e-19
 Identities = 34/70 (48%), Positives = 45/70 (64%)

Query:    51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
             L+VGLGNPG +Y  TRHNVGF +ID +A+         +  AL+ IG+IG   ++L KP 
Sbjct:     3 LLVGLGNPGKRYAETRHNVGFMIIDAVARGFFFPEFCSKHDALVSIGNIGTHRVMLMKPL 62

Query:   111 AYMNFSGESI 120
              YMN SG S+
Sbjct:    63 LYMNRSGTSV 72

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|ECH_0141 ECH_0141 "peptidyl-tRNA hydrolase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 144 (55.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 33/77 (42%), Positives = 43/77 (55%)

Query:    50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP 109
             +L+ GLGNPG KY  +RHN GF ++D IA          +  ALI IG+I    ++L KP
Sbjct:     3 YLLAGLGNPGKKYELSRHNAGFMIVDAIASEFYFPSFRERHNALISIGNIKSHRVILVKP 62

Query:   110 QAYMNFSGESIYDEMSL 126
               +MN SG  I    SL
Sbjct:    63 WTFMNNSGAPIMSIASL 79

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M5P4	CRS2_MAIZE	No assigned EC number	0.6099	0.9295	0.8242	N/A	no
Q9FKN4	CRS2A_ARATH	No assigned EC number	0.6463	1.0	0.9227	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.6558	0.8678	0.7606	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.914
3rd Layer	3.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0038001802	hypothetical protein (244 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.29.190.1	ribose-phosphate diphosphokinase (EC-2.7.6.1) (340 aa)	•						•		0.450
	estExt_Genewise1_v1.C_LG_II0778	hypothetical protein (286 aa)			•	•			•		0.425
	gw1.XVII.983.1	hypothetical protein (611 aa)			•						0.423

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	227
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	1e-106
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	5e-69
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	4e-66
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	7e-62
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	3e-56
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	5e-44

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  302 bits (776), Expect = e-106
 Identities = 134/191 (70%), Positives = 152/191 (79%), Gaps = 17/191 (8%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLA 107
           TPWLI GLGNPG KY GTRHNVGFEM+D IA+A+ I MNTIQ K+L+GIGSIG+VP+LLA
Sbjct: 1   TPWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLA 60

Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KPQ YMN+SGES                 IYD+MSL NGVLRLQPKGGHG HNGL+SV+ 
Sbjct: 61  KPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIE 120

Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
           HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  EREQID ALEQGV+AVRTLVL GF+
Sbjct: 121 HLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFN 180

Query: 211 QNISRFNMGQK 221
            +  RFN+ QK
Sbjct: 181 GSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  208 bits (533), Expect = 5e-69
 Identities = 79/172 (45%), Positives = 107/172 (62%), Gaps = 18/172 (10%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQ 110
           LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K L+G G IG   +LL KPQ
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQ 60

Query: 111 AYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLD 153
            YMN SGE+                 I+D++ L  G +RL+  GG G HNGLKS++ HL 
Sbjct: 61  TYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL- 119

Query: 154 GCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLV 205
           G  +FPRL IGIG PP KMD+  Y+L KFS  ERE ++ A+E+  +A+  ++
Sbjct: 120 GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  201 bits (515), Expect = 4e-66
 Identities = 83/184 (45%), Positives = 112/184 (60%), Gaps = 19/184 (10%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQS-KALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY  TRHNVGF +ID +A+   +++   +  K LI  G I    ++L KP
Sbjct: 1   LIVGLGNPGPKYENTRHNVGFMVIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKP 60

Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
           Q YMN SGE+                 ++D++ L  G LRL+  GG G HNGLKS++ HL
Sbjct: 61  QTYMNLSGEAVRAIARFYKIPPEDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL 120

Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
            G  +F RL IGIG PP K D+  Y+L KFSP E E +D A+E+  +A+  L+  GFD+ 
Sbjct: 121 -GTNDFKRLRIGIGRPPDKNDVADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDKA 179

Query: 213 ISRF 216
           ++RF
Sbjct: 180 MNRF 183

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  191 bits (488), Expect = 7e-62
 Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 20/187 (10%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQ-AQRIAMNTIQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN+GF ++D +A+          + K LI  G I    ++L 
Sbjct: 2   MKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILL 61

Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KPQ YMN SG++                 I+D++ L  G +RL+  GG G HNGLKS++ 
Sbjct: 62  KPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIA 121

Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
           HL G ++F RL IGIG  P K  +  Y+L KFS  E+E +D A+++  +A+  L+  GF+
Sbjct: 122 HL-GTQDFWRLRIGIGR-PDKKKVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFE 179

Query: 211 QNISRFN 217
           + +++FN
Sbjct: 180 KAMNKFN 186

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  176 bits (450), Expect = 3e-56
 Identities = 73/189 (38%), Positives = 107/189 (56%), Gaps = 21/189 (11%)

Query: 48  TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK--ALIGIGSIGEVPIL 105
              LIVGLGNPG KY  TRHNVGF ++D +A+   ++    + K   L+  G+I    ++
Sbjct: 1   MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLS-FKEEKKFNGLVAKGTIEGEKVI 59

Query: 106 LAKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSV 148
           L KP  YMN SG++                 ++DE+ L  G +RL+  GG G HNGLKS+
Sbjct: 60  LLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSI 119

Query: 149 MNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNG 208
           + HL G   F RL IGIG P    D+  Y+L KFS  ERE +D A+++  +A+  L+   
Sbjct: 120 IAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGD 178

