Citrus Sinensis ID: 027212

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFTIS
Secondary Structure (PSIPRED)
cccccccccccccHHcccccccccEEEcccccccccccccEEccccEEEEcccccHHHHHHHHccccEEEHHcccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccHHHHHHccccccccEEEEcccccccHHHHHHHHHHccccccccccccEEEEccccccHHHHHHHHHHHHHHHccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccccHHccccccccccccccccccccEEEEEcccHHHHHHHHcccccEEEccccccccEEEEEEcHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccEEEEHHHcEEEEEEEccEEEEEEccHHHHHHHHHHHHHcccccccEEEccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHEEccccc
Coil and Loop (DISEMBL)
mathfsstgpmrsifqlksnppkcllflpdschrraetatcrassvsvrqwssaanySRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFnsvrtgrsnpamlDKIEVEyygspvslksiaqintpdssslliqpydksslKSIEKAIVSsdlgmtpnndgevirltlpqltSERRKELSKVVAKQAEEGKVVMLLLFTIS
Flexible Loop (DISEMBL)
mathfsstgpmrsifqLKSNPPKCLLFLPDSCHRRAETATcrassvsvrqwssaanysrlvklsnKPIVVrqlahkrngvvrcatieeieaekssiekdvKARMERTIDmvrtnfnsvrtgrsnpamLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSsdlgmtpnndgeVIRLtlpqltserRKELSKVvakqaeegkvVMLLLFTIS
Low Complexity Region (SEG)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATieeieaekssiekDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFTIS
Disordered region (IsUnstruct)
*********************PKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEI********************MVRT*F***********MLDKIEVEYYGSPVSLKSIA********************************************************************GKVVMLLLFT**
Disordered Region (DISOPRED)
**************F***SNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDV*ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFTIS
Disordered Region (DISEMBL)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRR***************WSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTS**********AKQAEEGKVVMLLLFTIS
Disordered Region (DISPRO)
********GPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLF***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLVKLSNKPIVVRQLAHKRNGVVRCATxxxxxxxxxxxxxxxxxxxxxTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFTIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q9M1X0	275	Ribosome-recycling factor	yes	no	0.942	0.774	0.638	3e-71
P37706	227	Ribosome-recycling factor	N/A	no	0.734	0.731	0.687	1e-64
P82231	271	Ribosome-recycling factor	N/A	no	0.787	0.656	0.661	8e-64
A3BLC3	266	Ribosome-recycling factor	yes	no	0.738	0.627	0.641	2e-56
A2YMU2	266	Ribosome-recycling factor	N/A	no	0.738	0.627	0.641	2e-56
Q2JHW2	182	Ribosome-recycling factor	yes	no	0.526	0.653	0.596	6e-38
Q8YXK4	182	Ribosome-recycling factor	yes	no	0.535	0.664	0.570	2e-37
Q5N3B7	182	Ribosome-recycling factor	yes	no	0.535	0.664	0.578	3e-37
Q31QY0	182	Ribosome-recycling factor	yes	no	0.535	0.664	0.578	3e-37
Q8DM64	182	Ribosome-recycling factor	yes	no	0.535	0.664	0.561	5e-37

>sp|Q9M1X0|RRFC_ARATH Ribosome-recycling factor, chloroplastic OS=Arabidopsis thaliana GN=RRF PE=1 SV=2

 Score =  268 bits (685), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 11/224 (4%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
           MA  FSST P   + + ++N  K LL LPDSC R   +A     S S R  + +    +L
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56

Query: 61  -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
                V LS  P+V R L  ++  V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57  PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKV +
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVAL 218

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.
Arabidopsis thaliana (taxid: 3702)

>sp|P37706|RRFC_DAUCA Ribosome-recycling factor, chloroplastic (Fragment) OS=Daucus carota GN=RRF PE=2 SV=2

 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 147/173 (84%), Gaps = 7/173 (4%)

Query: 51  WSSAANYSRLV----KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
           W++AANY ++     K + K +V   L+ KR G ++CAT+EEIEAEKS IEK VK RME+
Sbjct: 1   WTAAANYVKIKVGTGKFARKTVV---LSQKRTGTLKCATMEEIEAEKSLIEKSVKERMEK 57

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
           TI+ V+ +FNS+RT RSNP MLDKI+VEYYG+P SLKSIAQI+TPDSSSLL+ PYDKSSL
Sbjct: 58  TIENVKASFNSIRTXRSNPDMLDKIKVEYYGTPTSLKSIAQISTPDSSSLLVNPYDKSSL 117

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           K IEKAIV+SDLG+TPNNDG+VIRL++PQLT++RRKELSK+VAKQAEEGKV +
Sbjct: 118 KDIEKAIVNSDLGITPNNDGDVIRLSIPQLTADRRKELSKIVAKQAEEGKVAL 170

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Daucus carota (taxid: 4039)

>sp|P82231|RRFC_SPIOL Ribosome-recycling factor, chloroplastic OS=Spinacia oleracea GN=RRF PE=1 SV=1

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 121/183 (66%), Positives = 150/183 (81%), Gaps = 5/183 (2%)

Query: 41  CRASSVSVRQWSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSI 96
           C  +  +V  W S+ANY R+     K S K +VV+QL + R G  RCAT+EE+EAEKS I
Sbjct: 33  CNIARTNVSVWRSSANYVRMDCGVKKFSGKAVVVKQLQN-RAGTFRCATMEEVEAEKSLI 91

Query: 97  EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSL 156
           E + K RME+TI+ +R+NFNSVRT R++P MLD+IEVEYYG+PVSLKSIAQI+TPD+SSL
Sbjct: 92  ETNTKQRMEKTIETIRSNFNSVRTNRASPTMLDRIEVEYYGTPVSLKSIAQISTPDASSL 151

Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
           LI PYDKSSLK+IEKAIV+S LG++PNNDGEVIRL+LP LTS+RRKEL+KVV+K AEEGK
Sbjct: 152 LISPYDKSSLKAIEKAIVTSQLGVSPNNDGEVIRLSLPPLTSDRRKELAKVVSKLAEEGK 211

Query: 217 VVM 219
           V +
Sbjct: 212 VAV 214

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Spinacia oleracea (taxid: 3562)

>sp|A3BLC3|RRFC_ORYSJ Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0570700 PE=2 SV=2

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/173 (64%), Positives = 143/173 (82%), Gaps = 6/173 (3%)

Query: 51  WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
            SS+ N+  L    ++  ++P+++ Q + KR  V+R ATIEEIEAEKS IE   + RME+
Sbjct: 39  LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
            I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97  AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKV +
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAI 209

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMU2|RRFC_ORYSI Ribosome-recycling factor, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_26546 PE=1 SV=2

 Score =  218 bits (556), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/173 (64%), Positives = 143/173 (82%), Gaps = 6/173 (3%)

Query: 51  WSSAANYSRL----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMER 106
            SS+ N+  L    ++  ++P+++ Q + KR  V+R ATIEEIEAEKS IE   + RME+
Sbjct: 39  LSSSTNFMSLRAGPMRFYSRPLIL-QNSDKR-AVLRHATIEEIEAEKSVIEDQARERMEK 96

Query: 107 TIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSL 166
            I+ V+ NFN+VRTGR+NPAMLD+IEVEYYG+PV+LKSIAQINTPD++SLLIQPYDKSSL
Sbjct: 97  AIETVQNNFNTVRTGRANPAMLDRIEVEYYGTPVNLKSIAQINTPDATSLLIQPYDKSSL 156

Query: 167 KSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           K IEK IV+++LG+TP+NDGEVIR+T+P LTS+RRKEL+K VAK AEEGKV +
Sbjct: 157 KLIEKTIVAANLGVTPSNDGEVIRVTVPPLTSDRRKELAKTVAKLAEEGKVAI 209

Responsible for the release of ribosomes from messenger RNA at the termination of chloroplastic protein biosynthesis.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q2JHW2|RRF_SYNJB Ribosome-recycling factor OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=frr PE=3 SV=1

 Score =  157 bits (396), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 71/119 (59%), Positives = 99/119 (83%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           +++  M + +   + +FN+VRTGR+N ++LD+I+VEYYG P  LK++A + TPDSS+LLI
Sbjct: 5   EIEELMNKAVQATQRSFNTVRTGRANSSLLDRIQVEYYGVPTPLKALASLTTPDSSTLLI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
           QP+D S+L +IE+AIV+SDLG+TP+NDG+V+RLT+P LT ERRKELSK VAK AEEG+V
Sbjct: 65  QPFDPSTLAAIERAIVASDLGLTPSNDGKVVRLTIPPLTEERRKELSKQVAKLAEEGRV 123

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

>sp|Q8YXK4|RRF_NOSS1 Ribosome-recycling factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=frr PE=3 SV=1

