Citrus Sinensis ID: 027260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Secondary Structure (PSIPRED)
ccccccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccHHHHcccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccc
Coil and Loop (DISEMBL)
masssnnngdilmleappdaarpwnaeiidalpyidddyadprvKEEVDRMVEQEMrrsskkpsdflknlpplskfrfenhpmLAKEYErvragkppavldTTRYQLEilpankrndESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Flexible Loop (DISEMBL)
masssnnngdILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQemrrsskkpsdflknlpplskfrfeNHPMLAKEyervragkppavLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Low Complexity Region (SEG)
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Disordered region (IsUnstruct)
*********************RPWNAEIIDALPYIDDDYA**********************************************************VLDTTRYQLEIL***************************************************QNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDID*************
Disordered Region (DISOPRED)
***********************WNAEIIDALPYIDDDYADPRVKEEVDRMV******************PPLSKFRFENHPMLAK*************************************ALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKY*******ELNALSTQWRELCAKNIEIQAACANIES********************************
Disordered Region (DISEMBL)
********GDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVD**************SDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRN*****************HQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH
Disordered Region (DISPRO)
********GDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAES*WN*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQxxxxxxxxxxxxxxxxxxxxxxxxxxxxTAYELNALSTQWRELCAKxxxxxxxxxxxxxxxxxxxxxAAESGWNLDIDMEKGFLAQSGQVH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q949S9	253	Pre-mRNA-splicing factor	yes	no	0.933	0.833	0.618	9e-81
Q6PBE2	223	Pre-mRNA-splicing factor	yes	no	0.805	0.816	0.264	7e-12
Q54SG7	226	Pre-mRNA-splicing factor	yes	no	0.747	0.747	0.267	3e-11
Q5RAX7	226	Pre-mRNA-splicing factor	yes	no	0.774	0.774	0.271	4e-11
Q9D287	225	Pre-mRNA-splicing factor	yes	no	0.774	0.777	0.263	4e-11
O75934	225	Pre-mRNA-splicing factor	yes	no	0.774	0.777	0.263	4e-11
Q5RKQ0	225	Pre-mRNA-splicing factor	yes	no	0.778	0.782	0.252	2e-10

>sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana GN=MOS4 PE=1 SV=1

 Score =  299 bits (766), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 182/244 (74%), Gaps = 33/244 (13%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct: 62  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query: 120 AWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEKIE 151
           AWKQ LQK QR  Q +LI                            RMQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181

Query: 152 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 211
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241

Query: 212 IDME 215
             +E
Sbjct: 242 EKLE 245

Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Involved in mRNA splicing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 30/212 (14%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
           ++DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   M   E
Sbjct: 12  VVDALPYFDQGYDAQGVREAAAALVEEETRRY-RPTKNYLSYLPTPDYSAFETEIM-RNE 69

Query: 88  YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL----- 142
           +ER+ + +P  +L   RY+L    + +RND +AW++ +  +    +HQ +R++ L     
Sbjct: 70  FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query: 143 -----------------------AQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 179
                                   Q+  +KI+ +N +RK  Q      L  + + W  L 
Sbjct: 130 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 189

Query: 180 AKNIEIQAACANIESHIEELRKEAAESGWNLD 211
           +KN EI+ A   +E+ + +L++ + E+  N++
Sbjct: 190 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221

Involved in mRNA splicing.

Xenopus tropicalis (taxid: 8364)

>sp|Q54SG7|SPF27_DICDI Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27 PE=3 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 33/202 (16%)

Query: 26  AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLA 85
           AE ID+LPY+DD   +   +E +++++  EM  S+  P D+L  LP      + N   L 
Sbjct: 8   AENIDSLPYVDDS-VNENEQELINKLISDEM--STFTPPDYLAQLPSFIDIDYNNFQFLE 64

Query: 86  KEYERVRAGKPPAVLDTTRYQLE--ILPANKRNDESAWKQALQKAQRLSQHQLIR----- 138
            +++R+   +     D  RY++E       ++ +E  W  +L  A+   +HQ IR     
Sbjct: 65  NDFKRMEKEEKMKEFDIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLE 124

Query: 139 -MQRLA----------------------QEQNEKIEAVNRERKYHQQNTAYELNALSTQW 175
            +QR                         ++ ++IE +N +RK  Q+ T  ++     ++
Sbjct: 125 LLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKF 184

Query: 176 RELCAKNIEIQAACANIESHIE 197
            EL  KN EI++AC +IE  IE
Sbjct: 185 LELVYKNTEIESACKSIELEIE 206

Involved in mRNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 35/210 (16%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRMQRL-- 142
            E+ER+ A +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R++ L  
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLEL 127

Query: 143 ----------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWR 176
                                 AQ++ +K    I+ +N +RK  Q     +L  + + W 
Sbjct: 128 MSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWV 187

Query: 177 ELCAKNIEIQAACANIESHIEELRKEAAES 206
            L +KN EI+     +E+ I +++++  E+
Sbjct: 188 SLVSKNYEIERTIVQLENEIYQIKQQHGEA 217

Involved in mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 34/209 (16%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL--- 142
            E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L   
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127

Query: 143 ---------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWRE 177
                                AQ++ +K    I+ +N +RK  Q     +L  + + W  
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187

Query: 178 LCAKNIEIQAACANIESHIEELRKEAAES 206
           L +KN EI+     +E+ I +++++  E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216

Involved in mRNA splicing.