Query: 209 FDQNISRFN 217
           F++ +++ N
Sbjct: 179 FEKAMNKLN 187

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  145 bits (368), Expect = 5e-44
 Identities = 71/186 (38%), Positives = 104/186 (55%), Gaps = 20/186 (10%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG KY GTRHN GF ++D +A    +++ T +        G +    ++L KP
Sbjct: 3   LIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKP 62

Query: 110 QAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
             YMN SGE+                 ++DE+ L  G +RL+  GG G HNGLKS+++HL
Sbjct: 63  LTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL 122

Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAV-RTLVLNGFDQ 211
            G   F RL IGIG+P G   +  ++L KF+  E   ++ AL++ VEA+  +     F +
Sbjct: 123 -GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEGAFLK 181

Query: 212 NISRFN 217
            ++RFN
Sbjct: 182 AMNRFN 187

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	227
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.6e-70  Score=466.59  Aligned_cols=171  Identities=42%  Similarity=0.701  Sum_probs=164.8

Q ss_pred             cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCc-cccccceEEEEEEECCeeEEEEecCccccccccc-------
Q 027180           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------  119 (227)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~-~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------  119 (227)
                      +++|||||||||++|+.||||||||++|.||++++.++ +.++|.++++++.+.+++|+|+||+||||+||++       
T Consensus         1 ~~kLIVGLGNPG~~Y~~TRHNvGf~~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~f   80 (190)
T COG0193           1 MMKLIVGLGNPGKKYAKTRHNVGFMVVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASF   80 (190)
T ss_pred             CcEEEEECCCCchhhcccchhHHHHHHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHH
Confidence            46899999999999999999999999999999999998 5578899999999999999999999999999999       


Q ss_pred             ----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHH
Q 027180          120 ----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  189 (227)
Q Consensus       120 ----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~  189 (227)
                                ||||||||+|++|||.+||+|||||||||+++|| |++|+|||||||||..+++|++|||++|+++|++.
T Consensus        81 y~i~~~~ilVvhDdLdl~~G~vrlk~~Gg~gGHNGlKSi~~~lG-t~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~  159 (190)
T COG0193          81 YKIKPEDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHLG-TNNFYRLRIGIGRPGNGEDVADYVLGKFSKEEREL  159 (190)
T ss_pred             hCCCHHHEEEEeeccCCCCceEEEEcCCCCCCcccHHHHHHHhC-CCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHH
Confidence                      9999999999999999999999999999999995 89999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          190 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       190 l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      |++++++|+++++.+++.+++++||+||+.
T Consensus       160 l~~~~~~a~~~~~~~~~~~~~~~mn~~~~~  189 (190)
T COG0193         160 LDKAIDKAADALELLLEGDFEKAMNKLNAL  189 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence            999999999999999999999999999975

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=2.7e-69  Score=464.07  Aligned_cols=173  Identities=77%  Similarity=1.255  Sum_probs=165.0

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc---------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES---------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s---------  119 (227)
                      |+|||||||||++|++|||||||+++|.||++++.++++.++++++++..+++++++|+||+||||+||++         
T Consensus         2 ~~LIvGLGNPG~~Y~~TRHNiGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yk   81 (191)
T cd02406           2 PWLIAGLGNPGNKYKGTRHNVGFEMVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYK   81 (191)
T ss_pred             cEEEEEcCCCchhhCcCchhHHHHHHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhC
Confidence            68999999999999999999999999999999998876677889999999999999999999999999999         


Q ss_pred             --------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHHH
Q 027180          120 --------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQID  191 (227)
Q Consensus       120 --------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l~  191 (227)
                              ||||||||+|++|+|.+||++||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.|+
T Consensus        82 i~~~~ilVihDdldl~~G~irlk~gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~  161 (191)
T cd02406          82 VPLRHILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQID  161 (191)
T ss_pred             CCHHHEEEEEECCCCCCCeEEEcCCCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHH
Confidence                    999999999999999999999999999999999557899999999999987678999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCHHHHHHhhhccCC
Q 027180          192 AALEQGVEAVRTLVLNGFDQNISRFNMGQK  221 (227)
Q Consensus       192 ~~i~~a~eal~~~i~~g~~~amn~~n~~~~  221 (227)
                      ++++.|+++++.|+.++++++||+||+.++
T Consensus       162 ~~~~~a~~~~~~~~~~~~~~~~n~~n~~~~  191 (191)
T cd02406         162 TALEQGVDAVRTLVLKGFNGSAERFNLVQK  191 (191)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence            999999999999999999999999997654

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=1.9e-67  Score=451.23  Aligned_cols=169  Identities=43%  Similarity=0.699  Sum_probs=160.9

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      |+|||||||||++|++|||||||+++|.||++++.++.+ .++.+++++..+++++++|+||+||||+||++        
T Consensus         1 ~~LIvGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~   80 (188)
T TIGR00447         1 IKLIVGLGNPGKKYAGTRHNAGFWVLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFY   80 (188)
T ss_pred             CEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHh
Confidence            589999999999999999999999999999999988763 46778899989999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        81 ~i~~~~ilVihDdldl~~G~irlk~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l  159 (188)
T TIGR00447        81 RIKPAELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLL  159 (188)
T ss_pred             CCChHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHH
Confidence                     999999999999999999999999999999999 5899999999999998777899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhC-HHHHHHhhhc
Q 027180          191 DAALEQGVEAVRTLVLNG-FDQNISRFNM  218 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g-~~~amn~~n~  218 (227)
                      +++++.++++++.|++++ ++++||+||+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~~~n~~n~  188 (188)
T TIGR00447       160 EKALDKAVEALEMSFSEGAFLKAMNRFNS  188 (188)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhhC
Confidence            999999999999999999 9999999995