 Score =  155 bits (392), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/121 (57%), Positives = 99/121 (81%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + +++M+ T++  +  FN++RTGR+N ++LDK+ V+YYGSP  LKS+A I+TPD++++LI
Sbjct: 5   EAESKMQHTVEATQRAFNTIRTGRANASLLDKVLVDYYGSPTPLKSLANISTPDATTILI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           QPYDKSSL  +EKAI  SD+G+TP+NDG VIRL +P LTS+RRKEL K+ AK AEEG+V 
Sbjct: 65  QPYDKSSLNIVEKAISLSDVGLTPSNDGAVIRLNIPPLTSDRRKELVKIAAKYAEEGRVA 124

Query: 219 M 219
           +
Sbjct: 125 I 125

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q5N3B7|RRF_SYNP6 Ribosome-recycling factor OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=frr PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 100/121 (82%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L I
Sbjct: 5   DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           QP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKV 
Sbjct: 65  QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124

Query: 219 M 219
           +
Sbjct: 125 I 125

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (taxid: 269084)

>sp|Q31QY0|RRF_SYNE7 Ribosome-recycling factor OS=Synechococcus elongatus (strain PCC 7942) GN=frr PE=3 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 100/121 (82%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV++ M+++++    +FN++RTGR+N ++LDKI V+YYGS   LKS+A I+TPD+S+L I
Sbjct: 5   DVESTMQKSVEATLRSFNTIRTGRANASLLDKIVVDYYGSETPLKSLASISTPDASTLQI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           QP+D+SS+ +IEKAI  SD+G+TPNNDG++IRL +P LTS+RRKEL K+ AK AEEGKV 
Sbjct: 65  QPFDRSSMGAIEKAISLSDIGLTPNNDGQIIRLNIPPLTSDRRKELVKLAAKYAEEGKVA 124

Query: 219 M 219
           +
Sbjct: 125 I 125

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q8DM64|RRF_THEEB Ribosome-recycling factor OS=Thermosynechococcus elongatus (strain BP-1) GN=frr PE=3 SV=1

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 98/121 (80%)

Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           DV+ RM+++++  + +FNS+RTGR+N A+LD++ V+YYG+   L+S+A ++TPD++++LI
Sbjct: 5   DVEERMQKSVEATQHDFNSIRTGRANAALLDRVMVDYYGTETPLRSLANVSTPDATTILI 64

Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           QPYD+S+L SIEKAI  SDLG+TPNNDG  +RL +P LT+ERRKEL K  AK AE GKV 
Sbjct: 65  QPYDRSTLASIEKAIQLSDLGLTPNNDGSSVRLNIPPLTTERRKELVKTAAKIAEGGKVA 124

Query: 219 M 219
           +
Sbjct: 125 I 125

Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
118489544	286	unknown [Populus trichocarpa x Populus d	0.924	0.730	0.708	8e-80
224066503	286	predicted protein [Populus trichocarpa]	0.924	0.730	0.703	6e-79
388497414	231	unknown [Lotus japonicus]	0.907	0.887	0.669	1e-75
449444671	278	PREDICTED: ribosome-recycling factor, ch	0.955	0.776	0.691	8e-75
296085196	274	unnamed protein product [Vitis vinifera]	0.942	0.777	0.663	1e-73
147799481	222	hypothetical protein VITISV_026196 [Viti	0.929	0.945	0.663	2e-73
225437014	280	PREDICTED: ribosome-recycling factor, ch	0.951	0.767	0.651	2e-71
356536011	256	PREDICTED: LOW QUALITY PROTEIN: ribosome	0.867	0.765	0.646	5e-71
297821238	275	hypothetical protein ARALYDRAFT_907901 [	0.942	0.774	0.638	1e-70
18412657	275	ribosome-recycling factor [Arabidopsis t	0.942	0.774	0.638	1e-69

>gi|118489544|gb|ABK96574.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 153/216 (70%), Positives = 175/216 (81%), Gaps = 7/216 (3%)

Query: 11  MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
           +RSIFQ   NPPK LL L  S HR   RA+       + SV  WSS+ANYS L     KL
Sbjct: 14  LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVGYNSIGAASVSLWSSSANYSSLRNGSSKL 73

Query: 64  SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
           S KP+ V++L   R GVVR ATIEEIEAEKS IE D K RME+TID +RTNFNSVRTGR+
Sbjct: 74  SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRTNFNSVRTGRA 133

Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
           NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193

Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           NDGEVIR+++PQLTSERRKELSK+VAK AEEGKV +
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVAL 229

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066503|ref|XP_002302112.1| predicted protein [Populus trichocarpa] gi|222843838|gb|EEE81385.1| predicted protein [Populus trichocarpa]

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/216 (70%), Positives = 174/216 (80%), Gaps = 7/216 (3%)

Query: 11  MRSIFQLKSNPPKCLLFLPDSCHR---RAETATCRASSVSVRQWSSAANYSRL----VKL 63
           +RSIFQ   NPPK LL L  S HR   RA+       + SV  WSS+ANYS L     KL
Sbjct: 14  LRSIFQPNPNPPKALLSLTGSFHRGPHRAKVCYNSIGATSVSLWSSSANYSSLRNGSTKL 73

Query: 64  SNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRS 123
           S KP+ V++L   R GVVR ATIEEIEAEKS IE D K RME+TID +R NFNSVRTGR+
Sbjct: 74  SGKPVAVKRLLQNRRGVVRNATIEEIEAEKSLIEDDAKGRMEKTIDTMRANFNSVRTGRA 133

Query: 124 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPN 183
           NP+MLDKIEVEYYG+PVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEKAIVSSDLG+TPN
Sbjct: 134 NPSMLDKIEVEYYGTPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKAIVSSDLGLTPN 193

Query: 184 NDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           NDGEVIR+++PQLTSERRKELSK+VAK AEEGKV +
Sbjct: 194 NDGEVIRMSIPQLTSERRKELSKMVAKLAEEGKVAL 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497414|gb|AFK36773.1| unknown [Lotus japonicus]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 146/218 (66%), Positives = 172/218 (78%), Gaps = 13/218 (5%)

Query: 2   ATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLV 61
           AT FS   P+RSIFQ   NPPK  LFLP+S +        + SS+S          SR +
Sbjct: 3   ATSFSPATPVRSIFQ---NPPKTTLFLPESFY------GVKRSSISASASYVTLKLSRTL 53

Query: 62  KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
            LS KPI    L+H+R G+VR AT+EEIEAEK +IEKDV+ RME+TI+ VR+NFNS+RTG
Sbjct: 54  TLSAKPI----LSHRRMGIVRAATMEEIEAEKKAIEKDVRNRMEKTIENVRSNFNSIRTG 109

Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
           RSNP+MLDKIEVEYYG+P SLKSIAQI+ PD SSLL+QPYDKSSLK+IEKAIVSSDLGMT
Sbjct: 110 RSNPSMLDKIEVEYYGAPASLKSIAQISAPDGSSLLVQPYDKSSLKAIEKAIVSSDLGMT 169

Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           PNNDGEVIRL++PQLTS+RRKELSKVV+KQ EEGKV +
Sbjct: 170 PNNDGEVIRLSIPQLTSDRRKELSKVVSKQTEEGKVAL 207

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444671|ref|XP_004140097.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Cucumis sativus]

 Score =  285 bits (730), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 155/224 (69%), Positives = 177/224 (79%), Gaps = 8/224 (3%)

Query: 1   MATHFSSTGPMR-SIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSR 59
           MAT FS+T  +R S+FQ  + PPK LL L D  +       C + +  +  W SA+NY R
Sbjct: 1   MATPFSATASIRRSLFQ--NPPPKSLLSLRD-YNGGLNCVKCGSITAHLCSWKSASNYVR 57

Query: 60  LVK----LSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
           L +    +S +  V   +   R  VVR ATIEEIEAEK+ IEKDVKARME+TID VR+NF
Sbjct: 58  LNRQALVISTQLSVSGNVFKNRRLVVRAATIEEIEAEKTLIEKDVKARMEKTIDTVRSNF 117

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSNPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLKSIEKAIV+
Sbjct: 118 NSIRTGRSNPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKSIEKAIVN 177

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV +
Sbjct: 178 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAV 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085196|emb|CBI28691.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 172/223 (77%), Gaps = 10/223 (4%)

Query: 1   MATHFSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAAN 56
           MA  FS   P+R+IFQ KS +P  C    P  + CH     A T R+++  VR    A  
Sbjct: 1   MAMTFSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGARE 60

Query: 57  YSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFN 116
           YS       K  V ++   KR G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFN
Sbjct: 61  YS------GKLFVAKRNFQKRTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFN 114

Query: 117 SVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS 176
           S+RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSS
Sbjct: 115 SIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSS 174