Mus musculus (taxid: 10090)

>sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 34/209 (16%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
           ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L  P  S F  +   ++ 
Sbjct: 12  VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL--- 142
            E+ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L   
Sbjct: 68  NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127

Query: 143 ---------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWRE 177
                                AQ++ +K    I+ +N +RK  Q     +L  + + W  
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187

Query: 178 LCAKNIEIQAACANIESHIEELRKEAAES 206
           L +KN EI+     +E+ I +++++  E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216

Involved in mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 30/206 (14%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
            +DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   ++  E
Sbjct: 12  FVDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNE 69

Query: 88  YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL----- 142
           +ER+ A +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R++ L     
Sbjct: 70  FERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQ 129

Query: 143 -----------------------AQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 179
                                   Q   ++I+ +N +RK  Q     +L  L + W  L 
Sbjct: 130 YGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLV 189

Query: 180 AKNIEIQAACANIESHIEELRKEAAE 205
           +KN EI+ A   +E+ + +++++  +
Sbjct: 190 SKNYEIERAIVQLENEVAQMKQQQGD 215

Involved in mRNA splicing.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
225456087	256	PREDICTED: pre-mRNA-splicing factor SPF2	0.955	0.843	0.674	1e-87
224135477	255	predicted protein [Populus trichocarpa]	0.982	0.870	0.639	3e-86
449439443	256	PREDICTED: pre-mRNA-splicing factor SPF2	0.964	0.851	0.625	5e-85
388501430	248	unknown [Lotus japonicus]	0.946	0.862	0.632	3e-80
357521555	261	Pre-mRNA-splicing factor SPF27-like prot	0.946	0.819	0.618	2e-79
18401792	253	Pre-mRNA-splicing factor SPF27-like prot	0.933	0.833	0.618	5e-79
255577366	237	Breast carcinoma amplified sequence, put	0.898	0.856	0.644	8e-79
297830464	253	hypothetical protein ARALYDRAFT_479309 [	0.933	0.833	0.610	1e-77
9294072	286	unnamed protein product [Arabidopsis tha	0.933	0.737	0.545	3e-74
357130203	257	PREDICTED: pre-mRNA-splicing factor SPF2	0.946	0.832	0.528	7e-66

>gi|225456087|ref|XP_002281066.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Vitis vinifera]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/246 (67%), Positives = 186/246 (75%), Gaps = 30/246 (12%)

Query: 7   NNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDF 66
           N+GDILMLEAPP A+RP  AE IDALPYIDDDY  P+VKEEVDR+VE EMRRSSKKPSDF
Sbjct: 3   NDGDILMLEAPPQASRP--AEFIDALPYIDDDYGHPKVKEEVDRLVEDEMRRSSKKPSDF 60

Query: 67  LKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQ 126
           LK+LPPL  F F NHPMLA+EYERVRAGKPP  LD +RY LE+ P NKRNDE+AWK ALQ
Sbjct: 61  LKDLPPLPPFGFHNHPMLAREYERVRAGKPPVALDMSRYGLEMPPMNKRNDETAWKHALQ 120

Query: 127 KAQRLSQHQLI----------------------------RMQRLAQEQNEKIEAVNRERK 158
           KAQRL QHQ+I                            RMQ LA EQNEKIE VNRERK
Sbjct: 121 KAQRLLQHQVIRLENLELMSKHGADVWKQHNQRLEAYLSRMQALAMEQNEKIETVNRERK 180

Query: 159 YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGF 218
           YHQQNTA+ELNALS QW+ELC KNIEI+ ACA IE++IEELR+EAAE GWNLD +++ G 
Sbjct: 181 YHQQNTAFELNALSAQWKELCEKNIEIRTACAKIENNIEELRREAAERGWNLDANIDNGS 240

Query: 219 LAQSGQ 224
           L+ S Q
Sbjct: 241 LSHSEQ 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135477|ref|XP_002322083.1| predicted protein [Populus trichocarpa] gi|222869079|gb|EEF06210.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 163/255 (63%), Positives = 194/255 (76%), Gaps = 33/255 (12%)

Query: 1   MASSSNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEM 56
           MA+S++ NGD+LMLEA P+A+RPW    NAEIIDALPYIDDDY +P VK EVDR+VE+EM
Sbjct: 1   MATSNSANGDMLMLEAAPEASRPWSTSSNAEIIDALPYIDDDYGNPSVKAEVDRLVEEEM 60

Query: 57  RRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY-QLEILPANKR 115
           RRSSKKPSDFLK LPP+ KF FEN+PMLAKEYERVRAG+PP  LD +RY  L++  ANK 
Sbjct: 61  RRSSKKPSDFLKELPPVPKFTFENYPMLAKEYERVRAGRPPVTLDFSRYSHLDLPAANKM 120