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=3.4e-66  Score=443.76  Aligned_cols=170  Identities=43%  Similarity=0.737  Sum_probs=160.6

Q ss_pred             cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEecCccccccccc-------
Q 027180           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------  119 (227)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~-~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------  119 (227)
                      +|||||||||||++|++|||||||+++|.||++++..+. ..++.+++++..+++++++|+||+||||+||++       
T Consensus         1 ~~~LivGLGNPG~~Y~~TRHNvGf~~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~   80 (189)
T PRK05426          1 MMKLIVGLGNPGPEYANTRHNIGFMVVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANF   80 (189)
T ss_pred             CcEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHH
Confidence            369999999999999999999999999999999887664 456789999999998999999999999999999       


Q ss_pred             ----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHH
Q 027180          120 ----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  189 (227)
Q Consensus       120 ----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~  189 (227)
                                ||||||||+|++|+|.+||++||||||||+++|| |++|+|||||||||+ ..++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDdldl~~G~~r~k~gGs~~GHNGlkSI~~~lg-t~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~  158 (189)
T PRK05426         81 YKIPPEDILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHLG-TQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQEL  158 (189)
T ss_pred             hCCCHHHEEEEEecCCCCCceEEEecCCCCCCcCCHHHHHHHhC-CCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHH
Confidence                      9999999999999999999999999999999994 789999999999997 5679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          190 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       190 l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      |+++++.|+++++.|++++++++||+||++
T Consensus       159 l~~~~~~a~~~v~~~~~~~~~~~~~~~n~~  188 (189)
T PRK05426        159 LDKAIDKAADAIELLLEGGFEKAMNKFNSK  188 (189)
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=2.5e-65  Score=435.56  Aligned_cols=166  Identities=49%  Similarity=0.855  Sum_probs=148.3

Q ss_pred             EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccc-cceEEEEEEECCeeEEEEecCccccccccc----------
Q 027180           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQ-SKALIGIGSIGEVPILLAKPQAYMNFSGES----------  119 (227)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k-~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s----------  119 (227)
                      |||||||||++|++|||||||+++|.||++++.+|...+ +.+.++++.+.+++++|+||+||||+||.+          
T Consensus         1 LivGLGNPG~~Y~~TRHNvG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i   80 (184)
T PF01195_consen    1 LIVGLGNPGPKYENTRHNVGFMVLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKI   80 (184)
T ss_dssp             EEEE---SSTTTTTSGGGHHHHHHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT-
T ss_pred             CEEEcCCCChhhcCCCcCchHHHHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCC
Confidence            799999999999999999999999999999998886654 789999999999999999999999999999          


Q ss_pred             -------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHHHH
Q 027180          120 -------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDA  192 (227)
Q Consensus       120 -------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l~~  192 (227)
                             ||||||+|+|++|+|.+||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|++
T Consensus        81 ~~~~ilVihDdldl~~G~irlk~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~  159 (184)
T PF01195_consen   81 PPENILVIHDDLDLPLGKIRLKKGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDK  159 (184)
T ss_dssp             -GGGEEEEEEETTSSTTEEEEEESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHH
T ss_pred             CcceEEEEEeccCCCCCeEEEccCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHH
Confidence                   999999999999999999999999999999999 589999999999999877899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCHHHHHHhhh
Q 027180          193 ALEQGVEAVRTLVLNGFDQNISRFN  217 (227)
Q Consensus       193 ~i~~a~eal~~~i~~g~~~amn~~n  217 (227)
                      +++.|+++++.|+++++++|||+||
T Consensus       160 ~~~~a~~~l~~~i~~~~~~~mn~~n  184 (184)
T PF01195_consen  160 VIPQAAEALEQIIEGGFEKAMNKFN  184 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHhC
Confidence            9999999999999999999999998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=2.9e-64  Score=426.06  Aligned_cols=154  Identities=51%  Similarity=0.905  Sum_probs=147.5

Q ss_pred             EEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc-----------
Q 027180           51 LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-----------  119 (227)
Q Consensus        51 LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-----------  119 (227)
                      |||||||||++|++|||||||+++|.||++++.++.+.++.+++++..+.+++++|+||+||||+||++           
T Consensus         1 LIvGLGNPG~~Y~~TRHNvGf~~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~   80 (171)
T cd00462           1 LIVGLGNPGPKYENTRHNVGFMVLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIP   80 (171)
T ss_pred             CEEEECCCCcccCcCchHHHHHHHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCC
Confidence            699999999999999999999999999999999887777789999999999999999999999999999           


Q ss_pred             ------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHHHHH
Q 027180          120 ------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAA  193 (227)
Q Consensus       120 ------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l~~~  193 (227)
                            ||||||||+|++|+|++||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.|+++
T Consensus        81 ~~~ilVihDdldl~~G~vrlk~~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~  159 (171)
T cd00462          81 PEDILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEA  159 (171)
T ss_pred             hhHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHH
Confidence                  999999999999999999999999999999999 5899999999999998778999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 027180          194 LEQGVEAVRTLV  205 (227)
Q Consensus       194 i~~a~eal~~~i  205 (227)
                      ++.|+++++.|+
T Consensus       160 ~~~~~~~~~~~~  171 (171)
T cd00462         160 IEKAADALEDIL  171 (171)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.8e-50  Score=344.02  Aligned_cols=166  Identities=62%  Similarity=1.070  Sum_probs=148.3