Query: 177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           DLG+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKV +
Sbjct: 175 DLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVAL 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799481|emb|CAN77406.1| hypothetical protein VITISV_026196 [Vitis vinifera]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 150/226 (66%), Positives = 175/226 (77%), Gaps = 16/226 (7%)

Query: 1   MATHFSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETATCRASSVSVRQWSSAANY 57
           MA  FS   P+R+IFQ KS +P  C    P  + CH     A       ++R   SAANY
Sbjct: 1   MAMTFSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIA------FTLR---SAANY 51

Query: 58  SRLV----KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRT 113
            RL     + S K IV ++   KR G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRT
Sbjct: 52  XRLGDGAREYSGKLIVAKRNFQKRTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRT 111

Query: 114 NFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI 173
           NFNS+RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAI
Sbjct: 112 NFNSIRTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAI 171

Query: 174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           VSSDLG+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGK ++
Sbjct: 172 VSSDLGLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKGII 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437014|ref|XP_002272648.1| PREDICTED: ribosome-recycling factor, chloroplastic-like [Vitis vinifera]

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 144/221 (65%), Positives = 172/221 (77%), Gaps = 6/221 (2%)

Query: 5   FSSTGPMRSIFQLKS-NPPKCLLFLP--DSCHRRAETA-TCRASSVSVRQWSSAANYSRL 60
           FS   P+R+IFQ KS +P  C    P  + CH     A T R+++  VR    A  YS  
Sbjct: 3   FSPATPVRTIFQRKSLSPGGCYCRGPGYEKCHLNIGIAFTLRSAANYVRLGDGAREYSGK 62

Query: 61  VKLSNKPIVVRQLA--HKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSV 118
           + ++ +    RQ+     + G+ RCATIEEIEAEKSSIEKDVK RME+TI+ VRTNFNS+
Sbjct: 63  LFVAKRNFQKRQVESYGYKTGIFRCATIEEIEAEKSSIEKDVKERMEKTIETVRTNFNSI 122

Query: 119 RTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDL 178
           RTGR+NPA+LD++EVEYYG+PVSLKSIAQI+TPDS+SLL+QPYDKSSLK IEKAIVSSDL
Sbjct: 123 RTGRANPAILDRVEVEYYGTPVSLKSIAQISTPDSASLLVQPYDKSSLKVIEKAIVSSDL 182

Query: 179 GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           G+TPNNDGEVIRL+LPQLTSERRKELSKVVAKQ EEGKV +
Sbjct: 183 GLTPNNDGEVIRLSLPQLTSERRKELSKVVAKQTEEGKVAL 223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536011|ref|XP_003536534.1| PREDICTED: LOW QUALITY PROTEIN: ribosome-recycling factor, chloroplastic-like [Glycine max]

 Score =  273 bits (697), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/218 (64%), Positives = 168/218 (77%), Gaps = 22/218 (10%)

Query: 2   ATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRLV 61
           +T FS T  +RSI   K NPPK LL L                    R ++S+A+Y+ L 
Sbjct: 4   STSFSPTASVRSIIFQKQNPPKALLLLSQQ-----------------RSFASSASYATL- 45

Query: 62  KLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTG 121
           KL  +P+    L+  R  +VR ATIEEIEAEK++IEKD K+RM+RTID VRTNF+S+RTG
Sbjct: 46  KLPRRPL----LSXGRTPLVRAATIEEIEAEKAAIEKDAKSRMDRTIDNVRTNFSSIRTG 101

Query: 122 RSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT 181
           R+NPAMLDKIEVEYYGSPVSLKSIAQI+TPD+SSLL+QPYDKSSLK+IEK IVSSDLGMT
Sbjct: 102 RANPAMLDKIEVEYYGSPVSLKSIAQISTPDASSLLVQPYDKSSLKAIEKTIVSSDLGMT 161

Query: 182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           PNNDGE I+L +PQLTS+RRKELSK+VAKQAEEGKV +
Sbjct: 162 PNNDGESIQLRIPQLTSDRRKELSKIVAKQAEEGKVAL 199

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821238|ref|XP_002878502.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata] gi|297324340|gb|EFH54761.1| hypothetical protein ARALYDRAFT_907901 [Arabidopsis lyrata subsp. lyrata]

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 171/224 (76%), Gaps = 11/224 (4%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCR-----ASSVSVRQWSSAA 55
           MA  FSS  P   + Q ++N  K +L LPDSC R   +A C      A S+   +    A
Sbjct: 1   MAASFSSIAPTTPVLQFRANYSKSILSLPDSCLRIISSARCPSARLIACSLKTEKLPLGA 60

Query: 56  NYSRLVKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
                V LS  P+V R L  ++  V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 61  G----VNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           SDLG+TPNNDG+VIRL+LP LTSERRKELSKVVAKQ+EEGKV +
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSERRKELSKVVAKQSEEGKVAL 218

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412657|ref|NP_567141.1| ribosome-recycling factor [Arabidopsis thaliana] gi|22001953|sp|Q9M1X0.2|RRFC_ARATH RecName: Full=Ribosome-recycling factor, chloroplastic; Short=RRF; AltName: Full=CpFrr; AltName: Full=RRFHCP; AltName: Full=Ribosome-releasing factor, chloroplastic; Flags: Precursor gi|13926252|gb|AAK49599.1|AF372883_1 AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|15982709|gb|AAL09724.1| AT3g63190/F16M2_40 [Arabidopsis thaliana] gi|20260166|gb|AAM12981.1| putative protein [Arabidopsis thaliana] gi|27363350|gb|AAO11594.1| At3g63190/F16M2_40 [Arabidopsis thaliana] gi|332646925|gb|AEE80446.1| ribosome-recycling factor [Arabidopsis thaliana]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 143/224 (63%), Positives = 173/224 (77%), Gaps = 11/224 (4%)

Query: 1   MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSSAANYSRL 60
           MA  FSST P   + + ++N  K LL LPDSC R   +A     S S R  + +    +L
Sbjct: 1   MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAI----SPSTRLIACSFKTDKL 56

Query: 61  -----VKLSNKPIVVRQLAHKRNGVVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNF 115
                V LS  P+V R L  ++  V+R ATIEEIEAEKS+IE DVK++ME+TI+ +RT+F
Sbjct: 57  PLGAGVNLSGGPVVKRSL--QKRLVIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSF 114

Query: 116 NSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVS 175
           NS+RTGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+
Sbjct: 115 NSIRTGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVN 174

Query: 176 SDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           SDLG+TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKV +
Sbjct: 175 SDLGVTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVAL 218

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2077254	275	RRF ""ribosome recycling facto	0.960	0.789	0.590	4e-58
TIGR_CMR|CHY_1784	185	CHY_1784 "ribosome recycling f	0.535	0.654	0.479	2.4e-28
TIGR_CMR|BA_3962	185	BA_3962 "ribosome recycling fa	0.517	0.632	0.478	4.5e-27
TIGR_CMR|DET_0374	185	DET_0374 "ribosome recycling f	0.517	0.632	0.470	4.5e-27
TIGR_CMR|GSU_1918	185	GSU_1918 "ribosome recycling f	0.535	0.654	0.429	9.4e-27
UNIPROTKB|P0A805	185	frr "ribosome recycling factor	0.535	0.654	0.438	2.5e-26
UNIPROTKB|P66734	185	frr "Ribosome-recycling factor	0.526	0.643	0.428	8.4e-26
TIGR_CMR|CPS_1556	185	CPS_1556 "ribosome recycling f	0.535	0.654	0.446	1.1e-25
TIGR_CMR|SO_1632	185	SO_1632 "ribosome recycling fa	0.535	0.654	0.413	3.3e-24
TIGR_CMR|VC_2257	185	VC_2257 "ribosome recycling fa	0.535	0.654	0.396	1.4e-23

TAIR|locus:2077254 RRF ""ribosome recycling factor, chloroplast precursor"" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 130/220 (59%), Positives = 159/220 (72%)

Query:     1 MATHFSSTGPMRSIFQLKSNPPKCLLFLPDSCHRRAETATCRASSVSVRQWSS-AANYSR 59
             MA  FSST P   + + ++N  K LL LPDSC R   +A   ++ +    + +       
Sbjct:     1 MAASFSSTAPTTPVLRFRANYSKPLLSLPDSCLRIISSAISPSTRLIACSFKTDKLPLGA 60

Query:    60 LVKLSNKPIVVRQLAHKRNGVVRCATXXXXXXXXXXXXXDVKARMERTIDMVRTNFNSVR 119
              V LS  P+V R L  KR  V+R AT             DVK++ME+TI+ +RT+FNS+R
Sbjct:    61 GVNLSGGPVVKRSL-QKRL-VIRSATIEEIEAEKSAIETDVKSKMEKTIETLRTSFNSIR 118