Query: 116 NDESAWKQALQKAQRLSQHQLIRM----------------------------QRLAQEQN 147
           NDE+AWKQALQ+AQRL QHQ+IR+                            Q+LA+EQN
Sbjct: 121 NDETAWKQALQRAQRLLQHQVIRLENLELMSKYGPEVWIQHNRQLETMLTRTQKLAREQN 180

Query: 148 EKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 207
           EKIEAVNRERKYHQQNTAYELNALS QW+ELC KNIEIQ AC  IE+ IEEL++E++E G
Sbjct: 181 EKIEAVNRERKYHQQNTAYELNALSAQWKELCQKNIEIQEACIKIENQIEELKRESSERG 240

Query: 208 WNLDIDMEKGFLAQS 222
           WN++ ++E G L  S
Sbjct: 241 WNVEANIENGSLLHS 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439443|ref|XP_004137495.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] gi|449503115|ref|XP_004161841.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus]

 Score =  319 bits (818), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/251 (62%), Positives = 193/251 (76%), Gaps = 33/251 (13%)

Query: 3   SSSNNNGDILMLEAPPDAARP-W----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMR 57
           +++NNNGDILMLEAPP  ++P W    +AE+IDALPYIDDDYADPRVK EVDR+VE+EMR
Sbjct: 2   AANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMR 61

Query: 58  RSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRND 117
           RSSK+P+DFLK+LPPL KF+FE+HPMLA+EYERVRAG+PP  LD  RY+LE  P NK+ND
Sbjct: 62  RSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKND 121

Query: 118 ESAWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEK 149
           E+AWKQ LQKAQ L +HQ++                            RMQ+LAQEQNEK
Sbjct: 122 ETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEK 181

Query: 150 IEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN 209
           IE VNRERK+HQQN AYEL+ALSTQW+ELC KN+EIQ AC  +E  I+ELR+EAAE GWN
Sbjct: 182 IEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGWN 241

Query: 210 LDIDMEKGFLA 220
           L++++E G ++
Sbjct: 242 LEVNVENGSVS 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501430|gb|AFK38781.1| unknown [Lotus japonicus]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/245 (63%), Positives = 179/245 (73%), Gaps = 31/245 (12%)

Query: 9   GDILMLEAPPDAA---RPWNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSD 65
           G++LMLEAPP      R  +AEIIDALPYIDDDY DPRVK EVDR+VE EMRRSSKKP+D
Sbjct: 2   GEVLMLEAPPSYGGLPRSSDAEIIDALPYIDDDYGDPRVKVEVDRLVEDEMRRSSKKPAD 61

Query: 66  FLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQAL 125
           FLK+ PPL     E +PM+A+EYERVRAG+PP  +D +RY+LEI P NKRNDE+AWK AL
Sbjct: 62  FLKDFPPLPTSNLEGYPMIAREYERVRAGRPPVSIDRSRYELEIPPLNKRNDETAWKHAL 121

Query: 126 QKAQRLSQHQ----------------------------LIRMQRLAQEQNEKIEAVNRER 157
           Q+AQRL Q+Q                            L+RMQ+LAQEQNEKIE VNRER
Sbjct: 122 QRAQRLLQYQMMRMENIELLLKYGPDAWKQHNHRLEVYLLRMQKLAQEQNEKIEKVNRER 181

Query: 158 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKG 217
           KYHQQNTAYELNALSTQW ELC KNI+I AACA++E+ I EL++EAAE GWNLD   E G
Sbjct: 182 KYHQQNTAYELNALSTQWNELCQKNIDINAACASVETRINELKREAAERGWNLDAISENG 241

Query: 218 FLAQS 222
            LA S
Sbjct: 242 QLANS 246

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521555|ref|XP_003631066.1| Pre-mRNA-splicing factor SPF27-like protein [Medicago truncatula] gi|355525088|gb|AET05542.1| Pre-mRNA-splicing factor SPF27-like protein [Medicago truncatula] gi|388502546|gb|AFK39339.1| unknown [Medicago truncatula]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 178/244 (72%), Gaps = 30/244 (12%)

Query: 9   GDILMLEAPPDAARPW--NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDF 66
           GD+LMLEAPP   R    +AEIIDALPYIDDDY+DPRVK EVDR+VE+EMRRSSKKP+DF
Sbjct: 16  GDVLMLEAPPSYGRSSHSDAEIIDALPYIDDDYSDPRVKIEVDRLVEEEMRRSSKKPADF 75

Query: 67  LKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQ 126
           LK+ PPL    F ++PM+ +EYERVRAG+PP  LD +RY+LE  P NKRNDE+AWK A+Q
Sbjct: 76  LKDFPPLPSSNFHDYPMIGREYERVRAGRPPVSLDRSRYELEAPPVNKRNDETAWKLAIQ 135

Query: 127 KAQRLSQHQLI----------------------------RMQRLAQEQNEKIEAVNRERK 158
           +AQRL Q+Q I                            RMQ+LAQEQN+KIE VNRERK
Sbjct: 136 RAQRLLQYQTIRMENLDLLFKHGPDAWKQHNQRLEVYLSRMQKLAQEQNDKIEKVNRERK 195