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc---------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES---------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s---------  119 (227)
                      +|+|+||||||++|..|||||||.++|.||++++++..+.+.++..+...+++..+++++|++|||.||++         
T Consensus        39 ~wli~GLGNPg~~y~gTRHnvG~~Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~  118 (224)
T KOG2255|consen   39 PWLIVGLGNPGSKYVGTRHNVGFEMLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYK  118 (224)
T ss_pred             ceEEEecCCCcccccccchhhHHHHHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhc
Confidence            69999999999999999999999999999999998766555567777788999999999999999999999         


Q ss_pred             --------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHH-HH
Q 027180          120 --------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE-QI  190 (227)
Q Consensus       120 --------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~-~l  190 (227)
                              |||||++|+|++|+|++||++||||+||++++|++...|+||+||||||++++|+.+|||++|++.|++ .|
T Consensus       119 i~~~~ivvIhDEl~l~~Gkl~Lrp~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~L  198 (224)
T KOG2255|consen  119 IPLRHIVVIHDELELPLGKLRLRPGGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKELL  198 (224)
T ss_pred             chheeEEEEeccccCcCceEEeccCCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHHH
Confidence                    999999999999999999999999999999999887799999999999999999999999999999998 44


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRFNM  218 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~n~  218 (227)
                      +..    .+.++.++.++++.-.++||.
T Consensus       199 et~----l~~~~~lil~~l~~~is~~~l  222 (224)
T KOG2255|consen  199 ETL----LEHVKTLILQGLQQSISRFNL  222 (224)
T ss_pred             HHH----HhhhHHHHHHHHHHhcccCcC
Confidence            444    445555666667777777774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	227
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		8e-74
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		4e-71
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		5e-69
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		4e-22
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		5e-22
2lgj_A	191	Solution Structure Of Mspth Length = 191		1e-21
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-20
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		1e-15
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		1e-13
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		2e-13
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		4e-13
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		4e-13
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		4e-13
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		4e-12
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		4e-12

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  273 bits (697), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 134/200 (67%), Positives = 155/200 (77%), Gaps = 17/200 (8%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT QSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
           L+ KPQ+YMN+SGE+I                 YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 208 GFDQNISRFNMGQKYKYHAV 227
           GF  +  RFN+ QKYK+H V
Sbjct: 193 GFSGSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/193 (67%), Positives = 150/193 (77%), Gaps = 17/193 (8%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
           L+ KPQ+YMN+SGE+I                 YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192
Query: 208 GFDQNISRFNMGQ 220
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  256 bits (655), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 127/194 (65%), Positives = 148/194 (76%), Gaps = 17/194 (8%)
Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           +EYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNT Q K+L+G GSIGEVP+
Sbjct: 1   MEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPV 60
Query: 105 LLAKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKS 147
           L+ KPQ+YMN+SGE+I                 YD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 61  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 120
Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 121 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 180
Query: 208 GFDQNISRFNMGQK 221
           GF  +  RFN+ QK
Sbjct: 181 GFSGSTERFNLVQK 194

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KP+ YMN SG  I                 +D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/180 (37%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KP+ YMN SG  I                 +D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 19/180 (10%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTSVVLA 63
Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KP+ YMN SG                   I+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 97/180 (53%), Gaps = 19/180 (10%)
Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A     A     +S A +  G +    ++LA
Sbjct: 4   PLLVVGLGNPGPTYAKTRHNLGFMVADVLAGRIGSAFKVHKKSGAEVVTGRLAGTTVVLA 63
Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KP+  MN SG                   I+DE+ +  G +RL+  GG G HNGL+SV +
Sbjct: 64  KPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGLRSVAS 123
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L G + F R+ IG+G PPG+ D  A++L+ F+  ER ++   +EQ  +A   L+  G +
Sbjct: 124 AL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLIAQGLE 182

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/185 (34%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAM-NTIQSKALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN GF  ++ +A    I + N  +   + G G+I    + L  P
Sbjct: 6   LIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLP 65
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
             YMN SG+S+                 +DE+ +  GV+RL+  GGHG HNGL+ ++ H+
Sbjct: 66  MTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI 125
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
                F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q 
Sbjct: 126 --GPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA 183
Query: 213 ISRFN 217
           +++ N
Sbjct: 184 MNQIN 188

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/167 (36%), Positives = 91/167 (54%), Gaps = 21/167 (12%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQA--QRIAMNTIQSKALIGIGSIGEVPILLAK 108
           +I+GLGN G +Y  TRHNVG   I  IAQ   Q  + N   +  L  + SI    ++L  
Sbjct: 25  MIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKV-SIDYNNVVLVF 83
Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           P  YMN SG +                 ++DE+ + +G +RL+  GGHG HNGL+S+  H
Sbjct: 84  PTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQH 143
Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGV 198
           L G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+
Sbjct: 144 L-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGI 189

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 97/189 (51%), Gaps = 36/189 (19%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK----ALIGIGSIGEVPILL 106
           LIVGLGNPG +Y  TRHN GF ++D +A   R A  T++ +           +    + L
Sbjct: 25  LIVGLGNPGAEYTATRHNAGFWLVDQLA---REAGATLRDERRFHGFYAKARLYGEEVHL 81
Query: 107 AKPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVM 149
            +PQ YMN SG+S+                 +DE+ L  G ++L+  GG G HNGLK + 
Sbjct: 82  LEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDIS 141
Query: 150 NHLDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVE 199
            HL   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ + 
Sbjct: 142 AHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERAL- 199
Query: 200 AVRTLVLNG 208
           AV   V+ G
Sbjct: 200 AVMPAVVKG 208