Query:   120 TGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLG 179
             TGRSN AMLDKIEVEYYGSPVSLKSIAQI+TPD SSLL+QPYDKSSLK+IEKAIV+SDLG
Sbjct:   119 TGRSNAAMLDKIEVEYYGSPVSLKSIAQISTPDGSSLLLQPYDKSSLKAIEKAIVNSDLG 178

Query:   180 MTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
             +TPNNDG+VIRL+LP LTS+RRKELSKVVAKQ+EEGKV +
Sbjct:   179 VTPNNDGDVIRLSLPPLTSDRRKELSKVVAKQSEEGKVAL 218

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0032544 "plastid translation" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TIGR_CMR|CHY_1784 CHY_1784 "ribosome recycling factor" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 58/121 (47%), Positives = 89/121 (73%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             + +  M++ I++++  F ++R GR+ PA+L+K+ VEYYG+ + +  +A I+ P+   L+I
Sbjct:     8 EAQDHMQKAIEVLKKEFATMRVGRATPALLEKVVVEYYGTQMPVNQLATISAPEPRLLVI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             QP+DK +L +IEKAI+ SDLG+TP NDG VIRL +P LT ERR+EL KV  K+AEE +V 
Sbjct:    68 QPWDKGALGAIEKAILKSDLGITPTNDGSVIRLAIPPLTQERRQELVKVARKKAEEARVA 127

Query:   219 M 219
             +
Sbjct:   128 I 128

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|BA_3962 BA_3962 "ribosome recycling factor" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 56/117 (47%), Positives = 83/117 (70%)

Query:   103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
             +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYD
Sbjct:    12 KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 71

Query:   163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
             K+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KV +
Sbjct:    72 KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAV 128

GO:0006415 "translational termination" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|DET_0374 DET_0374 "ribosome recycling factor" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 55/117 (47%), Positives = 84/117 (71%)

Query:   103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
             +M  ++D++    + +RTGRS+PA+++ I+VEY G P  +  +A I  PD   + IQP+D
Sbjct:    12 KMAASLDVLSQELSGIRTGRSSPALVEHIKVEYAGVPTPINHLASIAAPDPRYITIQPWD 71

Query:   163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
             +S L +IEKAI+ SDLG+ PNNDG +IRL +P L+ ERR+E+ K+V+K+ EE K+ M
Sbjct:    72 RSCLSAIEKAIMKSDLGLMPNNDGNIIRLNIPPLSEERRQEMIKMVSKRLEEDKIAM 128

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|GSU_1918 GSU_1918 "ribosome recycling factor" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 52/121 (42%), Positives = 88/121 (72%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D+K+ ME++++ +R  +  VRTGR+N  +LD+I V++YG+P  L  +A +  P+  ++ I
Sbjct:     8 DMKSHMEKSVESLRREYQKVRTGRANTGLLDEIRVDFYGNPSPLNQVATLAVPEPRTITI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             QP++   +  IEKAI++++LG TP+NDG++IR++LP LT ERRKE+ K + K AE+ K+ 
Sbjct:    68 QPWETKMIPVIEKAILNANLGFTPSNDGKLIRISLPPLTEERRKEIVKSLKKTAEDAKIA 127

Query:   219 M 219
             +
Sbjct:   128 I 128

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|P0A805 frr "ribosome recycling factor" [Escherichia coli K-12 (taxid:83333)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 53/121 (43%), Positives = 86/121 (71%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct:     8 DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
               +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct:    68 NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127

Query:   219 M 219
             +
Sbjct:   128 V 128

GO:0043022 "ribosome binding" evidence=IDA

GO:0032790 "ribosome disassembly" evidence=IMP

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

UNIPROTKB|P66734 frr "Ribosome-recycling factor" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/119 (42%), Positives = 83/119 (69%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  ++I
Sbjct:     8 DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
             +PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV
Sbjct:    68 KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKV 126

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006415 "translational termination" evidence=IDA

GO:0008079 "translation termination factor activity" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|CPS_1556 CPS_1556 "ribosome recycling factor" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 54/121 (44%), Positives = 84/121 (69%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM ++I+ ++T+   +RTGR++ ++LD I VEYYG    L  +  ++ PD+ +L I
Sbjct:     8 DAQDRMGKSIEALKTSLTKIRTGRAHASLLDNIVVEYYGMDTPLNQVGNVSVPDARNLSI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
               +DKS + ++EKAI+ SDLG+ P ++G +IR+ LP LT ERRK+L KVV  +AE GKV 
Sbjct:    68 TVFDKSMISAVEKAIMKSDLGLNPQSNGTLIRIPLPPLTEERRKDLVKVVRGEAEGGKVA 127

Query:   219 M 219
             +
Sbjct:   128 I 128

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|SO_1632 SO_1632 "ribosome recycling factor" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 50/121 (41%), Positives = 81/121 (66%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RM + +D  +     VRTGR++P++LD I+V YYG+   L  +A +   D+ +L +
Sbjct:     8 DAQERMGKCVDATKNQMAKVRTGRAHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSV 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
               +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+V 
Sbjct:    68 TVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVA 127

Query:   219 M 219
             +
Sbjct:   128 I 128

GO:0006412 "translation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

TIGR_CMR|VC_2257 VC_2257 "ribosome recycling factor" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 48/121 (39%), Positives = 82/121 (67%)

Query:    99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
             D + RME++++ ++   + +RTGR++P++L  I V+YYG+P  L  +A +   D+ +L I
Sbjct:     8 DAQERMEKSVEALKNGLSKIRTGRAHPSLLTGISVDYYGAPTPLNQVANVIAEDARTLAI 67

Query:   159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
               +D+   + +EKAI+ SDLG+ P + G +IR+ LP LT ERR++L K+V  +AE G+V 
Sbjct:    68 TVFDRELTQKVEKAILMSDLGLNPMSAGTIIRVPLPPLTEERRRDLVKIVRGEAEGGRVA 127

Query:   219 M 219
             +
Sbjct:   128 V 128

GO:0006417 "regulation of translation" evidence=ISS

GO:0045182 "translation regulator activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLC3	RRFC_ORYSJ	No assigned EC number	0.6416	0.7389	0.6278	yes	no
Q9M1X0	RRFC_ARATH	No assigned EC number	0.6383	0.9424	0.7745	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_II0778	hypothetical protein (286 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_XIV000511	hypothetical protein; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to [...] (323 aa)	•			•			•		0.965
	gw1.IV.3048.1	SubName- Full=Putative uncharacterized protein; (227 aa)				•	•		•		0.908
	gw1.XIII.2339.1	hypothetical protein (201 aa)	•						•		0.906
	estExt_fgenesh4_pg.C_700026	hypothetical protein (250 aa)	•			•			•		0.906
	gw1.XI.3444.1	hypothetical protein (174 aa)	•		•	•	•		•		0.901
	gw1.16155.2.1	Predicted protein (206 aa)				•	•		•		0.895
	eugene3.160500001	Predicted protein (113 aa)	•		•		•		•		0.883
	eugene3.00141000	hypothetical protein (227 aa)				•	•		•		0.873
	gw1.I.3103.1	hypothetical protein (176 aa)				•	•		•		0.869
	gw1.X.2992.1	hypothetical protein (234 aa)	•			•			•		0.859

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
PRK00083	185	PRK00083, frr, ribosome recycling factor; Reviewed	8e-63
COG0233	187	COG0233, Frr, Ribosome recycling factor [Translati	2e-53
cd00520	179	cd00520, RRF, Ribosome recycling factor (RRF)	1e-51
pfam01765	165	pfam01765, RRF, Ribosome recycling factor	5e-51
TIGR00496	176	TIGR00496, frr, ribosome recycling factor	7e-45

>gnl|CDD|178850 PRK00083, frr, ribosome recycling factor; Reviewed

 Score =  193 bits (493), Expect = 8e-63
 Identities = 69/122 (56%), Positives = 93/122 (76%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I KD + RME+ ++ ++     +RTGR+NP++LD I+V+YYGSP  L  +A I+ P++ +
Sbjct: 5   ILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           LLIQP+DKS LK+IEKAI +SDLG+ P+NDG VIRL +P LT ERRKEL K V K+AEE 
Sbjct: 65  LLIQPWDKSMLKAIEKAIRASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEA 124

Query: 216 KV 217
           KV
Sbjct: 125 KV 126

Length = 185

>gnl|CDD|223311 COG0233, Frr, Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

 Score =  169 bits (431), Expect = 2e-53
 Identities = 66/128 (51%), Positives = 95/128 (74%)

Query: 90  EAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQIN 149
               + I KD + +ME+ ++ ++   + +RTGR+NP++LD+I VEYYGSP  L  +A I+
Sbjct: 1   MMMINEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASIS 60