Query: 159 YHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGF 218
           YHQQNTAYELNALS QW ELC KNI+I+  CA++E+H+ ELR+EAAE GWNLD   E G 
Sbjct: 196 YHQQNTAYELNALSMQWNELCQKNIDIKVVCASVETHLNELRREAAERGWNLDAITENGQ 255

Query: 219 LAQS 222
           LA S
Sbjct: 256 LANS 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18401792|ref|NP_566599.1| Pre-mRNA-splicing factor SPF27-like protein [Arabidopsis thaliana] gi|75164860|sp|Q949S9.1|SPF27_ARATH RecName: Full=Pre-mRNA-splicing factor SPF27 homolog; AltName: Full=Modifier of SNC1 member 4; AltName: Full=Protein BCAS2 homolog gi|15292953|gb|AAK93587.1| unknown protein [Arabidopsis thaliana] gi|20259667|gb|AAM14351.1| unknown protein [Arabidopsis thaliana] gi|21593691|gb|AAM65658.1| unknown [Arabidopsis thaliana] gi|152014429|gb|ABS20115.1| modifier of SNC1 [Arabidopsis thaliana] gi|332642537|gb|AEE76058.1| Pre-mRNA-splicing factor SPF27-like protein [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 151/244 (61%), Positives = 182/244 (74%), Gaps = 33/244 (13%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct: 62  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query: 120 AWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEKIE 151
           AWKQ LQK QR  Q +LI                            RMQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181

Query: 152 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 211
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241

Query: 212 IDME 215
             +E
Sbjct: 242 EKLE 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577366|ref|XP_002529563.1| Breast carcinoma amplified sequence, putative [Ricinus communis] gi|223530975|gb|EEF32832.1| Breast carcinoma amplified sequence, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 152/236 (64%), Positives = 175/236 (74%), Gaps = 33/236 (13%)

Query: 3   SSSNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRR 58
           ++   NG+ILMLEA P+A++ W    NAEI+DALPYIDD+Y +P +K EVDR+VE+EMRR
Sbjct: 2   AALTGNGEILMLEAAPEASKKWTHSTNAEIVDALPYIDDEYGNPSIKAEVDRLVEEEMRR 61

Query: 59  SSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY-QLEILPANKRND 117
           S KKPSDFLK+LPPL  F FEN+PML KEYERVRAGKPP  LD +RY  L++  ANK ND
Sbjct: 62  SHKKPSDFLKDLPPLPTFTFENYPMLGKEYERVRAGKPPVTLDFSRYSHLDLPSANKMND 121

Query: 118 ESAWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEK 149
           E+AWKQALQ+ QRL QHQ+I                            RMQ+LAQEQNEK
Sbjct: 122 ETAWKQALQRGQRLLQHQVIRLENLELMSKYGPDVWIQHNRTLEAMLSRMQKLAQEQNEK 181

Query: 150 IEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 205
           IEAVNRERKYHQQNTAYELNALS QW+ELC KNIEIQAAC  IE  IEEL+KEAAE
Sbjct: 182 IEAVNRERKYHQQNTAYELNALSMQWKELCLKNIEIQAACTKIEMQIEELKKEAAE 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830464|ref|XP_002883114.1| hypothetical protein ARALYDRAFT_479309 [Arabidopsis lyrata subsp. lyrata] gi|297328954|gb|EFH59373.1| hypothetical protein ARALYDRAFT_479309 [Arabidopsis lyrata subsp. lyrata]

 Score =  295 bits (754), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/244 (61%), Positives = 180/244 (73%), Gaps = 33/244 (13%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEAAPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
           KKP+DFLK+LPPL KF FEN P+L KEYERVRAGKPP  +D  +RY+LE+ PANK ND +
Sbjct: 62  KKPADFLKDLPPLPKFDFENCPVLGKEYERVRAGKPPVRIDFESRYKLELPPANKSNDAA 121

Query: 120 AWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEKIE 151
           AWKQ LQK QR  Q +LI                            RMQRLAQEQN++IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNKEIE 181

Query: 152 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 211
            VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ ++  +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQMDSFKKEAAERGWNLE 241

Query: 212 IDME 215
             +E
Sbjct: 242 EKLE 245

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294072|dbj|BAB02029.1| unnamed protein product [Arabidopsis thaliana]

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 151/277 (54%), Positives = 182/277 (65%), Gaps = 66/277 (23%)

Query: 5   SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
           + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2   ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query: 61  KKPSDFLKNLPPLSKFRFE---------------------------------NHPMLAKE 87
           KKP+DFLK+LPPL KF F+                                 N P+L KE
Sbjct: 62  KKPADFLKDLPPLPKFDFKLGFGNFVGLGFKGNLVNSNLLVSGFYFILDFIGNCPVLGKE 121

Query: 88  YERVRAGKPPAVLDT-TRYQLEILPANKRNDESAWKQALQKAQRLSQHQLI--------- 137
           YERVRAGKPP  +D  +RY+LE+ PANKRND++AWKQ LQK QR  Q +LI         
Sbjct: 122 YERVRAGKPPVRIDFESRYKLEMPPANKRNDDAAWKQYLQKNQRSLQQKLIELENLELMS 181