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 61
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
            P  +MN SG+++                 +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 62  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 121
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 122 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 181
Query: 211 QNISRFN 217
           +  +R +
Sbjct: 182 KATNRLH 188

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 8   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 65
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
            P  +MN SG+++                 +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 66  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 125
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 126 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 185
Query: 211 QNISRFN 217
           +  +R +
Sbjct: 186 KATNRLH 192

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 90/187 (48%), Gaps = 22/187 (11%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGS---IGEVPILLA 107
           LIVGL NPG +Y  TRHN G   +D +A+  R  +   +     G  S   +G   + L 
Sbjct: 25  LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLR--EEAKFFGYTSRVTLGGEDVRLL 82
Query: 108 KPQAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
            P  +MN SG+++                 +DE+ L  GV + +  GGHG HNGLK +++
Sbjct: 83  VPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIIS 142
Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  
Sbjct: 143 KLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLT 202
Query: 211 QNISRFN 217
           +  +R +
Sbjct: 203 KATNRLH 209

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 12  LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 71
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
             YMN SG+S+                 +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 72  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 131
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 195
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 132 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 174

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 18/163 (11%)
Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSK-ALIGIGSIGEVPILLAKP 109
           LIVGLGNPG +Y  TRHN G   ++ +A AQ +++   +    L+G  S     + L  P
Sbjct: 6   LIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIP 65
Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
             YMN SG+S+                 +DE+ +  GV +L+  GGHG HNGL+ ++  L
Sbjct: 66  TTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL 125
Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALE 195
                F RL +GIG+P     +  Y+L +    E+E +D +++
Sbjct: 126 GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSID 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	227
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	2e-88
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	8e-77
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	1e-73
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	6e-71
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	6e-66
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	9e-65
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	3e-64

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  258 bits (662), Expect = 2e-88
 Identities = 130/193 (67%), Positives = 150/193 (77%), Gaps = 17/193 (8%)

Query: 45  VEYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPI 104
           VEYTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+
Sbjct: 13  VEYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPV 72

Query: 105 LLAKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKS 147
           L+ KPQ+YMN+SGE+                 IYD+ SL NGVLRLQ KGGHG HNGL++
Sbjct: 73  LVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQN 132

Query: 148 VMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLN 207
           V+ HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL 
Sbjct: 133 VIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLK 192

Query: 208 GFDQNISRFNMGQ 220
           GF  +  RFN+ Q
Sbjct: 193 GFSGSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  228 bits (584), Expect = 8e-77
 Identities = 69/187 (36%), Positives = 100/187 (53%), Gaps = 19/187 (10%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
           P L+VGLGNPG  Y  TRHN+GF + D +A           +S A +  G      ++LA
Sbjct: 4   PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLA 63

Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
           KP+ YMN SG                   I+D++ L  G +RL+  GG G HNGL+SV+ 
Sbjct: 64  KPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVA 123

Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L G ++F R+ IGIG PPG+ D  A++L+ F+P ER ++    EQ  +A   L+  G +
Sbjct: 124 AL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGME 182

Query: 211 QNISRFN 217
              +R +
Sbjct: 183 PAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  220 bits (564), Expect = 1e-73
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 18/187 (9%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             LIVGLGNPG +Y  TRHN G   ++ +A AQ +++    +   L+G  S     + L 
Sbjct: 4   VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLL 63

Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
            P  YMN SG+S                  +DE+ +  GV +L+  GGHG HNGL+ ++ 
Sbjct: 64  IPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIA 123

Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
            L     F RL +GIG+P     +  Y+L +    E+E +D +++  +  +  ++   + 
Sbjct: 124 QLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWT 183

Query: 211 QNISRFN 217
           + + + +
Sbjct: 184 RAMQKLH 190

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  213 bits (546), Expect = 6e-71
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 18/186 (9%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  
Sbjct: 3   KLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLV 62

Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           P  +MN SG++                  +DE+ L  GV + +  GGHG HNGLK +++ 
Sbjct: 63  PTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISK 122

Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
           L     F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  +
Sbjct: 123 LGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTK 182

Query: 212 NISRFN 217
             +R +
Sbjct: 183 ATNRLH 188

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  201 bits (514), Expect = 6e-66
 Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 19/186 (10%)

Query: 49  PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLA 107
             +I+GLGN G +Y  TRHNVG   I  IAQ    + ++  +    +   SI    ++L 
Sbjct: 23  IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLV 82

Query: 108 KPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMN 150
            P  YMN SG +                 ++DE+ + +G +RL+  GGHG HNGL+S+  
Sbjct: 83  FPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQ 142

Query: 151 HLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFD 210
           HL G  ++ RL IGIG+P  K  +  Y+L   S  +++ ID+A++ G+  +  ++    +
Sbjct: 143 HL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLE 201

Query: 211 QNISRF 216
             + + 
Sbjct: 202 PVMQKL 207

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  198 bits (505), Expect = 9e-65
 Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 20/186 (10%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF  ++ +A    I +    +   + G G+I    + L  
Sbjct: 5   SLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64

Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           P  YMN SG+S                  +DE+ +  GV+RL+  GGHG HNGL+ ++ H
Sbjct: 65  PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124

Query: 152 LDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQ 211
           +     F RL IGIG+P  K  +  ++L K    E+  +D A++  +  V+ LV     Q
Sbjct: 125 IG--PNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182