Query: 150 TPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVA 209
            P++ +L+I+P+DKS +K+IEKAI++S+LG+ PNNDG VIR+ LP LT ERRKEL KV  
Sbjct: 61  VPEARTLVIKPFDKSMVKAIEKAILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAK 120

Query: 210 KQAEEGKV 217
           K AEE KV
Sbjct: 121 KYAEEAKV 128

Length = 187

>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF)

 Score =  164 bits (418), Expect = 1e-51
 Identities = 66/122 (54%), Positives = 92/122 (75%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I K+ K +ME++++ ++   N +RTGR+NPA+LD I VEYYG+P  L  +A I+ P+  +
Sbjct: 1   ILKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRT 60

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I P+DKS++K+IEKAI++SDLG+ PNNDG VIR+ LP LT ERRKEL K   K AEE 
Sbjct: 61  IVINPFDKSAIKAIEKAILNSDLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEA 120

Query: 216 KV 217
           KV
Sbjct: 121 KV 122

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species. Length = 179

>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor

 Score =  162 bits (413), Expect = 5e-51
 Identities = 59/106 (55%), Positives = 80/106 (75%)

Query: 112 RTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEK 171
           +   + +RTGR+NP++LD I V+YYGSP  L  +A I+ P++ +LLI P+DKS +K+IEK
Sbjct: 3   KKELSKIRTGRANPSLLDGIRVDYYGSPTPLNQLASISVPEARTLLITPWDKSLIKAIEK 62

Query: 172 AIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
           AI++SDLG+ P NDG+VIR+ +P LT ERRKEL K   K AEE KV
Sbjct: 63  AILASDLGLNPQNDGQVIRIPIPPLTEERRKELVKQAKKLAEEAKV 108

The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth. Thus ribosomes are "recycled" and ready for another round of protein synthesis. Length = 165

>gnl|CDD|129587 TIGR00496, frr, ribosome recycling factor

 Score =  147 bits (373), Expect = 7e-45
 Identities = 62/117 (52%), Positives = 87/117 (74%)

Query: 101 KARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQP 160
           K RM+++I  ++   + +RTGR+NP++LD+I VEYYG+P  L+ +A +  PD+ +L+IQP
Sbjct: 1   KERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQP 60

Query: 161 YDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
           +DKS++ +IEKAI  SDLG+ PNNDG VIR+  P LT ERRKEL K   K AE+ KV
Sbjct: 61  FDKSNINAIEKAIQRSDLGLNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKV 117

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily [Protein synthesis, Translation factors]. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
COG0233	187	Frr Ribosome recycling factor [Translation, riboso	100.0
PRK00083	185	frr ribosome recycling factor; Reviewed	100.0
cd00520	179	RRF Ribosome recycling factor (RRF). Ribosome recy	100.0
TIGR00496	176	frr ribosome recycling factor. This model finds on	100.0
PF01765	165	RRF: Ribosome recycling factor; InterPro: IPR02358	100.0
KOG4759	263	consensus Ribosome recycling factor [Translation,	100.0

>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-46  Score=317.81  Aligned_cols=132  Identities=50%  Similarity=0.852  Sum_probs=129.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHH
Q 027212           93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKA  172 (226)
Q Consensus        93 ~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekA  172 (226)
                      +..++++++++|++++++|+++|++||+||+||++||+|.|+|||.++||+|||+|+++++|+|+|+|||++.+++|++|
T Consensus         4 ~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Ieka   83 (187)
T COG0233           4 INEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKA   83 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          173 IVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       173 I~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      |..|||||||.+||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        84 I~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRr  135 (187)
T COG0233          84 ILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRR  135 (187)
T ss_pred             HHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999975

>PRK00083 frr ribosome recycling factor; Reviewed

Probab=100.00  E-value=7.2e-45  Score=310.76  Aligned_cols=131  Identities=53%  Similarity=0.865  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      +.++.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++|+++|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI   82 (185)
T PRK00083          3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI   82 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++++|.||+++|+||++||++|.
T Consensus        83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr  133 (185)
T PRK00083         83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRR  133 (185)
T ss_pred             HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974

>cd00520 RRF Ribosome recycling factor (RRF)

Probab=100.00  E-value=1.2e-43  Score=301.37  Aligned_cols=128  Identities=51%  Similarity=0.865  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhC
Q 027212           97 EKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS  176 (226)
Q Consensus        97 l~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~S  176 (226)
                      +++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||||+++|+++|+|+|||++++++|++||++|
T Consensus         2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s   81 (179)
T cd00520           2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS   81 (179)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          177 DLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       177 nLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      |||+||++||+.|+|+||+||+|+|++++|.||+.+|+||++||++|.
T Consensus        82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~  129 (179)
T cd00520          82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRR  129 (179)
T ss_pred             CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999874

Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.

>TIGR00496 frr ribosome recycling factor

Probab=100.00  E-value=9.6e-44  Score=301.73  Aligned_cols=123  Identities=50%  Similarity=0.858  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhCCCCCC
Q 027212          102 ARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMT  181 (226)
Q Consensus       102 ~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~SnLgln  181 (226)
                      ++|++++++|+++|++||+||+||++||+|+|+|||+++||++||||+++|+++|+|+|||++++++|++||++||||||
T Consensus         2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln   81 (176)
T TIGR00496         2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN   81 (176)
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          182 PNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       182 Pq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      |++||+.|||+||+||+|+|++++|.||+.+|+||++||++|.
T Consensus        82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr  124 (176)
T TIGR00496        82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRR  124 (176)
T ss_pred             cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999985

This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.

>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []

Probab=100.00  E-value=2.9e-38  Score=264.28  Aligned_cols=115  Identities=49%  Similarity=0.765  Sum_probs=111.5

Q ss_pred             HHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhCCCCCCccCCCCeE
Q 027212          110 MVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVI  189 (226)
Q Consensus       110 ~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~SnLglnPq~DG~~I  189 (226)
                      ||+++|+++|+||+||++||+|+|+|||+.+||++||||+++|+++|+|+|||++++++|++||++|||||||+.||+.|
T Consensus         1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i   80 (165)
T PF01765_consen    1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI   80 (165)
T ss_dssp             HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred             ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          190 RLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       190 rV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      +|+||+||+|+|++++|.||+++|+||++||++|.
T Consensus        81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~  115 (165)
T PF01765_consen   81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRR  115 (165)
T ss_dssp             EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999985

Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....

>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-37  Score=276.57  Aligned_cols=145  Identities=39%  Similarity=0.599  Sum_probs=139.1

Q ss_pred             ccccCchhhhHHhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEe
Q 027212           80 VVRCATIEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQ  159 (226)
Q Consensus        80 ~v~~~~~eei~~e~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~  159 (226)
                      ......+++.+.|...++.+++++|+++++.|+++|+++++||++|++||+|.|++||.++||++||||+.+||++|+|+
T Consensus        68 ~~~~~~in~~~~e~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn  147 (263)
T KOG4759|consen   68 DHGTEKINEAELEENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILIN  147 (263)
T ss_pred             CCchhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEe
Confidence            33666677777778888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecC-cccHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          160 PYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       160 pyD-~s~ik~IekAI~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ||| |..|++|++||.+|+|||||++||.+|+|+||++|.|+|++|+|.+++++|++|++||.++|
T Consensus       148 ~~d~p~~ikai~kAI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~  213 (263)
T KOG4759|consen  148 PFDFPVDIKAILKAIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRT  213 (263)
T ss_pred             cccCchHHHHHHHHHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999 99999999999999999999999999999999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
4gfq_A	209	2.65 Angstrom Resolution Crystal Structure Of Ribos		3e-29
1eh1_A	185	Ribosome Recycling Factor From Thermus Thermophilus		3e-28
1wqf_A	185	Crystal Structure Of Ribosome Recycling Factor From		3e-28
1ek8_A	185	Crystal Structure Of The Ribosome Recycling Factor		5e-27
4gd1_Y	183	Structures Of The Bacterial Ribosome In Classical A		5e-27
1ise_A	185	Crystal Structure Of A Mutant Of Ribosome Recycling		5e-27
1is1_A	185	Crystal Structure Of Ribosome Recycling Factor From		8e-25
1dd5_A	185	Crystal Structure Of Thermotoga Maritima Ribosome R		2e-24
1ge9_A	184	Solution Structure Of The Ribosome Recycling Factor		6e-19

>pdb|4GFQ|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of Ribosome Recycling Factor (Frr) From Bacillus Anthracis Length = 209

Iteration: 1
 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 83/117 (70%)
Query: 103 RMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD 162
           +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  L+IQPYD
Sbjct: 36  KMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYD 95
Query: 163 KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVM 219
           K+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KV +
Sbjct: 96  KTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAV 152

>pdb|1EH1|A Chain A, Ribosome Recycling Factor From Thermus Thermophilus Length = 185