Query: 138 -------------------RMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWREL 178
                              RMQRLAQEQNE+IE VNRERKYHQQ T+YELNALS +WR+L
Sbjct: 182 KLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIEKVNRERKYHQQTTSYELNALSQEWRQL 241

Query: 179 CAKNIEIQAACANIESHIEELRKEAAESGWNLDIDME 215
           C KN+EIQ+ACA +E+ I+  +KEAAE GWNL+  +E
Sbjct: 242 CVKNMEIQSACAMLETQIDSFKKEAAERGWNLEEKLE 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357130203|ref|XP_003566740.1| PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Brachypodium distachyon]

 Score =  256 bits (653), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 131/248 (52%), Positives = 169/248 (68%), Gaps = 34/248 (13%)

Query: 10  DILMLEAPPD--AARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKP 63
           ++LMLEAPP   A  PW    +AE++DALPYID DY DP VK EVDR+VE+EMRR+ +KP
Sbjct: 8   EVLMLEAPPAEAAGVPWRSPPDAEVVDALPYIDGDYGDPSVKREVDRLVEEEMRRAHRKP 67

Query: 64  SDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQ 123
           +DFL++LPP+  F FEN+PMLAKEY+RVRAGKPPA ++ +RY LE  PANKRND +AW+Q
Sbjct: 68  ADFLRDLPPVPAFGFENNPMLAKEYDRVRAGKPPATIEMSRYGLEPPPANKRNDVAAWRQ 127

Query: 124 ALQKAQRLSQHQLI----------------------------RMQRLAQEQNEKIEAVNR 155
           AL+ AQ   QHQ+I                            RMQ++A E NEKIE VNR
Sbjct: 128 ALRNAQSQLQHQIIRIENLELMLKHGVEVWKLQNRKMESILSRMQKMAVEYNEKIEIVNR 187

Query: 156 ERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDME 215
           ERK+HQQNT  +L+AL+ +W+ELC KNI IQAAC ++++ I++L+ EA E G  +D   E
Sbjct: 188 ERKFHQQNTGGQLHALTIEWQELCQKNIAIQAACVDLQNQIDQLKLEAKEQGMPMDDSTE 247

Query: 216 KGFLAQSG 223
               A  G
Sbjct: 248 NNPQASVG 255

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:505006356	253	MOS4 "Modifier of snc1,4" [Ara	0.610	0.545	0.678	1.8e-48
FB|FBgn0039558	278	CG4980 [Drosophila melanogaste	0.774	0.629	0.320	6e-16
ZFIN|ZDB-GENE-030408-5	259	bcas2 "breast carcinoma amplif	0.495	0.432	0.315	4.5e-15
UNIPROTKB|E1BTS4	225	BCAS2 "Uncharacterized protein	0.699	0.702	0.296	2.3e-14
UNIPROTKB|Q5RAX7	226	BCAS2 "Pre-mRNA-splicing facto	0.699	0.699	0.295	6.2e-14
UNIPROTKB|Q5E9D4	225	BCAS2 "Breast carcinoma amplif	0.699	0.702	0.284	1.3e-13
UNIPROTKB|E2RL57	225	BCAS2 "Uncharacterized protein	0.699	0.702	0.284	1.3e-13
UNIPROTKB|O75934	225	BCAS2 "Pre-mRNA-splicing facto	0.699	0.702	0.284	1.3e-13
UNIPROTKB|I6L631	225	BCAS2 "Uncharacterized protein	0.699	0.702	0.284	1.3e-13
MGI|MGI:1915433	225	Bcas2 "breast carcinoma amplif	0.699	0.702	0.284	1.3e-13

TAIR|locus:505006356 MOS4 "Modifier of snc1,4" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 97/143 (67%), Positives = 118/143 (82%)

Query:     5 SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
             + NNGD+LMLEA P+AARPW    NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct:     2 ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61

Query:    61 KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLD-TTRYQLEILPANKRNDES 119
             KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP  +D  +RY+LE+ PANKRND++
Sbjct:    62 KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121

Query:   120 AWKQALQKAQRLSQHQLIRMQRL 142
             AWKQ LQK QR  Q +LI ++ L
Sbjct:   122 AWKQYLQKNQRSLQQKLIELENL 144

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IMP

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0001510 "RNA methylation" evidence=RCA

FB|FBgn0039558 CG4980 [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 59/184 (32%), Positives = 95/184 (51%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             I+DALPYID  Y D  V+E    MVE+E RR  +   ++L +LP  +   FE  P++A E
Sbjct:     6 IVDALPYIDHGYDDVGVRESALAMVEEECRRY-RPTKNYLDHLPLPASSPFET-PLMANE 63

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER++   P   L   RY+L   P+ K ++ SAW++A++ +    +HQ +R   L    +
Sbjct:    64 FERIQNRLPMETLSMKRYELPPPPSGKLSEVSAWQEAIENSMAQLEHQWVRSLNLELMLD 123

Query:   148 EKIEAVNRERKYHQQNTAYELNA-LSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 206
                EA    + Y +  TA +  A L  Q  +   +++  Q   A  ++  E LR  + E+
Sbjct:   124 YGTEAW---KSYLEVFTAMQAKAQLQLQQLKKDIQDVNWQRKQAQTQAG-ERLR--SLEA 177