Query: 212 NISRFN 217
            +++ N
Sbjct: 183 AMNQIN 188

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  197 bits (504), Expect = 3e-64
 Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 29/196 (14%)

Query: 50  WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAK 108
            LIVGLGNPG +Y  TRHN GF ++D +A+     +    +         +    + L +
Sbjct: 24  KLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83

Query: 109 PQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNH 151
           PQ YMN SG+S                  +DE+ L  G ++L+  GG G HNGLK +  H
Sbjct: 84  PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143

Query: 152 LDGCREFPRLCIGIGNPP----------GKMDMKAYLLQKFSPIEREQIDAALEQGVEAV 201
           L   +++ RL IGIG+P            K D+  ++L+     E++ IDAA+E+ +  +
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202

Query: 202 RTLVLNGFDQNISRFN 217
             +V    ++ + + +
Sbjct: 203 PAVVKGETERAMMQLH 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	227
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=2.2e-70  Score=470.11  Aligned_cols=171  Identities=33%  Similarity=0.540  Sum_probs=162.7

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~-~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      |+|||||||||++|++|||||||+++|+||++++.++. +.+++++++++.+++++|+|+||+||||+||++        
T Consensus         2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y   81 (193)
T 2pth_A            2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence            68999999999999999999999999999999999987 567889999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|+|.+||+|||||||||+++||+|++|+|||||||||..+.+|++|||++|+++|++.|
T Consensus        82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 2pth_A           82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence                     99999999999999999999999999999999943789999999999996555799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      +++++.|+++++.|++.+++++||+||++
T Consensus       162 ~~~i~~a~~a~~~~~~~~~~~amn~~n~~  190 (193)
T 2pth_A          162 DEAIDEAARCTEMWFTDGLTKATNRLHAF  190 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence            99999999999999999999999999975

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=4.5e-70  Score=472.00  Aligned_cols=174  Identities=73%  Similarity=1.189  Sum_probs=160.4

Q ss_pred             cCcCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc------
Q 027180           46 EYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES------  119 (227)
Q Consensus        46 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s------  119 (227)
                      ++.++|||||||||++|++|||||||+++|+||++++.++++.+++++++++.+++++|+|+||+||||+||++      
T Consensus        14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~   93 (205)
T 1ryb_A           14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA   93 (205)
T ss_dssp             -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence            44579999999999999999999999999999999999988778899999999999999999999999999999      


Q ss_pred             -----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhc-cCCCCccEEEEeecCCCCCCccccccccCCCHHHH
Q 027180          120 -----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL-DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIER  187 (227)
Q Consensus       120 -----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~L-ggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~  187 (227)
                                 ||||||||+|++|||.+||+|||||||||+++| | |++|+|||||||||+.+.+|++|||++|+++|+
T Consensus        94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~g-t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~  172 (205)
T 1ryb_A           94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDG-RREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER  172 (205)
T ss_dssp             HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTT-CCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred             HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcC-CCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence                       999999999999999999999999999999999 6 789999999999997666799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhccC
Q 027180          188 EQIDAALEQGVEAVRTLVLNGFDQNISRFNMGQ  220 (227)
Q Consensus       188 ~~l~~~i~~a~eal~~~i~~g~~~amn~~n~~~  220 (227)
                      +.|+++++.|++|++.|+++++++|||+||.++
T Consensus       173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~~  205 (205)
T 1ryb_A          173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ  205 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999753

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=3.5e-70  Score=468.22  Aligned_cols=169  Identities=41%  Similarity=0.723  Sum_probs=151.3

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      |+|||||||||++|++|||||||+++|+||++++.++.+ .+++++++++.+++++|+|+||+||||+||++        
T Consensus         4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y   83 (191)
T 2z2i_A            4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY   83 (191)
T ss_dssp             CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred             cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence            689999999999999999999999999999999998865 46889999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|+|.+||+|||||||||+++| +|++|+|||||||||+.+.+|++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  162 (191)
T 2z2i_A           84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV  162 (191)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred             CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence                     999999999999999999999999999999999 5899999999999996556799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhc
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRFNM  218 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~n~  218 (227)
                      +++++.|+++++.|+++++++|||+||+
T Consensus       163 ~~~i~~a~~a~~~~~~~~~~~amn~~n~  190 (191)
T 2z2i_A          163 PTICEQAADATELLIEQGMEPAQNRVHA  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence            9999999999999999999999999995

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.3e-69  Score=465.78  Aligned_cols=170  Identities=32%  Similarity=0.564  Sum_probs=162.8

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      ..|||||||||++|++|||||||+++|+||++++.++.. .++.++++++.+++++++|+||+||||+||++        
T Consensus        10 ~~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y   89 (199)
T 4fyj_A           10 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF   89 (199)
T ss_dssp             CCEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHT
T ss_pred             eeEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHh
Confidence            469999999999999999999999999999999998764 46889999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCC-CccEEEEeecCCCCCCccccccccCCCHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  189 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~-~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~  189 (227)
                               ||||||||+|++|||.+||++||||||||+++|| |+ +|+|||||||||+.+.+|++|||++|+++|++.
T Consensus        90 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~Lg-t~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~  168 (199)
T 4fyj_A           90 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLG-NQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL  168 (199)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHC-SSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHH
T ss_pred             CCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHhC-CccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHH
Confidence                     9999999999999999999999999999999995 77 999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          190 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       190 l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      |++++++|+++++.|+++++++|||+||++
T Consensus       169 l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  198 (199)
T 4fyj_A          169 LDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  198 (199)
T ss_dssp             HHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            999999999999999999999999999975