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 88/121 (72%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +L++
Sbjct: 9   ETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVV 68
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG+V 
Sbjct: 69  QSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVA 128
Query: 219 M 219
           +
Sbjct: 129 I 129

>pdb|1WQF|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Mycobacterium Tuberculosis Length = 185

Iteration: 1
 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 83/119 (69%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  ++I
Sbjct: 8   DAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV 217
           +PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV
Sbjct: 68  KPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKV 126

>pdb|1EK8|A Chain A, Crystal Structure Of The Ribosome Recycling Factor (Rrf) From Escherichia Coli Length = 185

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 M 219
           +
Sbjct: 128 V 128

>pdb|4GD1|Y Chain Y, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 183

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 M 219
           +
Sbjct: 128 V 128

>pdb|1ISE|A Chain A, Crystal Structure Of A Mutant Of Ribosome Recycling Factor From Escherichia Coli, Arg132gly Length = 185

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 86/121 (71%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +L I
Sbjct: 8   DAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ +V 
Sbjct: 68  NVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVA 127
Query: 219 M 219
           +
Sbjct: 128 V 128

>pdb|1IS1|A Chain A, Crystal Structure Of Ribosome Recycling Factor From Vibrio Parahaemolyticus Length = 185

Iteration: 1
 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 82/121 (67%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           D + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +L I
Sbjct: 8   DAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
             +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G+V 
Sbjct: 68  TVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVA 127
Query: 219 M 219
           +
Sbjct: 128 V 128

>pdb|1DD5|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Recycling Factor, Rrf Length = 185

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 82/121 (67%)
Query: 99  DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLI 158
           + K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +L+I
Sbjct: 8   EAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVI 67
Query: 159 QPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVV 218
           +P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEGK+ 
Sbjct: 68  KPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIA 127
Query: 219 M 219
           +
Sbjct: 128 I 128

>pdb|1GE9|A Chain A, Solution Structure Of The Ribosome Recycling Factor Length = 184

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 76/112 (67%), Gaps = 1/112 (0%)
Query: 104 MERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDK 163
           M++ ++  +     +RT R++ A++++I+VEYYGS V +K +  I+ P+ + ++IQ +D+
Sbjct: 16  MKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQ 75
Query: 164 SSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           +++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL +++ K  EE 
Sbjct: 76  NAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEA 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	2e-63
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	4e-63
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	2e-62
1wqg_A	185	Ribosome recycling factor; translation factor, tri	2e-62
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	3e-62
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	4e-62
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	2e-58
1wih_A	84	Mitochondrial ribosome recycling factor; structura	3e-35
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	1e-23
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	3e-22

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C Length = 185

 Score =  194 bits (496), Expect = 2e-63
 Identities = 52/122 (42%), Positives = 82/122 (67%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
             K+ K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  +
Sbjct: 5   FIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERT 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EEG
Sbjct: 65  LVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEG 124

Query: 216 KV 217
           K+
Sbjct: 125 KI 126

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G Length = 185

 Score =  193 bits (494), Expect = 4e-63
 Identities = 52/122 (42%), Positives = 88/122 (72%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           +  + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +
Sbjct: 6   LYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRT 65

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG
Sbjct: 66  LVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEG 125

Query: 216 KV 217
           +V
Sbjct: 126 RV 127

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis} Length = 209

 Score =  192 bits (491), Expect = 2e-62
 Identities = 57/122 (46%), Positives = 84/122 (68%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           + K    +ME+ +        +VR GR++ ++LDK++V+YYG+P  +  +A I  P++  
Sbjct: 29  VLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARL 88

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE 
Sbjct: 89  LVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEA 148

Query: 216 KV 217
           KV
Sbjct: 149 KV 150

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A Length = 185

 Score =  191 bits (489), Expect = 2e-62
 Identities = 51/122 (41%), Positives = 83/122 (68%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
              D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  
Sbjct: 5   ALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARL 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE 
Sbjct: 65  VVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEA 124

Query: 216 KV 217
           KV
Sbjct: 125 KV 126

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8 Length = 185

 Score =  191 bits (487), Expect = 3e-62
 Identities = 55/122 (45%), Positives = 87/122 (71%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I KD + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS +
Sbjct: 5   IRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRT 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE+ 
Sbjct: 65  LKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQA 124

Query: 216 KV 217
           +V
Sbjct: 125 RV 126

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y Length = 185

 Score =  191 bits (487), Expect = 4e-62
 Identities = 53/122 (43%), Positives = 84/122 (68%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I+KD + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +
Sbjct: 5   IKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G
Sbjct: 65  LAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGG 124

Query: 216 KV 217
           +V
Sbjct: 125 RV 126

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1 Length = 184

 Score =  181 bits (463), Expect = 2e-58
 Identities = 46/122 (37%), Positives = 82/122 (67%), Gaps = 1/122 (0%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I K+ +  M++ ++  +     +RT R++ A++++I+VEYYGS V +K +  I+ P+ + 
Sbjct: 8   IFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQ 67

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++IQ +D++++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL +++ K  EE 
Sbjct: 68  IVIQVWDQNAVPAIEKAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEA 126

Query: 216 KV 217
           +V
Sbjct: 127 RV 128

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1 Length = 84

 Score =  119 bits (300), Expect = 3e-35
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLG 179
           G S  + LD I V      V+L  I QI+      +L+          +  KAI  S + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 180 MTPNNDGEVIRLTLPQLTSERRK 202
           + P  +G +IR+ +P++TS    
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8 Length = 123

 Score = 90.7 bits (226), Expect = 1e-23
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
              I    K +   ++KA+ +    +        +R   P  T ER K+  K+V  +AE+
Sbjct: 6   HGSISDIRKDAEVRMDKAVEAFKNKLDKFKA--AVRKVFP--TEERIKDWLKIVRGEAEQ 61

Query: 215 GKV 217
            +V
Sbjct: 62  ARV 64

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene} Length = 121

 Score = 86.9 bits (216), Expect = 3e-22
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 157 LIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGK 216
           +I    K + + ++K++ +    ++    G          T ERRK+L K+V  +AE G+
Sbjct: 1   MINEIKKDAQERMDKSVEALKNNLSKVRTGG-------GGTEERRKDLVKIVRGEAEGGR 53

Query: 217 V 217
           V
Sbjct: 54  V 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
1dd5_A	185	Ribosome recycling factor; three-helix bundle, bet	100.0
1ise_A	185	Ribosome recycling factor; translation; 2.20A {Esc	100.0
1wqg_A	185	Ribosome recycling factor; translation factor, tri	100.0
1is1_A	185	Ribosome recycling factor; translation; 2.20A {Vib	100.0
4gfq_A	209	Ribosome-recycling factor; structural genomics, ni	100.0
1eh1_A	185	Ribosome recycling factor; translation, hinge vari	100.0
1ge9_A	184	Ribosome recycling factor; three-helix bundle; NMR	100.0
1wih_A	84	Mitochondrial ribosome recycling factor; structura	100.0
3lf9_A	121	4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immu	99.09
3lhp_S	123	4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immun	98.75
4hhu_A	170	OR280; engineered protein, PSI-biology, structural	87.6

>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C

Probab=100.00  E-value=3.1e-47  Score=324.40  Aligned_cols=131  Identities=40%  Similarity=0.712  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++++++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   82 (185)
T 1dd5_A            3 NPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAI   82 (185)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  133 (185)
T 1dd5_A           83 NASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRR  133 (185)
T ss_dssp             HHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8

Probab=100.00  E-value=3.1e-47  Score=324.36  Aligned_cols=131  Identities=43%  Similarity=0.745  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   82 (185)
T 1ise_A            3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  133 (185)
T 1ise_A           83 MASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGR  133 (185)
T ss_dssp             HTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A

Probab=100.00  E-value=3.3e-47  Score=324.22  Aligned_cols=131  Identities=39%  Similarity=0.741  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   82 (185)
T 1wqg_A            3 DEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  133 (185)
T 1wqg_A           83 RNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRR  133 (185)
T ss_dssp             HHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y

Probab=100.00  E-value=3.2e-47  Score=324.27  Aligned_cols=131  Identities=40%  Similarity=0.727  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++.+++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus         3 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   82 (185)
T 1is1_A            3 NEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        83 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  133 (185)
T 1is1_A           83 MMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRR  133 (185)
T ss_dssp             HHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}

Probab=100.00  E-value=3.7e-47  Score=328.98  Aligned_cols=131  Identities=44%  Similarity=0.754  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      .+++++++++|++++++|+++|++||+|||||++||+|+|+|||+++||+|||+|+++++++|+|+|||++++++|++||
T Consensus        27 ~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~IekAI  106 (209)
T 4gfq_A           27 QQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAI  106 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus       107 ~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRr  157 (209)
T 4gfq_A          107 LKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRR  157 (209)
T ss_dssp             HHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G