Query:   207 GWNL 210
              W L
Sbjct:   178 HWVL 181

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

ZFIN|ZDB-GENE-030408-5 bcas2 "breast carcinoma amplified sequence 2" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 36/114 (31%), Positives = 61/114 (53%)

Query:    29 IDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEY 88
             +DALPY D  Y    V+E    +VE+E RR  +   ++L  LP      FE   ++  E+
Sbjct:    47 VDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNEF 104

Query:    89 ERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL 142
             ER+ A +P  +L   RY+L    + ++ND +AW+  +  +    +HQ +R++ L
Sbjct:   105 ERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENL 158

GO:0006397 "mRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|E1BTS4 BCAS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 49/165 (29%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  LP      FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLPAHDCSAFETE-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPLELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQQNTAY-ELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H    A  EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNEHLVHMIEQAQKELQKLRKSIQDLNWQRKNMQLTA 174

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

UNIPROTKB|Q5RAX7 BCAS2 "Pre-mRNA-splicing factor SPF27" [Pongo abelii (taxid:9601)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 49/166 (29%), Positives = 82/166 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQ 146
             +ER+ A +P  +L   RY+L   P+  K+ND +AW++ +  +    +HQ +R++ L    
Sbjct:    70 FERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLELMS 129

Query:   147 NEKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                  A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 QHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 175

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0000974 "Prp19 complex" evidence=ISS

UNIPROTKB|Q5E9D4 BCAS2 "Breast carcinoma amplified sequence 2" [Bos taurus (taxid:9913)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 174

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E2RL57 BCAS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 174

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|O75934 BCAS2 "Pre-mRNA-splicing factor SPF27" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 174

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005681 "spliceosomal complex" evidence=IDA

UNIPROTKB|I6L631 BCAS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 174

GO:0006397 "mRNA processing" evidence=IEA

MGI|MGI:1915433 Bcas2 "breast carcinoma amplified sequence 2" [Mus musculus (taxid:10090)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 47/165 (28%), Positives = 81/165 (49%)

Query:    28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
             ++DALPY D  Y  P V+E    +VE+E RR  +   ++L  L       FE   ++  E
Sbjct:    12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD-IMRNE 69

Query:    88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRLAQEQN 147
             +ER+ A +P  +L   RY+L    + ++ND +AW++ +  +    +HQ +R++ L     
Sbjct:    70 FERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129

Query:   148 EKIEA--VNRERKYHQ-QNTAYELNALSTQWRELC--AKNIEIQA 187
                 A  V  E   H  ++   EL  L    ++L    KN+++ A
Sbjct:   130 HGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTA 174

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q949S9	SPF27_ARATH	No assigned EC number	0.6188	0.9336	0.8339	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00017780001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (246 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002219001	SubName- Full=Chromosome chr14 scaffold_128, whole genome shotgun sequence; (1012 aa)					•		•		0.844
	GSVIVG00020342001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (453 aa)				•	•		•		0.772
	GSVIVG00016680001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (570 aa)				•	•		•		0.560
	GSVIVG00009727001	SubName- Full=Chromosome undetermined scaffold_247, whole genome shotgun sequence; (888 aa)					•		•		0.530
	GSVIVG00028826001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (563 aa)					•		•		0.474
	GSVIVG00000309001	SubName- Full=Chromosome chr9 scaffold_104, whole genome shotgun sequence; (1279 aa)					•		•		0.422
	GSVIVG00005499001	SubName- Full=Chromosome chr13 scaffold_152, whole genome shotgun sequence; (1446 aa)					•		•		0.410
	GSVIVG00010038001	SubName- Full=Chromosome undetermined scaffold_1811, whole genome shotgun sequence; Flags- Frag [...] (309 aa)				•	•		•		0.400

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam05700	221	pfam05700, BCAS2, Breast carcinoma amplified seque	4e-53

>gnl|CDD|218703 pfam05700, BCAS2, Breast carcinoma amplified sequence 2 (BCAS2)

 Score =  169 bits (431), Expect = 4e-53
 Identities = 82/214 (38%), Positives = 122/214 (57%), Gaps = 31/214 (14%)

Query: 28  IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENH--PMLA 85
           ++DALPYIDDDY +P V+E  D +VE+EM+R  +   ++L++LP L    +     P+L 
Sbjct: 8   VVDALPYIDDDYDEPGVREAADALVEEEMKRY-RPTKNYLEHLPSLQGPDYSLFETPLLR 66

Query: 86  KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIR------- 138
            E+ERV+AG+P   LD +RY+L   PA K ND+ AWK AL  A+   +HQLIR       
Sbjct: 67  NEFERVQAGQPMKGLDMSRYELPEPPAGKANDDKAWKAALNNARAQLEHQLIRIINLELL 126

Query: 139 ---------------------MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRE 177
                                +++   E  E+IE VNR+RKY Q+    +L +L  +W +
Sbjct: 127 SKYGKNAWLVYNEQLEALLKRLEKELAELKEEIEEVNRQRKYSQEEAGEKLRSLEQRWVD 186