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=3.3e-69  Score=462.80  Aligned_cols=170  Identities=37%  Similarity=0.612  Sum_probs=163.0

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      ++|||||||||++|++|||||||+++|+||++++.++.. .++.++++++.+++++++|+||+||||+||++        
T Consensus         4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~   83 (193)
T 4hoy_A            4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY   83 (193)
T ss_dssp             CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred             ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence            579999999999999999999999999999999998755 57789999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|+|.+||+|||||||||+++|| | ||+|||||||||+.+.+|++|||++|+++|++.|
T Consensus        84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~lg-t-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l  161 (193)
T 4hoy_A           84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIG-P-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHHC-S-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred             CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHhc-c-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence                     8999999999999999999999999999999995 5 7999999999999888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhccC
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRFNMGQ  220 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~n~~~  220 (227)
                      +++++.|+++++.|+++++++|||+||+++
T Consensus       162 ~~~i~~a~~~i~~~~~~~~~~amn~~n~~k  191 (193)
T 4hoy_A          162 DGAIDHALSKVKLLVQGQVPQAMNQINAYK  191 (193)
T ss_dssp             HHHHHHHHHTHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCCC
Confidence            999999999999999999999999999864

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=3.1e-69  Score=471.50  Aligned_cols=172  Identities=34%  Similarity=0.570  Sum_probs=158.6

Q ss_pred             CcCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEecCccccccccc------
Q 027180           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGES------  119 (227)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~-k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s------  119 (227)
                      ++++|||||||||++|++|||||||++||+||++++.++.+. +|.++++++.+++++|+|+||+||||+||++      
T Consensus        21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~  100 (222)
T 3v2i_A           21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH  100 (222)
T ss_dssp             -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred             ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence            457999999999999999999999999999999999987764 6889999999999999999999999999998      


Q ss_pred             -----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCC----------CCCCcccccc
Q 027180          120 -----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL  178 (227)
Q Consensus       120 -----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP----------~~~~~v~~yV  178 (227)
                                 ||||||||+|++|||.+||++||||||||+++| +|++|+|||||||||          +.+.+|++||
T Consensus       101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV  179 (222)
T 3v2i_A          101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV  179 (222)
T ss_dssp             HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred             HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence                       899999999999999999999999999999999 589999999999999          5567899999


Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          179 LQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       179 Ls~Fs~eE~~~l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      |++|+++|++.|++++++|+++++.|++.++++|||+||+.
T Consensus       180 L~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~  220 (222)
T 3v2i_A          180 LKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN  220 (222)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999975

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=5.1e-69  Score=465.95  Aligned_cols=167  Identities=34%  Similarity=0.569  Sum_probs=161.0

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~-k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      |+|||||||||++|++|||||||+++|+||++++.+|.+. ++.++++++.+++++++|+||+||||+||++        
T Consensus        23 ~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y  102 (207)
T 3nea_A           23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY  102 (207)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHh
Confidence            7999999999999999999999999999999999998765 6889999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|||.+||++||||||||+++|| |++|+|||||||||+.+.+|++|||++|+++|++.|
T Consensus       103 ki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~Lg-t~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l  181 (207)
T 3nea_A          103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHLG-TNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI  181 (207)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHHT-CCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHhC-CCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence                     9999999999999999999999999999999994 899999999999998888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhh
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRF  216 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~  216 (227)
                      ++++++|+++++.|++.++++|||++
T Consensus       182 ~~~i~~a~~a~~~~~~~~~~~amn~~  207 (207)
T 3nea_A          182 DSAIDNGICFLDDIINYKLEPVMQKL  207 (207)
T ss_dssp             HHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence            99999999999999999999999975

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.1e-70  Score=472.30  Aligned_cols=171  Identities=33%  Similarity=0.571  Sum_probs=161.7

Q ss_pred             cCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEecCccccccccc-------
Q 027180           48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------  119 (227)
Q Consensus        48 ~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~-~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------  119 (227)
                      ||+|||||||||++|++|||||||+++|+||++++.++. +.+++++++++.+++++|+|+||+||||+||++       
T Consensus         3 mm~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f   82 (194)
T 4fno_A            3 AVQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF   82 (194)
Confidence            468999999999999999999999999999999999876 456889999988999999999999999999999       


Q ss_pred             ----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCC-CCccEEEEeecCCCCCCccccccccCCCHHHHH
Q 027180          120 ----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE  188 (227)
Q Consensus       120 ----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt-~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~  188 (227)
                                ||||||||+|++|+|.+||+|||||||||+++| +| ++|+|||||||||..+.+|++|||++|+++|++
T Consensus        83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~  161 (194)
T 4fno_A           83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE  161 (194)
Confidence                      999999999999999999999999999999999 47 799999999999965567999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          189 QIDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       189 ~l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      .|+++++.|+++++.|+++++++|||+||..
T Consensus       162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~  192 (194)
T 4fno_A          162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ  192 (194)
Confidence            9999999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	227
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	6e-56
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	2e-45

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  174 bits (443), Expect = 6e-56
 Identities = 128/191 (67%), Positives = 148/191 (77%), Gaps = 17/191 (8%)

Query: 47  YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILL 106
           YTPWLI GLGNPG KY+GTRHNVGFEM+D IA  + I MNTIQSK+L+GIGSIGEVP+L+
Sbjct: 1   YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLV 60