Probab=100.00  E-value=3.2e-47  Score=324.28  Aligned_cols=131  Identities=40%  Similarity=0.754  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++++++++|++++++|+++|++||+||+||++||+|+|+|||+++||+|||+|+++++|+|+|+|||++++++|++||
T Consensus         4 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   83 (185)
T 1eh1_A            4 KELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEKAI   83 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        84 ~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  134 (185)
T 1eh1_A           84 RDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRR  134 (185)
T ss_dssp             SSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974

>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1

Probab=100.00  E-value=2.1e-46  Score=319.06  Aligned_cols=130  Identities=35%  Similarity=0.650  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+|||+|+++|+|+|+|+|||++++++|++||
T Consensus         6 ~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekAI   85 (184)
T 1ge9_A            6 EDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKAI   85 (184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++ ||||||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        86 ~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRr  135 (184)
T 1ge9_A           86 RE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRR  135 (184)
T ss_dssp             HH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99 999999999999999999999999999999999999999999999874

>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1

Probab=100.00  E-value=1.6e-34  Score=218.53  Aligned_cols=82  Identities=28%  Similarity=0.413  Sum_probs=80.9

Q ss_pred             CCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecC-cccHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 027212          121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE  199 (226)
Q Consensus       121 GRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD-~s~ik~IekAI~~SnLglnPq~DG~~IrV~IP~lT~E  199 (226)
                      |||||++||+|+|+|||+++||+|||+|+++|+|+|+|+||| ++++++|+|||++|||||||++||+.|||+||+||+|
T Consensus         1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE   80 (84)
T 1wih_A            1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence            899999999999999999999999999999999999999988 8999999999999999999999999999999999999


Q ss_pred             HHH
Q 027212          200 RRK  202 (226)
Q Consensus       200 ~Rk  202 (226)
                      +|+
T Consensus        81 rR~   83 (84)
T 1wih_A           81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            996

>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}

Probab=99.09  E-value=2.3e-10  Score=91.24  Aligned_cols=59  Identities=37%  Similarity=0.613  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++|-++++.+|+++++.|+.+++++|+||                                                   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------   31 (121)
T 3lf9_A            3 NEIKKDAQERMDKSVEALKNNLSKVRTGG---------------------------------------------------   31 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCSS---------------------------------------------------
T ss_pred             hHHHhhHHHHHHHHHHHHHHhhHhhcCCC---------------------------------------------------
Confidence            56778999999999999999999999986                                                   


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                                           +||+|+|++|+|+|++++|+||++||++|.
T Consensus        32 ---------------------plTEERRKeLVK~akk~aEeaKVAIRNIRR   61 (121)
T 3lf9_A           32 ---------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIAR   61 (121)
T ss_dssp             ---------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence                                 689999999999999999999999999874

>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8

Probab=98.75  E-value=1.1e-09  Score=87.71  Aligned_cols=38  Identities=29%  Similarity=0.338  Sum_probs=35.5

Q ss_pred             CCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          185 DGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       185 DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++++|||+||  |+|+|++|+|+|++++|+||++||++|.
T Consensus        34 ~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRR   71 (123)
T 3lhp_S           34 FKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGR   71 (123)
T ss_dssp             HHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            4568999999  9999999999999999999999999874

>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}

Probab=87.60  E-value=3.3  Score=33.31  Aligned_cols=93  Identities=22%  Similarity=0.407  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHHHhC--
Q 027212           99 DVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSS--  176 (226)
Q Consensus        99 ~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI~~S--  176 (226)
                      +++.++.+--++|+.+|+              |.|.|.           |- .++.-+.+-.|.-+.+.+.+||+..-  
T Consensus        53 qvrkelakeaerl~~efn--------------i~v~y~-----------im-gsgsgvm~i~f~gddlea~ekalkemir  106 (170)
T 4hhu_A           53 QVRKELAKEAERLKAEFN--------------INVQYQ-----------IM-GSGSGVMVIVFEGDDLEALEKALKEMIR  106 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHT--------------CEEEEE-----------EE-CTTCCEEEEEEECSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcc--------------eEEEEE-----------EE-eCCceEEEEEEecCcHHHHHHHHHHHHH
Confidence            455667777788888884              566652           21 22334566678888899999988651  


Q ss_pred             ---CC--CCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 027212          177 ---DL--GMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKV  217 (226)
Q Consensus       177 ---nL--glnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv  217 (226)
                         .+  .++-..||+.+-|.|--+.+..|++|+|.|..+..+.-+
T Consensus       107 qarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni  152 (170)
T 4hhu_A          107 QARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI  152 (170)
T ss_dssp             HHHHTTCEEEEEECSSEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence               22  223346999999999999999999999999988776644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1wqga1	183	d.67.3.1 (A:2-184) Ribosome recycling factor, RRF	6e-34
d1eh1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-32
d1is1a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibr	8e-31
d1wiha_	84	d.67.3.1 (A:) Ribosome recycling factor, RRF {Mous	1e-30
d1ek8a_	185	d.67.3.1 (A:) Ribosome recycling factor, RRF {Esch	8e-30
d1dd5a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Ther	2e-29
d1ge9a_	184	d.67.3.1 (A:) Ribosome recycling factor, RRF {Aqui	2e-29

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  118 bits (296), Expect = 6e-34
 Identities = 51/124 (41%), Positives = 84/124 (67%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
              D + +ME+ + + R + +++RTGR+NP M  +I ++YYG+   +  +A IN P++  
Sbjct: 4   ALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARL 63

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE 
Sbjct: 64  VVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEA 123

Query: 216 KVVM 219
           KV +
Sbjct: 124 KVSV 127

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

 Score =  114 bits (286), Expect = 2e-32
 Identities = 52/124 (41%), Positives = 89/124 (71%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           +  + ++ M+++++++  N   +RTGR+NPA+L  ++VEYYG+ V L  IA +  PD  +
Sbjct: 6   LYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRT 65

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L++Q +D+++LK+IEKAI  SDLG+ P+N G+ + + +P LT ERRK+L + V + AEEG
Sbjct: 66  LVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEG 125

Query: 216 KVVM 219
           +V +
Sbjct: 126 RVAI 129

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

 Score =  110 bits (275), Expect = 8e-31
 Identities = 53/124 (42%), Positives = 85/124 (68%)

Query: 96  IEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSS 155
           I+KD + RM+++++ ++ N + VRTGR++P++L  I VEYYG+   L  +A +   D+ +
Sbjct: 5   IKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDART 64

Query: 156 LLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEG 215
           L I  +DK   + +EKAI+ SDLG+ P + G +IR+ LP LT ERRK+L K+V  +AE G
Sbjct: 65  LAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGG 124

Query: 216 KVVM 219
           +V +
Sbjct: 125 RVAV 128

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]} Length = 84

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

 Score =  106 bits (265), Expect = 1e-30
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLG 179
           G S  + LD I V      V+L  I QI+      +L+          +  KAI  S + 
Sbjct: 1   GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60

Query: 180 MTPNNDGEVIRLTLPQLTSERRK 202
           + P  +G +IR+ +P++TS    
Sbjct: 61  LNPEVEGTLIRVPIPKVTSGPSS 83

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]} Length = 185

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (268), Expect = 8e-30
 Identities = 56/126 (44%), Positives = 89/126 (70%)

Query: 94  SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDS 153
           S I KD + RM++ ++  +T  + +RTGR++P++LD I VEYYG+P  L+ +A +   DS
Sbjct: 3   SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDS 62

Query: 154 SSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAE 213
            +L I  +D+S   ++EKAI++SDLG+ PN+ G  IR+ LP LT ERRK+L+K+V  +AE
Sbjct: 63  RTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAE 122

Query: 214 EGKVVM 219
           + +V +
Sbjct: 123 QARVAV 128

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

 Score =  106 bits (266), Expect = 2e-29
 Identities = 52/125 (41%), Positives = 83/125 (66%)

Query: 95  SIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSS 154
              K+ K +M+RT++ +      +RTG+ +PA+L++I+V+YYG P  +  +A I+  +  
Sbjct: 3   PFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEER 62

Query: 155 SLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEE 214
           +L+I+P+DKS L  IEKAI +SDLG+ P NDG VIRL  P  T+E+R++  K   +  EE
Sbjct: 63  TLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEE 122

Query: 215 GKVVM 219
           GK+ +
Sbjct: 123 GKIAI 127

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]} Length = 184

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

 Score =  106 bits (266), Expect = 2e-29
 Identities = 49/134 (36%), Positives = 88/134 (65%), Gaps = 5/134 (3%)

Query: 86  IEEIEAEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSI 145
           I+E+E     I K+ +  M++ ++  +     +RT R++ A++++I+VEYYGS V +K +
Sbjct: 2   IKELE----DIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQL 57