Query: 178 LCAKNIEIQAACANIESHIEELRKEAAESGWNLD 211
           L +KN+EI+ ACA +E  IE+L+++ AE  W   
Sbjct: 187 LVSKNLEIEVACAELEQEIEQLKRKKAELKWKEL 220

This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins. BCAS2 is a putative spliceosome associated protein. Length = 221

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
PF05700	221	BCAS2: Breast carcinoma amplified sequence 2 (BCAS	100.0
KOG3096	225	consensus Spliceosome-associated coiled-coil prote	100.0
PRK10884	206	SH3 domain-containing protein; Provisional	83.57

>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function

Probab=100.00  E-value=5.4e-52  Score=360.59  Aligned_cols=184  Identities=41%  Similarity=0.710  Sum_probs=171.8

Q ss_pred             ccccCcCCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCcccC---cCCChhhHHHHHHHHcCCCCCCCCc
Q 027260           26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFR---FENHPMLAKEYERVRAGKPPAVLDT  102 (226)
Q Consensus        26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEl~~~~~~p~~~l~~lpp~p~~~---f~~sp~L~~E~eRv~~~~p~~~lDl  102 (226)
                      .++||||||||.+|++|++|++|++||++||+++ .++++||+.+||++.+.   |. +|+|.+||+|++++.||.+|||
T Consensus         6 ~~~vDaLPYiD~~~~~~~~~~~a~~lI~eE~~~~-~~~~~~l~~lp~~~~~~~~~~~-t~~l~~E~~R~~~~~~~~~lD~   83 (221)
T PF05700_consen    6 EVLVDALPYIDPDYDTPEERQAAEALIEEEMRRY-RPTKNYLPHLPPPPEPPFSAFE-TPLLQAELERVASGEPMQGLDM   83 (221)
T ss_pred             ccccCCCCCCCCCCCCHHHHHHHHHHHHHHHhhc-CCCchhHHhCCCCCCCCccccc-chhHHHHHHHHHcCCCCCccCH
Confidence            4599999999999988999999999999999943 45668999998865443   54 5999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Q 027260          103 TRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIR----------------------------MQRLAQEQNEKIEAVN  154 (226)
Q Consensus       103 sRY~lp~p~~~~~~d~~aW~~al~nA~aqLehq~~R----------------------------lek~L~~~k~~ie~VN  154 (226)
                      +||++|+|++++.+|+++|++||+||+++++|+..|                            ++++|+.+|++|++||
T Consensus        84 sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN  163 (221)
T PF05700_consen   84 SRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVN  163 (221)
T ss_pred             HhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999888889999999999999999999999                            8999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Q 027260          155 RERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD  211 (226)
Q Consensus       155 ~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~~~~  211 (226)
                      +.||.+|+.+|.+|+.|+.+|+++|++|++||+||..|++||.++|+++++++++.+
T Consensus       164 ~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~  220 (221)
T PF05700_consen  164 RERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ  220 (221)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999999999999998864

The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].

>KOG3096 consensus Spliceosome-associated coiled-coil protein [Function unknown]

Probab=100.00  E-value=1.1e-48  Score=331.58  Aligned_cols=185  Identities=35%  Similarity=0.626  Sum_probs=168.1

Q ss_pred             ccccCcCCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCcccCcCCChhhHHHHHHHHcCCCCCCCCcccc
Q 027260           26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRY  105 (226)
Q Consensus        26 ~~~vDaLPYID~~~~~p~~r~~ve~LI~eEl~~~~~~p~~~l~~lpp~p~~~f~~sp~L~~E~eRv~~~~p~~~lDlsRY  105 (226)
                      .++||||||||.+|.+|+.|++|.+||++||++  ++|++++-+.+|+|...|..||+|.+||+|+.++.||..|||+||
T Consensus         4 ~v~vDALPY~D~~Y~e~~~Rs~a~~lVEeE~rr--~rptknyl~~lp~p~~s~f~t~~m~ne~er~~~k~pm~~l~msRy   81 (225)
T KOG3096|consen    4 EVSVDALPYFDSGYNEPGDRSAAAALVEEECRR--YRPTKNYLDHLPLPDYSAFLTDRMENEFERAGKKEPMEALDMSRY   81 (225)
T ss_pred             ceeeccccccccccCchhhHHHHHHHHHHHHHh--hcchhhhhhcCCCcccchhhhhHHHHHHHHHhccCcchhhhHHhh
Confidence            679999999999999999999999999999999  446544444467776554459999999999999999999999999