Query: 107 AKPQAYMNFSGES-----------------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVM 149
            KPQ+YMN+SGE+                 IYD+ SL NGVLRLQ KGGHG HNGL++V+
Sbjct: 61  VKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVI 120

Query: 150 NHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGF 209
            HLDG REFPRL IGIG+PPGKMD +A+LLQKFS  ER QID ALEQGV+AVRTLVL GF
Sbjct: 121 EHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGF 180

Query: 210 DQNISRFNMGQ 220
             +  RFN+ Q
Sbjct: 181 SGSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (373), Expect = 2e-45
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 18/185 (9%)

Query: 51  LIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKP 109
           LIVGL NPG +Y  TRHN G   +D +A+  R  +    +        ++G   + L  P
Sbjct: 4   LIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVP 63

Query: 110 QAYMNFSGESI-----------------YDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHL 152
             +MN SG+++                 +DE+ L  GV + +  GGHG HNGLK +++ L
Sbjct: 64  TTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL 123

Query: 153 DGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQIDAALEQGVEAVRTLVLNGFDQN 212
                F RL IGIG+P  K  +  ++L K    E++ ID A+++          +G  + 
Sbjct: 124 GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKA 183

Query: 213 ISRFN 217
            +R +
Sbjct: 184 TNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	227
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.5e-68  Score=455.74  Aligned_cols=173  Identities=73%  Similarity=1.205  Sum_probs=161.3

Q ss_pred             CcCeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEecCccccccccc-------
Q 027180           47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGES-------  119 (227)
Q Consensus        47 ~~~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s-------  119 (227)
                      +|+||||||||||++|++|||||||+++|+||++++.+++..++.+.++...+++++++|+||+||||+||++       
T Consensus         1 ~~p~LIvGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~   80 (191)
T d1ryba_           1 YTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAY   80 (191)
T ss_dssp             CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCccccCCccHHHHHHHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHh
Confidence            3679999999999999999999999999999999999988778889999999999999999999999999999       


Q ss_pred             ----------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHH
Q 027180          120 ----------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ  189 (227)
Q Consensus       120 ----------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~  189 (227)
                                ||||||||+|++|+|.+||++||||||||+++|+++++|+|||||||||+.+.++++|||++|+++|++.
T Consensus        81 ~~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~  160 (191)
T d1ryba_          81 YQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQ  160 (191)
T ss_dssp             TTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHH
T ss_pred             hccCcceeEEEEcccccccCceeeccCCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHH
Confidence                      8999999999999999999999999999999997678999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCHHHHHHhhhcc
Q 027180          190 IDAALEQGVEAVRTLVLNGFDQNISRFNMG  219 (227)
Q Consensus       190 l~~~i~~a~eal~~~i~~g~~~amn~~n~~  219 (227)
                      |+++++.++++++.|++++++++||+||+.
T Consensus       161 l~~~~~~~~~~~~~~i~~~~~~~mn~~N~~  190 (191)
T d1ryba_         161 IDTALEQGVDAVRTLVLKGFSGSTERFNLV  190 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-----CCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHcCHHHHHHHhhCC
Confidence            999999999999999999999999999974

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-67  Score=447.66  Aligned_cols=173  Identities=32%  Similarity=0.536  Sum_probs=163.5

Q ss_pred             CeEEEeecCCCCCCCcCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEecCccccccccc--------
Q 027180           49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGES--------  119 (227)
Q Consensus        49 ~~LIVGLGNPG~~Y~~TRHNiGf~vlD~La~~~~~~~~~-~k~~~~~~~~~i~~~~v~L~KP~TyMN~SG~s--------  119 (227)
                      |+|||||||||++|++|||||||+++|.||++++.++.. .++.++++...+.+++++|+||+||||+||.+        
T Consensus         2 mklivGLGNPG~~Y~~TRHNiG~~~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~   81 (193)
T d2ptha_           2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF   81 (193)
T ss_dssp             CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred             EEEEEECCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHh
Confidence            689999999999999999999999999999999998764 45778999999999999999999999999999        


Q ss_pred             ---------hhcccCCCCccEEEccCCCCCCCCchHHHHHhccCCCCccEEEEeecCCCCCCccccccccCCCHHHHHHH
Q 027180          120 ---------IYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQI  190 (227)
Q Consensus       120 ---------vhDDLdL~~G~irlk~gGs~gGHNGLKSI~~~Lggt~~f~RLRIGIGrP~~~~~v~~yVLs~Fs~eE~~~l  190 (227)
                               ||||||||+|++|+|.+||++||||||||+++||.+++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus        82 ~i~~~~ilVihDDldl~~G~irlk~~Gs~gGHNGlkSI~~~LG~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l  161 (193)
T d2ptha_          82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI  161 (193)
T ss_dssp             TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred             CCCHHHeEEEecchhccCCCcccccCCCccccccHHHHHHHhhcccchheeeeeccCCcccCCccceeCCCCCHHHHHHH
Confidence                     89999999999999999999999999999999964558999999999998877899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHhhhccCC
Q 027180          191 DAALEQGVEAVRTLVLNGFDQNISRFNMGQK  221 (227)
Q Consensus       191 ~~~i~~a~eal~~~i~~g~~~amn~~n~~~~  221 (227)
                      +++++.++++++.|+++++++|||+||+.+.
T Consensus       162 ~~~i~~~~~~i~~~i~~g~~~amn~~N~~k~  192 (193)
T d2ptha_         162 DEAIDEAARCTEMWFTDGLTKATNRLHAFKA  192 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHhCcCC
Confidence            9999999999999999999999999998653