Query: 146 AQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELS 205
             I+ P+ + ++IQ +D++++ +IEKAI   +L + P   G VIR+TLP LT ERR+EL 
Sbjct: 58  GTISVPEHNQIVIQVWDQNAVPAIEKAIR-EELNLNPTVQGNVIRVTLPPLTEERRRELV 116

Query: 206 KVVAKQAEEGKVVM 219
           +++ K  EE +V +
Sbjct: 117 RLLHKITEEARVRV 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1wqga1	183	Ribosome recycling factor, RRF {Mycobacterium tube	100.0
d1is1a_	185	Ribosome recycling factor, RRF {Vibrio parahaemoly	100.0
d1dd5a_	184	Ribosome recycling factor, RRF {Thermotoga maritim	100.0
d1ek8a_	185	Ribosome recycling factor, RRF {Escherichia coli [	100.0
d1eh1a_	185	Ribosome recycling factor, RRF {Thermus thermophil	100.0
d1ge9a_	184	Ribosome recycling factor, RRF {Aquifex aeolicus [	100.0
d1wiha_	84	Ribosome recycling factor, RRF {Mouse (Mus musculu	99.96

>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.9e-45  Score=309.15  Aligned_cols=131  Identities=39%  Similarity=0.741  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++++++|++||
T Consensus         2 ~~~l~~~~~kM~kai~~l~~el~~irtGRasp~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI   81 (183)
T d1wqga1           2 DEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAI   81 (183)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHhhhccCcceEEEeecchhhHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++|||||||++||+.|+|+||+||+|+|++|+|.||+.+|+||++||++|.
T Consensus        82 ~~s~lglnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR~  132 (183)
T d1wqga1          82 RNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRR  132 (183)
T ss_dssp             HHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCcCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974

>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=100.00  E-value=3.1e-45  Score=309.41  Aligned_cols=132  Identities=40%  Similarity=0.716  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHH
Q 027212           93 KSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKA  172 (226)
Q Consensus        93 ~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekA  172 (226)
                      ++.++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++.+++|++|
T Consensus         2 ~~~i~~~~~~kM~kai~~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekA   81 (185)
T d1is1a_           2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKA   81 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHhCCeEEEECCCCccHHHHhhhccCCCceEEEEecccchHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          173 IVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       173 I~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      |++||||+||++||+.|||+||+||+|+|++++|.||+.+|+||++||++|.
T Consensus        82 I~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~akv~iRniRr  133 (185)
T d1is1a_          82 IMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRR  133 (185)
T ss_dssp             HHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccccccccCCceeeecCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999874

>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.9e-45  Score=307.47  Aligned_cols=131  Identities=40%  Similarity=0.712  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      +.++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++|+++|+|+|||++++++|++||
T Consensus         2 ~~~~~~~~~kM~~ai~~l~~el~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~I~kAI   81 (184)
T d1dd5a_           2 NPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKAI   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHCceEEeeCCCcccHHHHhhhccCCcceeEeeccchhhHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++||||+||++||+.|+|+||+||+|+|++++|.||+.+|+||++||++|.
T Consensus        82 ~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR~  132 (184)
T d1dd5a_          82 NASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRR  132 (184)
T ss_dssp             HHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCCccCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999874

>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-44  Score=305.93  Aligned_cols=131  Identities=43%  Similarity=0.750  Sum_probs=128.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHHHH
Q 027212           94 SSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAI  173 (226)
Q Consensus        94 d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~IekAI  173 (226)
                      ++++++++++|++++++|+++|+++|+||+||++||+|+|+|||.++||++||+|+++|+++|+|+|||++.+++|++||
T Consensus         3 ~~i~~~~~~kM~k~ie~l~~el~~irtGRa~p~lld~I~V~~yg~~~pL~~lA~Is~~~~~~l~I~p~D~~~v~~IekAI   82 (185)
T d1ek8a_           3 SDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAI   82 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCTTTTTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCeeEEeeCCCcccHHHHhhhccCcchheeeeechHhhHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          174 VSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       174 ~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ++||||+||++||+.|||+||+||+|+|++|+|.||+++|+||++||++|.
T Consensus        83 ~~s~lgl~p~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~~kv~iR~iRr  133 (185)
T d1ek8a_          83 MASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVRR  133 (185)
T ss_dssp             HHTCSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCccccceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999974

>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.1e-44  Score=304.24  Aligned_cols=133  Identities=39%  Similarity=0.737  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHHH
Q 027212           92 EKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEK  171 (226)
Q Consensus        92 e~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~Iek  171 (226)
                      +++.++.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||||+++++++|+|+|||++++++|++
T Consensus         2 ~~~~~~~~~~~~M~k~i~~l~~~l~~irtGra~p~lld~i~V~~~g~~~pL~~lA~Isv~~~~~l~I~~~D~~~v~~I~k   81 (185)
T d1eh1a_           2 TLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEK   81 (185)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHcCCeEEeeCCCcccHHHHhhhccCCcceEEeeccchHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          172 AIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       172 AI~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      ||++||||+||++||+.|+|+||+||+|+|++++|.||+.+|+||++||++|.
T Consensus        82 AI~~s~l~l~p~~dg~~Irv~iP~lT~E~R~elvK~~k~~~E~akv~iR~iR~  134 (185)
T d1eh1a_          82 AIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRR  134 (185)
T ss_dssp             HHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcccccccCccceeccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999874

>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=5.2e-44  Score=301.65  Aligned_cols=133  Identities=35%  Similarity=0.642  Sum_probs=129.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecCcccHHHHH
Q 027212           91 AEKSSIEKDVKARMERTIDMVRTNFNSVRTGRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIE  170 (226)
Q Consensus        91 ~e~d~il~~~~~kM~kaie~lk~el~kiRtGRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD~s~ik~Ie  170 (226)
                      +|+++++++++++|++++++|+++|+++|+||+||++||+|+|+|||+++||++||+|+++++++|+|+|||++.+++|+
T Consensus         3 ~~~~~i~~~~~~~m~k~i~~l~~el~~irtGRasp~lld~i~V~~yg~~~pL~~lA~Is~~~~~~l~i~~~D~~~v~~Ie   82 (184)
T d1ge9a_           3 KELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIE   82 (184)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEeeCCCcccHHHHHHhhcCCcceeeeecccHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCccCCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 027212          171 KAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVVMLLLFT  224 (226)
Q Consensus       171 kAI~~SnLglnPq~DG~~IrV~IP~lT~E~RkeLvK~aKk~~E~aKv~IR~~~~  224 (226)
                      +|| .|+||+||+.||+.|||+||+||+|+|++|+|.||+.+|+||++||++|.
T Consensus        83 kAI-~s~lglnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~  135 (184)
T d1ge9a_          83 KAI-REELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRR  135 (184)
T ss_dssp             HHH-HHHHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-hccCCCCCCCCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999 56999999999999999999999999999999999999999999999874

>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: RRF/tRNA synthetase additional domain-like
superfamily: Ribosome recycling factor, RRF
family: Ribosome recycling factor, RRF
domain: Ribosome recycling factor, RRF
species: Mouse (Mus musculus), mitochondrial [TaxId: 10090]

Probab=99.96  E-value=9.3e-32  Score=201.53  Aligned_cols=82  Identities=28%  Similarity=0.413  Sum_probs=80.3

Q ss_pred             CCCCcCCCceeEEEECCccccccceEEEecCCCcEEEEeecC-cccHHHHHHHHHhCCCCCCccCCCCeEEEeCCCCCHH
Q 027212          121 GRSNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYD-KSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSE  199 (226)
Q Consensus       121 GRa~P~lLd~I~Ve~yG~~~pL~~LAqIsvkd~rtLvI~pyD-~s~ik~IekAI~~SnLglnPq~DG~~IrV~IP~lT~E  199 (226)
                      |||||+|||+|+|+|||.++||+|||+|+++++++|+|+||| ++.+++|+|||++|||||||++||+.|||+||+||.|
T Consensus         1 Gra~p~lld~I~V~~yg~~~pL~qlA~Isv~~~~~l~I~~~D~~~~~~~i~kAI~~S~LglnP~~dG~~Iri~iP~lT~~   80 (84)
T d1wiha_           1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG   80 (84)
T ss_dssp             CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred             CCCChHHcCceEEEECCCcccHHHHhhhhcCCCceEEEEEeecccccHHHHHHHHhcCCCCCcccCCCEEEEECCCCCCC
Confidence            899999999999999999999999999999999999999999 8999999999999999999999999999999999998


Q ss_pred             HHH
Q 027212          200 RRK  202 (226)
Q Consensus       200 ~Rk  202 (226)
                      .|+
T Consensus        81 ~~~   83 (84)
T d1wiha_          81 PSS   83 (84)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            774