Q ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH
Q 027260          106 QLEILPANKRNDESAWKQALQKAQRLSQHQLIR----------------------------MQRLAQEQNEKIEAVNRER  157 (226)
Q Consensus       106 ~lp~p~~~~~~d~~aW~~al~nA~aqLehq~~R----------------------------lek~L~~~k~~ie~VN~~R  157 (226)
                      ++|.||+++++|..+|+++|.|+++|+|||..|                            ++++|.++|+.|++|||+|
T Consensus        82 elp~Ppagkr~d~~aW~e~l~ns~aqlEhq~~r~~NLeLM~k~g~eaw~~~ne~le~~l~~aqkelq~~kk~iq~vn~~R  161 (225)
T KOG3096|consen   82 ELPAPPAGKRNDDAAWQESLLNSMAQLEHQLVRNENLELMSKHGEEAWKQYNEVLEVMLTHAQKELQKTKKLIQDVNRQR  161 (225)
T ss_pred             cCCCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999999999999999999                            8899999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Q 027260          158 KYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDM  214 (226)
Q Consensus       158 K~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~~~~~~~  214 (226)
                      |..|+.+|.+|+.||++|+.+|++||+||+||..|+.+|.  +.+++.+||+++-.-
T Consensus       162 K~~Q~~ag~rL~~le~~wvqLv~knyeie~a~~~le~~i~--~~r~q~r~~~le~~~  216 (225)
T KOG3096|consen  162 KHAQLTAGERLRELEQKWVQLVSKNYEIEVACVQLETQID--KKRQQERGWNLEPKL  216 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHhcCCCCchh
Confidence            9999999999999999999999999999999999999999  455667789986543

>PRK10884 SH3 domain-containing protein; Provisional

Probab=83.57  E-value=19  Score=31.39  Aligned_cols=62  Identities=5%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260          139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR  200 (226)
Q Consensus       139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr  200 (226)
                      +++++++++.+.++++..-+........++...++.-.++-..|-++......++.+++.++
T Consensus        98 le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~  159 (206)
T PRK10884         98 LENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN  159 (206)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777665544444444444445555544455555444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 35/214 (16%), Positives = 69/214 (32%), Gaps = 32/214 (14%)

Query: 24  WNAEIIDALPYIDDDYADPRVKEEV---DRMVEQEMRRSSKKPSDFLKNLPPLSKFRFEN 80
            NA+  +A         +   K  +    + V   +  ++        +   L+    E 
Sbjct: 254 QNAKAWNAF--------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EV 303

Query: 81  HPMLAKEYERVRAGK-PPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRM 139
             +L K Y   R    P  VL T   +L I+  + R+  + W    +         +I  
Sbjct: 304 KSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDKLTTIIES 361

Query: 140 QRLAQEQNEKIEAVNRERKYHQQ------NTAYELNALSTQWRELCAKNIE-IQAACANI 192
                E  E        RK   +      +       LS  W ++   ++  +       
Sbjct: 362 SLNVLEPAE-------YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK- 413

Query: 193 ESHIEELRKEAAESGWNLDIDMEKGFLAQSGQVH 226
            S +E+  KE+  S  ++ +++ K  L     +H
Sbjct: 414 YSLVEKQPKESTISIPSIYLEL-KVKLENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	90.21
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	89.79
1gk7_A	39	Vimentin; intermediate filament, heptad repeat; 1.	86.27
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	86.24
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	86.2
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.09

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=90.21  E-value=1.9  Score=28.28  Aligned_cols=44  Identities=23%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 027260          165 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGW  208 (226)
Q Consensus       165 g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~  208 (226)
                      -.+|..|.+-.-.++.|+-+++--|.++++||.+|++=...-|.
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl   46 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence            34677888889999999999999999999999999987666554

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=89.79  E-value=6.2  Score=35.86  Aligned_cols=59  Identities=12%  Similarity=0.105  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260          139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAA  204 (226)
Q Consensus       139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~  204 (226)
                      +++.+..++++...+|+.=-.-|       .+|+.+-.+...|.-|+|..+..|+.+|..++.+-.
T Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (471)
T 3mq9_A          409 AQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE  467 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444554433333       456666666666777777777777777776666543

>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A

Probab=86.27  E-value=1.4  Score=27.66  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260          164 TAYELNALSTQWRELCAKNIEIQAACANIESHIEE  198 (226)
Q Consensus       164 ~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~  198 (226)
                      -..++..|..++..++.|+-.+|..+..|+.+|..
T Consensus         4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~   38 (39)
T 1gk7_A            4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ   38 (39)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999999999999998853

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=86.24  E-value=2.5  Score=28.60  Aligned_cols=49  Identities=24%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 027260          161 QQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN  209 (226)
Q Consensus       161 Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~~  209 (226)
                      ++.+..++..|.+-=..++.|+-++|.-|.+.++||.+|.+=.++-|+.
T Consensus         6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~   54 (58)
T 3a2a_A            6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLL   54 (58)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3445556677788888999999999999999999999999988887765

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=86.20  E-value=18  Score=32.79  Aligned_cols=20  Identities=20%  Similarity=0.355  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 027260          186 QAACANIESHIEELRKEAAE  205 (226)
Q Consensus       186 E~A~~~Le~ei~~lr~~~~~  205 (226)
                      +.-+.+||+||..+.++...
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~  461 (471)
T 3mq9_A          442 QKKVEELEGEITTLNHKLQD  461 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34467788888877776544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.09  E-value=11  Score=30.89  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260          139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK  201 (226)
Q Consensus       139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~  201 (226)
                      |...-..+|.+.|.+.+.||. |.+....+..+|..-+++..++-.++.+...|+.++..|..
T Consensus        15 L~E~n~kLk~EsE~~~rlkK~-~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa   76 (168)
T 3o0z_A           15 LEEANDLLRTESDTAVRLRKS-HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA   76 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445668888888888874 77888889999999999999999999999998888877665

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00